Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 48 of 196
Found at i:13362105 original size:97 final size:94
Alignment explanation
Indices: 13361913--13362231 Score: 338
Period size: 97 Copynumber: 3.3 Consensus size: 94
13361903 GTGAGTGTGC
* * *
13361913 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACCGAGGAATGCTAGTGTAAGAGCATG
1 CAGTGTAAGACCATGTCTGGGACATGGCATC-GCAC-GA--GAGGAGTGCCAGTGTAAGACCATG
* * * *
13361978 TCTAGGACATGGCATCGGTACAGACAGAGGAGAG
62 TCTGGGACATGGCATCGGCA-AGACCGAGGAGTG
* *
13362012 TCAGTGTAAGACCATGTCTGGGACATGGCATCTGCTCGAGATGAGTGCCAGTGTAAGACCATGTC
1 -CAGTGTAAGACCATGTCTGGGACATGGCATC-GCACGAGAGGAGTGCCAGTGTAAGACCATGTC
13362077 TGGGACATGGCATCGGCATAGACCGAGGAGTG
64 TGGGACATGGCATCGGCA-AGACCGAGGAGTG
** * *
13362109 CTAGTGTAAGACCATGTCTGGGACATGTTATCGACACGAGCAAAGGAGAGTCAGTGTAAGACCAT
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCG-CACGAG---AGGAGTGCCAGTGTAAGACCAT
* *
13362174 GTCTGGGACATGACATCGGC---ACCAGATGAGTG
61 GTCTGGGACATGGCATCGGCAAGACC-GAGGAGTG
*
13362206 CCAGTGTAAGATCATGTCTGGGACAT
1 -CAGTGTAAGACCATGTCTGGGACAT
13362232 TGAATCGGCA
Statistics
Matches: 192, Mismatches: 20, Indels: 17
0.84 0.09 0.07
Matches are distributed among these distances:
96 5 0.03
97 112 0.58
98 1 0.01
99 2 0.01
100 72 0.38
ACGTcount: A:0.28, C:0.20, G:0.32, T:0.20
Consensus pattern (94 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGCACGAGAGGAGTGCCAGTGTAAGACCATGTCTG
GGACATGGCATCGGCAAGACCGAGGAGTG
Found at i:13362176 original size:147 final size:147
Alignment explanation
Indices: 13361909--13362242 Score: 510
Period size: 147 Copynumber: 2.3 Consensus size: 147
13361899 GGCAGTGAGT
*
13361909 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACCGAGGAATGCTAGTGTAAGAG
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACCGAGGAATGCTAGTGTAAGAC
*
13361974 CATGTCTAGGACATGGCATCGGTACAGACAGAGGAGAGTCAGTGTAAGACCATGTCTGGGACATG
66 CATGTCTAGGACATGGCATCGGTACAGACAAAGGAGAGTCAGTGTAAGACCATGTCTGGGACATG
* * * *
13362039 GCATCTGCTCGAGATGA
131 ACATCGGCACCAGATGA
* *
13362056 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATAGACCGAGGAGTGCTAGTGTAAGAC
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACCGAGGAATGCTAGTGTAAGAC
* **
13362121 CATGTCTGGGACATGTTATC-G-ACACGAGCAAAGGAGAGTCAGTGTAAGACCATGTCTGGGACA
66 CATGTCTAGGACATGGCATCGGTACA-GA-CAAAGGAGAGTCAGTGTAAGACCATGTCTGGGACA
13362184 TGACATCGGCACCAGATGA
129 TGACATCGGCACCAGATGA
* * *
13362203 GTGCCAGTGTAAGATCATGTCTGGGACATTGAATCGGCAC
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
13362243 CGATATACGA
Statistics
Matches: 170, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
145 3 0.02
146 3 0.02
147 164 0.96
ACGTcount: A:0.28, C:0.20, G:0.32, T:0.20
Consensus pattern (147 bp):
GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACCGAGGAATGCTAGTGTAAGAC
CATGTCTAGGACATGGCATCGGTACAGACAAAGGAGAGTCAGTGTAAGACCATGTCTGGGACATG
ACATCGGCACCAGATGA
Found at i:13364820 original size:25 final size:25
Alignment explanation
Indices: 13364792--13364845 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
13364782 TTTTCTTTTC
* *
13364792 TTTT-TCTTTTCATTTTTAGCTTAGG
1 TTTTCTCTTTTC-TTTTTAGATTAGA
13364817 TTTTCTCTTTTCTTTTTAGATTAGA
1 TTTTCTCTTTTCTTTTTAGATTAGA
13364842 TTTT
1 TTTT
13364846 GTTTTTGTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 19 0.73
26 7 0.27
ACGTcount: A:0.13, C:0.11, G:0.09, T:0.67
Consensus pattern (25 bp):
TTTTCTCTTTTCTTTTTAGATTAGA
Found at i:13368182 original size:20 final size:21
Alignment explanation
Indices: 13368135--13368182 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
13368125 TAACGTTTAA
13368135 AAAATATATTAATATACTTAT
1 AAAATATATTAATATACTTAT
*
13368156 AATAATATA-T-ATATACTTTT
1 AA-AATATATTAATATACTTAT
13368176 ACAAATA
1 A-AAATA
13368183 CTTAACAAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 14 0.58
21 4 0.17
22 6 0.25
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (21 bp):
AAAATATATTAATATACTTAT
Found at i:13371332 original size:30 final size:29
Alignment explanation
Indices: 13371298--13371368 Score: 83
Period size: 29 Copynumber: 2.4 Consensus size: 29
13371288 AAATATGTTG
13371298 TGTTGGAAAGAAAATTA-GAGAAGAAAAAGA-
1 TGTTGG-AAGAAAA-TAGGAGAAGAAAAA-AC
*
13371328 TGTTGGGAGAAAATAGGAGAAGAAAAAAC
1 TGTTGGAAGAAAATAGGAGAAGAAAAAAC
*
13371357 TGTTGGGAGAAA
1 TGTTGGAAGAAA
13371369 TTGAGAAAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
28 3 0.08
29 29 0.76
30 6 0.16
ACGTcount: A:0.51, C:0.01, G:0.31, T:0.17
Consensus pattern (29 bp):
TGTTGGAAGAAAATAGGAGAAGAAAAAAC
Found at i:13371340 original size:29 final size:29
Alignment explanation
Indices: 13371306--13371381 Score: 95
Period size: 29 Copynumber: 2.6 Consensus size: 29
13371296 TGTGTTGGAA
13371306 AGAAAATTAGAGAAGAAAAAGA-TGTTGGG
1 AGAAAATTAGAGAAGAAAAA-ACTGTTGGG
13371335 AGAAAA-TAGGAGAAGAAAAAACTGTTGGG
1 AGAAAATTA-GAGAAGAAAAAACTGTTGGG
*
13371364 AG-AAATTGAGAAAAGAAA
1 AGAAAATT-AGAGAAGAAA
13371382 TTTTTTTGAT
Statistics
Matches: 42, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
28 6 0.14
29 35 0.83
30 1 0.02
ACGTcount: A:0.55, C:0.01, G:0.29, T:0.14
Consensus pattern (29 bp):
AGAAAATTAGAGAAGAAAAAACTGTTGGG
Found at i:13375626 original size:12 final size:12
Alignment explanation
Indices: 13375609--13375634 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
13375599 TTATTTTAAC
13375609 TTAATTTAAAAG
1 TTAATTTAAAAG
13375621 TTAATTTAAAAG
1 TTAATTTAAAAG
13375633 TT
1 TT
13375635 TTCTAAGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (12 bp):
TTAATTTAAAAG
Found at i:13375731 original size:22 final size:25
Alignment explanation
Indices: 13375703--13375757 Score: 71
Period size: 22 Copynumber: 2.3 Consensus size: 25
13375693 ATTTTATTTA
13375703 ATTTTAACTT-TTA-TTCAAAA-AT
1 ATTTTAACTTATTATTTCAAAACAT
*
13375725 ATTTTAATTTATTATTTCAAAACAT
1 ATTTTAACTTATTATTTCAAAACAT
13375750 ATTATTAA
1 ATT-TTAA
13375758 ATAAAGTTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 9 0.32
23 3 0.11
24 7 0.25
25 5 0.18
26 4 0.14
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.51
Consensus pattern (25 bp):
ATTTTAACTTATTATTTCAAAACAT
Found at i:13390160 original size:50 final size:50
Alignment explanation
Indices: 13390053--13390299 Score: 246
Period size: 50 Copynumber: 4.8 Consensus size: 50
13390043 ATTTGGGTAA
* * *
13390053 AGAGATCCCATGTAAGACCATGTCTGGGACATTGCATTGGCATCATTGAGGTTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGA-G--ATG
*
13390109 AGAGGTACCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* ** * *
13390159 AGAGGCCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * * *
13390209 AGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA--GTACAAG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATG
* ** *
13390258 AAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
13390300 TGTTATTATT
Statistics
Matches: 164, Mismatches: 26, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
48 1 0.01
49 39 0.24
50 81 0.49
52 1 0.01
53 2 0.01
55 1 0.01
56 39 0.24
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:13394809 original size:19 final size:20
Alignment explanation
Indices: 13394785--13394822 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
13394775 GTAATCTTCG
*
13394785 AAGATATG-CAATCTTAGAT
1 AAGATATGTAAATCTTAGAT
13394804 AAGATATGTAAATCTTAGA
1 AAGATATGTAAATCTTAGA
13394823 AGATATGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.45, C:0.08, G:0.16, T:0.32
Consensus pattern (20 bp):
AAGATATGTAAATCTTAGAT
Found at i:13394819 original size:20 final size:19
Alignment explanation
Indices: 13394785--13394830 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
13394775 GTAATCTTCG
*
13394785 AAGATATGCAATCTTAGAT
1 AAGATATGAAATCTTAGAT
13394804 AAGATATGTAAATCTTAG--
1 AAGATATG-AAATCTTAGAT
13394822 AAGATATGA
1 AAGATATGA
13394831 TTCTATGATC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 1 0.04
18 8 0.32
19 8 0.32
20 8 0.32
ACGTcount: A:0.46, C:0.07, G:0.17, T:0.30
Consensus pattern (19 bp):
AAGATATGAAATCTTAGAT
Found at i:13398724 original size:65 final size:65
Alignment explanation
Indices: 13398649--13398785 Score: 274
Period size: 65 Copynumber: 2.1 Consensus size: 65
13398639 AGCTTCTTCC
13398649 TTTCACAATCCCACCCCATGCATGTGATATGGCCATTTTAACACATATGTTTAACTTTCCATATT
1 TTTCACAATCCCACCCCATGCATGTGATATGGCCATTTTAACACATATGTTTAACTTTCCATATT
13398714 TTTCACAATCCCACCCCATGCATGTGATATGGCCATTTTAACACATATGTTTAACTTTCCATATT
1 TTTCACAATCCCACCCCATGCATGTGATATGGCCATTTTAACACATATGTTTAACTTTCCATATT
13398779 TTTCACA
1 TTTCACA
13398786 TATTCATGCT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 72 1.00
ACGTcount: A:0.28, C:0.26, G:0.09, T:0.37
Consensus pattern (65 bp):
TTTCACAATCCCACCCCATGCATGTGATATGGCCATTTTAACACATATGTTTAACTTTCCATATT
Found at i:13405069 original size:15 final size:17
Alignment explanation
Indices: 13405049--13405085 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
13405039 ATCGACCATT
13405049 ATTATAAT-TATGG-TA
1 ATTATAATATATGGTTA
*
13405064 ATTATAATATTTGGTTA
1 ATTATAATATATGGTTA
13405081 ATTAT
1 ATTAT
13405086 TATGATTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 8 0.42
16 4 0.21
17 7 0.37
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (17 bp):
ATTATAATATATGGTTA
Found at i:13409512 original size:15 final size:16
Alignment explanation
Indices: 13409492--13409529 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
13409482 TAGTCTCCTT
13409492 TAGTTTCACAA-TCTA
1 TAGTTTCACAATTCTA
*
13409507 TAGTTTTCACAATTTTA
1 TAG-TTTCACAATTCTA
13409524 TAGTTT
1 TAGTTT
13409530 TCAAAGTCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 3 0.15
16 11 0.55
17 6 0.30
ACGTcount: A:0.29, C:0.13, G:0.08, T:0.50
Consensus pattern (16 bp):
TAGTTTCACAATTCTA
Found at i:13409516 original size:16 final size:17
Alignment explanation
Indices: 13409495--13409532 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
13409485 TCTCCTTTAG
13409495 TTTCACAA-TCTATAGT
1 TTTCACAATTCTATAGT
*
13409511 TTTCACAATTTTATAGT
1 TTTCACAATTCTATAGT
13409528 TTTCA
1 TTTCA
13409533 AAGTCTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.29, C:0.16, G:0.05, T:0.50
Consensus pattern (17 bp):
TTTCACAATTCTATAGT
Found at i:13411035 original size:20 final size:20
Alignment explanation
Indices: 13410988--13411035 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
13410978 ATTTACTCAC
13410988 AAATTA-ATT-AATTAAATA
1 AAATTATATTAAATTAAATA
*
13411006 AAATTTTATTAAATTAAATA
1 AAATTATATTAAATTAAATA
*
13411026 ACATTATATT
1 AAATTATATT
13411036 TCACTTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 5 0.20
19 3 0.12
20 17 0.68
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (20 bp):
AAATTATATTAAATTAAATA
Found at i:13415067 original size:43 final size:43
Alignment explanation
Indices: 13415018--13415130 Score: 190
Period size: 43 Copynumber: 2.6 Consensus size: 43
13415008 ATGTTCCAAT
13415018 ATCGATTTGAGATTTCGTGTAAGACCATAGTTGGGCTATTGGC
1 ATCGATTTGAGATTTCGTGTAAGACCATAGTTGGGCTATTGGC
*
13415061 TTCGATTTGAGATTTCGTGTAAGACCATAGTTGGGCTATTGGC
1 ATCGATTTGAGATTTCGTGTAAGACCATAGTTGGGCTATTGGC
* *
13415104 ATCGATATGAGATTTCCATGTAAGACC
1 ATCGATTTGAGATTT-CGTGTAAGACC
13415131 GTGCCTAGGA
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
43 55 0.85
44 10 0.15
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.35
Consensus pattern (43 bp):
ATCGATTTGAGATTTCGTGTAAGACCATAGTTGGGCTATTGGC
Found at i:13420523 original size:48 final size:48
Alignment explanation
Indices: 13420446--13420543 Score: 169
Period size: 48 Copynumber: 2.0 Consensus size: 48
13420436 ATTGGATTAA
* *
13420446 ATGGAAAGAAGTAGTAGAAGTATACGTGCTGAGGCCCAATGTTGTAGC
1 ATGGAAAGAAGTAGTAGAAGTACACGTGCTGAGGCCCAATGTCGTAGC
*
13420494 ATGGAAAGAAGTAGTAGAAGTACATGTGCTGAGGCCCAATGTCGTAGC
1 ATGGAAAGAAGTAGTAGAAGTACACGTGCTGAGGCCCAATGTCGTAGC
13420542 AT
1 AT
13420544 CGGACCAACG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.34, C:0.13, G:0.31, T:0.22
Consensus pattern (48 bp):
ATGGAAAGAAGTAGTAGAAGTACACGTGCTGAGGCCCAATGTCGTAGC
Found at i:13432014 original size:27 final size:27
Alignment explanation
Indices: 13431973--13432075 Score: 127
Period size: 27 Copynumber: 3.8 Consensus size: 27
13431963 TAGTATTGGC
*
13431973 GCCTATTTGGAAGGCTCCAATGGTGGT
1 GCCTATTTGGAAGGCGCCAATGGTGGT
*
13432000 GCCTATTTGGGAGGCGCCAATGGTGGT
1 GCCTATTTGGAAGGCGCCAATGGTGGT
* * *
13432027 GCCTATGTAGCAGGCGCCAATGGTGGT
1 GCCTATTTGGAAGGCGCCAATGGTGGT
* *
13432054 GCC-ATATTAGAAGGTGCCAATG
1 GCCTAT-TTGGAAGGCGCCAATG
13432076 CTGTGATTTT
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
26 2 0.03
27 65 0.97
ACGTcount: A:0.20, C:0.19, G:0.35, T:0.25
Consensus pattern (27 bp):
GCCTATTTGGAAGGCGCCAATGGTGGT
Found at i:13432179 original size:18 final size:20
Alignment explanation
Indices: 13432137--13432183 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 20
13432127 AAAACAAAAG
13432137 AAAGAAGAAGGAAGGAAGCA
1 AAAGAAGAAGGAAGGAAGCA
* *
13432157 GAAGAA-AA-GAAGGAAGGA
1 AAAGAAGAAGGAAGGAAGCA
13432175 AAAGAAGAA
1 AAAGAAGAA
13432184 AAAAAGTAGG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
18 14 0.61
19 4 0.17
20 5 0.22
ACGTcount: A:0.64, C:0.02, G:0.34, T:0.00
Consensus pattern (20 bp):
AAAGAAGAAGGAAGGAAGCA
Found at i:13432186 original size:22 final size:23
Alignment explanation
Indices: 13432134--13432186 Score: 74
Period size: 22 Copynumber: 2.3 Consensus size: 23
13432124 ACAAAAACAA
*
13432134 AAGAAAGAAGAAGGAAGGAAGCAG
1 AAGAAA-AAGAAGGAAGGAAGAAG
13432158 AAG-AAAAGAAGGAAGGAA-AAG
1 AAGAAAAAGAAGGAAGGAAGAAG
13432179 AAGAAAAA
1 AAGAAAAA
13432187 AAGTAGGTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
21 5 0.19
22 17 0.63
23 2 0.07
24 3 0.11
ACGTcount: A:0.66, C:0.02, G:0.32, T:0.00
Consensus pattern (23 bp):
AAGAAAAAGAAGGAAGGAAGAAG
Found at i:13435522 original size:6 final size:6
Alignment explanation
Indices: 13435504--13435553 Score: 64
Period size: 6 Copynumber: 8.3 Consensus size: 6
13435494 AGAATGTGGT
* * * *
13435504 TCTGGG TCTGGC TCCGGC TCTGGC GCTGGC TCTGGG TCTGGC TCTGGC
1 TCTGGC TCTGGC TCTGGC TCTGGC TCTGGC TCTGGC TCTGGC TCTGGC
13435552 TC
1 TC
13435554 CGGTGCATGA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.00, C:0.32, G:0.38, T:0.30
Consensus pattern (6 bp):
TCTGGC
Found at i:13437426 original size:50 final size:50
Alignment explanation
Indices: 13437302--13437550 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
13437292 GATAATAACA
* * ** * *
13437302 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
13437353 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
13437403 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
13437453 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
13437508 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
13437551 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:13437480 original size:100 final size:104
Alignment explanation
Indices: 13437301--13437550 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
13437291 TGATAATAAC
**
13437301 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
13437366 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
13437403 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
13437466 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
13437508 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
13437551 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:13437666 original size:13 final size:13
Alignment explanation
Indices: 13437645--13437676 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
13437635 GCTTGGATCA
*
13437645 TCATCAAATAAAT
1 TCATAAAATAAAT
13437658 TCATAAAATAAAT
1 TCATAAAATAAAT
13437671 TCATAA
1 TCATAA
13437677 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:13437923 original size:30 final size:30
Alignment explanation
Indices: 13437888--13437945 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
13437878 CCTCGACTCT
*
13437888 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
13437918 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
13437946 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:13439524 original size:38 final size:38
Alignment explanation
Indices: 13439481--13439562 Score: 146
Period size: 38 Copynumber: 2.2 Consensus size: 38
13439471 AAAAAGTCAG
13439481 TTATAATTAAACTTTTAATAAAATGATTTTTAATTTAT
1 TTATAATTAAACTTTTAATAAAATGATTTTTAATTTAT
* *
13439519 TTATAATTAAACTTTTAATGAAATGATTTTTAATTTTT
1 TTATAATTAAACTTTTAATAAAATGATTTTTAATTTAT
13439557 TTATAA
1 TTATAA
13439563 ACTTTATATG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 42 1.00
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (38 bp):
TTATAATTAAACTTTTAATAAAATGATTTTTAATTTAT
Found at i:13439781 original size:19 final size:19
Alignment explanation
Indices: 13439757--13440231 Score: 167
Period size: 19 Copynumber: 25.2 Consensus size: 19
13439747 ATATCCCCAC
13439757 ATTACAATATTCATACAAA
1 ATTACAATATTCATACAAA
*
13439776 ATTACAATA-T--TACAAT
1 ATTACAATATTCATACAAA
*
13439792 ATT-C-ATA--CA-AAAAA
1 ATTACAATATTCATACAAA
*
13439806 ATTGCAATATTCATACAAAATTATA
1 ATTACAATATTCATAC---A--A-A
*
13439831 ATATTACAATATTCATACAAC
1 AT--TACAATATTCATACAAA
*
13439852 ATTACAATATTCATAAAAAA
1 ATTACAATATTCAT-ACAAA
*
13439872 ATTATAATATTCATACAAA
1 ATTACAATATTCATACAAA
*
13439891 ATTACAATA-T--TACAAC
1 ATTACAATATTCATACAAA
*
13439907 ATT-C-ATA--CA-AAAAA
1 ATTACAATATTCATACAAA
*
13439921 ATTGCAATATTCATACAAA
1 ATTACAATATTCATACAAA
* *
13439940 ATTATAATA-T--TACAAT
1 ATTACAATATTCATACAAA
13439956 ATT-C-ATA--CA-A-AAA
1 ATTACAATATTCATACAAA
* *
13439969 AATATAATATTCATACAAA
1 ATTACAATATTCATACAAA
* *
13439988 ATTACAA-AAT--TACAAT
1 ATTACAATATTCATACAAA
*
13440004 ATT-C-ATA--CA-AAAAA
1 ATTACAATATTCATACAAA
*
13440018 ATTGCAATATTCATACAAAACTATAA
1 ATTACAATATTCAT-----AC-A-AA
13440044 TATTACAATATTCATACAAAAA
1 -ATTACAATATTCATAC--AAA
*
13440066 ATTTATAATATTCATACAAA
1 A-TTACAATATTCATACAAA
*
13440086 ATTACAATATTTATACAAAAA
1 ATTACAATATTCATAC--AAA
* * *
13440107 ATTACTA-ATCCAAAACTATAA
1 ATTACAATATTC-ATAC-A-AA
*
13440128 A-TACAAATTTAATT-ATAAAATA
1 ATTAC-AA--T-ATTCATACAA-A
*
13440150 ATTACAATATTCATACAAC
1 ATTACAATATTCATACAAA
13440169 ATTACAATATTCATACAAA
1 ATTACAATATTCATACAAA
*
13440188 ATTATAATATTCATACAAAAA
1 ATTACAATATTCATAC--AAA
*
13440209 ATTTAAAATATTCATACAAA
1 A-TTACAATATTCATACAAA
13440229 ATT
1 ATT
13440232 CTAATCTAAA
Statistics
Matches: 344, Mismatches: 48, Indels: 128
0.66 0.09 0.25
Matches are distributed among these distances:
13 4 0.01
14 29 0.08
15 10 0.03
16 41 0.12
17 2 0.01
18 12 0.03
19 104 0.30
20 36 0.10
21 24 0.07
22 39 0.11
23 6 0.02
24 3 0.01
25 6 0.02
26 2 0.01
27 26 0.08
ACGTcount: A:0.54, C:0.13, G:0.01, T:0.32
Consensus pattern (19 bp):
ATTACAATATTCATACAAA
Found at i:13439793 original size:27 final size:26
Alignment explanation
Indices: 13439757--13440096 Score: 282
Period size: 27 Copynumber: 14.1 Consensus size: 26
13439747 ATATCCCCAC
13439757 ATTACAATATTCATACAAAATTACAAT
1 ATTACAATATTCATACAAAATTA-AAT
13439784 ATTACAATATTCATAC-AAA--AAA-
1 ATTACAATATTCATACAAAATTAAAT
*
13439806 ATTGCAATATTCATACAAAATTATAAT
1 ATTACAATATTCATACAAAATTA-AAT
*
13439833 ATTACAATATTCATACAACATTACAAT
1 ATTACAATATTCATACAAAATTA-AAT
*
13439860 ATT-C-ATA---A-A-AAAATT-AT-
1 ATTACAATATTCATACAAAATTAAAT
13439877 -----AATATTCATACAAAATTACAAT
1 ATTACAATATTCATACAAAATTA-AAT
*
13439899 ATTACAACATTCATAC-AAA--AAA-
1 ATTACAATATTCATACAAAATTAAAT
*
13439921 ATTGCAATATTCATACAAAATTATAAT
1 ATTACAATATTCATACAAAATTA-AAT
13439948 ATTACAATATTCATACAAAA--AAAT
1 ATTACAATATTCATACAAAATTAAAT
*
13439972 A-T--AATATTCATACAAAATTACAAA
1 ATTACAATATTCATACAAAATTA-AAT
13439996 ATTACAATATTCATAC-AAA--AAA-
1 ATTACAATATTCATACAAAATTAAAT
* *
13440018 ATTGCAATATTCATACAAAACTATAAT
1 ATTACAATATTCATACAAAATTA-AAT
13440045 ATTACAATATTCATAC-AAA--AAAT
1 ATTACAATATTCATACAAAATTAAAT
*
13440068 -TTATAATATTCATACAAAATTACAAT
1 ATTACAATATTCATACAAAATTA-AAT
13440094 ATT
1 ATT
13440097 TATACAAAAA
Statistics
Matches: 258, Mismatches: 15, Indels: 80
0.73 0.04 0.23
Matches are distributed among these distances:
14 3 0.01
17 1 0.00
18 2 0.01
19 6 0.02
20 5 0.02
21 17 0.07
22 59 0.23
23 23 0.09
24 11 0.04
25 9 0.03
26 22 0.09
27 100 0.39
ACGTcount: A:0.54, C:0.13, G:0.01, T:0.32
Consensus pattern (26 bp):
ATTACAATATTCATACAAAATTAAAT
Found at i:13439820 original size:95 final size:95
Alignment explanation
Indices: 13439705--13439882 Score: 252
Period size: 95 Copynumber: 1.9 Consensus size: 95
13439695 AATTAATTAT
* * *
13439705 AAAATAATTACAATATTCATACAAAAATTACAATATTACAATATATC-CCCACATTACAATATTC
1 AAAAAAATTACAATATTCATAC-AAAATTACAATATTACAATAT-TCAACAACATTACAATATTC
*
13439769 AT-ACAAAATTACAATATTACAATATTCATAC
64 ATAAAAAAATTACAATATTACAATATTCATAC
* *
13439800 AAAAAAATTGCAATATTCATACAAAATTATAATATTACAATATTCATACAACATTACAATATTCA
1 AAAAAAATTACAATATTCATACAAAATTACAATATTACAATATTCA-ACAACATTACAATATTCA
*
13439865 TAAAAAAATTATAATATT
65 TAAAAAAATTACAATATT
13439883 CATACAAAAT
Statistics
Matches: 73, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
93 2 0.03
94 20 0.27
95 37 0.51
96 14 0.19
ACGTcount: A:0.52, C:0.15, G:0.01, T:0.33
Consensus pattern (95 bp):
AAAAAAATTACAATATTCATACAAAATTACAATATTACAATATTCAACAACATTACAATATTCAT
AAAAAAATTACAATATTACAATATTCATAC
Found at i:13439834 original size:49 final size:48
Alignment explanation
Indices: 13439705--13440105 Score: 204
Period size: 49 Copynumber: 8.5 Consensus size: 48
13439695 AATTAATTAT
13439705 AAAATAATTACAATATTCATACAAAAATTACAATATTACAATA-T-AT-C
1 AAAA-AATTACAATATTCATAC-AAAATTACAATATTACAATATTCATAC
*** *
13439752 CCCACATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
1 AAAAAATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
* *
13439800 AAAAAAATTGCAATATTCATACAAAATTATAATATTACAATATTCATAC
1 -AAAAAATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
* * *
13439849 --AACATTACAATATTCATAAAAAAATTATAATATT-C-ATA--CA-A-
1 AAAAAATTACAATATTCAT-ACAAAATTACAATATTACAATATTCATAC
* *
13439890 AATTACAATATTACAACATTCATAC-AAA--A-AA-ATTGCAATATTCATAC
1 AA--A-AA-ATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
13439937 AAAATTATAATATTACAATATTCATACAAAA--A-AATA-T--AATATTCATAC
1 --AA--A-AA-ATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
*
13439985 AAAATTACAAAATTACAATATTCATAC-AAA--A-AA-ATTGCAATATTCATAC
1 ---A--A-AAAATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
*
13440034 AAAACTATAATATTACAATATTCATAC-AAA--A-AAT-TTATAATATTCATAC
1 --AA--A-AA-ATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
*
13440083 --AAAATTACAATATTTATACAAAA
1 AAAAAATTACAATATTCATACAAAA
13440106 AATTACTAAT
Statistics
Matches: 299, Mismatches: 23, Indels: 69
0.76 0.06 0.18
Matches are distributed among these distances:
41 18 0.06
42 9 0.03
43 7 0.02
45 29 0.10
46 38 0.13
47 39 0.13
48 33 0.11
49 116 0.39
50 8 0.03
51 2 0.01
ACGTcount: A:0.54, C:0.14, G:0.01, T:0.32
Consensus pattern (48 bp):
AAAAAATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
Found at i:13440000 original size:97 final size:97
Alignment explanation
Indices: 13439852--13440092 Score: 430
Period size: 97 Copynumber: 2.5 Consensus size: 97
13439842 TTCATACAAC
*
13439852 ATTACAATATTCATA-AAAAAATTATAATATTCATACAAAATTACAATATTACAACATTCATACA
1 ATTACAATATTCATACAAAAAATTATAATATTCATACAAAATTACAAAATTACAACATTCATACA
*
13439916 AAAAAATTGCAATATTCATACAAAATTATAAT
66 AAAAAATTGCAATATTCATACAAAACTATAAT
* *
13439948 ATTACAATATTCATACAAAAAAATATAATATTCATACAAAATTACAAAATTACAATATTCATACA
1 ATTACAATATTCATACAAAAAATTATAATATTCATACAAAATTACAAAATTACAACATTCATACA
13440013 AAAAAATTGCAATATTCATACAAAACTATAAT
66 AAAAAATTGCAATATTCATACAAAACTATAAT
13440045 ATTACAATATTCATACAAAAAATTTATAATATTCATACAAAATTACAA
1 ATTACAATATTCATACAAAAAA-TTATAATATTCATACAAAATTACAA
13440093 TATTTATACA
Statistics
Matches: 138, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
96 15 0.11
97 99 0.72
98 24 0.17
ACGTcount: A:0.55, C:0.13, G:0.01, T:0.32
Consensus pattern (97 bp):
ATTACAATATTCATACAAAAAATTATAATATTCATACAAAATTACAAAATTACAACATTCATACA
AAAAAATTGCAATATTCATACAAAACTATAAT
Found at i:13440205 original size:49 final size:47
Alignment explanation
Indices: 13440150--13440236 Score: 80
Period size: 41 Copynumber: 2.0 Consensus size: 47
13440140 TTATAAAATA
* *
13440150 ATTACAATATTCATAC-AACATTACAATATTCATACAAAATTATAAT
1 ATTACAATATTCATACAAAAATTATAATATTCATACAAAATTATAAT
* * *
13440196 ATT-C-ATA--CA-A-AAAATTTAAAATATTCATACAAAATTCTAAT
1 ATTACAATATTCATACAAAAATTATAATATTCATACAAAATTATAAT
13440237 CTAAACTATA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
41 27 0.75
42 2 0.06
44 3 0.08
45 1 0.03
46 3 0.08
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (47 bp):
ATTACAATATTCATACAAAAATTATAATATTCATACAAAATTATAAT
Found at i:13440619 original size:13 final size:13
Alignment explanation
Indices: 13440601--13440626 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13440591 CACCCGACCC
13440601 GACCCGTATTTTT
1 GACCCGTATTTTT
13440614 GACCCGTATTTTT
1 GACCCGTATTTTT
13440627 TTCAAAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.15, T:0.46
Consensus pattern (13 bp):
GACCCGTATTTTT
Found at i:13448261 original size:21 final size:21
Alignment explanation
Indices: 13448220--13448261 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
13448210 GACCCATGCA
*
13448220 TGTTTGTAATTTACTTGGTAG
1 TGTTTGTAATTTACTTCGTAG
*
13448241 TGTTTGTAATTTAGTTCGTAG
1 TGTTTGTAATTTACTTCGTAG
13448262 CCATGATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.19, C:0.05, G:0.24, T:0.52
Consensus pattern (21 bp):
TGTTTGTAATTTACTTCGTAG
Found at i:13448339 original size:138 final size:138
Alignment explanation
Indices: 13448091--13448367 Score: 482
Period size: 138 Copynumber: 2.0 Consensus size: 138
13448081 CACTGCTTCT
13448091 TTTACTTAGTAGTGTTTGTAATTTAGCTCGTAGCCATGATTTTCTTGGATGACTAGTGTTGGAGC
1 TTTACTTAGTAGTGTTTGTAATTTAGCTCGTAGCCATGATTTTCTTGGATGACTAGTGTTGGAGC
*
13448156 TTTTCAAGCATAACTATTTCATAGTTTCTTATTTTGCTAATTGGTTTGAGGGAGGACCCATGCAT
66 TTTTCAAGCATAACTATTTCATAGTTTCTTATTTTGCTAACTGGTTTGAGGGAGGACCCATGCAT
*
13448221 GTTTGTAA
131 GTTTATAA
* * *
13448229 TTTACTTGGTAGTGTTTGTAATTTAGTTCGTAGCCATGATTTTCTTGGATGACTAGTTTTGGAGC
1 TTTACTTAGTAGTGTTTGTAATTTAGCTCGTAGCCATGATTTTCTTGGATGACTAGTGTTGGAGC
* * *
13448294 TTTTCAAGCATAACTATTTCATGGTTTCTTATTTTGGTAACTGGTTTGTGGGAGGACCCATGCAT
66 TTTTCAAGCATAACTATTTCATAGTTTCTTATTTTGCTAACTGGTTTGAGGGAGGACCCATGCAT
13448359 GTTTATAA
131 GTTTATAA
13448367 T
1 T
13448368 GATGTAAACC
Statistics
Matches: 131, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
138 131 1.00
ACGTcount: A:0.22, C:0.13, G:0.22, T:0.44
Consensus pattern (138 bp):
TTTACTTAGTAGTGTTTGTAATTTAGCTCGTAGCCATGATTTTCTTGGATGACTAGTGTTGGAGC
TTTTCAAGCATAACTATTTCATAGTTTCTTATTTTGCTAACTGGTTTGAGGGAGGACCCATGCAT
GTTTATAA
Found at i:13448748 original size:22 final size:22
Alignment explanation
Indices: 13448722--13448765 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
13448712 CTGTGTCACC
13448722 TGGTAAAATCGCATATGATCAT
1 TGGTAAAATCGCATATGATCAT
*
13448744 TGGTAAAATTGCATATGATCAT
1 TGGTAAAATCGCATATGATCAT
13448766 ACCTTGAGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.34
Consensus pattern (22 bp):
TGGTAAAATCGCATATGATCAT
Found at i:13454982 original size:27 final size:28
Alignment explanation
Indices: 13454898--13454995 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
13454888 CATGAGATTG
* * * *
13454898 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
13454927 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
13454955 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
13454982 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
13454996 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:13455006 original size:27 final size:27
Alignment explanation
Indices: 13454926--13455008 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
13454916 TAAATTGTAC
* *
13454926 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
13454954 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
13454981 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
13455008 A
1 A
13455009 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:13455009 original size:29 final size:27
Alignment explanation
Indices: 13454898--13455009 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
13454888 CATGAGATTG
** * *
13454898 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
13454927 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
13454955 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
13454982 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
13455010 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:13463002 original size:27 final size:28
Alignment explanation
Indices: 13462918--13463014 Score: 133
Period size: 27 Copynumber: 3.5 Consensus size: 28
13462908 CATGAGATTG
* * * *
13462918 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
13462947 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
13462975 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
13463002 GCACTGAGTGTGC
1 GCACTAAGTGTGC
13463015 AGACTTAATA
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 23 0.37
28 22 0.35
29 18 0.29
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:13463026 original size:27 final size:27
Alignment explanation
Indices: 13462946--13463028 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
13462936 TAAATTGTAC
* *
13462946 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
13462974 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
13463001 AGCACTGAGTGTGCAGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
13463028 A
1 A
13463029 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:13463029 original size:29 final size:27
Alignment explanation
Indices: 13462918--13463029 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
13462908 CATGAGATTG
** * *
13462918 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
13462947 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
13462975 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
13463002 GCACTGAGTGTGCAGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
13463030 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:13470068 original size:40 final size:40
Alignment explanation
Indices: 13470022--13470165 Score: 198
Period size: 40 Copynumber: 3.6 Consensus size: 40
13470012 TGTTATACTC
* * *
13470022 TCTGTTTGGCGTGTTTCAGTTGGATCAGCTCTTATAAGCT
1 TCTGTTTGGCGTGTTTCGGTTGGATCAGCACTTATGAGCT
* *
13470062 TCTGTTTGGCGTGTTTCGGTTAGATCAGAACTTATGAGCT
1 TCTGTTTGGCGTGTTTCGGTTGGATCAGCACTTATGAGCT
* * *
13470102 TTTGTTTGGCGTGTTTTGGTTGGATCAACACTTATGAGCT
1 TCTGTTTGGCGTGTTTCGGTTGGATCAGCACTTATGAGCT
* *
13470142 TTTTTTTGGCGTGTTTCGGTTGGA
1 TCTGTTTGGCGTGTTTCGGTTGGA
13470166 CCAACTTTTA
Statistics
Matches: 92, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 92 1.00
ACGTcount: A:0.14, C:0.14, G:0.28, T:0.44
Consensus pattern (40 bp):
TCTGTTTGGCGTGTTTCGGTTGGATCAGCACTTATGAGCT
Found at i:13470177 original size:80 final size:80
Alignment explanation
Indices: 13470024--13470184 Score: 209
Period size: 80 Copynumber: 2.0 Consensus size: 80
13470014 TTATACTCTC
* *
13470024 TGTTTGGCGTGTTTCAGTTGGATCAGCTCTTATAAGCTTCTGTTTGGCGTGTTTCGGTTAGATCA
1 TGTTTGGCGTGTTTCAGTTGGATCAACACTTATAAGCTTCTGTTTGGCGTGTTTCGGTTAGATCA
*
13470089 GAACTTATGAGCTTT
66 CAACTTATGAGCTTT
** * * * *
13470104 TGTTTGGCGTGTTTTGGTTGGATCAACACTTATGAGCTTTTTTTTGGCGTGTTTCGGTTGGA-C-
1 TGTTTGGCGTGTTTCAGTTGGATCAACACTTATAAGCTTCTGTTTGGCGTGTTTCGGTTAGATCA
13470167 CAACTTTTATGAGCTTT
66 CAAC--TTATGAGCTTT
13470184 T
1 T
13470185 TTCGGGTGTG
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
78 3 0.04
79 1 0.01
80 66 0.94
ACGTcount: A:0.15, C:0.14, G:0.26, T:0.45
Consensus pattern (80 bp):
TGTTTGGCGTGTTTCAGTTGGATCAACACTTATAAGCTTCTGTTTGGCGTGTTTCGGTTAGATCA
CAACTTATGAGCTTT
Found at i:13470186 original size:40 final size:40
Alignment explanation
Indices: 13470024--13470184 Score: 189
Period size: 40 Copynumber: 4.0 Consensus size: 40
13470014 TTATACTCTC
* * * * *
13470024 TGTTTGGCGTGTTTCAGTTGGATCAGCTCTTATAAGCTTC
1 TGTTTGGCGTGTTTCGGTTGGACCAACTCTTATGAGCTTT
* * *
13470064 TGTTTGGCGTGTTTCGGTTAGATCAGA-ACTTATGAGCTTT
1 TGTTTGGCGTGTTTCGGTTGGACCA-ACTCTTATGAGCTTT
* * *
13470104 TGTTTGGCGTGTTTTGGTTGGATCAACACTTATGAGCTTT
1 TGTTTGGCGTGTTTCGGTTGGACCAACTCTTATGAGCTTT
* *
13470144 TTTTTGGCGTGTTTCGGTTGGACCAACTTTTATGAGCTTT
1 TGTTTGGCGTGTTTCGGTTGGACCAACTCTTATGAGCTTT
13470184 T
1 T
13470185 TTCGGGTGTG
Statistics
Matches: 106, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 105 0.99
ACGTcount: A:0.15, C:0.14, G:0.26, T:0.45
Consensus pattern (40 bp):
TGTTTGGCGTGTTTCGGTTGGACCAACTCTTATGAGCTTT
Found at i:13470196 original size:40 final size:39
Alignment explanation
Indices: 13470091--13470198 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 39
13470081 TTAGATCAGA
*
13470091 ACTTATGAGCTTTTGTTTGGCGTGT-TTTGGTTGGATCAAC
1 ACTTATGAGCTTTT-TTTGG-GTGTGTTTGGTTGGACCAAC
* *
13470131 ACTTATGAGCTTTTTTTTGGCGTGTTTCGGTTGGACCAAC
1 ACTTATGAGCTTTTTTTGGGTGTGTTT-GGTTGGACCAAC
** *
13470171 TTTTATGAGCTTTTTTCGGGTGTGTTTG
1 ACTTATGAGCTTTTTTTGGGTGTGTTTG
13470199 ATTGATCTGA
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
38 3 0.05
39 8 0.14
40 47 0.81
ACGTcount: A:0.13, C:0.13, G:0.27, T:0.47
Consensus pattern (39 bp):
ACTTATGAGCTTTTTTTGGGTGTGTTTGGTTGGACCAAC
Found at i:13480367 original size:27 final size:27
Alignment explanation
Indices: 13480335--13480386 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
13480325 AGTTGCCAGC
13480335 ACAGT-ATATGTGGCAAAGCCACCAGTA
1 ACAGTAAT-TGTGGCAAAGCCACCAGTA
*
13480362 ACAGTAATTGTGGCAGAGCCACCAG
1 ACAGTAATTGTGGCAAAGCCACCAG
13480387 AAATAGTACT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (27 bp):
ACAGTAATTGTGGCAAAGCCACCAGTA
Found at i:13480394 original size:27 final size:27
Alignment explanation
Indices: 13480335--13480394 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
13480325 AGTTGCCAGC
*
13480335 ACAGT-ATATGTGGCAAAGCCACCAGTA
1 ACAGTAAT-TGTGGCAAAGCCACCAGAA
*
13480362 ACAGTAATTGTGGCAGAGCCACCAGAA
1 ACAGTAATTGTGGCAAAGCCACCAGAA
*
13480389 ATAGTA
1 ACAGTA
13480395 CTTCCTTCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 27 0.93
28 2 0.07
ACGTcount: A:0.38, C:0.20, G:0.23, T:0.18
Consensus pattern (27 bp):
ACAGTAATTGTGGCAAAGCCACCAGAA
Found at i:13480570 original size:27 final size:27
Alignment explanation
Indices: 13480554--13480696 Score: 207
Period size: 27 Copynumber: 5.3 Consensus size: 27
13480544 CCCATTAGGG
*
13480554 GTATTTCGATAATTTTATCCATCGAGA
1 GTATTTCGATAATTTTACCCATCGAGA
*
13480581 GTATTTCTG-TAATTTTATCCATCGAGA
1 GTATTTC-GATAATTTTACCCATCGAGA
*
13480608 GTATTTCGATAATTTTACCCATCGAGG
1 GTATTTCGATAATTTTACCCATCGAGA
* *
13480635 GTATTTTGGTAATTTTACCCATCGAGA
1 GTATTTCGATAATTTTACCCATCGAGA
* *
13480662 GTATTTCGATAATTTTACCTATCGAGG
1 GTATTTCGATAATTTTACCCATCGAGA
13480689 GTATTTCG
1 GTATTTCG
13480697 GTACAGTTAA
Statistics
Matches: 105, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
26 1 0.01
27 103 0.98
28 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.41
Consensus pattern (27 bp):
GTATTTCGATAATTTTACCCATCGAGA
Found at i:13485684 original size:20 final size:21
Alignment explanation
Indices: 13485645--13485691 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
13485635 TCCTCAAGCA
*
13485645 AACAAAATAGAAAATAAAATG
1 AACAAGATAGAAAATAAAATG
*
13485666 AACAAGATA-AAATTAAAATG
1 AACAAGATAGAAAATAAAATG
13485686 AA-AAGA
1 AACAAGA
13485692 AAGCACACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 4 0.17
20 12 0.50
21 8 0.33
ACGTcount: A:0.70, C:0.04, G:0.11, T:0.15
Consensus pattern (21 bp):
AACAAGATAGAAAATAAAATG
Found at i:13489165 original size:24 final size:24
Alignment explanation
Indices: 13489138--13489268 Score: 122
Period size: 24 Copynumber: 5.4 Consensus size: 24
13489128 CCTTTTTTAT
* * *
13489138 CTTTTCATTGGTATCATTTTCGAC
1 CTTTCCATTGGTATCCTTTTCAAC
* * * *
13489162 CTTTTTCATTGGTAACCTTTCCAAT
1 C-TTTCCATTGGTATCCTTTTCAAC
*
13489187 CTTTCCA-TGGTTATCCTTTTCGAC
1 CTTTCCATTGG-TATCCTTTTCAAC
* * *
13489211 CTTTTCATTGGTAACCTTTTCAAT
1 CTTTCCATTGGTATCCTTTTCAAC
13489235 CTTTCCA-TGGTTATCCTTTTCAAC
1 CTTTCCATTGG-TATCCTTTTCAAC
13489259 CTTTCCATTG
1 CTTTCCATTG
13489269 TTTCAGAGAT
Statistics
Matches: 85, Mismatches: 17, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
23 6 0.07
24 55 0.65
25 24 0.28
ACGTcount: A:0.17, C:0.25, G:0.10, T:0.48
Consensus pattern (24 bp):
CTTTCCATTGGTATCCTTTTCAAC
Found at i:13489235 original size:48 final size:48
Alignment explanation
Indices: 13489136--13489268 Score: 196
Period size: 48 Copynumber: 2.8 Consensus size: 48
13489126 ATCCTTTTTT
* *
13489136 ATCTTTTCATTGG-TATCATTTTCGACCTTTTTCATTGGTAACCTTTCCA
1 ATCTTTCCA-TGGTTATCCTTTTCGACC-TTTTCATTGGTAACCTTTCCA
*
13489185 ATCTTTCCATGGTTATCCTTTTCGACCTTTTCATTGGTAACCTTTTCA
1 ATCTTTCCATGGTTATCCTTTTCGACCTTTTCATTGGTAACCTTTCCA
* *
13489233 ATCTTTCCATGGTTATCCTTTTCAACCTTTCCATTG
1 ATCTTTCCATGGTTATCCTTTTCGACCTTTTCATTG
13489269 TTTCAGAGAT
Statistics
Matches: 78, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
48 57 0.73
49 21 0.27
ACGTcount: A:0.17, C:0.25, G:0.10, T:0.48
Consensus pattern (48 bp):
ATCTTTCCATGGTTATCCTTTTCGACCTTTTCATTGGTAACCTTTCCA
Found at i:13497896 original size:19 final size:20
Alignment explanation
Indices: 13497859--13497896 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
13497849 CAGTTACCGA
13497859 AACATTCTAACACAATTTAT
1 AACATTCTAACACAATTTAT
13497879 AACATT-TAATCA-AATTTA
1 AACATTCTAA-CACAATTTA
13497897 AATCATTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (20 bp):
AACATTCTAACACAATTTAT
Found at i:13499009 original size:16 final size:16
Alignment explanation
Indices: 13498988--13499041 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
13498978 TTTGGTTCGC
*
13498988 TGTAATGAAATAGAGG
1 TGTAATGGAATAGAGG
*
13499004 TGTAATGGAATAGATG
1 TGTAATGGAATAGAGG
*
13499020 CGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
13499036 TGTAAT
1 TGTAAT
13499042 AGGTAAATCT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.39, C:0.02, G:0.31, T:0.28
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:13499327 original size:18 final size:17
Alignment explanation
Indices: 13499275--13499327 Score: 79
Period size: 18 Copynumber: 3.0 Consensus size: 17
13499265 TTATTATTAA
13499275 ATATAATTTAATAAAAAT
1 ATATAATTTAAT-AAAAT
13499293 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
*
13499310 ATATGAATTTACTAAAAT
1 ATAT-AATTTAATAAAAT
13499328 CATAATATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
17 9 0.27
18 24 0.73
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:13503819 original size:7 final size:7
Alignment explanation
Indices: 13503802--13503834 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
13503792 ACTAACCACA
13503802 ACTAA-T
1 ACTAACT
13503808 ACTAACT
1 ACTAACT
13503815 ACTAACT
1 ACTAACT
13503822 ACTAACT
1 ACTAACT
13503829 ACTAAC
1 ACTAAC
13503835 AGACACTTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.19
7 21 0.81
ACGTcount: A:0.45, C:0.27, G:0.00, T:0.27
Consensus pattern (7 bp):
ACTAACT
Found at i:13507716 original size:7 final size:7
Alignment explanation
Indices: 13507704--13507731 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
13507694 CCACAACTGA
13507704 TACTAAC
1 TACTAAC
13507711 TACTAAC
1 TACTAAC
13507718 TACTAAC
1 TACTAAC
13507725 TACTAAC
1 TACTAAC
13507732 AGACACTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.29, G:0.00, T:0.29
Consensus pattern (7 bp):
TACTAAC
Found at i:13514524 original size:126 final size:126
Alignment explanation
Indices: 13514299--13514526 Score: 411
Period size: 126 Copynumber: 1.8 Consensus size: 126
13514289 TAATTTCGAG
* * *
13514299 TTGACGTTTCTAATCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGGGAAGAATTTGTG
1 TTGACGTTTCTAAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATCTGTG
*
13514364 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACAGAAGAAATAATTATTTTT
66 AAATCGCGCCCTCGTGGACACGCTTTTGCTACAGTAGGTCACAGAAGAAATAATTATTTTT
*
13514425 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATCTGTG
1 TTGACGTTTCTAAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATCTGTG
13514490 AAATCGCGCCCTCGTGGACACGCTTTTGCTACAGTAG
66 AAATCGCGCCCTCGTGGACACGCTTTTGCTACAGTAG
13514527 CATGTTTGGG
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
126 97 1.00
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (126 bp):
TTGACGTTTCTAAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATCTGTG
AAATCGCGCCCTCGTGGACACGCTTTTGCTACAGTAGGTCACAGAAGAAATAATTATTTTT
Found at i:13517560 original size:17 final size:17
Alignment explanation
Indices: 13517540--13517581 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
13517530 TTTGTGCAAT
* *
13517540 TATTAATTGATAAATTG
1 TATTAATTAAAAAATTG
13517557 TATTAACTTAAAAAATTG
1 TATTAA-TTAAAAAATTG
13517575 TATTAAT
1 TATTAAT
13517582 GGTTAGTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.45, C:0.02, G:0.07, T:0.45
Consensus pattern (17 bp):
TATTAATTAAAAAATTG
Found at i:13517761 original size:116 final size:116
Alignment explanation
Indices: 13517557--13517797 Score: 439
Period size: 116 Copynumber: 2.1 Consensus size: 116
13517547 TGATAAATTG
13517557 TATTAACTTAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
1 TATTAACTTAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
* *
13517622 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAAAAT
66 AAGTACCAGTCAAAACATTTTTCCAAATCTAACATTACGTGAATGTAAAAT
13517673 TATTAACTCT-AAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTG
1 TATTAACT-TAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTG
*
13517737 TAAGTAGCAGTCAAAACATTTTTCCAAATCTAACATTACGTGAATGTAAAAT
65 TAAGTACCAGTCAAAACATTTTTCCAAATCTAACATTACGTGAATGTAAAAT
13517789 TATTAACTT
1 TATTAACTT
13517798 TGTTTAGGGT
Statistics
Matches: 121, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
115 1 0.01
116 119 0.98
117 1 0.01
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.39
Consensus pattern (116 bp):
TATTAACTTAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
AAGTACCAGTCAAAACATTTTTCCAAATCTAACATTACGTGAATGTAAAAT
Found at i:13517816 original size:23 final size:23
Alignment explanation
Indices: 13517801--13518322 Score: 193
Period size: 23 Copynumber: 21.5 Consensus size: 23
13517791 TTAACTTTGT
13517801 TTAGGGTTTTTAATTAAATTAGG
1 TTAGGGTTTTTAATTAAATTAGG
* *
13517824 TTAGGGTTTTAAAGTT-AA--GGG
1 TTAGGGTTTTTAA-TTAAATTAGG
**
13517845 TTAGGGTTTTTAAGTT-AA-GGGG
1 TTAGGGTTTTTAA-TTAAATTAGG
*
13517867 TTAGGATTTTTAATTAAATTAGG
1 TTAGGGTTTTTAATTAAATTAGG
13517890 TTAGGGCTAGGGTTTTTAATTAAATTAGGTTAGGG
1 -T-----TAGGGTTTTTAATT-AA--A--TTA-GG
13517925 TTAGGGTTTTTAATTAAATTAGG
1 TTAGGGTTTTTAATTAAATTAGG
*
13517948 GTAGGGTTTTGT-ATTAAATTAGG
1 TTAGGGTTTT-TAATTAAATTAGG
*****
13517971 TTAGGGTTGAGGGTTAAATTAGG
1 TTAGGGTTTTTAATTAAATTAGG
*
13517994 TTAGGGTTTTT-A--AAGTTAAGG
1 TTAGGGTTTTTAATTAAATT-AGG
13518015 TTTAGGGTTTTTAAGTT--A--AGG
1 -TTAGGGTTTTTAA-TTAAATTAGG
13518036 TTTAGGGTTTTTAATTAAATTAGG
1 -TTAGGGTTTTTAATTAAATTAGG
13518060 TTAGGGTTAGGTTTTTTAATTAAATTAGGTTAAGG
1 TTA--G---GG-TTTTTAATTAAA-T----T-AGG
13518095 TTAGGGTTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATT-AA--A--TTA-GG
*
13518124 TTAGGGTTTTTAATTCAATTAGG
1 TTAGGGTTTTTAATTAAATTAGG
****
13518147 TTAGGGTTTAGGGTTAAATTAGG
1 TTAGGGTTTTTAATTAAATTAGG
* ****
13518170 TTAGAGTTTAGGGTTAAATTAGG
1 TTAGGGTTTTTAATTAAATTAGG
* *
13518193 TTAAGGTTTTT-A--AAGTTAAGG
1 TTAGGGTTTTTAATTAAATT-AGG
* *
13518214 TTTAAGGTTTTTAAGTT--A--GGG
1 -TTAGGGTTTTTAA-TTAAATTAGG
*
13518235 TTTAGGATTTTTAATTAAATTAAGTTAGGG
1 -TTAGGGTTTTTAATT--A--AA-TTA-GG
13518265 TTAGGGTTTTTAATTAAATTAGG
1 TTAGGGTTTTTAATTAAATTAGG
****
13518288 TTAGGGTTTAGGGTTAAATTAGG
1 TTAGGGTTTTTAATTAAATTAGG
*
13518311 TTAGGATTTTTA
1 TTAGGGTTTTTA
13518323 TTACATCAAA
Statistics
Matches: 391, Mismatches: 47, Indels: 122
0.70 0.08 0.22
Matches are distributed among these distances:
20 12 0.03
21 58 0.15
22 40 0.10
23 146 0.37
24 16 0.04
25 3 0.01
26 3 0.01
27 1 0.00
28 6 0.02
29 80 0.20
30 9 0.02
32 2 0.01
33 2 0.01
34 5 0.01
35 8 0.02
ACGTcount: A:0.28, C:0.00, G:0.27, T:0.44
Consensus pattern (23 bp):
TTAGGGTTTTTAATTAAATTAGG
Found at i:13517855 original size:22 final size:23
Alignment explanation
Indices: 13517822--13517879 Score: 86
Period size: 22 Copynumber: 2.7 Consensus size: 23
13517812 AATTAAATTA
13517822 GGTTAGGG-TTTTAAAGTTAA-G
1 GGTTAGGGTTTTTAAAGTTAAGG
13517843 GGTTAGGGTTTTT-AAGTTAAGG
1 GGTTAGGGTTTTTAAAGTTAAGG
*
13517865 GGTTAGGATTTTTAA
1 GGTTAGGGTTTTTAA
13517880 TTAAATTAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
21 15 0.45
22 17 0.52
23 1 0.03
ACGTcount: A:0.26, C:0.00, G:0.33, T:0.41
Consensus pattern (23 bp):
GGTTAGGGTTTTTAAAGTTAAGG
Found at i:13517883 original size:21 final size:21
Alignment explanation
Indices: 13517822--13517883 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
13517812 AATTAAATTA
*
13517822 GGTTAGGGTTTTAAAGTTAAG
1 GGTTAGGGTTTTTAAGTTAAG
13517843 GGTTAGGGTTTTTAAGTTAAGG
1 GGTTAGGGTTTTTAAGTTAA-G
*
13517865 GGTTAGGATTTTTAA-TTAA
1 GGTTAGGGTTTTTAAGTTAA
13517884 ATTAGGTTAG
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
21 23 0.61
22 15 0.39
ACGTcount: A:0.27, C:0.00, G:0.31, T:0.42
Consensus pattern (21 bp):
GGTTAGGGTTTTTAAGTTAAG
Found at i:13517905 original size:29 final size:29
Alignment explanation
Indices: 13517864--13518302 Score: 296
Period size: 29 Copynumber: 15.4 Consensus size: 29
13517854 TTAAGTTAAG
*
13517864 GGGTTAGGATTTTTAATTAAATTAGGTTA
1 GGGTTAGGGTTTTTAATTAAATTAGGTTA
*
13517893 GGGCTAGGGTTTTTAATTAAATTAGGTTA
1 GGGTTAGGGTTTTTAATTAAATTAGGTTA
13517922 GGGTTAGGGTTTTTAATT-AA--A--TTA
1 GGGTTAGGGTTTTTAATTAAATTAGGTTA
13517946 GGG-TAGGGTTTTGT-ATTAAATTAGGTTA
1 GGGTTAGGGTTTT-TAATTAAATTAGGTTA
* **
13517974 GGGTTGAGGG--TTAAATTAGGTTAGGGTTTTTA
1 GGGTT-AGGGTTTTTAATTAAATTA-GG---TTA
** * **** * *
13518006 AAGTTAAGGTTTAGGGTT--TTTAAGTTAA
1 GGGTTAGGGTTTTTAATTAAATTAGGTT-A
*
13518034 GGTTTAGGGTTTTTAATTAAATTAGGTTA
1 GGGTTAGGGTTTTTAATTAAATTAGGTTA
*
13518063 GGGTTAGGTTTTTTAATTAAATTAGGTTA
1 GGGTTAGGGTTTTTAATTAAATTAGGTTA
*
13518092 AGGTTAGGGTTTTTAATTAAATTAGGTTA
1 GGGTTAGGGTTTTTAATTAAATTAGGTTA
*
13518121 GGGTTAGGGTTTTTAATTCAATTAGGTTA
1 GGGTTAGGGTTTTTAATTAAATTAGGTTA
13518150 GGGTTTAGGG-------TTAAATTAGGTTA
1 GGG-TTAGGGTTTTTAATTAAATTAGGTTA
* * **
13518173 GAGTTTAGGG--TTAAATTAGGTTAAGGTTTTTA
1 G-GGTTAGGGTTTTTAATTAAATT-AGG---TTA
** * * *
13518205 AAGTTAAGG--TTTAAGGTT--TTTAAGTTA
1 GGGTTAGGGTTTTTAA--TTAAATTAGGTTA
* *
13518232 GGGTTTAGGATTTTTAATTAAATTAAGTTA
1 GGG-TTAGGGTTTTTAATTAAATTAGGTTA
13518262 GGGTTAGGGTTTTTAATTAAATTAGGTTA
1 GGGTTAGGGTTTTTAATTAAATTAGGTTA
13518291 GGGTTTAGGGTT
1 GGG-TTAGGGTT
13518303 AAATTAGGTT
Statistics
Matches: 324, Mismatches: 49, Indels: 73
0.73 0.11 0.16
Matches are distributed among these distances:
23 31 0.10
24 10 0.03
26 2 0.01
27 6 0.02
28 39 0.12
29 162 0.50
30 43 0.13
31 17 0.05
32 9 0.03
33 5 0.02
ACGTcount: A:0.28, C:0.00, G:0.28, T:0.44
Consensus pattern (29 bp):
GGGTTAGGGTTTTTAATTAAATTAGGTTA
Found at i:13518022 original size:22 final size:22
Alignment explanation
Indices: 13517994--13518049 Score: 105
Period size: 21 Copynumber: 2.6 Consensus size: 22
13517984 TTAAATTAGG
13517994 TTAGGGTTTTTAAAGTTAAGGT
1 TTAGGGTTTTTAAAGTTAAGGT
13518016 TTAGGGTTTTT-AAGTTAAGGT
1 TTAGGGTTTTTAAAGTTAAGGT
13518037 TTAGGGTTTTTAA
1 TTAGGGTTTTTAA
13518050 TTAAATTAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.25, C:0.00, G:0.27, T:0.48
Consensus pattern (22 bp):
TTAGGGTTTTTAAAGTTAAGGT
Found at i:13518083 original size:170 final size:169
Alignment explanation
Indices: 13517814--13518315 Score: 625
Period size: 170 Copynumber: 3.0 Consensus size: 169
13517804 GGGTTTTTAA
* *
13517814 TTAAATTAGGTTAGGG-TTTTAAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGGTTAGGATTTTT
1 TTAAATTAGGTTAGGGTTTTTAAAGTTAA-GGTTAGGGTTTTTAAGTTAA-GGTTTAGGGTTTTT
* *
13517878 AATTAAATTAGGTTAGGGCTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAA
64 AATTAAATTAGGTTAGGGTTAGGATTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAA
13517943 TTAGGGTAGGGTTTTGTATTAAATTAGGTTAGGGTTGAGGG
129 TTAGGGTAGGGTTTTGTATTAAATTAGGTTAGGGTTGAGGG
13517984 TTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTAGGGTTTTTA
1 TTAAATTAGGTTAGGGTTTTTAAAGTTAAGG-TTAGGGTTTTTAAGTTAAGGTTTAGGGTTTTTA
* *
13518049 ATTAAATTAGGTTAGGGTTAGGTTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTTAATTAAAT
65 ATTAAATTAGGTTAGGGTTAGGATTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATT-AA-
* *
13518114 TAGGTTAGGGTTAGGGTTTT-TAATTCAATTAGGTTAGGGTTTAGGG
128 -A--TTAGGG-TAGGGTTTTGT-ATTAAATTAGGTTAGGGTTGAGGG
* * *
13518160 TTAAATTAGGTTAGAGTTTAGGGTTAAA-TT-AGGTTAAGGTTTTTAAAGTTAAGGTTTAAGG--
1 TTAAATTAGGTTAGGGTTT----TTAAAGTTAAGGTTAGGGTTTTT-AAGTTAAGGTTTAGGGTT
*
13518221 TTT--TT--A--A-GTTAGGGTTTAGGATTTTTAATTAAATTAAGTTAGGGTTAGGGTTTTTAAT
61 TTTAATTAAATTAGGTTAGGG-TTAGGATTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAAT
* * **
13518279 TAAATTAGGTTAGGGTTTAGGGTTAAATTAGGTTAGG
125 TAAATTAGGGTAGGGTTTTGTATTAAATTAGGTTAGG
13518316 ATTTTTATTA
Statistics
Matches: 298, Mismatches: 18, Indels: 38
0.84 0.05 0.11
Matches are distributed among these distances:
164 22 0.07
165 5 0.02
167 1 0.00
169 9 0.03
170 131 0.44
171 32 0.11
172 1 0.00
173 1 0.00
174 2 0.01
175 7 0.02
176 52 0.17
177 10 0.03
178 18 0.06
179 2 0.01
180 5 0.02
ACGTcount: A:0.28, C:0.00, G:0.28, T:0.44
Consensus pattern (169 bp):
TTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTAGGGTTTTTAAGTTAAGGTTTAGGGTTTTTAA
TTAAATTAGGTTAGGGTTAGGATTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATT
AGGGTAGGGTTTTGTATTAAATTAGGTTAGGGTTGAGGG
Found at i:13518135 original size:199 final size:199
Alignment explanation
Indices: 13517854--13518302 Score: 727
Period size: 199 Copynumber: 2.2 Consensus size: 199
13517844 GTTAGGGTTT
*
13517854 TTAAGTTAAGGGGTTAGGATTTTTAATTAAATTAGGTTAGGGCTAGGGTTTTTAATTAAATTAGG
1 TTAAGTT-A-GGGTTAGGATTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGG
* * *
13517919 TTAGGGTTAGGGTTTTTAATTAAATTAGGGTAGGGTTTTGTATTAAATTAGGTTAGGGTTGAGGG
64 TTAGGGTTAGGGTTTTTAATTAAATTAGGGTAGGGTTTAGGATTAAATTAGGTTAGAGTTGAGGG
* * *
13517984 TTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTAGGGTTTTTA
129 TTAAATTAGGTTAAGGTTTTTAAAGTTAAGGTTTAAGGTTTTTAAGTTAAGGTTTAGGATTTTTA
13518049 ATTAAA
194 ATTAAA
* * *
13518055 TTAGGTTAGGGTTAGGTTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTTAATTAAATTAGGTT
1 TTAAGTTAGGGTTAGGATTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTT
* * * *
13518120 AGGGTTAGGGTTTTTAATTCAATTAGGTTAGGGTTTAGGGTTAAATTAGGTTAGAGTTTAGGGTT
66 AGGGTTAGGGTTTTTAATTAAATTAGGGTAGGGTTTAGGATTAAATTAGGTTAGAGTTGAGGGTT
*
13518185 AAATTAGGTTAAGGTTTTTAAAGTTAAGGTTTAAGGTTTTTAAGTTAGGGTTTAGGATTTTTAAT
131 AAATTAGGTTAAGGTTTTTAAAGTTAAGGTTTAAGGTTTTTAAGTTAAGGTTTAGGATTTTTAAT
13518250 TAAA
196 TAAA
*
13518254 TTAAGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGGTT
1 TTAAGTTAGGGTTAGGATTTTTAATTAAATTAGGTTAGGG-TTAGGGTT
13518303 AAATTAGGTT
Statistics
Matches: 229, Mismatches: 18, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
199 214 0.93
200 9 0.04
201 6 0.03
ACGTcount: A:0.28, C:0.00, G:0.27, T:0.44
Consensus pattern (199 bp):
TTAAGTTAGGGTTAGGATTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTT
AGGGTTAGGGTTTTTAATTAAATTAGGGTAGGGTTTAGGATTAAATTAGGTTAGAGTTGAGGGTT
AAATTAGGTTAAGGTTTTTAAAGTTAAGGTTTAAGGTTTTTAAGTTAAGGTTTAGGATTTTTAAT
TAAA
Found at i:13518215 original size:21 final size:21
Alignment explanation
Indices: 13518183--13518248 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
13518173 GAGTTTAGGG
13518183 TTAAA-TT-AGGTTAAGGTTT
1 TTAAAGTTAAGGTTAAGGTTT
13518202 TTAAAGTTAAGGTTTAAGGTTT
1 TTAAAGTTAAGG-TTAAGGTTT
* *
13518224 TT-AAGTTAGGGTTTAGGATTT
1 TTAAAGTTAAGGTTAAGG-TTT
13518245 TTAA
1 TTAA
13518249 TTAAATTAAG
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
19 5 0.12
20 7 0.17
21 16 0.40
22 12 0.30
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.47
Consensus pattern (21 bp):
TTAAAGTTAAGGTTAAGGTTT
Found at i:13518221 original size:22 final size:22
Alignment explanation
Indices: 13518193--13518248 Score: 80
Period size: 21 Copynumber: 2.6 Consensus size: 22
13518183 TTAAATTAGG
13518193 TTAAGGTTTTTAAAGTTAAGGT
1 TTAAGGTTTTTAAAGTTAAGGT
*
13518215 TTAAGGTTTTT-AAGTTAGGGT
1 TTAAGGTTTTTAAAGTTAAGGT
13518236 TT-AGGATTTTTAA
1 TTAAGG-TTTTTAA
13518249 TTAAATTAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 3 0.10
21 16 0.52
22 12 0.39
ACGTcount: A:0.29, C:0.00, G:0.23, T:0.48
Consensus pattern (22 bp):
TTAAGGTTTTTAAAGTTAAGGT
Found at i:13518396 original size:44 final size:45
Alignment explanation
Indices: 13518328--13518414 Score: 133
Period size: 44 Copynumber: 2.0 Consensus size: 45
13518318 TTTTATTACA
*
13518328 TCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAAC
1 TCAAATAAACTTCTATTTTATTACATAAAATAATATCAAAATAAC
*
13518373 TCAAA-AAATTTCTATTCTT-TTACATAAAATAATATCAAAATA
1 TCAAATAAACTTCTATT-TTATTACATAAAATAATATCAAAATA
13518415 TTCAAAATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
44 32 0.82
45 7 0.18
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (45 bp):
TCAAATAAACTTCTATTTTATTACATAAAATAATATCAAAATAAC
Found at i:13518834 original size:18 final size:18
Alignment explanation
Indices: 13518811--13518845 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
13518801 CGGAAAAGGA
*
13518811 TACATATAAGGGTTAGGG
1 TACATATAAGGGCTAGGG
13518829 TACATATAAGGGCTAGG
1 TACATATAAGGGCTAGG
13518846 AAACGCACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (18 bp):
TACATATAAGGGCTAGGG
Found at i:13519729 original size:20 final size:20
Alignment explanation
Indices: 13519692--13519729 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
13519682 TTTATTTTTA
*
13519692 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
13519712 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
13519730 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:13520647 original size:12 final size:12
Alignment explanation
Indices: 13520623--13520667 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
13520613 ATTTTTACAG
13520623 TTTAAAAAA-AT
1 TTTAAAAAATAT
*
13520634 TTAAAAAAATAT
1 TTTAAAAAATAT
* *
13520646 TTTTAAAATTAT
1 TTTAAAAAATAT
13520658 TTTAAAAAAT
1 TTTAAAAAAT
13520668 GGAGTTAAGA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
11 8 0.30
12 19 0.70
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
TTTAAAAAATAT
Found at i:13520688 original size:11 final size:11
Alignment explanation
Indices: 13520672--13520713 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
13520662 AAAAATGGAG
13520672 TTAAGAGAAAC
1 TTAAGAGAAAC
*
13520683 TTAAGAGGAAC
1 TTAAGAGAAAC
*
13520694 TTAAGAAAAAC
1 TTAAGAGAAAC
13520705 TTAAGAGAA
1 TTAAGAGAA
13520714 TTTTTGAAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.55, C:0.07, G:0.19, T:0.19
Consensus pattern (11 bp):
TTAAGAGAAAC
Found at i:13526542 original size:17 final size:17
Alignment explanation
Indices: 13526496--13526543 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
13526486 CTCTCTTCCC
*
13526496 CTCCATCCCTCTCCCCTA
1 CTCCAACCCTCT-CCCTA
* **
13526514 CTCTAATTCTCTCCCTA
1 CTCCAACCCTCTCCCTA
13526531 CTCCAACCCTCTC
1 CTCCAACCCTCTC
13526544 ACTCTCCTCC
Statistics
Matches: 23, Mismatches: 7, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
17 15 0.65
18 8 0.35
ACGTcount: A:0.15, C:0.54, G:0.00, T:0.31
Consensus pattern (17 bp):
CTCCAACCCTCTCCCTA
Found at i:13526832 original size:39 final size:39
Alignment explanation
Indices: 13526758--13526832 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 39
13526748 AGGGAGAAGG
* * *
13526758 TCGGAGTAGAGGGAAGGATGATGGGGGAGAGGGAGAAAA
1 TCGGAGTAGAGGGAAGGATGATAGGGAAGACGGAGAAAA
*
13526797 TCGGAGTAGGGGGAAGGAT-AGTAGGGAAGACGGAGA
1 TCGGAGTAGAGGGAAGGATGA-TAGGGAAGACGGAGA
13526833 GAGATAAGAG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.03
39 30 0.97
ACGTcount: A:0.35, C:0.04, G:0.51, T:0.11
Consensus pattern (39 bp):
TCGGAGTAGAGGGAAGGATGATAGGGAAGACGGAGAAAA
Found at i:13527951 original size:13 final size:12
Alignment explanation
Indices: 13527929--13527976 Score: 60
Period size: 12 Copynumber: 3.8 Consensus size: 12
13527919 TTCAATGATA
13527929 TTTTTTGAGTTG
1 TTTTTTGAGTTG
13527941 TTTTCTTGAGTATG
1 TTTT-TTGAGT-TG
*
13527955 TTTTTCGAGTTG
1 TTTTTTGAGTTG
*
13527967 TTTCTTGAGT
1 TTTTTTGAGT
13527977 ATTTTCTGAC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
12 14 0.45
13 11 0.35
14 6 0.19
ACGTcount: A:0.10, C:0.06, G:0.23, T:0.60
Consensus pattern (12 bp):
TTTTTTGAGTTG
Found at i:13527970 original size:25 final size:26
Alignment explanation
Indices: 13527929--13527978 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
13527919 TTCAATGATA
*
13527929 TTTTTTGAGTTGTTTTCTTGAGTATG
1 TTTTTCGAGTTGTTTTCTTGAGTATG
13527955 TTTTTCGAGTTG-TTTCTTGAGTAT
1 TTTTTCGAGTTGTTTTCTTGAGTAT
13527979 TTTCTGACGG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.12, C:0.06, G:0.22, T:0.60
Consensus pattern (26 bp):
TTTTTCGAGTTGTTTTCTTGAGTATG
Found at i:13543305 original size:54 final size:54
Alignment explanation
Indices: 13543236--13543450 Score: 143
Period size: 54 Copynumber: 3.9 Consensus size: 54
13543226 ATTAAAGTCA
*
13543236 TTATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAG
1 TTATGGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAG
* * * * * ** *
13543290 TTATGGCGAATCTTATCTTCCAGAAGTCTCCCTGAAGTTGCAGCGGAGCAAA-CTA-AAG
1 TTATGGCGAATCTTATCTCCCTGAAG--T---TGCAG-TGGAGCAGATTAAAGCCACAAG
** * * ** * * *
13543348 --ACAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACATATTAAAGCTACAAG
1 TTATGGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAG
* * *
13543400 TTAT-GCTGAATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCAC
1 TTATGGC-GAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAC
13543451 CAGCCTTATC
Statistics
Matches: 115, Mismatches: 35, Indels: 22
0.67 0.20 0.13
Matches are distributed among these distances:
50 8 0.07
51 7 0.06
52 3 0.03
53 2 0.02
54 59 0.51
56 17 0.15
58 3 0.03
59 6 0.05
60 10 0.09
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (54 bp):
TTATGGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAG
Found at i:13543536 original size:143 final size:141
Alignment explanation
Indices: 13543316--13543645 Score: 437
Period size: 143 Copynumber: 2.3 Consensus size: 141
13543306 CTTCCAGAAG
* * * * *
13543316 TCTCCCTGAAGTTGCAGCGGAGCAAACTAAAGACAGCGAATCTTATTTCCTTGGCGTTGCAGTGG
1 TCTCCCTGAAGTTACAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTAGCGTTGCAGTGG
* ** * * *
13543381 AACATATTAAAGCTACAAGTTATGCTGAATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAA
66 AACAAATTAAAGCTAC-AGACA-GC-AAATCTTATCTCCCTAAAGTTGCAGAGGAGCAGATTGAA
* *
13543446 GCCACC-AGCCTTA
128 ACCACCAAACCTTA
* *
13543459 TCTCCCTAAAGTTACATCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTAGCGTTGCAGTGG
1 TCTCCCTGAAGTTACAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTAGCGTTGCAGTGG
*
13543524 AACAAATTAAAGCTACAGACAGCAAATCTTATCTCCCTGAAGTTGCAGAGGAGCAGATTGAAACC
66 AACAAATTAAAGCTACAGACAGCAAATCTTATCTCCCTAAAGTTGCAGAGGAGCAGATTGAAACC
13543589 ACCAAACCTTA
131 ACCAAACCTTA
* * * * *
13543600 TCTCTCTGAAGTTATAGCAGAGCAGACTGAAGATAGCAAATCTTAT
1 TCTCCCTGAAGTTACAGCGGAGCAGACTGAAGACAGCGAATCTTAT
13543646 CTCCTTCAGG
Statistics
Matches: 163, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
140 40 0.25
141 47 0.29
142 3 0.02
143 73 0.45
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.25
Consensus pattern (141 bp):
TCTCCCTGAAGTTACAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTAGCGTTGCAGTGG
AACAAATTAAAGCTACAGACAGCAAATCTTATCTCCCTAAAGTTGCAGAGGAGCAGATTGAAACC
ACCAAACCTTA
Found at i:13543645 original size:45 final size:45
Alignment explanation
Indices: 13543543--13543649 Score: 119
Period size: 45 Copynumber: 2.4 Consensus size: 45
13543533 AAGCTACAGA
* *
13543543 CAGCAAATCTTATCTCCCTGAAGTTGCAGAGGAGCAGATTGAAAC
1 CAGCAAATCTTATCTCCCTGAAGTTACAGAGGAGCAGACTGAAAC
* * * *
13543588 CACCAAACCTTATCTCTCTGAAGTTATAGCA-GAGCAGACTGAAGA-
1 CAGCAAATCTTATCTCCCTGAAGTTACAG-AGGAGCAGACTGAA-AC
*
13543633 TAGCAAATCTTATCTCC
1 CAGCAAATCTTATCTCC
13543650 TTCAGGTTGT
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
45 48 0.96
46 2 0.04
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (45 bp):
CAGCAAATCTTATCTCCCTGAAGTTACAGAGGAGCAGACTGAAAC
Found at i:13545594 original size:9 final size:9
Alignment explanation
Indices: 13545580--13545616 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
13545570 TGAGTTTTCG
13545580 AATTCGAAT
1 AATTCGAAT
13545589 AATTCGAAT
1 AATTCGAAT
*
13545598 AATTCAAAT
1 AATTCGAAT
13545607 AATTCGAAT
1 AATTCGAAT
13545616 A
1 A
13545617 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.49, C:0.11, G:0.08, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:13548053 original size:24 final size:24
Alignment explanation
Indices: 13548026--13548076 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
13548016 ATTTTATATG
13548026 CTTACTTTCGTTAGTTTTCCTTCC
1 CTTACTTTCGTTAGTTTTCCTTCC
13548050 CTTACTTTCGTTAGTTTTCCTTCC
1 CTTACTTTCGTTAGTTTTCCTTCC
13548074 CTT
1 CTT
13548077 TTAGATCGTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.08, C:0.29, G:0.08, T:0.55
Consensus pattern (24 bp):
CTTACTTTCGTTAGTTTTCCTTCC
Found at i:13566562 original size:8 final size:9
Alignment explanation
Indices: 13566537--13566562 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
13566527 TCGACATAGG
13566537 AAAATTTTT
1 AAAATTTTT
13566546 AAAATTTTT
1 AAAATTTTT
13566555 AAAATTTT
1 AAAATTTT
13566563 CTATTATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (9 bp):
AAAATTTTT
Found at i:13568652 original size:12 final size:12
Alignment explanation
Indices: 13568635--13568659 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
13568625 TTTAGTAATT
13568635 TAATTATTTTAA
1 TAATTATTTTAA
13568647 TAATTATTTTAA
1 TAATTATTTTAA
13568659 T
1 T
13568660 TTGGATTCGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TAATTATTTTAA
Found at i:13570153 original size:16 final size:17
Alignment explanation
Indices: 13570132--13570166 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
13570122 AATTAATTTA
*
13570132 AATTAATTAA-TTTCTC
1 AATTAAATAATTTTCTC
13570148 AATTAAATAATTTTCTC
1 AATTAAATAATTTTCTC
13570165 AA
1 AA
13570167 CCTAATTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.46
Consensus pattern (17 bp):
AATTAAATAATTTTCTC
Found at i:13574083 original size:49 final size:49
Alignment explanation
Indices: 13574005--13574147 Score: 205
Period size: 49 Copynumber: 2.9 Consensus size: 49
13573995 ATTTGAAAAT
* *
13574005 GTGATTATGTGATTTTCGTGTAAGGCCATAGCTGGGCTATGGCATCAGTAA
1 GTGA-TATGTGA-TTACGTGTAAGACCATAGCTGGGCTATGGCATCAGTAA
* * *
13574056 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCAGTAA
* *
13574105 GTGATATGTGATTACGTGTAAGACCATAGTTGGACTATGGCAT
1 GTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCAT
13574148 TGAGAAAATA
Statistics
Matches: 85, Mismatches: 7, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
49 74 0.87
50 7 0.08
51 4 0.05
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.32
Consensus pattern (49 bp):
GTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCAGTAA
Found at i:13577564 original size:62 final size:57
Alignment explanation
Indices: 13577478--13577605 Score: 159
Period size: 57 Copynumber: 2.2 Consensus size: 57
13577468 AATTGACGGT
* *
13577478 AAAAAGGATCTAGACCGGATGGGTGATCCTATCCTGATATAGCCCTCCCGAAGAATATGTGTG
1 AAAAAGGATCTAGACCGAACGGGTGAT-C--T--TGATATAGCCCTCCCGAAGAATATGTG-G
*
13577541 AAAAA-GATCTAGCCCGAACGGGTGATCTTGATATAGCCCTCCCGAAGAATATGTGG
1 AAAAAGGATCTAGACCGAACGGGTGATCTTGATATAGCCCTCCCGAAGAATATGTGG
*
13577597 AAAATGGAT
1 AAAAAGGAT
13577606 TTAGCCCAGA
Statistics
Matches: 60, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
56 5 0.08
57 30 0.50
59 1 0.02
61 1 0.02
62 18 0.30
63 5 0.08
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.23
Consensus pattern (57 bp):
AAAAAGGATCTAGACCGAACGGGTGATCTTGATATAGCCCTCCCGAAGAATATGTGG
Found at i:13587054 original size:51 final size:50
Alignment explanation
Indices: 13586994--13587178 Score: 221
Period size: 51 Copynumber: 3.7 Consensus size: 50
13586984 ACAGTTCACA
* * * *
13586994 TAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCA-TATCATTCGGTACACG
* * * *
13587045 TAGTAGCCTGCACATAGTACTACACACGTGATCGA-AGCTATTCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATATC-ATTCGGTACACG
* *
13587096 TAATAGCCTGCACATAGTACTACACATGTGACC-TATCATTTCGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATATCA-TTCGGTACACG
*
13587146 TAGTAGCTTGCACATAGTACTACACACGTGACC
1 TAGTAGCCTGCACATAGTACTACACACGTGACC
13587179 TAGCAACTTC
Statistics
Matches: 113, Mismatches: 17, Indels: 9
0.81 0.12 0.06
Matches are distributed among these distances:
49 1 0.01
50 43 0.38
51 67 0.59
52 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATATCATTCGGTACACG
Found at i:13587173 original size:101 final size:101
Alignment explanation
Indices: 13586992--13587176 Score: 300
Period size: 101 Copynumber: 1.8 Consensus size: 101
13586982 ACACAGTTCA
* *
13586992 CATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATCCGATACACGTAGTAGCCTGCA
1 CATAATAGCCTGCACATAGTACTACACATGTGACCA-TATCATCCGATACACGTAGTAGCCTGCA
13587057 CATAGTACTACACACGTGATCGAAGCTATTCGGTACG
65 CATAGTACTACACACGTGATCGAAGCTATTCGGTACG
* * *
13587094 CATAATAGCCTGCACATAGTACTACACATGTGACC-TATCATTTCGGTACACGTAGTAGCTTGCA
1 CATAATAGCCTGCACATAGTACTACACATGTGACCATATCA-TCCGATACACGTAGTAGCCTGCA
13587158 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
13587177 CCTAGCAACT
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
100 4 0.05
101 39 0.51
102 34 0.44
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (101 bp):
CATAATAGCCTGCACATAGTACTACACATGTGACCATATCATCCGATACACGTAGTAGCCTGCAC
ATAGTACTACACACGTGATCGAAGCTATTCGGTACG
Found at i:13587381 original size:30 final size:30
Alignment explanation
Indices: 13587345--13587401 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
13587335 AAAAATAATA
*
13587345 TTTCACAAAATTACATTTTTGCCCCTAAAG
1 TTTCACAAAATTACAATTTTGCCCCTAAAG
13587375 TTTCACAAAATTACAATTTTGCCCCTA
1 TTTCACAAAATTACAATTTTGCCCCTA
13587402 GATTCGGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
TTTCACAAAATTACAATTTTGCCCCTAAAG
Found at i:13590964 original size:23 final size:20
Alignment explanation
Indices: 13590938--13590989 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 20
13590928 CATTTTATGT
13590938 TTATATATTGTCTACATAAATAA
1 TTATATATTGTCTA-AT--ATAA
*
13590961 TTATAT-TTATCTAATATAA
1 TTATATATTGTCTAATATAA
*
13590980 TTATAAATTG
1 TTATATATTG
13590990 GTGTATTCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
19 9 0.36
20 2 0.08
21 2 0.08
22 6 0.24
23 6 0.24
ACGTcount: A:0.42, C:0.06, G:0.04, T:0.48
Consensus pattern (20 bp):
TTATATATTGTCTAATATAA
Found at i:13591514 original size:18 final size:18
Alignment explanation
Indices: 13591477--13591514 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
13591467 AACCAATTAG
*
13591477 ATATTTACTAAAGATCAT
1 ATATTTACTAAACATCAT
13591495 ATATTTAACTAAACAT-AT
1 ATATTT-ACTAAACATCAT
13591513 AT
1 AT
13591515 TTCATCAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.47, C:0.11, G:0.03, T:0.39
Consensus pattern (18 bp):
ATATTTACTAAACATCAT
Found at i:13592768 original size:22 final size:22
Alignment explanation
Indices: 13592725--13592775 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
13592715 TATCTTTGTC
*
13592725 TAAATTATTAATAATTTAAAAA
1 TAAATTATTAATAATATAAAAA
13592747 TAAATTATTTAA-ATATATAAAAA
1 TAAATTA-TTAATA-ATATAAAAA
*
13592770 TTAATT
1 TAAATT
13592776 TGAAGGAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 8 0.32
23 17 0.68
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
TAAATTATTAATAATATAAAAA
Found at i:13598433 original size:27 final size:27
Alignment explanation
Indices: 13598395--13598448 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
13598385 ATCAATGCCC
13598395 CTACCCCAACCTCTTCGATTATGGCTT
1 CTACCCCAACCTCTTCGATTATGGCTT
13598422 CTACCCCAACCTCTTCGATTATGGCTT
1 CTACCCCAACCTCTTCGATTATGGCTT
13598449 ATTTCATTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.19, C:0.37, G:0.11, T:0.33
Consensus pattern (27 bp):
CTACCCCAACCTCTTCGATTATGGCTT
Found at i:13599609 original size:57 final size:56
Alignment explanation
Indices: 13599516--13599630 Score: 176
Period size: 57 Copynumber: 2.0 Consensus size: 56
13599506 ATCACACTAT
* * * *
13599516 ATAGTTGATTCATAGTAAATTAGTTACCTAAAATACTGATATTCTATATTAGTTAAG
1 ATAGATGATTCATAGGAAATTAATTACCTAAAATACTAATATTCTATA-TAGTTAAG
*
13599573 ATAGATGATTCTTAGGAAATTAATTACCTAAAATACTAATATTCTATATAGTTAAG
1 ATAGATGATTCATAGGAAATTAATTACCTAAAATACTAATATTCTATATAGTTAAG
13599629 AT
1 AT
13599631 TTTGCATGTC
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
56 10 0.19
57 43 0.81
ACGTcount: A:0.41, C:0.09, G:0.11, T:0.39
Consensus pattern (56 bp):
ATAGATGATTCATAGGAAATTAATTACCTAAAATACTAATATTCTATATAGTTAAG
Found at i:13608011 original size:57 final size:57
Alignment explanation
Indices: 13607918--13608073 Score: 206
Period size: 57 Copynumber: 2.7 Consensus size: 57
13607908 CACTATATAC
* * *
13607918 CTGATTCTTAGGAGAATAGTTACCTAAAATAATGATATTCTATACAAGTTAAGATAA
1 CTGATTCTTAGAAGAATAGTTACCTAAAATATTGATATTCTATACAAGTTAAGACAA
* * * **
13607975 CTGATTCTTAGAAGACTAATTACCTAAAATATTGATATTTTATATTAGTTAAGACAA
1 CTGATTCTTAGAAGAATAGTTACCTAAAATATTGATATTCTATACAAGTTAAGACAA
* *
13608032 CTGATTCTCAAGAA-ATTAGTTACCTAAAATATTGATATTCTA
1 CTGATTCT-TAGAAGAATAGTTACCTAAAATATTGATATTCTA
13608074 ATTTAGTTAA
Statistics
Matches: 86, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
57 82 0.95
58 4 0.05
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (57 bp):
CTGATTCTTAGAAGAATAGTTACCTAAAATATTGATATTCTATACAAGTTAAGACAA
Found at i:13614134 original size:29 final size:30
Alignment explanation
Indices: 13614075--13614132 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
13614065 TCCGAGCCTT
*
13614075 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
13614105 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
13614133 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:13614362 original size:13 final size:13
Alignment explanation
Indices: 13614344--13614375 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
13614334 TTTCCAGCAA
13614344 TTATGAATTTATT
1 TTATGAATTTATT
13614357 TTATGAATTTATT
1 TTATGAATTTATT
*
13614370 TGATGA
1 TTATGA
13614376 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:13614550 original size:50 final size:50
Alignment explanation
Indices: 13614470--13614655 Score: 266
Period size: 50 Copynumber: 3.7 Consensus size: 50
13614460 ATTTGGGTAA
13614470 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * * *
13614520 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * * *
13614570 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
*
13614620 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGC
13614656 TTTGGCATGT
Statistics
Matches: 120, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
49 1 0.01
50 90 0.75
51 29 0.24
ACGTcount: A:0.27, C:0.25, G:0.30, T:0.18
Consensus pattern (50 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:13621189 original size:29 final size:30
Alignment explanation
Indices: 13621130--13621187 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
13621120 TCCGAGCCTT
*
13621130 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
13621160 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
13621188 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:13621416 original size:13 final size:13
Alignment explanation
Indices: 13621398--13621429 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
13621388 TTTCCAGCAA
13621398 TTATGAATTTATT
1 TTATGAATTTATT
13621411 TTATGAATTTATT
1 TTATGAATTTATT
*
13621424 TGATGA
1 TTATGA
13621430 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:13621637 original size:50 final size:50
Alignment explanation
Indices: 13621524--13621765 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
13621514 ATTTGGGTAA
* * *
13621524 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
13621580 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
13621630 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
13621680 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
13621730 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
13621766 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:13621713 original size:100 final size:103
Alignment explanation
Indices: 13621524--13621773 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
13621514 ATTTGGGTAA
13621524 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
13621589 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
13621630 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
13621692 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
13621730 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
13621774 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:13629514 original size:33 final size:32
Alignment explanation
Indices: 13629433--13629523 Score: 94
Period size: 33 Copynumber: 2.8 Consensus size: 32
13629423 TGGTCCAACG
* ** *
13629433 ATGGTCTTACATTCAAGGTGCCATACCCAGTT
1 ATGGTCTTACATTTAAAATGCCATACCCAGCT
*
13629465 ATGGTCTTTTCA-TTAAAATGCCATAGCCCAGCT
1 ATGGTC-TTACATTTAAAATGCCATA-CCCAGCT
13629498 ATGGTCTTACATTTAAACATTGCCAT
1 ATGGTCTTACATTTAAA-A-TGCCAT
13629524 GTTCCAACCA
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
32 20 0.42
33 21 0.44
34 1 0.02
35 6 0.12
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.34
Consensus pattern (32 bp):
ATGGTCTTACATTTAAAATGCCATACCCAGCT
Found at i:13637640 original size:8 final size:9
Alignment explanation
Indices: 13637620--13637648 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
13637610 TCACCCCAAC
13637620 TTTTACAAT
1 TTTTACAAT
13637629 TTTTACAAT
1 TTTTACAAT
13637638 TTTTACAAT
1 TTTTACAAT
13637647 TT
1 TT
13637649 AGCCCCTCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.31, C:0.10, G:0.00, T:0.59
Consensus pattern (9 bp):
TTTTACAAT
Found at i:13648117 original size:94 final size:94
Alignment explanation
Indices: 13647956--13648143 Score: 367
Period size: 94 Copynumber: 2.0 Consensus size: 94
13647946 GGAGGAACTG
13647956 ATCCTCCTATGGGGGGATTAGCAAGTGGAGGTATGAATAATTAGCTATTTTGTAGGTATTTCTTA
1 ATCCTCCTATGGGGGGATTAGCAAGTGGAGGTATGAATAATTAGCTATTTTGTAGGTATTTCTTA
*
13648021 ATGCATTAGCTGTTCAGGAGAGGAAGAAT
66 ATGCATTAGCTATTCAGGAGAGGAAGAAT
13648050 ATCCTCCTATGGGGGGATTAGCAAGTGGAGGTATGAATAATTAGCTATTTTGTAGGTATTTCTTA
1 ATCCTCCTATGGGGGGATTAGCAAGTGGAGGTATGAATAATTAGCTATTTTGTAGGTATTTCTTA
13648115 ATGCATTAGCTATTCAGGAGAGGAAGAAT
66 ATGCATTAGCTATTCAGGAGAGGAAGAAT
13648144 CTAAAACCCT
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 93 1.00
ACGTcount: A:0.29, C:0.11, G:0.27, T:0.33
Consensus pattern (94 bp):
ATCCTCCTATGGGGGGATTAGCAAGTGGAGGTATGAATAATTAGCTATTTTGTAGGTATTTCTTA
ATGCATTAGCTATTCAGGAGAGGAAGAAT
Found at i:13652510 original size:26 final size:26
Alignment explanation
Indices: 13652481--13652557 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 26
13652471 TTTCTCATCC
13652481 CAATTTTACCCATTG-TAAAATTTTGA
1 CAATTTTACCC-TTGATAAAATTTTGA
* *
13652507 CAATTTAACCCTTGATAAAGTTTTGA
1 CAATTTTACCCTTGATAAAATTTTGA
*
13652533 CAATTTTACCC-TGTTAAAATTTTGA
1 CAATTTTACCCTTGATAAAATTTTGA
13652558 GAAAATTCGT
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
25 15 0.33
26 30 0.67
ACGTcount: A:0.34, C:0.16, G:0.09, T:0.42
Consensus pattern (26 bp):
CAATTTTACCCTTGATAAAATTTTGA
Found at i:13660863 original size:43 final size:43
Alignment explanation
Indices: 13660802--13660887 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
13660792 AGAAAAGGGA
13660802 GAAGATATGATAAGTGTGTGATGAATGAAACAAATAGCAAATG
1 GAAGATATGATAAGTGTGTGATGAATGAAACAAATAGCAAATG
13660845 GAAGATATGATAAGTGTGTGATGAATGAAACAAATAGCAAATG
1 GAAGATATGATAAGTGTGTGATGAATGAAACAAATAGCAAATG
13660888 TCTCTCTATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.47, C:0.05, G:0.26, T:0.23
Consensus pattern (43 bp):
GAAGATATGATAAGTGTGTGATGAATGAAACAAATAGCAAATG
Found at i:13661533 original size:88 final size:87
Alignment explanation
Indices: 13661384--13661569 Score: 327
Period size: 88 Copynumber: 2.1 Consensus size: 87
13661374 TTTTTTCTAT
*
13661384 TTTACCAAACTGTGTCAAAATAGAAAAAAAATGTCAAATTAGCATGTAAATAAGTAAGATTAAAA
1 TTTA-CAAATTGTGTCAAAATAGAAAAAAAATGTCAAATTAGCATGTAAATAAGTAAGATTAAAA
13661449 TTTCATCTTTAATTTTGTCTTAC
65 TTTCATCTTTAATTTTGTCTTAC
* *
13661472 TTTACAAATTGTGTCAAATTAGAAAAAAATATGTCAAATTAGCATTTAAATAAGTAAGATTAAAA
1 TTTACAAATTGTGTCAAAATAGAAAAAAA-ATGTCAAATTAGCATGTAAATAAGTAAGATTAAAA
13661537 TTTCATCTTTAATTTTGTCTTAC
65 TTTCATCTTTAATTTTGTCTTAC
13661560 TTTACAAATT
1 TTTACAAATT
13661570 TGTAATGAAA
Statistics
Matches: 94, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
87 23 0.24
88 71 0.76
ACGTcount: A:0.42, C:0.10, G:0.09, T:0.38
Consensus pattern (87 bp):
TTTACAAATTGTGTCAAAATAGAAAAAAAATGTCAAATTAGCATGTAAATAAGTAAGATTAAAAT
TTCATCTTTAATTTTGTCTTAC
Found at i:13666000 original size:25 final size:25
Alignment explanation
Indices: 13665948--13666001 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
13665938 AAGTACTTGA
* **
13665948 ACTTGGCTTCTTGGTTCAAATTGGT
1 ACTTGGCTTCTTGGTCCAAATTAAT
*
13665973 ACTTGGCTTTTTGGTCCAAATTAAT
1 ACTTGGCTTCTTGGTCCAAATTAAT
13665998 ACTT
1 ACTT
13666002 TTTGTGAATG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.17, G:0.19, T:0.44
Consensus pattern (25 bp):
ACTTGGCTTCTTGGTCCAAATTAAT
Found at i:13666207 original size:12 final size:13
Alignment explanation
Indices: 13666184--13666208 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13666174 AGGTACTTAA
13666184 TTTTAAATTTTTT
1 TTTTAAATTTTTT
13666197 TTTTAAATTTTT
1 TTTTAAATTTTT
13666209 GGTCATCTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTAAATTTTTT
Found at i:13676961 original size:52 final size:52
Alignment explanation
Indices: 13676900--13677005 Score: 194
Period size: 52 Copynumber: 2.0 Consensus size: 52
13676890 TGATTGGCTT
* *
13676900 TGTAGTAATAATCTGTCCTTGTGACTTGGAAGCTACTGATTGTGTCATTCTC
1 TGTAGTAATAATCTGTCCTTGTGACTTGGAAGCTACTAATTCTGTCATTCTC
13676952 TGTAGTAATAATCTGTCCTTGTGACTTGGAAGCTACTAATTCTGTCATTCTC
1 TGTAGTAATAATCTGTCCTTGTGACTTGGAAGCTACTAATTCTGTCATTCTC
13677004 TG
1 TG
13677006 GAGATATGTT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.41
Consensus pattern (52 bp):
TGTAGTAATAATCTGTCCTTGTGACTTGGAAGCTACTAATTCTGTCATTCTC
Found at i:13676996 original size:29 final size:29
Alignment explanation
Indices: 13676911--13676997 Score: 78
Period size: 29 Copynumber: 3.2 Consensus size: 29
13676901 GTAGTAATAA
*
13676911 TCTGTCCTTGTGACTTGGAAGCTACTGAT
1 TCTGTCCTTGTGACTTGGAAGCTACTAAT
* * * * *
13676940 TGTGTCATTCT--C-T-GTAG-TAATAA-
1 TCTGTCCTTGTGACTTGGAAGCTACTAAT
13676963 TCTGTCCTTGTGACTTGGAAGCTACTAAT
1 TCTGTCCTTGTGACTTGGAAGCTACTAAT
13676992 TCTGTC
1 TCTGTC
13676998 ATTCTCTGGA
Statistics
Matches: 41, Mismatches: 11, Indels: 12
0.64 0.17 0.19
Matches are distributed among these distances:
23 8 0.20
24 4 0.10
25 4 0.10
26 2 0.05
27 4 0.10
28 5 0.12
29 14 0.34
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.40
Consensus pattern (29 bp):
TCTGTCCTTGTGACTTGGAAGCTACTAAT
Found at i:13685938 original size:27 final size:27
Alignment explanation
Indices: 13685891--13685943 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
13685881 ATTTTCCAGC
* * *
13685891 AGGCTTGGCGAGTTGATGTTCGCCAAT
1 AGGCCTGGCGAGTAGATGTTCACCAAT
13685918 AGGCCTGGCGAGCTAGA-GTTCACCAA
1 AGGCCTGGCGAG-TAGATGTTCACCAA
13685944 AATGCCTGAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 19 0.86
28 3 0.14
ACGTcount: A:0.23, C:0.23, G:0.32, T:0.23
Consensus pattern (27 bp):
AGGCCTGGCGAGTAGATGTTCACCAAT
Found at i:13689218 original size:20 final size:20
Alignment explanation
Indices: 13689195--13689298 Score: 59
Period size: 20 Copynumber: 5.1 Consensus size: 20
13689185 AAAGTGTATT
13689195 CAGGGGTACCGAAGTACAAA
1 CAGGGGTACCGAAGTACAAA
* * * *
13689215 CAGGGGCA-CGTATGTGCAATT
1 CAGGGGTACCG-AAGTACAA-A
*
13689236 CAAGGGTACCGAAGTACAAA
1 CAGGGGTACCGAAGTACAAA
* * * * *
13689256 TAGGGG-AACGTATGTGCAATT
1 CAGGGGTACCG-AAGTACAA-A
*
13689277 CAGGGGTATCGAAGTACAAA
1 CAGGGGTACCGAAGTACAAA
13689297 CA
1 CA
13689299 AGGGCACGTA
Statistics
Matches: 58, Mismatches: 20, Indels: 12
0.64 0.22 0.13
Matches are distributed among these distances:
19 5 0.09
20 25 0.43
21 23 0.40
22 5 0.09
ACGTcount: A:0.36, C:0.17, G:0.30, T:0.17
Consensus pattern (20 bp):
CAGGGGTACCGAAGTACAAA
Found at i:13689246 original size:41 final size:41
Alignment explanation
Indices: 13689161--13689482 Score: 380
Period size: 41 Copynumber: 7.9 Consensus size: 41
13689151 GATTCAAAGT
* * ** * *
13689161 TACCGGAGTGCAAACAGGGGCACAAAAGTG-TATTCAGGGG
1 TACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAGGGG
*
13689201 TACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAAGGG
1 TACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAGGGG
* *
13689242 TACCGAAGTACAAATAGGGGAACGTATGTGCAATTCAGGGG
1 TACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAGGGG
* * *
13689283 TATCGAAGTACAAACAAGGGCACGTATGTGCAATTCAAGGG
1 TACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAGGGG
* * * *
13689324 TACC-AACGTATAAACGGGGGCACATAGGTGCAATTCAGGGG
1 TACCGAA-GTACAAACAGGGGCACGTATGTGCAATTCAGGGG
* *
13689365 TACCGAAGTACAAATAGGGGCATGTATGTGCAA-TCAGGGG
1 TACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAGGGG
* * * *
13689405 TACCAAAGTACAAACGGGGGCATGTATGTGCAATTTAGGGG
1 TACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAGGGG
* * * *
13689446 TACTGAAGTACAAACGGGGGCACATAGGTGCAATTCA
1 TACCGAAGTACAAACAGGGGCACGTATGTGCAATTCA
13689483 CAATAATCTT
Statistics
Matches: 240, Mismatches: 38, Indels: 7
0.84 0.13 0.02
Matches are distributed among these distances:
40 64 0.27
41 174 0.73
42 2 0.01
ACGTcount: A:0.34, C:0.17, G:0.31, T:0.19
Consensus pattern (41 bp):
TACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAGGGG
Found at i:13689321 original size:21 final size:21
Alignment explanation
Indices: 13689218--13689323 Score: 67
Period size: 21 Copynumber: 5.1 Consensus size: 21
13689208 GTACAAACAG
13689218 GGGCACGTATGTGCAATTCAA
1 GGGCACGTATGTGCAATTCAA
* * * * *
13689239 GGGTACCG-AAGTACAAAT-AG
1 GGGCA-CGTATGTGCAATTCAA
* *
13689259 GGGAACGTATGTGCAATTCAG
1 GGGCACGTATGTGCAATTCAA
* * * *
13689280 GGGTATCG-AAGTACAA-ACAA
1 GGGCA-CGTATGTGCAATTCAA
13689300 GGGCACGTATGTGCAATTCAA
1 GGGCACGTATGTGCAATTCAA
13689321 GGG
1 GGG
13689324 TACCAACGTA
Statistics
Matches: 61, Mismatches: 18, Indels: 12
0.67 0.20 0.13
Matches are distributed among these distances:
19 4 0.07
20 24 0.39
21 29 0.48
22 4 0.07
ACGTcount: A:0.33, C:0.16, G:0.31, T:0.20
Consensus pattern (21 bp):
GGGCACGTATGTGCAATTCAA
Found at i:13689465 original size:122 final size:122
Alignment explanation
Indices: 13689192--13689482 Score: 413
Period size: 122 Copynumber: 2.4 Consensus size: 122
13689182 ACAAAAGTGT
* * *
13689192 ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAAGGGTACCGAAGTACAAAT
1 ATTCAGGGGTA-CGAAGTACAAACGGGGGCACATAGGTGCAATTCAAGGGTACCGAAGTACAAAT
* *
13689257 AGGGGAACGTATGTGCAATTCAGGGGTATCGAAGTACAAACAAGGGCACGTATGTGCA
65 AGGGGAACGTATGTGCAATTCAGGGGTACCAAAGTACAAACAAGGGCACGTATGTGCA
* * * *
13689315 ATTCAAGGGTACCAACGTATAAACGGGGGCACATAGGTGCAATTCAGGGGTACCGAAGTACAAAT
1 ATTCAGGGGTACGAA-GTACAAACGGGGGCACATAGGTGCAATTCAAGGGTACCGAAGTACAAAT
* * ** *
13689380 AGGGGCATGTATGTGCAA-TCAGGGGTACCAAAGTACAAACGGGGGCATGTATGTGCA
65 AGGGGAACGTATGTGCAATTCAGGGGTACCAAAGTACAAACAAGGGCACGTATGTGCA
*
13689437 ATTTAGGGGTACTGAAGTACAAACGGGGGCACATAGGTGCAATTCA
1 ATTCAGGGGTAC-GAAGTACAAACGGGGGCACATAGGTGCAATTCA
13689483 CAATAATCTT
Statistics
Matches: 148, Mismatches: 18, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
122 76 0.51
123 72 0.49
ACGTcount: A:0.33, C:0.17, G:0.31, T:0.19
Consensus pattern (122 bp):
ATTCAGGGGTACGAAGTACAAACGGGGGCACATAGGTGCAATTCAAGGGTACCGAAGTACAAATA
GGGGAACGTATGTGCAATTCAGGGGTACCAAAGTACAAACAAGGGCACGTATGTGCA
Done.