Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 49 of 196
Found at i:13695752 original size:25 final size:25
Alignment explanation
Indices: 13695718--13695766 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
13695708 CTCAAATCAC
*
13695718 GAGCATTAAAGATGATAAAGCATTT
1 GAGCATTAAAGATGATAAAACATTT
13695743 GAGCATTAAAGATGATAAAACATT
1 GAGCATTAAAGATGATAAAACATT
13695767 CACCCTAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.47, C:0.08, G:0.18, T:0.27
Consensus pattern (25 bp):
GAGCATTAAAGATGATAAAACATTT
Found at i:13696277 original size:43 final size:43
Alignment explanation
Indices: 13696229--13696315 Score: 147
Period size: 43 Copynumber: 2.0 Consensus size: 43
13696219 GGATAAAGTG
* *
13696229 TTAAGTTATCTTCCCGAAATTGCCATGACAATTCTGTTGGCAA
1 TTAAGTCATCTTCCCGAAATTGCCATGACAATTCTATTGGCAA
*
13696272 TTAAGTCATCTTCCCGAAATTGCCATGGCAATTCTATTGGCAA
1 TTAAGTCATCTTCCCGAAATTGCCATGACAATTCTATTGGCAA
13696315 T
1 T
13696316 CAATCTCACC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (43 bp):
TTAAGTCATCTTCCCGAAATTGCCATGACAATTCTATTGGCAA
Found at i:13708129 original size:41 final size:40
Alignment explanation
Indices: 13708084--13708247 Score: 267
Period size: 40 Copynumber: 4.1 Consensus size: 40
13708074 AATATATTTA
* *
13708084 TTTTTTTAATTTTAAAATATTTTTTACATACTTTTTTAAT
1 TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTAAT
*
13708124 TTTTTTTAAATTTTTAAATATTTTTAAAATACTTTTTTTAA-
1 TTTTTTT-AATTTTAAAATATTTTTAAAATAC-TTTTTTAAT
*
13708165 TTTTTTTAATTTTAAAATAATTTTAAAATACTTTTTTAAT
1 TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTAAT
13708205 TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTAAT
1 TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTAAT
13708245 TTT
1 TTT
13708248 CTAAAATTTT
Statistics
Matches: 115, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
39 8 0.07
40 71 0.62
41 28 0.24
42 8 0.07
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (40 bp):
TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTAAT
Found at i:13708137 original size:18 final size:18
Alignment explanation
Indices: 13708116--13708151 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
13708106 TTTACATACT
* *
13708116 TTTTTAATTTTTTTTAAA
1 TTTTTAAATATTTTTAAA
13708134 TTTTTAAATATTTTTAAA
1 TTTTTAAATATTTTTAAA
13708152 ATACTTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTTAAATATTTTTAAA
Found at i:13708177 original size:81 final size:79
Alignment explanation
Indices: 13708083--13708265 Score: 276
Period size: 81 Copynumber: 2.3 Consensus size: 79
13708073 AAATATATTT
* * * *
13708083 ATTTTTTTAATTTTAAAATATTTTTTACATACTTTTTTAATTTTTTTTAAATTTTTAAATATTTT
1 ATTTTTTTAATTTTAAAATAATTTTAAAATACTTTTTTAATTTTTTTT-AATTTTAAAATATTTT
13708148 TAAAATACTTTTTTTA
65 TAAAATAC-TTTTTTA
13708164 ATTTTTTTAATTTTAAAATAATTTTAAAATACTTTTTTAATTTTTTTTAATTTTAAAATATTTTT
1 ATTTTTTTAATTTTAAAATAATTTTAAAATACTTTTTTAATTTTTTTTAATTTTAAAATATTTTT
13708229 AAAATACTTTTTTA
66 AAAATACTTTTTTA
**
13708243 ATTTTCTAAAATTTTTAAAATAA
1 ATTTT-TTTAA-TTTTAAAATAA
13708266 AAATGGGCCA
Statistics
Matches: 94, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
79 12 0.13
80 26 0.28
81 56 0.60
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (79 bp):
ATTTTTTTAATTTTAAAATAATTTTAAAATACTTTTTTAATTTTTTTTAATTTTAAAATATTTTT
AAAATACTTTTTTA
Found at i:13708199 original size:29 final size:28
Alignment explanation
Indices: 13708166--13708228 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 28
13708156 TTTTTTTAAT
13708166 TTTTTTAATTTTAAAATAATTTTAAAATA
1 TTTTTTAATTTT-AAATAATTTTAAAATA
***
13708195 CTTTTTTAATTTTTTTTAATTTTAAAATA
1 -TTTTTTAATTTTAAATAATTTTAAAATA
13708224 TTTTT
1 TTTTT
13708229 AAAATACTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 5 0.17
29 13 0.43
30 12 0.40
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (28 bp):
TTTTTTAATTTTAAATAATTTTAAAATA
Found at i:13708242 original size:30 final size:30
Alignment explanation
Indices: 13708182--13708264 Score: 100
Period size: 30 Copynumber: 2.8 Consensus size: 30
13708172 AATTTTAAAA
* *
13708182 TAATTTTAAAATACTTTTT-TAAT-TTTTTT
1 TAATTTTAAAATA-TTTTTAAAATACTTTTT
13708211 TAATTTTAAAATATTTTTAAAATACTTTTT
1 TAATTTTAAAATATTTTTAAAATACTTTTT
*
13708241 TAATTTTCTAAA-ATTTTTAAAATA
1 TAATTTT-AAAATATTTTTAAAATA
13708265 AAAATGGGCC
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
28 5 0.10
29 16 0.33
30 24 0.50
31 3 0.06
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.58
Consensus pattern (30 bp):
TAATTTTAAAATATTTTTAAAATACTTTTT
Found at i:13718017 original size:27 final size:26
Alignment explanation
Indices: 13717971--13718104 Score: 117
Period size: 27 Copynumber: 5.0 Consensus size: 26
13717961 CATAAACGCT
*
13717971 TCCTTTAATAGAGATCGCCACAAAGGC
1 TCCTTT-ATAGAGATTGCCACAAAGGC
* *
13717998 ATCCTTTATAGATATTGCCACAAAAGC
1 -TCCTTTATAGAGATTGCCACAAAGGC
* *
13718025 TCCATTTATAGAGATTGTCACAAAGAC
1 TCC-TTTATAGAGATTGCCACAAAGGC
* *
13718052 TCCCTTT-TCAGATATTGTCACAAAGGC
1 T-CCTTTAT-AGAGATTGCCACAAAGGC
* * *
13718079 TTCCTTTACAAAGACTGCCACAAAGG
1 -TCCTTTATAGAGATTGCCACAAAGG
13718105 TGTTTCTTCC
Statistics
Matches: 87, Mismatches: 14, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
26 4 0.05
27 74 0.85
28 9 0.10
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.28
Consensus pattern (26 bp):
TCCTTTATAGAGATTGCCACAAAGGC
Found at i:13718101 original size:54 final size:52
Alignment explanation
Indices: 13717944--13718103 Score: 128
Period size: 54 Copynumber: 2.9 Consensus size: 52
13717934 ACAAAGGTCT
* * * * *
13717944 TCCTTTTCAGAGATAGTCATAAACGCTTCCTTTAATAGAGATCGCCACAAAGGCA
1 TCCTTTTCAGATATTGTCACAAAAGCTTCCTTTAA-A-AGAT-GCCACAAAGACA
* * *
13717999 TCCTTTAT-AGATATTGCCACAAAAGC-TCCATTTATAGAGATTGTCACAAAGAC-
1 TCCTTT-TCAGATATTGTCACAAAAGCTTCC-TTTA-AAAGA-TGCCACAAAGACA
*
13718052 TCCCTTTTCAGATATTGTCACAAAGGCTTCCTTTACAAAGACTGCCACAAAG
1 T-CCTTTTCAGATATTGTCACAAAAGCTTCCTTTA-AAAGA-TGCCACAAAG
13718104 GTGTTTCTTC
Statistics
Matches: 84, Mismatches: 14, Indels: 15
0.74 0.12 0.13
Matches are distributed among these distances:
53 2 0.02
54 53 0.63
55 27 0.32
56 2 0.02
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (52 bp):
TCCTTTTCAGATATTGTCACAAAAGCTTCCTTTAAAAGATGCCACAAAGACA
Found at i:13719423 original size:15 final size:16
Alignment explanation
Indices: 13719390--13719420 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
13719380 ATCTTGCATG
*
13719390 GATTAATTTTTTATTT
1 GATTAAGTTTTTATTT
13719406 GATTAAGTTTTTATT
1 GATTAAGTTTTTATT
13719421 GATATTCGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.00, G:0.10, T:0.65
Consensus pattern (16 bp):
GATTAAGTTTTTATTT
Found at i:13720050 original size:12 final size:12
Alignment explanation
Indices: 13720033--13720061 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
13720023 GCATGGTCAA
13720033 ATTGTTGGCACC
1 ATTGTTGGCACC
13720045 ATTGTTGGCACC
1 ATTGTTGGCACC
13720057 ATTGT
1 ATTGT
13720062 AACGATGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.21, G:0.24, T:0.38
Consensus pattern (12 bp):
ATTGTTGGCACC
Found at i:13720136 original size:55 final size:56
Alignment explanation
Indices: 13720029--13720141 Score: 183
Period size: 55 Copynumber: 2.0 Consensus size: 56
13720019 CATAGCATGG
*
13720029 TCAAATTGTTGGCACCATTGTTGGCACCATTGTAACGATGTAAAATAATTATTAAGT
1 TCAAATTGTTGGCACCATTGTTGG-ACCATTGTAACGATGTAAAAGAATTATTAAGT
**
13720086 TCAAATTGTTGGCACCATTGTTGG-GGATTGTAACGATGTAAAAGAATTATTAAGT
1 TCAAATTGTTGGCACCATTGTTGGACCATTGTAACGATGTAAAAGAATTATTAAGT
13720141 T
1 T
13720142 AATTTTTTTT
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
55 29 0.55
57 24 0.45
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.35
Consensus pattern (56 bp):
TCAAATTGTTGGCACCATTGTTGGACCATTGTAACGATGTAAAAGAATTATTAAGT
Found at i:13723017 original size:36 final size:36
Alignment explanation
Indices: 13722977--13723047 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
13722967 GGCATTGGCC
* *
13722977 ATCTTGAAAATAAAAGAAGAGTTGTTATTAAAATTA
1 ATCTTGAAAAGAAAAGAAAAGTTGTTATTAAAATTA
*
13723013 ATCTTGAAAAGAAAGGAAAAGTTGTTATTAAAATT
1 ATCTTGAAAAGAAAAGAAAAGTTGTTATTAAAATT
13723048 CTAACGGTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.49, C:0.03, G:0.15, T:0.32
Consensus pattern (36 bp):
ATCTTGAAAAGAAAAGAAAAGTTGTTATTAAAATTA
Found at i:13732402 original size:62 final size:62
Alignment explanation
Indices: 13732276--13732401 Score: 200
Period size: 61 Copynumber: 2.0 Consensus size: 62
13732266 TCGTATTACT
* * **
13732276 AAATTCACATTAAAAAATAAAAAATTAAAATAAAATAAAATTTGTTATAATTATACATTTAA
1 AAATTCACATTAAAAAATAAAAAACTAAAATAAAACAAAAAATGTTATAATTATACATTTAA
*
13732338 AAATTCACATT-AAAAATAAAAAACTAAATTAAAACAAAAAATGTTATAATTATACATTTAA
1 AAATTCACATTAAAAAATAAAAAACTAAAATAAAACAAAAAATGTTATAATTATACATTTAA
13732399 AAA
1 AAA
13732402 AATTATAATT
Statistics
Matches: 59, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
61 48 0.81
62 11 0.19
ACGTcount: A:0.61, C:0.06, G:0.02, T:0.31
Consensus pattern (62 bp):
AAATTCACATTAAAAAATAAAAAACTAAAATAAAACAAAAAATGTTATAATTATACATTTAA
Found at i:13743524 original size:165 final size:165
Alignment explanation
Indices: 13743252--13743582 Score: 635
Period size: 165 Copynumber: 2.0 Consensus size: 165
13743242 TAGGGACAAA
*
13743252 ATTGTAAGTAATTAAAAGTATAGGGGCAAAATAGTAATTTTCCAAAGATATGTATTGGGCCGAAT
1 ATTGTAAGTAATTAAAAGTATAGGGGCAAAATAGTAATTCTCCAAAGATATGTATTGGGCCGAAT
13743317 TGAATATGAATTATATTAAATTGAGTTAAACTTATTCGTATAGATCTGGATGGACCTAACACGGA
66 TGAATATGAATTATATTAAATTGAGTTAAACTTATTCGTATAGATCTGGATGGACCTAACACGGA
13743382 GTTAGATCGAGAAAAAGAGAAAGTTTCAAATTAGT
131 GTTAGATCGAGAAAAAGAGAAAGTTTCAAATTAGT
13743417 ATTGTAAGTAATTAAAAGTATAGGGGCAAAATAGTAATTCTCCAAAGATATGTATTGGGCCGAAT
1 ATTGTAAGTAATTAAAAGTATAGGGGCAAAATAGTAATTCTCCAAAGATATGTATTGGGCCGAAT
*
13743482 TGAATATGAATTATATTAAATTGAGTTAAATTTATTCGTATAGATCTGGATGGACCTAACACGGA
66 TGAATATGAATTATATTAAATTGAGTTAAACTTATTCGTATAGATCTGGATGGACCTAACACGGA
*
13743547 GTTAGATCGAGGAAAAGAGAAAGTTTCAAATTAGT
131 GTTAGATCGAGAAAAAGAGAAAGTTTCAAATTAGT
13743582 A
1 A
13743583 GCTTACGAAT
Statistics
Matches: 163, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
165 163 1.00
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (165 bp):
ATTGTAAGTAATTAAAAGTATAGGGGCAAAATAGTAATTCTCCAAAGATATGTATTGGGCCGAAT
TGAATATGAATTATATTAAATTGAGTTAAACTTATTCGTATAGATCTGGATGGACCTAACACGGA
GTTAGATCGAGAAAAAGAGAAAGTTTCAAATTAGT
Found at i:13743898 original size:25 final size:25
Alignment explanation
Indices: 13743838--13743910 Score: 92
Period size: 25 Copynumber: 2.9 Consensus size: 25
13743828 GAGCGTCTTG
*
13743838 ATATTTGGCTCTCACAAGCTTCCCA
1 ATATTTGGCTCTCACGAGCTTCCCA
* *
13743863 ATACTTGGCTCTCACGAGCTTCCCG
1 ATATTTGGCTCTCACGAGCTTCCCA
* * *
13743888 TTATTTAGCTCTCATGAGCTTCC
1 ATATTTGGCTCTCACGAGCTTCC
13743911 TGATTAATGA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.19, C:0.32, G:0.15, T:0.34
Consensus pattern (25 bp):
ATATTTGGCTCTCACGAGCTTCCCA
Found at i:13743948 original size:25 final size:25
Alignment explanation
Indices: 13743871--13743968 Score: 90
Period size: 25 Copynumber: 3.9 Consensus size: 25
13743861 CAATACTTGG
* * *
13743871 CTCTCACGAGCTTCCCGTTATTTAG
1 CTCTCATGAGCTTCCCGTTATATAA
* *
13743896 CTCTCATGAGCTTCCTGATTA-ATGA
1 CTCTCATGAGCTTCCCG-TTATATAA
* * *
13743921 CTCTCTTGAGCTTCCTGTTATACAA
1 CTCTCATGAGCTTCCCGTTATATAA
* *
13743946 CTCACGTGAGCTTCCCGTTATAT
1 CTCTCATGAGCTTCCCGTTATAT
13743969 GGCTCGGAAG
Statistics
Matches: 59, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
24 3 0.05
25 53 0.90
26 3 0.05
ACGTcount: A:0.19, C:0.29, G:0.15, T:0.37
Consensus pattern (25 bp):
CTCTCATGAGCTTCCCGTTATATAA
Found at i:13749790 original size:17 final size:17
Alignment explanation
Indices: 13749748--13749790 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
13749738 TTTCCAATTT
*
13749748 TTATAAATATTATATAA
1 TTATAAATATTATAAAA
*
13749765 TTAAAAATATTA-AAAA
1 TTATAAATATTATAAAA
13749781 TTATACAATA
1 TTATA-AATA
13749791 ATGCTAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 7 0.32
17 15 0.68
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (17 bp):
TTATAAATATTATAAAA
Found at i:13749992 original size:37 final size:36
Alignment explanation
Indices: 13749938--13750010 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 36
13749928 ATATATATAT
13749938 ATATATATATTTTTAATTTAGAATTTAATCATATTA
1 ATATATATATTTTTAATTTAGAATTTAATCATATTA
*
13749974 ATATTTATATTCTTTAATTTAGAATTTAATCATATTA
1 ATATATATATT-TTTAATTTAGAATTTAATCATATTA
13750011 TCATAAAATT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
36 10 0.29
37 25 0.71
ACGTcount: A:0.40, C:0.04, G:0.03, T:0.53
Consensus pattern (36 bp):
ATATATATATTTTTAATTTAGAATTTAATCATATTA
Found at i:13750683 original size:15 final size:15
Alignment explanation
Indices: 13750657--13750704 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
13750647 ATAACTTAAA
*
13750657 TTCAACACTTAATTT
1 TTCAATACTTAATTT
*
13750672 TTCAATATTTAATTT
1 TTCAATACTTAATTT
*
13750687 TTCAGTACTTAATATT
1 TTCAATACTTAAT-TT
13750703 TT
1 TT
13750705 AGTTTATCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
15 24 0.86
16 4 0.14
ACGTcount: A:0.31, C:0.12, G:0.02, T:0.54
Consensus pattern (15 bp):
TTCAATACTTAATTT
Found at i:13753836 original size:20 final size:19
Alignment explanation
Indices: 13753811--13753863 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 19
13753801 TTAATCATAT
*
13753811 TTAAAATGTAATTTCATTTA
1 TTAAAAT-TAATTTCACTTA
*
13753831 TTAAAAATTATTTTCACTTA
1 TT-AAAATTAATTTCACTTA
*
13753851 ATAAAATATAATT
1 TTAAAAT-TAATT
13753864 AATATTATTC
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
19 5 0.19
20 17 0.63
21 5 0.19
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.47
Consensus pattern (19 bp):
TTAAAATTAATTTCACTTA
Found at i:13753837 original size:21 final size:20
Alignment explanation
Indices: 13753808--13753856 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
13753798 TCTTTAATCA
* *
13753808 TATTTAAAATGTAATTTCATT
1 TATTAAAAAT-TAATTTCACT
*
13753829 TATTAAAAATTATTTTCACT
1 TATTAAAAATTAATTTCACT
*
13753849 TAATAAAA
1 TATTAAAA
13753857 TATAATTAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 15 0.62
21 9 0.38
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.47
Consensus pattern (20 bp):
TATTAAAAATTAATTTCACT
Found at i:13754454 original size:10 final size:10
Alignment explanation
Indices: 13754439--13754463 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
13754429 TTGATTCCTA
13754439 ATTATAGGAT
1 ATTATAGGAT
13754449 ATTATAGGAT
1 ATTATAGGAT
13754459 ATTAT
1 ATTAT
13754464 TATGGGATGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.16, T:0.44
Consensus pattern (10 bp):
ATTATAGGAT
Found at i:13756702 original size:25 final size:25
Alignment explanation
Indices: 13756668--13756717 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
13756658 ACTACAAGAG
*
13756668 AAAGATTCGAGAAATGTCTAACGCT
1 AAAGATTCGAGAAATATCTAACGCT
13756693 AAAGATTCGAGAAATATCTAACGCT
1 AAAGATTCGAGAAATATCTAACGCT
13756718 TGGAATCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.42, C:0.16, G:0.18, T:0.24
Consensus pattern (25 bp):
AAAGATTCGAGAAATATCTAACGCT
Found at i:13762263 original size:46 final size:46
Alignment explanation
Indices: 13762096--13762313 Score: 206
Period size: 46 Copynumber: 4.6 Consensus size: 46
13762086 GCAGTGGAAC
* * * *
13762096 AGATTAAAGCTGAAGGCAGCAAATATTATTTCCCTAGCGTTGTAGT
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAGCATTGCAGT
* * * * *
13762142 AGATTAAAGCTGAAGGCAGTGAACCTTTTTTTCCTTGGCATTGCAATGGAAT
1 AGATTAAAGCTGAAGGCAGCGAATC-TTATTTCCCTAGCATTGC-A--G--T
* * *
13762194 AGATTAAAGTTGAAGGTAGCGAATCTTATTTCCCTGGCATTGCAGT
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAGCATTGCAGT
* ** *
13762240 AGATTAAAGCTGAAGGCAACGAATCTT-TTTCCCTAGTGTTGTAGT
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAGCATTGCAGT
*
13762285 AGATTAAAGCTGAAGG-ACGTGAATCTTAT
1 AGATTAAAGCTGAAGGCA-GCGAATCTTAT
13762314 CTTCTTGAAG
Statistics
Matches: 140, Mismatches: 24, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
44 1 0.01
45 37 0.26
46 47 0.34
47 13 0.09
48 2 0.01
50 2 0.01
51 16 0.11
52 22 0.16
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.32
Consensus pattern (46 bp):
AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAGCATTGCAGT
Found at i:13762268 original size:98 final size:98
Alignment explanation
Indices: 13762084--13762269 Score: 264
Period size: 98 Copynumber: 1.9 Consensus size: 98
13762074 TTTTGGGGCG
* * *
13762084 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCAAATATTATTTCCCTAGCGTTGTAGTAGATTAA
1 TTGCAATGGAACAGATTAAAGCTGAAGGCAGCAAATATTATTTCCCTAGCATTGCAGTAGATTAA
**
13762149 AGCTGAAGGCAGTGAACCTTTTTTTCCTTGGCA
66 AGCTGAAGGCAACGAACCTTTTTTTCCTTGGCA
* * * * * *
13762182 TTGCAATGGAATAGATTAAAGTTGAAGGTAGCGAATCTTATTTCCCTGGCATTGCAGTAGATTAA
1 TTGCAATGGAACAGATTAAAGCTGAAGGCAGCAAATATTATTTCCCTAGCATTGCAGTAGATTAA
*
13762247 AGCTGAAGGCAACGAATCTTTTT
66 AGCTGAAGGCAACGAACCTTTTT
13762270 CCCTAGTGTT
Statistics
Matches: 76, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
98 76 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (98 bp):
TTGCAATGGAACAGATTAAAGCTGAAGGCAGCAAATATTATTTCCCTAGCATTGCAGTAGATTAA
AGCTGAAGGCAACGAACCTTTTTTTCCTTGGCA
Found at i:13766251 original size:29 final size:28
Alignment explanation
Indices: 13766218--13766277 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 28
13766208 TAAATTACGT
13766218 AAGTAATGAATGCTTAGTAAGCTCGTAAA
1 AAGTAAT-AATGCTTAGTAAGCTCGTAAA
* *
13766247 AAG---TAATGCTTAGTAATCTCGTAAG
1 AAGTAATAATGCTTAGTAAGCTCGTAAA
13766272 AAGTAA
1 AAGTAA
13766278 ATTAACCGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
25 22 0.85
26 1 0.04
29 3 0.12
ACGTcount: A:0.42, C:0.10, G:0.20, T:0.28
Consensus pattern (28 bp):
AAGTAATAATGCTTAGTAAGCTCGTAAA
Found at i:13766255 original size:25 final size:25
Alignment explanation
Indices: 13766226--13766277 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
13766216 GTAAGTAATG
13766226 AATGCTTAGTAAGCTCGTAAAAAGT
1 AATGCTTAGTAAGCTCGTAAAAAGT
* *
13766251 AATGCTTAGTAATCTCGTAAGAAGT
1 AATGCTTAGTAAGCTCGTAAAAAGT
13766276 AA
1 AA
13766278 ATTAACCGCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29
Consensus pattern (25 bp):
AATGCTTAGTAAGCTCGTAAAAAGT
Found at i:13766949 original size:20 final size:20
Alignment explanation
Indices: 13766919--13766985 Score: 80
Period size: 20 Copynumber: 3.3 Consensus size: 20
13766909 GCATCATATA
*
13766919 TGCATAACAGGGGCACCGTAG
1 TGCA-AACAGGGGCACCGAAG
* * * *
13766940 TGCGAACAGGGACATCAAAG
1 TGCAAACAGGGGCACCGAAG
13766960 TGCAAACAGGGGCACCGAAG
1 TGCAAACAGGGGCACCGAAG
13766980 TGCAAA
1 TGCAAA
13766986 TCCTGTAGAA
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
20 34 0.92
21 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.31, T:0.10
Consensus pattern (20 bp):
TGCAAACAGGGGCACCGAAG
Found at i:13770683 original size:30 final size:30
Alignment explanation
Indices: 13770649--13770705 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
13770639 AAATCTATTA
13770649 TTTTACCAAACACAACTACTACCACTAATT
1 TTTTACCAAACACAACTACTACCACTAATT
*
13770679 TTTTACTAAACACAACTACTACCACTA
1 TTTTACCAAACACAACTACTACCACTA
13770706 CTCTGATGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.40, C:0.30, G:0.00, T:0.30
Consensus pattern (30 bp):
TTTTACCAAACACAACTACTACCACTAATT
Found at i:13775402 original size:13 final size:13
Alignment explanation
Indices: 13775350--13775403 Score: 60
Period size: 12 Copynumber: 4.3 Consensus size: 13
13775340 AAATATTTTC
13775350 TAAAATTAAATAA
1 TAAAATTAAATAA
**
13775363 TTTAATT-AATAA
1 TAAAATTAAATAA
13775375 TAAAATTAAAT-A
1 TAAAATTAAATAA
13775387 TAACAA-TAAATAA
1 TAA-AATTAAATAA
13775400 TAAA
1 TAAA
13775404 TATAATAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
12 20 0.59
13 14 0.41
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (13 bp):
TAAAATTAAATAA
Found at i:13779518 original size:34 final size:34
Alignment explanation
Indices: 13779446--13779520 Score: 91
Period size: 34 Copynumber: 2.2 Consensus size: 34
13779436 AACAATAAGG
* *
13779446 TAGCAAACAATATGCTTATAATAGTTCAATACAG
1 TAGCAAACAATATGCTTATAACAGTTCAATACAA
*
13779480 TAGCAAATAATATGCTTATAACA-TATCAACT-CAA
1 TAGCAAACAATATGCTTATAACAGT-TCAA-TACAA
13779514 TAGCAAA
1 TAGCAAA
13779521 AGTCATGCAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
33 1 0.03
34 34 0.94
35 1 0.03
ACGTcount: A:0.47, C:0.16, G:0.09, T:0.28
Consensus pattern (34 bp):
TAGCAAACAATATGCTTATAACAGTTCAATACAA
Found at i:13785041 original size:29 final size:25
Alignment explanation
Indices: 13784991--13785042 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
13784981 AGATTACTTG
13784991 TTTGAATTTAATTACAAACAATTAA
1 TTTGAATTTAATTACAAACAATTAA
*
13785016 TTTGAATTTAATTACAAACAATCAA
1 TTTGAATTTAATTACAAACAATTAA
13785041 TT
1 TT
13785043 CTTAAAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.46, C:0.10, G:0.04, T:0.40
Consensus pattern (25 bp):
TTTGAATTTAATTACAAACAATTAA
Found at i:13786467 original size:14 final size:14
Alignment explanation
Indices: 13786450--13786486 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
13786440 GTGCAGGACC
13786450 GGAGGTGGACCGGT
1 GGAGGTGGACCGGT
*
13786464 GGAGGTGGATCGGT
1 GGAGGTGGACCGGT
13786478 GGAGGTGGA
1 GGAGGTGGA
13786487 GGTGAAGGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.16, C:0.08, G:0.59, T:0.16
Consensus pattern (14 bp):
GGAGGTGGACCGGT
Found at i:13794475 original size:24 final size:25
Alignment explanation
Indices: 13794419--13794476 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
13794409 TCCTGATATT
*
13794419 TGGCTCTTATGAGCTTCCCATTATA
1 TGGCTCTTACGAGCTTCCCATTATA
* * *
13794444 TGGTTCTTGCGAGCTTCCCGTT-TA
1 TGGCTCTTACGAGCTTCCCATTATA
13794468 TGGCTCTTA
1 TGGCTCTTA
13794477 TGAGTTTTAC
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
24 9 0.33
25 18 0.67
ACGTcount: A:0.14, C:0.24, G:0.21, T:0.41
Consensus pattern (25 bp):
TGGCTCTTACGAGCTTCCCATTATA
Found at i:13794568 original size:24 final size:24
Alignment explanation
Indices: 13794419--13794571 Score: 91
Period size: 24 Copynumber: 6.3 Consensus size: 24
13794409 TCCTGATATT
13794419 TGGCTCTTATGAGCTTCCCATTATA
1 TGGCTCTTATGAGCTTCCCATTA-A
* ** * *
13794444 TGGTTCTTGCGAGCTTCCCGTTTA
1 TGGCTCTTATGAGCTTCCCATTAA
* * *
13794468 TGGCTCTTATGAGTTTTACGATTAA
1 TGGCTCTTATGAG-CTTCCCATTAA
* * *
13794493 TGGCTC-TCTGAAACTTCCCGA-TAT
1 TGGCTCTTATG-AGCTTCCC-ATTAA
*
13794517 TGGCTCGTT-TGAACTTCCCGA--AA
1 TGGCTC-TTATGAGCTTCCC-ATTAA
*
13794540 TTGGCTCATATGAGCTTCCCATTAA
1 -TGGCTCTTATGAGCTTCCCATTAA
13794565 TGGCTCT
1 TGGCTCT
13794572 CCGGATCTTC
Statistics
Matches: 96, Mismatches: 23, Indels: 19
0.70 0.17 0.14
Matches are distributed among these distances:
23 3 0.03
24 56 0.58
25 36 0.38
26 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.38
Consensus pattern (24 bp):
TGGCTCTTATGAGCTTCCCATTAA
Found at i:13797524 original size:40 final size:40
Alignment explanation
Indices: 13797474--13797590 Score: 198
Period size: 40 Copynumber: 2.9 Consensus size: 40
13797464 CGTTTGGAGC
* * **
13797474 AAAAGCGCCGCTAAAGAGTGAGCAATAGCGGCGTTTAATT
1 AAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTAAGG
13797514 AAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTAAGG
1 AAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTAAGG
13797554 AAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTA
1 AAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTA
13797591 TAGATAACGC
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 73 1.00
ACGTcount: A:0.33, C:0.16, G:0.30, T:0.21
Consensus pattern (40 bp):
AAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTAAGG
Found at i:13797838 original size:111 final size:111
Alignment explanation
Indices: 13797538--13798128 Score: 941
Period size: 111 Copynumber: 5.3 Consensus size: 111
13797528 AGAGTGAGCA
** *
13797538 TTAGTGGCGTTTAAGGAAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
*
13797603 CAAATAATACACCTAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGGGAC
66 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTT---GGGGGGAC
13797652 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
13797717 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGAC
66 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGAC
* * *
13797763 TTAGTGGCATTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGCGGCGTTTATAAATAACGCCG
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
13797828 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGGAC
66 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTT--GGGGGGAC
**
13797876 TTAGTGGCGTTTATTGCGAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
13797941 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGAC
66 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGAC
* ** * * * *
13797987 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAACATTAGCAGCGCTTATAAAAAAATGCC
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTAT-AGATAACGCC
* *
13798052 GCAAATAATACTCCCAGACGGTGCCGTTTTGTGTCCTTTGGGGGG-C
65 GCAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGAC
*
13798098 ATTAGTGGCGTTTTTTGTAAAGCGCCGCTAA
1 -TTAGTGGCGTTTATTGTAAAGCGCCGCTAA
13798129 TCTAGGTGTT
Statistics
Matches: 449, Mismatches: 24, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
111 165 0.37
112 79 0.18
113 106 0.24
114 99 0.22
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (111 bp):
TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGAC
Found at i:13798168 original size:224 final size:224
Alignment explanation
Indices: 13797538--13798128 Score: 988
Period size: 224 Copynumber: 2.6 Consensus size: 224
13797528 AGAGTGAGCA
** * * *
13797538 TTAGTGGCGTTTAAGGAAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCG
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGCGGCGTTTATAAATAACGCCG
*
13797603 CAAATAATACACCTAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGGGACTTAGTGGCGTTTATTG
66 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTT-GGGGGGGGACTTAGTGGCGTTTATTG
13797668 TAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCGCAAATAATACACCCAG
130 TAAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCGCAAATAATACACCCAG
13797733 ACGGTGCCGTTTTGTGGCCTTTGGGGGGAC
195 ACGGTGCCGTTTTGTGGCCTTTGGGGGGAC
*
13797763 TTAGTGGCATTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGCGGCGTTTATAAATAACGCCG
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGCGGCGTTTATAAATAACGCCG
*
13797828 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGGACTTAGTGGCGTTTATTGC
66 CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGGACTTAGTGGCGTTTATTGT
*
13797893 GAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCGCAAATAATACACCCAGA
131 AAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCGCAAATAATACACCCAGA
13797958 CGGTGCCGTTTTGTGGCCTTTGGGGGGAC
196 CGGTGCCGTTTTGTGGCCTTTGGGGGGAC
* * * * *
13797987 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAACATTAGCAGCGCTTATAAAAAAATGCC
1 TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGCGGCGTTTAT-AAATAACGCC
* * * *
13798052 GCAAATAATACTCCCAGACGGTGCCGTTTTGTGTCCTTT-GGGGGGCA-TTAGTGGCGTTTTTTG
65 GCAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGGACTTAGTGGCGTTTATTG
13798115 TAAAGCGCCGCTAA
130 TAAAGCGCCGCTAA
13798129 TCTAGGTGTT
Statistics
Matches: 344, Mismatches: 21, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
223 27 0.08
224 176 0.51
225 141 0.41
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (224 bp):
TTAGTGGCGTTTATTGTAAAGCGCCGCTAAAGAGTGAGCATTAGCGGCGTTTATAAATAACGCCG
CAAATAATACACCCAGACGGTGCCGTTTTGTGGCCTTTGGGGGGGGACTTAGTGGCGTTTATTGT
AAAGCGCCGCTAAAGAGTGAGCATTAGTGGCGTTTATAGATAACGCCGCAAATAATACACCCAGA
CGGTGCCGTTTTGTGGCCTTTGGGGGGAC
Found at i:13798758 original size:12 final size:12
Alignment explanation
Indices: 13798741--13798766 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
13798731 ATATATAACT
13798741 GTAAAAGAGGTC
1 GTAAAAGAGGTC
13798753 GTAAAAGAGGTC
1 GTAAAAGAGGTC
13798765 GT
1 GT
13798767 GCTATTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.08, G:0.35, T:0.19
Consensus pattern (12 bp):
GTAAAAGAGGTC
Found at i:13799251 original size:84 final size:83
Alignment explanation
Indices: 13799162--13799362 Score: 321
Period size: 84 Copynumber: 2.4 Consensus size: 83
13799152 TAGTTAAACT
* *
13799162 TTTAGTGGCGTTTTTAAGAAAATGCCACAAATAATGCAATTCCAGACCACGAAAACGGTGTCGTT
1 TTTAGTGGCGTTTTTAA-AAAACGCCACAAAAAATGCAATTCCAGACCACGAAAACGGTGTCGTT
13799227 TCTGTTCACAGCTGTAATA
65 TCTGTTCACAGCTGTAATA
* *
13799246 TTTAGTGGCGTTTTTCTAAAAACGCCACAAAAAATGCAATTCCAGACCACGAAAACGGTGTTGTT
1 TTTAGTGGCGTTTTT-AAAAAACGCCACAAAAAATGCAATTCCAGACCACGAAAACGGTGTCGTT
13799311 TCTGTTCACAGCTGTAATA
65 TCTGTTCACAGCTGTAATA
*
13799330 TTTAGTGGCATTTTTACCAAAAACGCCACAAAA
1 TTTAGTGGCGTTTTTA--AAAAACGCCACAAAA
13799363 CGGTGTTAAT
Statistics
Matches: 108, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
84 92 0.85
85 16 0.15
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.29
Consensus pattern (83 bp):
TTTAGTGGCGTTTTTAAAAAACGCCACAAAAAATGCAATTCCAGACCACGAAAACGGTGTCGTTT
CTGTTCACAGCTGTAATA
Found at i:13800383 original size:11 final size:11
Alignment explanation
Indices: 13800346--13800385 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
13800336 GAATATCTCA
13800346 AACT-ATGGGT
1 AACTAATGGGT
*
13800356 AACTAGTGGGT
1 AACTAATGGGT
13800367 AACTAATGGGT
1 AACTAATGGGT
13800378 AACTAATG
1 AACTAATG
13800386 TATTATCATC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
10 4 0.15
11 23 0.85
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.28
Consensus pattern (11 bp):
AACTAATGGGT
Found at i:13804666 original size:21 final size:21
Alignment explanation
Indices: 13804640--13804710 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
13804630 CTACAACTTA
* *
13804640 AAGCAGAGGCGGAAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
* *
13804661 AAGCAGCGACTGCAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
* * *
13804682 AAGCGGAGGCTGCAGCAAGAG
1 AAGCAGAGGCTGCAGCGAGGG
13804703 AAGCAGAG
1 AAGCAGAG
13804711 CAGAGCAAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.34, C:0.18, G:0.45, T:0.03
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGGG
Found at i:13805215 original size:42 final size:41
Alignment explanation
Indices: 13805035--13805448 Score: 420
Period size: 42 Copynumber: 9.9 Consensus size: 41
13805025 TTTTGTATAA
* * ***
13805035 AAGCGCCACTAAAGAACATGTTCTTTTGCGGCGTTTGT-AAA
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTT-TCTTT
** * ******
13805076 AAATGCCACTAAAGAACATGTTCTTTAGCGGCGATTAGAAAAA
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCG-TT-TTCTTT
* * *
13805119 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCTT
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTCTTT
*
13805160 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTCCCTT
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTT-CTTT
*
13805202 AAGCGCCACTAAAGAACATGTTCTTTAGCGGCGTTTT-TTCCT
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTCTT--T
* * *
13805244 AAGCGCCGCTAAAGAACATGGTCTTTAGTGGCATTTT-TTT
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTCTTT
* *
13805284 ACAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCT
1 --AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTCTT-T
* * *
13805328 AAGCGCCGCTAAAGAACATGATCTTTAGCGGTGTTTTTTTCT
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTCTT-T
* * *
13805370 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCTTTTTTTTCT
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTCTT-T
* *
13805412 AAGCGCCGCTAAAGAACATGGTCTTTAACGGCGTTTT
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTT
13805449 TGTTTGTAAA
Statistics
Matches: 329, Mismatches: 34, Indels: 19
0.86 0.09 0.05
Matches are distributed among these distances:
40 2 0.01
41 65 0.20
42 226 0.69
43 35 0.11
44 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (41 bp):
AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTCTTT
Found at i:13805233 original size:126 final size:122
Alignment explanation
Indices: 13805035--13805448 Score: 477
Period size: 126 Copynumber: 3.3 Consensus size: 122
13805025 TTTTGTATAA
* * ** **
13805035 AAGCGCCACTAAAGAACATGTTCTTTTGCGGCGTTTGTAAAAAATGCCACTAAAGAACATGTTCT
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTT-TATTAAGCGCCACTAAAGAACATGTTCT
**** ** * * *
13805100 TTAGCGGCGATTAGAAAAAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCTT
65 TTAGCGGCG-TTTTTTACTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCATTTT-TTT
*
13805160 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTCCCTTAAGCGCCACTAAAGAACATGTTC
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTT--ATTAAGCGCCACTAAAGAACATGTTC
* * *
13805225 TTTAGCGGCGTTTTTTCCTAAGCGCCGCTAAAGAACATGGTCTTTAGTGGCATTTTTTT
64 TTTAGCGGCGTTTTTTACTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCATTTTTTT
* * * *
13805284 ACAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGA
1 --AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTTAT-TAAGCGCCACTAAAGAACATGT
* * *
13805349 TCTTTAGCGGTGTTTTTTTCTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCTTTTTTTTCT
62 TCTTTAGCGGCGTTTTTTACTAAGCGCCGCTAAAGAACATGATCTTTAGCGGC-ATTTTTT-T
* *
13805412 AAGCGCCGCTAAAGAACATGGTCTTTAACGGCGTTTT
1 AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTT
13805449 TGTTTGTAAA
Statistics
Matches: 250, Mismatches: 31, Indels: 16
0.84 0.10 0.05
Matches are distributed among these distances:
124 3 0.01
125 74 0.30
126 162 0.65
127 10 0.04
128 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (122 bp):
AAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTATTAAGCGCCACTAAAGAACATGTTCTT
TAGCGGCGTTTTTTACTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCATTTTTTT
Found at i:13805449 original size:42 final size:42
Alignment explanation
Indices: 13805122--13805449 Score: 464
Period size: 42 Copynumber: 7.8 Consensus size: 42
13805112 AGAAAAAAAA
**
13805122 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCT-TAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
* **
13805163 CGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTTCCCTTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTC-TAAG
* * *
13805205 CGCCACTAAAGAACATGTTCTTTAGCGGCGTTTTTTCCTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
* * * *
13805247 CGCCGCTAAAGAACATGGTCTTTAGTGGCATTTTTTTAC-AAA
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTT-CTAAG
*
13805289 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
*
13805331 CGCCGCTAAAGAACATGATCTTTAGCGGTGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
*
13805373 CGCCGCTAAAGAACATGATCTTTAGCGGCTTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
* *
13805415 CGCCGCTAAAGAACATGGTCTTTAACGGCGTTTTT
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTT
13805450 GTTTGTAAAC
Statistics
Matches: 260, Mismatches: 22, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
40 4 0.02
41 30 0.12
42 219 0.84
43 7 0.03
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
Found at i:13807479 original size:16 final size:16
Alignment explanation
Indices: 13807432--13807480 Score: 71
Period size: 16 Copynumber: 3.1 Consensus size: 16
13807422 CGCTGTATTG
*
13807432 GAATAGAGGCGTAATG
1 GAATAGAGGCGTAATA
* *
13807448 GAATAGATGTGTAATA
1 GAATAGAGGCGTAATA
13807464 GAATAGAGGCGTAATA
1 GAATAGAGGCGTAATA
13807480 G
1 G
13807481 CAAATCAATT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.41, C:0.04, G:0.33, T:0.22
Consensus pattern (16 bp):
GAATAGAGGCGTAATA
Found at i:13807513 original size:45 final size:44
Alignment explanation
Indices: 13807457--13807554 Score: 135
Period size: 44 Copynumber: 2.2 Consensus size: 44
13807447 GGAATAGATG
13807457 TGTAATAGAATAGAGGCGTAATAGCAAATCAAT-TGTTTGGTTGAA
1 TGTAATAGAATAGAGGCGTAATAG-AAATC-ATGTGTTTGGTTGAA
* * *
13807502 TGTAATGGAATAGAGGCGTAATAGTAATCTTGTGTTTGGTTGAA
1 TGTAATAGAATAGAGGCGTAATAGAAATCATGTGTTTGGTTGAA
*
13807546 TGGAATAGA
1 TGTAATAGA
13807555 GGTGTAATAG
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
43 1 0.02
44 23 0.49
45 23 0.49
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.33
Consensus pattern (44 bp):
TGTAATAGAATAGAGGCGTAATAGAAATCATGTGTTTGGTTGAA
Found at i:13807838 original size:14 final size:15
Alignment explanation
Indices: 13807789--13807840 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
13807779 ATAAAATATA
13807789 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
13807804 TATTAAATATATTAT
1 AATTAAATATATTAT
13807819 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
13807832 AATTTAATA
1 AATTAAATA
13807841 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:13807886 original size:120 final size:121
Alignment explanation
Indices: 13807668--13808204 Score: 931
Period size: 120 Copynumber: 4.5 Consensus size: 121
13807658 ATTTAATCAT
* * *
13807668 ATTTAAACATAATTATTATTAAATATAATATAATTGAAATATATAATTTAATAAAATTCTTAATA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
*
13807733 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
66 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATA
*
13807789 AATT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
13807853 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATA
66 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATA
* *
13807909 ATTT-AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAACAAAATTCTTAATA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
13807973 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATA
66 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATA
*
13808029 ATTTGAA-ATAATTAATATTAAATATATT-TAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
13808092 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATA
66 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATA
* * * *
13808148 ATTTGAA-ATAATTAATATTAAATATATTTTAATTAAAATACATGATTTAATAAAATT
1 ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
13808205 TAAAATAATT
Statistics
Matches: 403, Mismatches: 11, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
119 118 0.29
120 280 0.69
121 5 0.01
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (121 bp):
ATTTGAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATA
Found at i:13808081 original size:17 final size:17
Alignment explanation
Indices: 13808050--13808083 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
13808040 TTAATATTAA
13808050 ATATATTTAATTAAAAT
1 ATATATTTAATTAAAAT
13808067 ATATAATTTAA-TAAAAT
1 ATAT-ATTTAATTAAAAT
13808084 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
ATATATTTAATTAAAAT
Found at i:13808215 original size:239 final size:240
Alignment explanation
Indices: 13807668--13808204 Score: 936
Period size: 239 Copynumber: 2.2 Consensus size: 240
13807658 ATTTAATCAT
* * *
13807668 ATTTAAACATAATTATTATTAAATATAATATAATTGAAATATATAATTTAATAAAATTCTTAATA
1 ATTT-AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATA
*
13807733 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATTAACAT
65 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTAACAT
*
13807798 AATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTC
130 AATTAATATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTC
13807863 TTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATA
195 TTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATA
*
13807909 ATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAACAAAATTCTTAATAA
1 ATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
*
13807974 TTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTGAA-AT
66 TTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATT-AACAT
13808038 AATTAATATTAAATATATT-TAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTC
130 AATTAATATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTC
13808102 TTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATA
195 TTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATA
* * *
13808148 ATTTGAA-ATAATTAATATTAAATATATTTTAATTAAAATACATGATTTAATAAAATT
1 ATTT-AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
13808205 TAAAATAATT
Statistics
Matches: 283, Mismatches: 11, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
239 141 0.50
240 136 0.48
241 6 0.02
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (240 bp):
ATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
TTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTAACATA
ATTAATATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCT
TATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATA
Found at i:13808299 original size:75 final size:73
Alignment explanation
Indices: 13808220--13808358 Score: 215
Period size: 75 Copynumber: 1.9 Consensus size: 73
13808210 TAATTATAAC
* * * *
13808220 TAATAAATTTTTTTATATGAATTTGTATAATTTAAAATAATTTAATAATAATATATAATTTCATA
1 TAATAAATTTTATTATATGAATTTATACAATTTAAAATAA-TTAATAATAA-ATATAATTTAATA
13808285 AAATTCTTGA
64 AAATTCTTGA
*
13808295 TAATAAATTTTATTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAA
1 TAATAAATTTTATTATATGAATTTATACAATTTAAAATAATTAATAATAAATATAATTTAATAA
13808359 TGATATATAA
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
73 13 0.22
74 9 0.15
75 37 0.63
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (73 bp):
TAATAAATTTTATTATATGAATTTATACAATTTAAAATAATTAATAATAAATATAATTTAATAAA
ATTCTTGA
Found at i:13808335 original size:37 final size:37
Alignment explanation
Indices: 13808220--13808335 Score: 101
Period size: 37 Copynumber: 3.1 Consensus size: 37
13808210 TAATTATAAC
* * *
13808220 TAATAAATTTTTTTATATGAATTTGTATAATTTAAAA
1 TAATAAATTTTATTATATGAATTTATAAAATTTAAAA
* ** * **
13808257 TAATTTAATAATAATATAT-AATTTCATAAAATTCT-TGA
1 TAA-TAAATTTTATTATATGAATTT-ATAAAATT-TAAAA
*
13808295 TAATAAATTTTATTATATGAATTTATACAATTTAAAA
1 TAATAAATTTTATTATATGAATTTATAAAATTTAAAA
13808332 TAAT
1 TAAT
13808336 TAATATTAAA
Statistics
Matches: 58, Mismatches: 16, Indels: 10
0.69 0.19 0.12
Matches are distributed among these distances:
36 1 0.02
37 31 0.53
38 25 0.43
39 1 0.02
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (37 bp):
TAATAAATTTTATTATATGAATTTATAAAATTTAAAA
Found at i:13808374 original size:91 final size:90
Alignment explanation
Indices: 13808247--13808411 Score: 269
Period size: 91 Copynumber: 1.8 Consensus size: 90
13808237 TGAATTTGTA
* *
13808247 TAATTTAAAATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAAT-AAATTTTATTAT
1 TAATTTAAAATAATTTAATAATAATATATAATTTCATAAAATTCTTAATAATAAAATGTTATTAT
13808311 ATGAATTTATACAATTTAAAATAAT
66 ATGAATTTATACAATTTAAAATAAT
* *
13808336 TAATATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAAAATGTTCTT
1 TAAT-TTAAA-ATAATTTAATAATAATATATAATTTCATAAAATTCTTAATAATAAAATGTTATT
13808401 ATATGAATTTA
64 ATATGAATTTA
13808412 CTAAAATCAA
Statistics
Matches: 69, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
89 4 0.06
90 5 0.07
91 41 0.59
92 19 0.28
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (90 bp):
TAATTTAAAATAATTTAATAATAATATATAATTTCATAAAATTCTTAATAATAAAATGTTATTAT
ATGAATTTATACAATTTAAAATAAT
Found at i:13811499 original size:13 final size:13
Alignment explanation
Indices: 13811481--13811506 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13811471 TGCTTTTGAG
13811481 TTCAAAAATAATT
1 TTCAAAAATAATT
13811494 TTCAAAAATAATT
1 TTCAAAAATAATT
13811507 CTGATTTAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (13 bp):
TTCAAAAATAATT
Found at i:13816610 original size:33 final size:32
Alignment explanation
Indices: 13816569--13816630 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
13816559 ATTTCGACTC
* * *
13816569 TTTTTAAAAAAGGTTAATGATTAAATTTAAAAT
1 TTTTTAAAAAA-ATTAAAGACTAAATTTAAAAT
13816602 TTTTTAAAAAAATTAAAGACTAAATTTAA
1 TTTTTAAAAAAATTAAAGACTAAATTTAA
13816631 CTAAAAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 15 0.58
33 11 0.42
ACGTcount: A:0.52, C:0.02, G:0.06, T:0.40
Consensus pattern (32 bp):
TTTTTAAAAAAATTAAAGACTAAATTTAAAAT
Found at i:13816644 original size:24 final size:26
Alignment explanation
Indices: 13816606--13816659 Score: 69
Period size: 24 Copynumber: 2.2 Consensus size: 26
13816596 TAAAATTTTT
*
13816606 TAAAAAAATTAAAGACT-AAATTTAAC
1 TAAAAAAATTAAAGAATCAAA-TTAAC
13816632 TAAAAAAA-T-AAGAATCAAATTAAC
1 TAAAAAAATTAAAGAATCAAATTAAC
13816656 TAAA
1 TAAA
13816660 TATATATACA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 14 0.54
25 4 0.15
26 8 0.31
ACGTcount: A:0.65, C:0.07, G:0.04, T:0.24
Consensus pattern (26 bp):
TAAAAAAATTAAAGAATCAAATTAAC
Found at i:13816689 original size:19 final size:23
Alignment explanation
Indices: 13816653--13816696 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
13816643 GAATCAAATT
13816653 AACTAAATATATATACATTA-AA
1 AACTAAATATATATACATTATAA
13816675 AACTAAAT-T-TA-ACATTATAA
1 AACTAAATATATATACATTATAA
13816695 AA
1 AA
13816697 AAAATAATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
19 6 0.29
20 6 0.29
21 1 0.05
22 8 0.38
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.32
Consensus pattern (23 bp):
AACTAAATATATATACATTATAA
Found at i:13817222 original size:31 final size:31
Alignment explanation
Indices: 13817178--13817238 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
13817168 ATGTGCATAA
*
13817178 TTAAATCAAAATAAAAATTTCTTATATATAT
1 TTAAATCAAAATAAAAATTTCATATATATAT
* * * *
13817209 TTAAATTATAATAAAAGTTTCATGTATATA
1 TTAAATCAAAATAAAAATTTCATATATATA
13817239 ATTATACTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (31 bp):
TTAAATCAAAATAAAAATTTCATATATATAT
Found at i:13826280 original size:9 final size:9
Alignment explanation
Indices: 13826266--13826463 Score: 52
Period size: 9 Copynumber: 20.9 Consensus size: 9
13826256 TGGTATAAAT
13826266 TTATAAAAA
1 TTATAAAAA
* *
13826275 TTATAAGAC
1 TTATAAAAA
*
13826284 TTGTAAAAAA
1 TTAT-AAAAA
13826294 TTCATAAAAA
1 TT-ATAAAAA
*
13826304 CTTATAAATA
1 -TTATAAAAA
*
13826314 TGATAAACAA
1 TTATAAA-AA
*
13826324 TTAT--AAT
1 TTATAAAAA
*
13826331 TTTTAATAAA
1 TTATAA-AAA
13826341 TTAT-AAAA
1 TTATAAAAA
13826349 TTAATAAAACA
1 TT-ATAAAA-A
13826360 -TATAAAACA
1 TTATAAAA-A
* *
13826369 TATTTAACATA
1 T-TATAA-AAA
**
13826380 TT-TAAATTTT
1 TTATAAA--AA
13826390 TTATAAAAA
1 TTATAAAAA
13826399 CTTATAAATAA
1 -TTATAAA-AA
*
13826410 -TATAAAATT
1 TTATAAAA-A
13826419 TTCATAAAAA
1 TT-ATAAAAA
*
13826429 TCTA-ATAAA
1 T-TATAAAAA
13826438 TTATAAAAA
1 TTATAAAAA
13826447 TT-TAAAGAA
1 TTATAAA-AA
*
13826456 TAATAAAA
1 TTATAAAA
13826464 TAAAAATTAT
Statistics
Matches: 140, Mismatches: 24, Indels: 50
0.65 0.11 0.23
Matches are distributed among these distances:
7 4 0.03
8 14 0.10
9 51 0.36
10 47 0.34
11 23 0.16
12 1 0.01
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (9 bp):
TTATAAAAA
Found at i:13826418 original size:31 final size:31
Alignment explanation
Indices: 13826383--13826449 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
13826373 TAACATATTT
* *
13826383 AAATTTTTTATAAAAA-CTTATAAATAATATA
1 AAATTTTTCATAAAAATCTAATAAATAATA-A
*
13826414 AAA-TTTTCATAAAAATCTAATAAATTATAA
1 AAATTTTTCATAAAAATCTAATAAATAATAA
13826444 AAATTT
1 AAATTT
13826450 AAAGAATAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
30 15 0.48
31 16 0.52
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.40
Consensus pattern (31 bp):
AAATTTTTCATAAAAATCTAATAAATAATAA
Found at i:13826428 original size:30 final size:31
Alignment explanation
Indices: 13826382--13826449 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 31
13826372 TTAACATATT
* * *
13826382 TAAATTTTTTATAAAAA-CTTATAAATAATA
1 TAAAATTTTCATAAAAATCTAATAAATAATA
*
13826412 TAAAATTTTCATAAAAATCTAATAAATTATA
1 TAAAATTTTCATAAAAATCTAATAAATAATA
13826443 -AAAATTT
1 TAAAATTT
13826450 AAAGAATAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 22 0.67
31 11 0.33
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.41
Consensus pattern (31 bp):
TAAAATTTTCATAAAAATCTAATAAATAATA
Found at i:13826954 original size:11 final size:10
Alignment explanation
Indices: 13826934--13826978 Score: 53
Period size: 10 Copynumber: 4.9 Consensus size: 10
13826924 CTATAAATGG
13826934 ATTTTTATAT
1 ATTTTTATAT
13826944 ATTTTTA-AT
1 ATTTTTATAT
*
13826953 A-TTTTAT-G
1 ATTTTTATAT
13826961 A-TTTTATAT
1 ATTTTTATAT
13826970 ATTTTTATA
1 ATTTTTATA
13826979 ATTATTAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
8 12 0.40
9 4 0.13
10 14 0.47
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (10 bp):
ATTTTTATAT
Found at i:13827158 original size:19 final size:19
Alignment explanation
Indices: 13827082--13827194 Score: 53
Period size: 19 Copynumber: 6.1 Consensus size: 19
13827072 ATCCATTTTT
13827082 TTTATAATT-TTTATATA-
1 TTTATAATTATTTATATAG
* ** *
13827099 TTTAAAAAAATTTAAATTA-
1 TTTATAATTATTTATA-TAG
**
13827118 TTTA-AATTATCTT-TATCT
1 TTTATAATTAT-TTATATAG
13827136 TTTATAATTATTTATATAG
1 TTTATAATTATTTATATAG
* *
13827155 TTTATTATAATTT-TATAAG
1 TTTATAATTATTTATAT-AG
13827174 TATTTATAA-TATTTATA-AG
1 --TTTATAATTATTTATATAG
13827193 TT
1 TT
13827195 ATTATTTTTT
Statistics
Matches: 72, Mismatches: 14, Indels: 20
0.68 0.13 0.19
Matches are distributed among these distances:
17 9 0.12
18 19 0.26
19 32 0.44
20 4 0.06
21 8 0.11
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.57
Consensus pattern (19 bp):
TTTATAATTATTTATATAG
Found at i:13827199 original size:19 final size:19
Alignment explanation
Indices: 13827137--13827199 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 19
13827127 TCTTTATCTT
13827137 TTATAATTATTTATATAGTTTA
1 TTATAA-TATTTATA-AG-TTA
13827159 TTATAAT-TTTATAAG-TA
1 TTATAATATTTATAAGTTA
13827176 TTTATAATATTTATAAGTTA
1 -TTATAATATTTATAAGTTA
13827196 TTAT
1 TTAT
13827200 TTTTTTGTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
17 2 0.05
18 7 0.18
19 14 0.37
20 8 0.21
21 1 0.03
22 6 0.16
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (19 bp):
TTATAATATTTATAAGTTA
Found at i:13827225 original size:9 final size:9
Alignment explanation
Indices: 13826934--13827283 Score: 66
Period size: 9 Copynumber: 36.9 Consensus size: 9
13826924 CTATAAATGG
13826934 ATTTTTAT-
1 ATTTTTATA
13826942 ATATTTT-TA
1 AT-TTTTATA
*
13826951 ATATTTTATG
1 AT-TTTTATA
13826961 A-TTTTATA
1 ATTTTTATA
13826969 TATTTTTATA
1 -ATTTTTATA
* *
13826979 ATTATTAGA
1 ATTTTTATA
13826988 ACTTTTTGAT-
1 A-TTTTT-ATA
13826998 -TTTTTAACTA
1 ATTTTT-A-TA
*
13827008 AGTTTTTATG
1 A-TTTTTATA
*
13827018 CTGTGTTTATA
1 AT-T-TTTATA
*
13827029 AGTTTTATA
1 ATTTTTATA
*
13827038 ATTATTGATA
1 ATT-TTTATA
13827048 ATTTTT-TA
1 ATTTTTATA
13827056 GAGTTTTTATA
1 -A-TTTTTATA
* *
13827067 ATATTATCCATT
1 AT-TT-T-TATA
*
13827079 TTTTTTATA
1 ATTTTTATA
13827088 ATTTTTAT-
1 ATTTTTATA
* *
13827096 ATATTTAAAA
1 AT-TTTTATA
**
13827106 AAATTTA-A
1 ATTTTTATA
13827114 ATTATTTA-A
1 ATT-TTTATA
13827123 ATTATCTT-T-
1 ATT-T-TTATA
13827132 ATCTTTTATA
1 AT-TTTTATA
13827142 ATTATTTATA
1 ATT-TTTATA
13827152 TAGTTTATTATA
1 -A-TTT-TTATA
13827164 A-TTTTATA
1 ATTTTTATA
*
13827172 AGTATTTATA
1 A-TTTTTATA
*
13827182 ATATTTATA
1 ATTTTTATA
*
13827191 AGTTATTAT-
1 A-TTTTTATA
* *
13827200 TTTTTTGTA
1 ATTTTTATA
13827209 ATTTTTTTTATA
1 A---TTTTTATA
13827221 ATTTTTATA
1 ATTTTTATA
*
13827230 AGTTTATATAA
1 A-TTTTTAT-A
*
13827241 AATTTTA-A
1 ATTTTTATA
*
13827249 TATTTTAATA
1 -ATTTTTATA
* *
13827259 AGTTTAATA
1 ATTTTTATA
13827268 ATGTTTT-T-
1 AT-TTTTATA
13827276 ATTTTTAT
1 ATTTTTAT
13827284 TTTACATTTT
Statistics
Matches: 253, Mismatches: 44, Indels: 90
0.65 0.11 0.23
Matches are distributed among these distances:
7 4 0.02
8 38 0.15
9 100 0.40
10 71 0.28
11 17 0.07
12 23 0.09
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (9 bp):
ATTTTTATA
Found at i:13827275 original size:29 final size:31
Alignment explanation
Indices: 13827207--13827276 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 31
13827197 TATTTTTTTG
* * *
13827207 TAATTTTTTTTATAATTTTTATAAGTTTATA
1 TAATATTTTTAATAATTTTAATAAGTTTATA
*
13827238 TAA-AATTTTAAT-ATTTTAATAAGTTTA-A
1 TAATATTTTTAATAATTTTAATAAGTTTATA
*
13827266 TAATGTTTTTA
1 TAATATTTTTA
13827277 TTTTTATTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
28 4 0.12
29 19 0.59
30 6 0.19
31 3 0.09
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (31 bp):
TAATATTTTTAATAATTTTAATAAGTTTATA
Found at i:13832653 original size:31 final size:32
Alignment explanation
Indices: 13832588--13832651 Score: 105
Period size: 32 Copynumber: 2.1 Consensus size: 32
13832578 TAGTAGTAGG
13832588 TTAGGATTAAAAGGTAATAAAAATAATGTGTT
1 TTAGGATTAAAAGGTAATAAAAATAATGTGTT
*
13832620 TTAGGATTACAAGGTAAT-AAAATAA-GTGTT
1 TTAGGATTAAAAGGTAATAAAAATAATGTGTT
13832650 TT
1 TT
13832652 TACACATTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 7 0.23
31 7 0.23
32 17 0.55
ACGTcount: A:0.44, C:0.02, G:0.19, T:0.36
Consensus pattern (32 bp):
TTAGGATTAAAAGGTAATAAAAATAATGTGTT
Found at i:13837567 original size:22 final size:22
Alignment explanation
Indices: 13837542--13837585 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
13837532 AAGCTCAATT
13837542 AAACTCATTAGTATTCAAGCTC
1 AAACTCATTAGTATTCAAGCTC
* *
13837564 AAACTCATTTGTATTTAAGCTC
1 AAACTCATTAGTATTCAAGCTC
13837586 TTTTTATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.36
Consensus pattern (22 bp):
AAACTCATTAGTATTCAAGCTC
Found at i:13849386 original size:17 final size:17
Alignment explanation
Indices: 13849364--13849410 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 17
13849354 ACTTAACAGA
**
13849364 AGAGTTTGCCAATCCCT
1 AGAGTTTGCCAAAACCT
13849381 AGAGTTTGCCAAAACCT
1 AGAGTTTGCCAAAACCT
*
13849398 AGAGTTCGCCAAA
1 AGAGTTTGCCAAA
13849411 TGGCGAATTC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (17 bp):
AGAGTTTGCCAAAACCT
Found at i:13859614 original size:9 final size:9
Alignment explanation
Indices: 13859600--13859657 Score: 80
Period size: 9 Copynumber: 6.4 Consensus size: 9
13859590 TTTGGTTAAA
*
13859600 AATTAACCG
1 AATTATCCG
* *
13859609 AATTAACTG
1 AATTATCCG
13859618 AATTATCCG
1 AATTATCCG
13859627 AATTATCCG
1 AATTATCCG
*
13859636 AATTACCCG
1 AATTATCCG
13859645 AATTATCCG
1 AATTATCCG
13859654 AATT
1 AATT
13859658 GAATCACTAC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 44 1.00
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (9 bp):
AATTATCCG
Found at i:13859638 original size:27 final size:27
Alignment explanation
Indices: 13859600--13859657 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
13859590 TTTGGTTAAA
*
13859600 AATTAACCGAATTAACTGAATTATCCG
1 AATTAACCGAATTAACCGAATTATCCG
* *
13859627 AATTATCCGAATTACCCGAATTATCCG
1 AATTAACCGAATTAACCGAATTATCCG
13859654 AATT
1 AATT
13859658 GAATCACTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (27 bp):
AATTAACCGAATTAACCGAATTATCCG
Found at i:13859726 original size:26 final size:26
Alignment explanation
Indices: 13859680--13859735 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 26
13859670 AATTAAATTT
13859680 TTTTTAGACTTTTAAACTTTATTTTTA
1 TTTTTAGA-TTTTAAACTTTATTTTTA
*
13859707 TTTTTAG-TTTTAGAATTTTATTTTTA
1 TTTTTAGATTTTA-AACTTTATTTTTA
13859733 TTT
1 TTT
13859736 ATTAAATTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 5 0.19
26 15 0.56
27 7 0.26
ACGTcount: A:0.23, C:0.04, G:0.05, T:0.68
Consensus pattern (26 bp):
TTTTTAGATTTTAAACTTTATTTTTA
Found at i:13861509 original size:31 final size:31
Alignment explanation
Indices: 13861451--13861510 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
13861441 GTTGAGCTTC
* * *
13861451 AATTTTTTAATTATAGTTTTAATTATATTAT
1 AATTTTTTAATTAAAATTGTAATTATATTAT
13861482 AATTTTTT-ATTAAAATTGTAATATATATT
1 AATTTTTTAATTAAAATTGTAAT-TATATT
13861511 TATTAAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 11 0.44
31 14 0.56
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.58
Consensus pattern (31 bp):
AATTTTTTAATTAAAATTGTAATTATATTAT
Found at i:13861929 original size:23 final size:23
Alignment explanation
Indices: 13861903--13861951 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
13861893 TGGATTCAAA
*
13861903 TTTAAAAAATTTCCTTAAATTGT
1 TTTAAAAAATTTCCTTAAATTCT
13861926 TTTAAAAAATTTCCTTAAATTCT
1 TTTAAAAAATTTCCTTAAATTCT
13861949 TTT
1 TTT
13861952 TTAGTACTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.37, C:0.10, G:0.02, T:0.51
Consensus pattern (23 bp):
TTTAAAAAATTTCCTTAAATTCT
Found at i:13862957 original size:23 final size:23
Alignment explanation
Indices: 13862914--13862962 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
13862904 TAAATTTTTT
* *
13862914 AAAGGTAAAAGAAATATTATTAA
1 AAAGGTAAAAGAAAAAATATTAA
*
13862937 AAAGG-AAAAGAAGAAAATATTGA
1 AAAGGTAAAAGAA-AAAATATTAA
13862960 AAA
1 AAA
13862963 TCAGTTAAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.65, C:0.00, G:0.16, T:0.18
Consensus pattern (23 bp):
AAAGGTAAAAGAAAAAATATTAA
Found at i:13864033 original size:73 final size:73
Alignment explanation
Indices: 13863867--13864040 Score: 237
Period size: 73 Copynumber: 2.4 Consensus size: 73
13863857 AAAATAAGCA
* * * *
13863867 TTAGCGGCG-TTTCCATAAAGCGCCAC-AAAATACCTAAGCCCAACGACGCCGTTTTTCGAGCTT
1 TTAGCGGCGTTTTCAAGAAAGCGCCACAAAAAAACCAAAGCCCAACGACGCCGTTTTTCGAGCTT
13863930 TCGGGGAT
66 TCGGGGAT
*
13863938 TTAGCGGCGTTTTCGAGAAAGCGCCACAAAAAAACCAAAGCCCAACGACGCCG-TTTTCTGAGCT
1 TTAGCGGCGTTTTCAAGAAAGCGCCACAAAAAAACCAAAGCCCAACGACGCCGTTTTTC-GAGCT
13864002 TTCGGGGAT
65 TTCGGGGAT
* * * *
13864011 TTAGTGGCGTTTTTAAGTAAGCGCCGCAAA
1 TTAGCGGCGTTTTCAAGAAAGCGCCACAAA
13864041 TGCTCAGGCT
Statistics
Matches: 91, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
71 9 0.10
72 20 0.22
73 62 0.68
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (73 bp):
TTAGCGGCGTTTTCAAGAAAGCGCCACAAAAAAACCAAAGCCCAACGACGCCGTTTTTCGAGCTT
TCGGGGAT
Found at i:13864252 original size:114 final size:113
Alignment explanation
Indices: 13863937--13864376 Score: 505
Period size: 113 Copynumber: 3.9 Consensus size: 113
13863927 CTTTCGGGGA
*
13863937 TTTAGCGGCGTTTTCGAGAAAGCGCCACAAAAAAACCAAAGCCCAACGACGCCGTTTTCTGAGCT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCACAAAAAAACCAAAGCCCAACGACGCCGTTTTCTGAGCT
*
13864002 TTCGGGGATTTAGTGGCGTTTTTAAGTAAGCGCCGCAAATGCTCA-GGC
66 TTCGGGGATTTAGTGGCGTTTTTAAG-AAGCGCCGCTAATGCTCAGGGC
* *
13864050 TTTAGCAGCGTTTTTGAGAAAGCGCCACAAAAAAACCAAAGCCCAACGATGCCGTTTTCTGAGCT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCACAAAAAAACCAAAGCCCAACGACGCCGTTTTCTGAGCT
*
13864115 TTCGGGGATTTAGTGGCGTTTTTACGCAAGCGCCGCTAATGCTCAGGGC
66 TTCGGGGATTTAGTGGCGTTTTTAAG-AAGCGCCGCTAATGCTCAGGGC
* * * * * **
13864164 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAACAAAAA-CTAAGCCCAGCTACACTATTTTCTGA-C
1 TTTAGCGGCGTTTTTGAGAAAGCGCCACAA-AAAAACCAAAGCCCAACGACGCCGTTTTCTGAGC
* * * *
13864227 AATTCGTGGACTTTAGCGGCG-TTTTAAGAATGCGCCGCTAATGCTTAGGGC
65 -TTTCGGGGA-TTTAGTGGCGTTTTTAAGAA-GCGCCGCTAATGCTCAGGGC
* * * * * * * * *
13864278 TTTAGCGGCGTTTTTGTTG-AAGCGTCGC-AAAAAACCTAAGCCCAATGGCGTCGTTTTCTAAAC
1 TTTAGCGGCGTTTTTG-AGAAAGCGCCACAAAAAAACCAAAGCCCAACGACGCCGTTTTCTGAGC
** * * *
13864341 TTTTAGGGCTTTAGCGGCGTTTTTAAAAAGCGCCGC
65 TTTCGGGGATTTAGTGGCGTTTTTAAGAAGCGCCGC
13864377 AAAACCTTTT
Statistics
Matches: 281, Mismatches: 37, Indels: 19
0.83 0.11 0.06
Matches are distributed among these distances:
112 22 0.08
113 137 0.49
114 107 0.38
115 15 0.05
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (113 bp):
TTTAGCGGCGTTTTTGAGAAAGCGCCACAAAAAAACCAAAGCCCAACGACGCCGTTTTCTGAGCT
TTCGGGGATTTAGTGGCGTTTTTAAGAAGCGCCGCTAATGCTCAGGGC
Found at i:13864335 original size:227 final size:227
Alignment explanation
Indices: 13863937--13864365 Score: 510
Period size: 227 Copynumber: 1.9 Consensus size: 227
13863927 CTTTCGGGGA
* * *
13863937 TTTAGCGGCGTTTTCGAGAAAGCGCCACAAAAAAACCAAAGCCCAACGACGCCGTTTTCTGAGCT
1 TTTAGCGGCGTTTTCGAGAAAGCGCCACAAAAAAACCAAAGCCCAACGACACCATTTTCTGAGCA
*
13864002 TTCGGGGATTTAGTGGCGTTTTTAAGTAAGCGCCGCAAATGCTCAGGCTTTAGCAGCGTTTTTGA
66 TTCGGGGATTTAGCGGCGTTTTTAAGTAAGCGCCGCAAATGCTCAGGCTTTAGCAGCGTTTTTGA
* * * * *
13864067 GAAAGCGCCACAAAAAAACCAAAGCCCAACGATGCCGTTTTCTGAGCTTTCGGGGATTTAGTGGC
131 GAAAGCGCCACAAAAAAACCAAAGCCCAACGACGCCGTTTTCTAAACTTTCAGGGATTTAGCGGC
13864132 GTTTTTACGCAAGCGCCGCTAATGCTCAGGGC
196 GTTTTTACGCAAGCGCCGCTAATGCTCAGGGC
* * * * * *
13864164 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAACAAAAA-CTAAGCCCAGCTACACTATTTTCTGA-C
1 TTTAGCGGCGTTTTCGAGAAAGCGCCACAA-AAAAACCAAAGCCCAACGACACCATTTTCTGAGC
* * * *
13864227 AATTCGTGGACTTTAGCGGCG-TTTTAAG-AATGCGCCGCTAATGCTTAGGGCTTTAGCGGCGTT
65 -ATTCGGGGA-TTTAGCGGCGTTTTTAAGTAA-GCGCCGCAAATGCTCA-GGCTTTAGCAGCGTT
* * * * * * * * *
13864290 TTTGTTG-AAGCGTCGC-AAAAAACCTAAGCCCAATGGCGTCGTTTTCTAAACTTTTAGGGCTTT
126 TTTG-AGAAAGCGCCACAAAAAAACCAAAGCCCAACGACGCCGTTTTCTAAACTTTCAGGGATTT
13864353 AGCGGCGTTTTTA
190 AGCGGCGTTTTTA
13864366 AAAAGCGCCG
Statistics
Matches: 168, Mismatches: 28, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
226 3 0.02
227 125 0.74
228 39 0.23
229 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (227 bp):
TTTAGCGGCGTTTTCGAGAAAGCGCCACAAAAAAACCAAAGCCCAACGACACCATTTTCTGAGCA
TTCGGGGATTTAGCGGCGTTTTTAAGTAAGCGCCGCAAATGCTCAGGCTTTAGCAGCGTTTTTGA
GAAAGCGCCACAAAAAAACCAAAGCCCAACGACGCCGTTTTCTAAACTTTCAGGGATTTAGCGGC
GTTTTTACGCAAGCGCCGCTAATGCTCAGGGC
Found at i:13864895 original size:81 final size:81
Alignment explanation
Indices: 13864806--13864962 Score: 210
Period size: 81 Copynumber: 1.9 Consensus size: 81
13864796 TTCGGTGTTA
* * *
13864806 GGTTAGGATTTAGGATTTAGATTAATTAGTGTGTTTT-ATTT-TTTATGAAATAAGGTTTAAGGG
1 GGTTAGGATTTAGGATTTAGATTAATTAATAT-TTTTAATTTGTATATGAAATAAGGTTT-AGGG
*
13864869 TTAGGGGTTAGGGATTCG
64 TTAGGAGTTAGGGATTCG
* * *
13864887 GGTTAGGATTTAGGGTTTTGATTAATTAATATTTTTAATTTGTATATTAAATAAGGTTTAGGGTT
1 GGTTAGGATTTAGGATTTAGATTAATTAATATTTTTAATTTGTATATGAAATAAGGTTTAGGGTT
*
13864952 AGTAGTTAGGG
66 AGGAGTTAGGG
13864963 GTTAGTGGTT
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
80 4 0.06
81 47 0.71
82 15 0.23
ACGTcount: A:0.27, C:0.01, G:0.27, T:0.45
Consensus pattern (81 bp):
GGTTAGGATTTAGGATTTAGATTAATTAATATTTTTAATTTGTATATGAAATAAGGTTTAGGGTT
AGGAGTTAGGGATTCG
Found at i:13864966 original size:14 final size:14
Alignment explanation
Indices: 13864947--13864980 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
13864937 ATAAGGTTTA
13864947 GGGTTAGTAGTTAG
1 GGGTTAGTAGTTAG
* *
13864961 GGGTTAGTGGTTTG
1 GGGTTAGTAGTTAG
13864975 GGGTTA
1 GGGTTA
13864981 AGTGTTAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.47, T:0.38
Consensus pattern (14 bp):
GGGTTAGTAGTTAG
Found at i:13864994 original size:28 final size:28
Alignment explanation
Indices: 13864941--13864994 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
13864931 TATTAAATAA
**
13864941 GGTTTAGGGTTAGTAGTTAGGGGTTAGT
1 GGTTTAGGGTTAGTAGTTAGAAGTTAGT
*
13864969 GGTTTGGGGTTAAGT-GTTAGAAGTTA
1 GGTTTAGGGTT-AGTAGTTAGAAGTTA
13864995 AGAGTTAGTG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
28 19 0.86
29 3 0.14
ACGTcount: A:0.20, C:0.00, G:0.41, T:0.39
Consensus pattern (28 bp):
GGTTTAGGGTTAGTAGTTAGAAGTTAGT
Found at i:13866369 original size:21 final size:21
Alignment explanation
Indices: 13866345--13866392 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
13866335 CTACAACTTA
13866345 AAGCAGAGGCGGCAACGAGAG
1 AAGCAGAGGCGGCAACGAGAG
* * *
13866366 AAGCAGAGGCTGTAGCGAGAG
1 AAGCAGAGGCGGCAACGAGAG
13866387 AAGCAG
1 AAGCAG
13866393 TGAGAGAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.38, C:0.17, G:0.42, T:0.04
Consensus pattern (21 bp):
AAGCAGAGGCGGCAACGAGAG
Found at i:13866896 original size:42 final size:42
Alignment explanation
Indices: 13866775--13867063 Score: 251
Period size: 42 Copynumber: 6.8 Consensus size: 42
13866765 AATCCCAAAA
* ** *
13866775 TTAGTGGCGTTTTTTATAAAAGCGCTGCTAAAGAACATTA-CTT
1 TTAGCGGCGTTTTTT-TTTAAGCGCTGCTAAAGAACATGATC-T
* * ** ** *
13866818 TTCGCGGCGTTCGTGATGAAAGCGCCGCTAAAGAACATGATCT
1 TTAGCGGCGTT-TTTTTTTAAGCGCTGCTAAAGAACATGATCT
* * *
13866861 TTCGCGCCGTTTTTCTTTAAGCGCTGCTAAAGAACATGATCT
1 TTAGCGGCGTTTTTTTTTAAGCGCTGCTAAAGAACATGATCT
* ** *
13866903 TTAGCGGCGATTTTTTGAAACCG-TCGCTAAAGAACATGATCT
1 TTAGCGGCGTTTTTTTTTAAGCGCT-GCTAAAGAACATGATCT
* * *
13866945 TTAGCGGCGTCTTTTTTTTAAGCGTTGCTAAAGACCATGTTCT
1 TTAGCGGCGT-TTTTTTTTAAGCGCTGCTAAAGAACATGATCT
* * *
13866988 TTAGC-GCGTCTTTTTTTTAAACGCCGTTAAAGAACATGATCT
1 TTAGCGGCGT-TTTTTTTTAAGCGCTGCTAAAGAACATGATCT
* *
13867030 TTAGCGGCGTTTTTTTCTGTAAACGCTGCAAAAG
1 TTAGCGGCGTTTTTTT-T-TAAGCGCTGCTAAAG
13867064 TTAGCGACGT
Statistics
Matches: 201, Mismatches: 37, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
41 1 0.00
42 109 0.54
43 76 0.38
44 15 0.07
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (42 bp):
TTAGCGGCGTTTTTTTTTAAGCGCTGCTAAAGAACATGATCT
Found at i:13866965 original size:85 final size:82
Alignment explanation
Indices: 13866775--13867063 Score: 292
Period size: 85 Copynumber: 3.4 Consensus size: 82
13866765 AATCCCAAAA
* ** * * **
13866775 TTAGTGGCGTTTTTTATAAAAGCGCTGCTAAAGAACATTA-CTTTTCGCGGCGTTCGTGATGAAA
1 TTAGCGGCGTTTTTT-TTTAAGCGCTGCTAAAGAACATGATC-TTTAGCGGCGTT--TTTTGAAA
13866839 GCGCCGCTAAAGAACATGATCT
62 -CGCCGCTAAAGAACATGATCT
* * *
13866861 TTCGCGCCGTTTTTCTTTAAGCGCTGCTAAAGAACATGATCTTTAGCGGCGATTTTTTGAAACCG
1 TTAGCGGCGTTTTTTTTTAAGCGCTGCTAAAGAACATGATCTTTAGCGGCG-TTTTTTGAAA-CG
*
13866926 TCGCTAAAGAACATGATCT
64 CCGCTAAAGAACATGATCT
* * * * *
13866945 TTAGCGGCGTCTTTTTTTTAAGCGTTGCTAAAGACCATGTTCTTTAGCGCGTCTTTTTTTTAAAC
1 TTAGCGGCGT-TTTTTTTTAAGCGCTGCTAAAGAACATGATCTTTAGCG-G-CGTTTTTTGAAAC
*
13867010 GCCGTTAAAGAACATGATCT
63 GCCGCTAAAGAACATGATCT
* *
13867030 TTAGCGGCGTTTTTTTCTGTAAACGCTGCAAAAG
1 TTAGCGGCGTTTTTTT-T-TAAGCGCTGCTAAAG
13867064 TTAGCGACGT
Statistics
Matches: 171, Mismatches: 25, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
84 40 0.23
85 94 0.55
86 36 0.21
87 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (82 bp):
TTAGCGGCGTTTTTTTTTAAGCGCTGCTAAAGAACATGATCTTTAGCGGCGTTTTTTGAAACGCC
GCTAAAGAACATGATCT
Found at i:13870703 original size:16 final size:16
Alignment explanation
Indices: 13870682--13870712 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
13870672 CATATTAGAG
13870682 CACATAAATTTGAAAC
1 CACATAAATTTGAAAC
*
13870698 CACATATATTTGAAA
1 CACATAAATTTGAAA
13870713 AAAACTTCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.16, G:0.06, T:0.29
Consensus pattern (16 bp):
CACATAAATTTGAAAC
Found at i:13870910 original size:19 final size:19
Alignment explanation
Indices: 13870875--13870929 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
13870865 TTATTTAAAA
*
13870875 TATAAAT-TTTGGAATTTT
1 TATAAATATTTTGAATTTT
13870893 TATAAATATTTTGAATTTT
1 TATAAATATTTTGAATTTT
*
13870912 GA-AAATTATTTTGTAATT
1 TATAAA-TATTTTG-AATT
13870930 ATTTTGTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 10 0.31
19 18 0.56
20 4 0.12
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:13870945 original size:9 final size:11
Alignment explanation
Indices: 13870915--13870940 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
13870905 GAATTTTGAA
13870915 AATTATTTTGT
1 AATTATTTTGT
13870926 AATTATTTTGT
1 AATTATTTTGT
13870937 AATT
1 AATT
13870941 TTTGTTGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (11 bp):
AATTATTTTGT
Found at i:13878727 original size:13 final size:13
Alignment explanation
Indices: 13878711--13878748 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
13878701 TTCATTGAAA
13878711 AAAAAAGAAAAAG
1 AAAAAAGAAAAAG
13878724 AAAAAA-AAGAAAG
1 AAAAAAGAA-AAAG
13878737 AAAAAAGAAAAA
1 AAAAAAGAAAAA
13878749 AGAGAGGCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 2 0.09
13 19 0.83
14 2 0.09
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (13 bp):
AAAAAAGAAAAAG
Found at i:13878728 original size:7 final size:7
Alignment explanation
Indices: 13878711--13878751 Score: 59
Period size: 7 Copynumber: 6.1 Consensus size: 7
13878701 TTCATTGAAA
13878711 AAAAAAG
1 AAAAAAG
13878718 -AAAAAG
1 AAAAAAG
13878724 AAAAAA-
1 AAAAAAG
*
13878730 AAGAAAG
1 AAAAAAG
13878737 AAAAAAG
1 AAAAAAG
13878744 AAAAAAG
1 AAAAAAG
13878751 A
1 A
13878752 GAGGCCAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
6 11 0.37
7 19 0.63
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:13878736 original size:19 final size:19
Alignment explanation
Indices: 13878708--13878749 Score: 68
Period size: 20 Copynumber: 2.2 Consensus size: 19
13878698 TACTTCATTG
13878708 AAAAAAAAAG-AAAAAGAA
1 AAAAAAAAAGAAAAAAGAA
13878726 AAAAAAGAAAGAAAAAAGAA
1 AAAAAA-AAAGAAAAAAGAA
13878746 AAAA
1 AAAA
13878750 GAGAGGCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 6 0.27
19 4 0.18
20 12 0.55
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (19 bp):
AAAAAAAAAGAAAAAAGAA
Found at i:13880179 original size:45 final size:44
Alignment explanation
Indices: 13880062--13880182 Score: 143
Period size: 44 Copynumber: 2.7 Consensus size: 44
13880052 ATTATGGCGG
* *
13880062 GTCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCA
1 GTCTTATCTTCCTAAAGTTGCAGTGGAGCAGACTGAAGACACCA
* * * * * *
13880106 GCCTTGTCTCCCTAAAGTTGCAGCGGAGCAGACTGAAGATAGCGA
1 GTCTTATCTTCCTAAAGTTGCAGTGGAGCAGACTGAAGACA-CCA
* *
13880151 TTCTTATCTTCCTGAAGTTGCAGTGGAGCAGA
1 GTCTTATCTTCCTAAAGTTGCAGTGGAGCAGA
13880183 TTAAAGCTAC
Statistics
Matches: 62, Mismatches: 14, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
44 34 0.55
45 28 0.45
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (44 bp):
GTCTTATCTTCCTAAAGTTGCAGTGGAGCAGACTGAAGACACCA
Found at i:13880539 original size:241 final size:240
Alignment explanation
Indices: 13880248--13880786 Score: 641
Period size: 241 Copynumber: 2.3 Consensus size: 240
13880238 TAAGCCACCA
* * * *
13880248 GCCTTATCTCCCTGAAGTTTCAGCAGAGTAGACTGAAGACAACGAATCTTATTTCCCTGGTGTTG
1 GCCTTATCTCCCTGAAGTTGCAGCAGAGCAGACTGAAGACAACGAATCTTATTTCCCTAGCGTTG
* * *
13880313 TAGTGGAACAGGTTAAAACTAAAAATTAGTG-CGGATCTTATCTTCCTAAAGTTGCAGTGGAGTA
66 CAGTGGAACAGATTAAAACTAAAAATTA-TGACGGATCTTATCTTCCTAAAGTTGCA-TGGAGCA
* * *
13880377 GATTAAAACCACTAGCCTTATCTCCCTGAAGTTACAGCAGAGCAGACTGAAGACAACGAATCTTA
129 GATTAAAACCACCAGCCTTATCTCCCTGAAGTTACAGCAGAACAGACTAAAGACAACGAATCTTA
**
13880442 T-TTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTACAAACTATGACG
194 TCTT-CCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAACTATGACG
* *
13880489 GCCTTATCTCCCTGAAGTTGCAGCTGAGCAGATTGAAGACAACGAATCTTATTTCCCTAGCGTTG
1 GCCTTATCTCCCTGAAGTTGCAGCAGAGCAGACTGAAGACAACGAATCTTATTTCCCTAGCGTTG
* * * *
13880554 CAGTGGAACAGATTAAAGCTACAAATTATGACTGATCTTATCTTCCTGAAGTTGCATGGAGCAGA
66 CAGTGGAACAGATTAAAACTAAAAATTATGACGGATCTTATCTTCCTAAAGTTGCATGGAGCAGA
* * * * * ** * *
13880619 TTGAAGCCACCAGTCTTATTTCCCTGAAGTTGCAGTGGAACAGACTAAAGACAGCGGATCTTATC
131 TTAAAACCACCAGCCTTATCTCCCTGAAGTTACAGCAGAACAGACTAAAGACAACGAATCTTATC
** *
13880684 TTCCTGAAGTTGCAGTGGAGGAGATTGAAGCTAC---C----A--
196 TTCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAACTATGACG
* ** * ** *
13880720 GCCTTATCTCCCTGAAGTTACAGTGGAGTAGACTGAAGACAGTGAATCTTATTTCCATAGCGTTG
1 GCCTTATCTCCCTGAAGTTGCAGCAGAGCAGACTGAAGACAACGAATCTTATTTCCCTAGCGTTG
13880785 CA
66 CA
13880787 ATGTGTTGGA
Statistics
Matches: 258, Mismatches: 38, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
231 59 0.23
233 1 0.00
237 1 0.00
240 89 0.34
241 108 0.42
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (240 bp):
GCCTTATCTCCCTGAAGTTGCAGCAGAGCAGACTGAAGACAACGAATCTTATTTCCCTAGCGTTG
CAGTGGAACAGATTAAAACTAAAAATTATGACGGATCTTATCTTCCTAAAGTTGCATGGAGCAGA
TTAAAACCACCAGCCTTATCTCCCTGAAGTTACAGCAGAACAGACTAAAGACAACGAATCTTATC
TTCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAACTATGACG
Found at i:13880546 original size:143 final size:143
Alignment explanation
Indices: 13879632--13880526 Score: 1169
Period size: 143 Copynumber: 6.3 Consensus size: 143
13879622 CATTATGATA
* * **
13879632 GATCTTATCTTCTTGAAGTTGCAGTGGAGCAGATTGAAGCCGTCAGCCTTATCTCCCTGAAGTTG
1 GATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTG
* * * *
13879697 CAGCGAAGCAGACTGAAGACAGCAAATATTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCT
66 CAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGACGTTGCAGTGGAACAGATTAAAGCT
*
13879762 ACAAATTATGACG
131 ACAAATTATGGCG
* *
13879775 GATCTTATCTTCCTAAAGTTGTAGTGGAGCAGATTGAAGCCACCAGCCTTATCCCCCTGAAGTTG
1 GATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTG
* * * *
13879840 CAACGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGACATTGCAGTGGAAAAGATTAAAGCT
66 CAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGACGTTGCAGTGGAACAGATTAAAGCT
13879905 ACAAATTATGGCG
131 ACAAATTATGGCG
* * *
13879918 GATCTTATCTTCCTAAAGTTGCAGTGGAGTAGATTGAAGCCACCAGCCTTGTCTCCCTGAAGTTT
1 GATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTG
* * * *
13879983 CAGCGGAGCCGACTGAAGACAGCGAATCTTATCTT-CCTAAAGTTGCAGTAAAGAA-A-ATTAAA
66 CAGCGGAGCAGACTGAAGACAGCGAATCTTAT-TTCCCTGACGTTGCAGT--GGAACAGATTAAA
*
13880045 GTTACAAATTATGGCG
128 GCTACAAATTATGGCG
* * *
13880061 GGTCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTGTCTCCCTAAAGTTG
1 GATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTG
* * * *
13880126 CAGCGGAGCAGACTGAAGATAGCGATTCTTATCTT-CCTGAAGTTGCAGTGGAGCAGATTAAAGC
66 CAGCGGAGCAGACTGAAGACAGCGAATCTTAT-TTCCCTGACGTTGCAGTGGAACAGATTAAAGC
13880190 TACAAATTATGGC-
130 TACAAATTATGGCG
* *
13880203 GAGTCTTATCTTCCTGAAGTTGCAGTGGAGCTGATT-AAGCCACCAGCCTTATCTCCCTGAAGTT
1 GA-TCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTT
* * * * ** * * *
13880267 TCAGCAGAGTAGACTGAAGACAACGAATCTTATTTCCCTGGTGTTGTAGTGGAACAGGTTAAAAC
65 GCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGACGTTGCAGTGGAACAGATTAAAGC
*
13880332 TAAAAATTA-GTGCG
130 TACAAATTATG-GCG
* * * * *
13880346 GATCTTATCTTCCTAAAGTTGCAGTGGAGTAGATTAAAACCACTAGCCTTATCTCCCTGAAGTTA
1 GATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTG
* * *
13880411 CAGCAGAGCAGACTGAAGACAACGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCT
66 CAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGACGTTGCAGTGGAACAGATTAAAGCT
* *
13880476 ACAAACTATGACG
131 ACAAATTATGGCG
* * *
13880489 G-CCTTATCTCCCTGAAGTTGCAGCT-GAGCAGATTGAAG
1 GATCTTATCTTCCTAAAGTTGCAG-TGGAGCAGATTGAAG
13880527 ACAACGAATC
Statistics
Matches: 663, Mismatches: 77, Indels: 25
0.87 0.10 0.03
Matches are distributed among these distances:
141 5 0.01
142 147 0.22
143 504 0.76
144 4 0.01
145 3 0.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (143 bp):
GATCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTG
CAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGACGTTGCAGTGGAACAGATTAAAGCT
ACAAATTATGGCG
Found at i:13880556 original size:428 final size:428
Alignment explanation
Indices: 13879647--13880565 Score: 1161
Period size: 428 Copynumber: 2.1 Consensus size: 428
13879637 TATCTTCTTG
*** * * *
13879647 AAGTTGCAGTGGAGCAGATTGAAGCCGTCAGCCTTATCTCCCTGAAGTTGCAGCGAAGCAGACTG
1 AAGTTGCAGTGGAGCAGATTGAAGCAACCAACCTTATCTCCCTAAAGTTGCAGCGGAGCAGACTG
**
13879712 AAGACAGCAAATATTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTACAAATTATGACGGA
66 AAGACAGCAAATATTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAATTATGACGGA
*
13879777 TCTTATCTTCCTAAAGTTGTAGTGGAGCAGATTGAAGCCACCAGCCTTATCCCCCTGAAGTTGCA
131 TCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCCCCCTGAAGTTGCA
* * * * *
13879842 ACGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGACATTGCAGTGGAAAAGATTAAAGCTAC
196 ACAGAGCAGACTGAAGACAACGAATCTTATTTCCCTGACATTGCAGTGGAAAAGATTAAAACTAA
* * *
13879907 AAATTATGGCGGATCTTATCTTCCTAAAGTTGCAGTGGAGTAGATTGAAGCCACCAGCCTTGTCT
261 AAATTATGGCGGATCTTATCTTCCTAAAGTTGCAGTGGAGTAGATTAAAACCACCAGCCTTATCT
* * * *
13879972 CCCTGAAGTTTCAGCGGAGCCGACTGAAGACAGCGAATCTTATCTTCCTAAAGTTGCAGTAAAGA
326 CCCTGAAGTTACAGCAGAGCAGACTGAAGACAACGAATCTTATCTTCCTAAAGTTGCAGT-AAGA
* * * * *
13880037 AAATTAAAGTTACAAATTATGGCGGGTCTTATCTTCCTA
390 AAATTAAAGCTACAAACTATGACGGGCCTTATCTCCCTA
* * *
13880076 AAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTGTCTCCCTAAAGTTGCAGCGGAGCAGACTG
1 AAGTTGCAGTGGAGCAGATTGAAGCAACCAACCTTATCTCCCTAAAGTTGCAGCGGAGCAGACTG
* * * * * *
13880141 AAGATAGCGATTCTTATCTT-CCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAATTATGGC-G
66 AAGACAGCAAATATTAT-TTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAATTATGACGG
* * * *
13880204 AGTCTTATCTTCCTGAAGTTGCAGTGGAGCTGATT-AAGCCACCAGCCTTATCTCCCTGAAGTTT
130 A-TCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCCCCCTGAAGTTG
* * *** * * *
13880268 CAGCAGAGTAGACTGAAGACAACGAATCTTATTTCCCTGGTGTTGTAGTGGAACAGGTTAAAACT
194 CAACAGAGCAGACTGAAGACAACGAATCTTATTTCCCTGACATTGCAGTGGAAAAGATTAAAACT
*
13880333 AAAAATTA-GTGCGGATCTTATCTTCCTAAAGTTGCAGTGGAGTAGATTAAAACCACTAGCCTTA
259 AAAAATTATG-GCGGATCTTATCTTCCTAAAGTTGCAGTGGAGTAGATTAAAACCACCAGCCTTA
***
13880397 TCTCCCTGAAGTTACAGCAGAGCAGACTGAAGACAACGAATCTTAT-TTCCCTGGCGTTGCAGT-
323 TCTCCCTGAAGTTACAGCAGAGCAGACTGAAGACAACGAATCTTATCTT-CCTAAAGTTGCAGTA
* *
13880460 GGAACAGATTAAAGCTACAAACTATGAC-GGCCTTATCTCCCTG
387 AGAA-A-ATTAAAGCTACAAACTATGACGGGCCTTATCTCCCTA
* * * ** * *
13880503 AAGTTGCAGCT-GAGCAGATTGAAGACAACGAATCTTATTTCCCTAGCGTTGCAGTGGAACAGA
1 AAGTTGCAG-TGGAGCAGATTGAAG-CAACCAACCTTATCTCCCTAAAGTTGCAGCGGAGCAGA
13880566 TTAAAGCTAC
Statistics
Matches: 423, Mismatches: 59, Indels: 17
0.85 0.12 0.03
Matches are distributed among these distances:
426 3 0.01
427 38 0.09
428 239 0.57
429 141 0.33
430 2 0.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (428 bp):
AAGTTGCAGTGGAGCAGATTGAAGCAACCAACCTTATCTCCCTAAAGTTGCAGCGGAGCAGACTG
AAGACAGCAAATATTATTTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAATTATGACGGA
TCTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCCCCCTGAAGTTGCA
ACAGAGCAGACTGAAGACAACGAATCTTATTTCCCTGACATTGCAGTGGAAAAGATTAAAACTAA
AAATTATGGCGGATCTTATCTTCCTAAAGTTGCAGTGGAGTAGATTAAAACCACCAGCCTTATCT
CCCTGAAGTTACAGCAGAGCAGACTGAAGACAACGAATCTTATCTTCCTAAAGTTGCAGTAAGAA
AATTAAAGCTACAAACTATGACGGGCCTTATCTCCCTA
Found at i:13880560 original size:98 final size:98
Alignment explanation
Indices: 13880391--13880668 Score: 384
Period size: 98 Copynumber: 2.8 Consensus size: 98
13880381 AAAACCACTA
* * *
13880391 GCCTTATCTCCCTGAAGTTACAGCAGAGCAGACTGAAGACAACGAATCTTATTTCCCTGGCGTTG
1 GCCTTATCTCCCTGAAGTTGCAGCTGAGCAGATTGAAGACAACGAATCTTATTTCCCT-GCGTTG
13880456 CAGTGGAACAGATTAAAGCTACAAACTATGAC-G
65 CAGTGGAACAGATTAAAGCTACAAACTATGACTG
13880489 GCCTTATCTCCCTGAAGTTGCAGCTGAGCAGATTGAAGACAACGAATCTTATTTCCCTAGCGTTG
1 GCCTTATCTCCCTGAAGTTGCAGCTGAGCAGATTGAAGACAACGAATCTTATTTCCCT-GCGTTG
*
13880554 CAGTGGAACAGATTAAAGCTACAAATTATGACTG
65 CAGTGGAACAGATTAAAGCTACAAACTATGACTG
** * * * * *
13880588 ATCTTATCTTCCTGAAGTTGCA--TGGAGCAGATTGAAG-CCACCAGTCTTATTTCCCTGAAGTT
1 GCCTTATCTCCCTGAAGTTGCAGCT-GAGCAGATTGAAGACAACGAATCTTATTTCCCTG-CGTT
*
13880650 GCAGTGGAACAGACTAAAG
64 GCAGTGGAACAGATTAAAG
13880669 ACAGCGGATC
Statistics
Matches: 164, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
96 1 0.01
97 38 0.23
98 105 0.64
99 20 0.12
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (98 bp):
GCCTTATCTCCCTGAAGTTGCAGCTGAGCAGATTGAAGACAACGAATCTTATTTCCCTGCGTTGC
AGTGGAACAGATTAAAGCTACAAACTATGACTG
Found at i:13880684 original size:428 final size:420
Alignment explanation
Indices: 13879647--13880697 Score: 1003
Period size: 428 Copynumber: 2.4 Consensus size: 420
13879637 TATCTTCTTG
*** * *
13879647 AAGTTGCAGTGGAGCAGATTGAAGCCGTCAGCCTTATCTCCCTGAAGTTGCAGC-GAAGCAGACT
1 AAGTTGCAGTGGAGCAGATTGAAGCAACCAACCTTATCTCCCTAAAGTTGCAGCGGAA-CAGACT
* * * * * ** * * *
13879711 GAAGACAGCAAATATTAT-TTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTACAAATTATGACG
65 GAAAATAGCGATTCTTATCTT-CCTGAAGTTGCAGTGGAGCAGATTAAAGC-AC--A--A-GCCA
* * * * * *
13879775 GATCTTATCTTCCTAAAGTTGTAGTGGAGCAGATTGAAGCCACCAGCCTTATCCCCCTGAAGTTG
123 G-TCTTATCTTCCTGAAGTTGCAGTGGAACAGA-TAAAGACACCAGCCTTATCTCCCTGAAGTTG
* * * *
13879840 CAACGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGACATTGCAGTGGAAAAGATTAAAGCT
186 CAACAGAGCAGACTGAAGACAACGAATCTTATTTCCCTGACATTGCAGTGGAAAAGATTAAAACT
* * * *
13879905 ACAAATTATGGCGGATCTTATCTTCCTAAAGTTGCAGTGGAGTAGATTGAAGCCACCAGCCTTGT
251 AAAAATTATGGCGGATCTTATCTTCCTAAAGTTGCAGTGGAGTAGATTAAAACCACCAGCCTTAT
* * * *
13879970 CTCCCTGAAGTTTCAGCGGAGCCGACTGAAGACAGCGAATCTTATCTTCCTAAAGTTGCAGTAAA
316 CTCCCTGAAGTTACAGCAGAGCAGACTGAAGACAACGAATCTTATCTTCCTAAAGTTGCAGT-AA
* * * * *
13880035 GAAAATTAAAGTTACAAATTATGGCGGGTCTTATCTTCCTA
380 GAAAATTAAAGCTACAAACTATGACGGGCCTTATCTCCCTA
* * * *
13880076 AAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTGTCTCCCTAAAGTTGCAGCGGAGCAGACTG
1 AAGTTGCAGTGGAGCAGATTGAAGCAACCAACCTTATCTCCCTAAAGTTGCAGCGGAACAGACTG
* *
13880141 AAGATAGCGATTCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAATTATGGCGAG
66 AAAATAGCGATTCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTAAAGC-AC--A--A--GCCAG
* * * * * *
13880206 TCTTATCTTCCTGAAGTTGCAGTGGAGCTGATTAAGCCACCAGCCTTATCTCCCTGAAGTTTCAG
124 TCTTATCTTCCTGAAGTTGCAGTGGAACAGATAAAGACACCAGCCTTATCTCCCTGAAGTTGCAA
* *** * * *
13880271 CAGAGTAGACTGAAGACAACGAATCTTATTTCCCTGGTGTTGTAGTGGAACAGGTTAAAACTAAA
189 CAGAGCAGACTGAAGACAACGAATCTTATTTCCCTGACATTGCAGTGGAAAAGATTAAAACTAAA
*
13880336 AATTA-GTGCGGATCTTATCTTCCTAAAGTTGCAGTGGAGTAGATTAAAACCACTAGCCTTATCT
254 AATTATG-GCGGATCTTATCTTCCTAAAGTTGCAGTGGAGTAGATTAAAACCACCAGCCTTATCT
*** *
13880400 CCCTGAAGTTACAGCAGAGCAGACTGAAGACAACGAATCTTAT-TTCCCTGGCGTTGCAGT-GGA
318 CCCTGAAGTTACAGCAGAGCAGACTGAAGACAACGAATCTTATCTT-CCTAAAGTTGCAGTAAGA
*
13880463 ACAGATTAAAGCTACAAACTATGAC-GGCCTTATCTCCCTG
382 A-A-ATTAAAGCTACAAACTATGACGGGCCTTATCTCCCTA
* * * ** * *
13880503 AAGTTGCAGCT-GAGCAGATTGAAGACAACGAATCTTATTTCCCTAGCGTTGCAGTGGAACAGAT
1 AAGTTGCAG-TGGAGCAGATTGAAG-CAACCAACCTTATCTCCCTAAAGTTGCAGCGGAACAGAC
*
13880567 TAAAGCTACAAATTATGACTGA-TCTTATCTTCCTGAAGTTGCA-TGGAGCAGATTGAAGC-C-A
64 T---G--A-AAA-TA-G-C-GATTCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTAAAGCACAA
* * * *
13880628 -CCAGTCTTAT-TTCCCTGAAGTTGCAGTGGAACAGACTAAAGACAGCGGATCTTATCTTCCTGA
119 GCCAGTCTTATCTT-CCTGAAGTTGCAGTGGAACAGA-TAAAGACACCAG-CCTTATCTCCCTGA
13880691 AGTTGCA
181 AGTTGCA
13880698 GTGGAGGAGA
Statistics
Matches: 524, Mismatches: 76, Indels: 45
0.81 0.12 0.07
Matches are distributed among these distances:
425 2 0.00
426 32 0.06
427 46 0.09
428 257 0.49
429 134 0.26
430 6 0.01
431 1 0.00
433 1 0.00
434 3 0.01
435 2 0.00
436 16 0.03
437 22 0.04
438 2 0.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (420 bp):
AAGTTGCAGTGGAGCAGATTGAAGCAACCAACCTTATCTCCCTAAAGTTGCAGCGGAACAGACTG
AAAATAGCGATTCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTAAAGCACAAGCCAGTCTTATC
TTCCTGAAGTTGCAGTGGAACAGATAAAGACACCAGCCTTATCTCCCTGAAGTTGCAACAGAGCA
GACTGAAGACAACGAATCTTATTTCCCTGACATTGCAGTGGAAAAGATTAAAACTAAAAATTATG
GCGGATCTTATCTTCCTAAAGTTGCAGTGGAGTAGATTAAAACCACCAGCCTTATCTCCCTGAAG
TTACAGCAGAGCAGACTGAAGACAACGAATCTTATCTTCCTAAAGTTGCAGTAAGAAAATTAAAG
CTACAAACTATGACGGGCCTTATCTCCCTA
Found at i:13880737 original size:89 final size:88
Alignment explanation
Indices: 13880587--13880775 Score: 272
Period size: 89 Copynumber: 2.1 Consensus size: 88
13880577 AATTATGACT
* * *
13880587 GATCTTATCTTCCTGAAGTTGCATGGAGCAGATTGAAGCCACCAGTCTTATTTCCCTGAAGTTGC
1 GATCTTATCTTCCTGAAGTTGCATGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTAC
13880652 AGTGGAACAGACTAAAGACAGCG
66 AGTGGAACAGACTAAAGACAGCG
* *
13880675 GATCTTATCTTCCTGAAGTTGCAGTGGAGGAGATTGAAGCTACCAGCCTTATCTCCCTGAAGTTA
1 GATCTTATCTTCCTGAAGTTGCA-TGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTA
** * *
13880740 CAGTGGAGTAGACTGAAGACAGTG
65 CAGTGGAACAGACTAAAGACAGCG
*
13880764 AATCTTAT-TTCC
1 GATCTTATCTTCC
13880776 ATAGCGTTGC
Statistics
Matches: 90, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
88 27 0.30
89 63 0.70
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (88 bp):
GATCTTATCTTCCTGAAGTTGCATGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTAC
AGTGGAACAGACTAAAGACAGCG
Found at i:13880744 original size:44 final size:43
Alignment explanation
Indices: 13880589--13880757 Score: 178
Period size: 44 Copynumber: 3.9 Consensus size: 43
13880579 TTATGACTGA
* *
13880589 TCTTATCTTCCTGAAGTTGCA-TGGAGCAGATTGAAGCCACCAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-CACCAG
* * * * *
13880632 TCTTATTTCCCTGAAGTTGCAGTGGAACAGACTAAAGACAGCGG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-CACCAG
* * *
13880676 ATCTTATCTTCCTGAAGTTGCAGTGGAGGAGATTGAAGCTACCAG
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGC-ACCAG
* * *
13880721 CCTTATCTCCCTGAAGTTACAGTGGAGTAGACTGAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
13880758 ACAGTGAATC
Statistics
Matches: 102, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
43 19 0.19
44 49 0.48
45 34 0.33
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (43 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGCACCAG
Found at i:13882409 original size:44 final size:44
Alignment explanation
Indices: 13882361--13882479 Score: 139
Period size: 45 Copynumber: 2.7 Consensus size: 44
13882351 TGGAGTAGAT
*
13882361 TGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCAGAGCAAAC
1 TGAAGCCACCAGCCTTATCTCCTTGAAGTTGCAGCAGAGCAAAC
* * ** * ** * *
13882405 TGAAGACAGCGAATCTTATCTTCTTGAAGTTGCAGTGGAGCAGAT
1 TGAAGCCA-CCAGCCTTATCTCCTTGAAGTTGCAGCAGAGCAAAC
13882450 TGAAGCCACCAGCCTTATCTCCTTGAAGTT
1 TGAAGCCACCAGCCTTATCTCCTTGAAGTT
13882480 TTAGTGGAGT
Statistics
Matches: 59, Mismatches: 15, Indels: 2
0.78 0.20 0.03
Matches are distributed among these distances:
44 25 0.42
45 34 0.58
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (44 bp):
TGAAGCCACCAGCCTTATCTCCTTGAAGTTGCAGCAGAGCAAAC
Found at i:13882486 original size:44 final size:44
Alignment explanation
Indices: 13882342--13882672 Score: 173
Period size: 44 Copynumber: 7.4 Consensus size: 44
13882332 TATCTTCCTA
* * *
13882342 AAGTTGTAGTGGAGTAGATTGAAGCCACCAGCCTTATCTCCCTG
1 AAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCTTG
** * * * * ** *
13882386 AAGTTGCAGCAGAGCAAACTGAAGACAGCGAATCTTATCTTCTTG
1 AAGTTGCAGTGGAGCAGATTGAAGCCA-CCAGCCTTATCTCCTTG
13882431 AAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCTTG
1 AAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCTTG
** * ** * * ** *
13882475 AAGTTTTAGTGGAGTAGATCAAAGCTACAAATCTCT-TCTCCCTG
1 AAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCT-TATCTCCTTG
* * * * * *
13882519 AAATT--ATGTTGGAGCAGATCGAAGCCACAATCCTTATCTCCCTA
1 AAGTTGCA-G-TGGAGCAGATTGAAGCCACCAGCCTTATCTCCTTG
* ** *** * * * *
13882563 AAGTTGCAGTGGAGTAGGATAAAAATATACAAACCTTATCTCCCTA
1 AAGTTGCAGTGGAGCA-GAT-TGAAGCCACCAGCCTTATCTCCTTG
* *** **
13882609 AAGTTGCAGTGGAGCAGGTTGAAATTACCAATTCTTATCTCCTTG
1 AAGTTGCAGTGGAGCAGATTGAAGCCACC-AGCCTTATCTCCTTG
*
13882654 AAGTTGCAGTGGAGTAGAT
1 AAGTTGCAGTGGAGCAGAT
13882673 CGAATCTACA
Statistics
Matches: 218, Mismatches: 59, Indels: 19
0.74 0.20 0.06
Matches are distributed among these distances:
42 1 0.00
43 2 0.01
44 111 0.51
45 69 0.32
46 35 0.16
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (44 bp):
AAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCTTG
Found at i:13882559 original size:88 final size:86
Alignment explanation
Indices: 13882438--13882703 Score: 275
Period size: 88 Copynumber: 3.0 Consensus size: 86
13882428 TTGAAGTTGC
* * ** *
13882438 AGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCTTGAAGTTTTAGTGGAGTAGATCAAAGCTAC
1 AGTGGAGCAGATTGAAGCCACAATCCTTATCTCCTTGAAGTTGCAGTGGAGTAGATCAAATCTAC
13882503 AAATCTCTTCTCCCTGAAATT
66 AAATCTCTTCTCCCTGAAATT
* * * *
13882524 ATGTTGGAGCAGATCGAAGCCACAATCCTTATCTCCCTAAAGTTGCAGTGGAGTAGGATAAAAAT
1 A-G-TGGAGCAGATTGAAGCCACAATCCTTATCTCCTTGAAGTTGCAGTGGAGTA-GAT-CAAAT
* *
13882589 ATACAAACCT-TATCTCCCT-AAAGTT
62 CTACAAATCTCT-TCTCCCTGAAA-TT
* *** * *
13882614 GCAGTGGAGCAGGTTGAAATTACCAATTCTTATCTCCTTGAAGTTGCAGTGGAGTAGATCGAATC
1 --AGTGGAGCAGATTGAAGCCA-CAATCCTTATCTCCTTGAAGTTGCAGTGGAGTAGATCAAATC
*
13882679 TACAAGTCTCTTCTCCCTGAAATT
63 TACAAATCTCTTCTCCCTGAAATT
13882703 A
1 A
13882704 CATTTTAGTG
Statistics
Matches: 145, Mismatches: 24, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
86 1 0.01
87 2 0.01
88 44 0.30
89 26 0.18
90 40 0.28
91 31 0.21
92 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (86 bp):
AGTGGAGCAGATTGAAGCCACAATCCTTATCTCCTTGAAGTTGCAGTGGAGTAGATCAAATCTAC
AAATCTCTTCTCCCTGAAATT
Found at i:13882605 original size:46 final size:44
Alignment explanation
Indices: 13882545--13882670 Score: 162
Period size: 45 Copynumber: 2.8 Consensus size: 44
13882535 GATCGAAGCC
13882545 ACAATCCTTATCTCCCTAAAGTTGCAGTGGAGTAGGATAAAAATAT
1 ACAATCCTTATCTCCCTAAAGTTGCAGTGGAGTAGG-TAAAAAT-T
* * **
13882591 ACAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAATT
1 ACAATCCTTATCTCCCTAAAGTTGCAGTGGAGTAGGTAAAAATT
* * *
13882635 ACCAATTCTTATCTCCTTGAAGTTGCAGTGGAGTAG
1 A-CAATCCTTATCTCCCTAAAGTTGCAGTGGAGTAG
13882671 ATCGAATCTA
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
44 2 0.03
45 34 0.49
46 34 0.49
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (44 bp):
ACAATCCTTATCTCCCTAAAGTTGCAGTGGAGTAGGTAAAAATT
Found at i:13884193 original size:25 final size:26
Alignment explanation
Indices: 13884165--13884223 Score: 84
Period size: 25 Copynumber: 2.3 Consensus size: 26
13884155 TTTTATCATC
* *
13884165 ATTTATTTTAAGTTTTTTTA-ATATT
1 ATTTATTTTAAGCTGTTTTACATATT
*
13884190 ATTTGTTTTAAGCTGTTTTACATATT
1 ATTTATTTTAAGCTGTTTTACATATT
13884216 ATTTATTT
1 ATTTATTT
13884224 AAAAAAAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 17 0.59
26 12 0.41
ACGTcount: A:0.25, C:0.03, G:0.07, T:0.64
Consensus pattern (26 bp):
ATTTATTTTAAGCTGTTTTACATATT
Found at i:13884268 original size:21 final size:18
Alignment explanation
Indices: 13884256--13884291 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
13884246 TTGTAAACTA
*
13884256 TTATTTATATATTTCAAAT
1 TTATATATATATTT-AAAT
13884275 TTATATATATATTTAAA
1 TTATATATATATTTAAA
13884292 ACTGTTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 3 0.19
19 13 0.81
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (18 bp):
TTATATATATATTTAAAT
Found at i:13884302 original size:19 final size:17
Alignment explanation
Indices: 13884259--13884307 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 17
13884249 TAAACTATTA
*
13884259 TTTATATATTTCAAATT
1 TTTATATATTTAAAATT
13884276 TATATATATATTTAAAACTGT
1 T-T-TATATATTTAAAA-T-T
13884297 TTTATATATTT
1 TTTATATATTT
13884308 TTTAGATTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 1 0.04
18 1 0.04
19 21 0.78
20 2 0.07
21 2 0.07
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.57
Consensus pattern (17 bp):
TTTATATATTTAAAATT
Found at i:13884437 original size:17 final size:17
Alignment explanation
Indices: 13884415--13884448 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
13884405 CTTATAAATC
13884415 ATTTACTTTAAAGTATT
1 ATTTACTTTAAAGTATT
*
13884432 ATTTACTTTAAATTATT
1 ATTTACTTTAAAGTATT
13884449 TTATATATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.56
Consensus pattern (17 bp):
ATTTACTTTAAAGTATT
Found at i:13889521 original size:22 final size:22
Alignment explanation
Indices: 13889493--13889536 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
13889483 TGTCCCATGT
*
13889493 CGTTATCAATTAATTAAAAGGG
1 CGTTATCAATTAATGAAAAGGG
13889515 CGTTATCAATTAATGAAAAGGG
1 CGTTATCAATTAATGAAAAGGG
13889537 GAACAACCGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (22 bp):
CGTTATCAATTAATGAAAAGGG
Found at i:13897931 original size:18 final size:19
Alignment explanation
Indices: 13897908--13897943 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
13897898 AAACACTAAA
13897908 TAAAAT-AAAAAATTGAAG
1 TAAAATGAAAAAATTGAAG
*
13897926 TAAAATGCAAAAATTGAA
1 TAAAATGAAAAAATTGAA
13897944 AAATAAACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.64, C:0.03, G:0.11, T:0.22
Consensus pattern (19 bp):
TAAAATGAAAAAATTGAAG
Found at i:13908500 original size:18 final size:20
Alignment explanation
Indices: 13908477--13908515 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
13908467 GGCCCATTAC
13908477 AGTAACA-ATAAT-CAGTAT
1 AGTAACAGATAATACAGTAT
*
13908495 AGTAACAGATTATACAGTAT
1 AGTAACAGATAATACAGTAT
13908515 A
1 A
13908516 CAGGTCCTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 4 0.22
20 7 0.39
ACGTcount: A:0.49, C:0.10, G:0.13, T:0.28
Consensus pattern (20 bp):
AGTAACAGATAATACAGTAT
Found at i:13913184 original size:233 final size:233
Alignment explanation
Indices: 13912771--13913245 Score: 853
Period size: 233 Copynumber: 2.0 Consensus size: 233
13912761 TGTGCGAACC
13912771 AAAACGCCTCAGCTTCGTGTTTAATTTCTGTCCCAGTCAATGTCGCGACACAACAAGACCTGTGT
1 AAAACGCCTCAGCTTCGTGTTTAATTTCTGTCCCAGTCAATGTCGCGACACAACAAGACCTGTGT
*
13912836 CACGACAGAGGTGACAGTGTACTCCTCCTTGAGACATCTTCAGCGGTATCTCATGACACCCTCAG
66 CACGACAGAGGTGACAGTGTACTCCTCCTTAAGACATCTTCAGCGGTATCTCATGACACCCTCAG
*
13912901 TCTATGTTGTGACATCGAAGGCAGTTTCGTACTTTCTCCATTACGTTCTCTATGTTGTGACATCG
131 TCTATGTTGTGACATCGAAGGCAGTTTCGTACTTTCTCCACTACGTTCTCTATGTTGTGACATCG
*
13912966 GGCCTCTCGTGTTGCTACATAGCATCCAATATCAGTCT
196 GGCCTCCCGTGTTGCTACATAGCATCCAATATCAGTCT
13913004 AAAACGCCTCAGCTTCGTGTTTAATTTCTGTCCCAGTCAATGTCGCGACACAACAAGACCTGTGT
1 AAAACGCCTCAGCTTCGTGTTTAATTTCTGTCCCAGTCAATGTCGCGACACAACAAGACCTGTGT
** *
13913069 TGCGACAGAGGTGACAGTGTACTCCTCCTTAAGACATCTTCAAG-GGTATCTCGTGACACCCTCA
66 CACGACAGAGGTGACAGTGTACTCCTCCTTAAGACATCTTC-AGCGGTATCTCATGACACCCTCA
*
13913133 GTCTATGTTGTGACATCGAAGGCAGTTTCGTACTTTCTCCACTATGTTCTCTATGTTGTGACATC
130 GTCTATGTTGTGACATCGAAGGCAGTTTCGTACTTTCTCCACTACGTTCTCTATGTTGTGACATC
*
13913198 GGGCCTCCCGTGTTGCTACATAGCATCCAATATCGGTCT
195 GGGCCTCCCGTGTTGCTACATAGCATCCAATATCAGTCT
*
13913237 AAAATGCCT
1 AAAACGCCT
13913246 TCTAATGGTC
Statistics
Matches: 232, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
233 230 0.99
234 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (233 bp):
AAAACGCCTCAGCTTCGTGTTTAATTTCTGTCCCAGTCAATGTCGCGACACAACAAGACCTGTGT
CACGACAGAGGTGACAGTGTACTCCTCCTTAAGACATCTTCAGCGGTATCTCATGACACCCTCAG
TCTATGTTGTGACATCGAAGGCAGTTTCGTACTTTCTCCACTACGTTCTCTATGTTGTGACATCG
GGCCTCCCGTGTTGCTACATAGCATCCAATATCAGTCT
Found at i:13925074 original size:63 final size:63
Alignment explanation
Indices: 13924975--13925114 Score: 253
Period size: 63 Copynumber: 2.2 Consensus size: 63
13924965 AGTAAAGATA
* *
13924975 AAAACTCAAGAGAAAACTGCGTTGTAAGATAAAATAAAAAACTTCGGGAAATAGGACTCAGTG
1 AAAACTCAAGAGAAAACTGCATTGTAAGATAAAATAAAAAACTTCGGGAAAAAGGACTCAGTG
*
13925038 AAAACTCAAGAGAAAACTGCATTGTAAGATAAAATAAAAAACTTTGGGAAAAAGGACTCAGTG
1 AAAACTCAAGAGAAAACTGCATTGTAAGATAAAATAAAAAACTTCGGGAAAAAGGACTCAGTG
13925101 AAAACTCAAGAGAA
1 AAAACTCAAGAGAA
13925115 GATGCACAAA
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
63 74 1.00
ACGTcount: A:0.51, C:0.12, G:0.19, T:0.18
Consensus pattern (63 bp):
AAAACTCAAGAGAAAACTGCATTGTAAGATAAAATAAAAAACTTCGGGAAAAAGGACTCAGTG
Found at i:13932651 original size:90 final size:91
Alignment explanation
Indices: 13932498--13932676 Score: 234
Period size: 90 Copynumber: 2.0 Consensus size: 91
13932488 TCAAATCGCG
** * * *** * *
13932498 TGACTCATTTTAAATACGGAAGGACATTTCTATAATTTCCTAATTGAGTTGGTACCTGGTTAACC
1 TGACTCATTTTAAATACAAAACGACATTTCCATAATTTCCTAACCAAATTAGTACCTGGTTAACC
*
13932563 CGTG-ACACCAACTTAGTCAGGGATT
66 CGTGAACACCAACTAAGTCAGGGATT
*
13932588 TGACTCATTTTAAATACAAAACGACATTTCCATAATTTCCTAACCAAATTAGTACCTGGTTAACT
1 TGACTCATTTTAAATACAAAACGACATTTCCATAATTTCCTAACCAAATTAGTACCTGGTTAACC
*
13932653 TGTGACACACCAACTAAGTCAGGG
66 CGTGA-ACACCAACTAAGTCAGGG
13932677 GTTTTATTAA
Statistics
Matches: 75, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
90 58 0.77
92 17 0.23
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Consensus pattern (91 bp):
TGACTCATTTTAAATACAAAACGACATTTCCATAATTTCCTAACCAAATTAGTACCTGGTTAACC
CGTGAACACCAACTAAGTCAGGGATT
Found at i:13933223 original size:670 final size:660
Alignment explanation
Indices: 13931672--13933259 Score: 1813
Period size: 670 Copynumber: 2.4 Consensus size: 660
13931662 ATGCACTATA
* * * * * * *
13931672 ATATTAAAAAATATATAAAAATATTAAAATGATGATTTAGTTTAATGGTAAATTTAATATTTTAC
1 ATATTAAAAAATGTATAAAAAAATCAAAATAATGTTTTAGTTGAATGGTAAATTTAAAATTTTAC
* * * * *
13931737 TAATTCAATTGGCACGTGTTTAAATCTCATCATATACATATTTTTCTTGGTTTTTGTTAAAATAA
66 TAATCCAATTGGCACGAGTTTAAATCTCTTCATATGCATATTTTTCTTGATTTTTGTTAAAATAA
* * * * * *
13931802 AAATACTAAAATACTCTCAAATAATATGACTCACTTTAAATACAGAAGGACATTTCCATAATTCC
131 AAA-ACTAAAATACCCTCAAATGATATGACTCATTTTAAATACGGAAGGACATTTTCATAATTTC
* **
13931867 CTAACCAAGTTGGTA-CTCGGTTAACCCGTGACACCAACTTATTCAAAGATTTGACTCATTTTAA
195 CTAACCAAGTTGGTACCT-GGTTAACCCGTGACACCAACTTAGTCAGGGATTTGACTCATTTTAA
* * * * * * *
13931931 AAATGAAAAGACATTTCTATAATTTTCTAACCCAATTGGTACCCAGTTAAACTGTGGCACCAATT
259 AAATCAAAAGACATTTCCATAATTTCCTAACCAAATTAGTACCCAGTTAAACTGTGACACCAACT
* * * ** * *
13931996 TAGTCAGAGGTTTTATTAATAGTATAAATATACAACTAATGGGGATAATAATTTGTGCATGTTAA
324 AAGTCAGAGGTTTTATTAATAATATAAATATACAACTAATAGAAATAATAACTTGTGCATATTAA
* *
13932061 AATAAATATGTATAAATATATCAAAATGAAGCTTTAGTTAATTGGTAAATTTAAGATTTTACTAG
389 AATAAATATGTATAAATACATCAAAATGAAGCTTTAGTTAAGTGGTAAATTTAAGATTTTACTAG
* * *
13932126 TCCAATTGGCTCGGGTTTAAATACAACCATATGCATATTTTAATATTAAAATGAAGATATTCAAA
454 TCCAATTGACTCGAGTTTAAATACAACCATATGCATATTTTAATATTAAAATGAAAATATTCAAA
* **
13932191 CATTCACAAATATTATAACTTATTAAAATTACAAAAGGACATTTTTTAATTTTTTAACTGAGTTG
519 CATTCACAAATATTATAACTTATTAAAATTACAAAAGGACATTTTATAATTTTTTAACCAAGTTG
* *
13932256 GTGATCCAGTTGAAGGTGACATCAAATCAATAAAACACTTAATAAATAGTATAGATATACAACTA
584 GTGAACCAGTTGAAGGTGACATC--A-C-----AACACTTAATAAATAGCATAGATATACAACTA
* *
13932321 GTGGAGATAATAAATTGTGC
641 GTAGACATAATAAATTGTGC
* * * **
13932341 ATATTAAAAAATGTATTAAAAAAATCAAAATAATGTTTTGGCTGAACGGTAAATTTAAGGTTTTA
1 ATATTAAAAAATGTA-TAAAAAAATCAAAATAATGTTTTAGTTGAATGGTAAATTTAAAATTTTA
* *
13932406 CTAATCCAATTGGCACAAGTTTAAATCCCTTCATATGCATATTTTTCTT-AGTTTTTGTTAAAAT
65 CTAATCCAATTGGCACGAGTTTAAATCTCTTCATATGCATATTTTTCTTGA-TTTTTGTTAAAAT
* * **
13932470 GAAAAGACTAAAATATCCTCAAATCG-CGTGACTCATTTTAAATACGGAAGGACA-TTTCTATAA
129 -AAAAAACTAAAATACCCTCAAAT-GATATGACTCATTTTAAATACGGAAGGACATTTTC-ATAA
***
13932533 TTTCCTAATTGAGTTGGTACCTGGTTAACCCGTGACACCAACTTAGTCAGGGATTTGACTCATTT
191 TTTCCTAACCAAGTTGGTACCTGGTTAACCCGTGACACCAACTTAGTCAGGGATTTGACTCATTT
* **
13932598 TAAATA-CAAAACGACATTTCCATAATTTCCTAACCAAATTAGTACCTGGTT-AACTTGTGACAC
256 TAAAAATCAAAA-GACATTTCCATAATTTCCTAACCAAATTAGTACCCAGTTAAAC-TGTG--AC
* * * *
13932661 ACCAACTAAGTCAGGGGTTTTATTAATAATATAGATATCCAGCTAATAGAAATAATAACTTGTGC
317 ACCAACTAAGTCAGAGGTTTTATTAATAATATAAATATACAACTAATAGAAATAATAACTTGTGC
* *
13932726 ATATTAAAATAAA-ATTGTATAAATACATCAAAATGAAG-TTTTGATTGAGTGGTAAATTTAAGA
382 ATATTAAAATAAATA-TGTATAAATACATCAAAATGAAGCTTTAG-TTAAGTGGTAAATTTAAGA
* * * * *
13932789 TTTTACTAGTCCAGTTGACTTGATTTTAAATCCAACCATTTGCATATTTTAATTGGTTTTTATTA
445 TTTTACTAGTCCAATTGACTCGAGTTTAAATACAACCATATGCATATTTTAA--------TATTA
* ** *** * *
13932854 AAATGAAAATATT-AATATATTCACAAATATTATAACTTATTTTAATTATGGAAGGGCCTTTTCA
502 AAATGAAAATATTCAA-ACATTCACAAATATTATAACTTATTAAAATTACAAAAGGACATTTT-A
* **
13932918 T-ATTTTTTAACCAAGTTGGT-AACACGGTTGGGGGTGACA-C-C-A-ACTTAATAAATAGCATA
565 TAATTTTTTAACCAAGTTGGTGAAC-CAGTTGAAGGTGACATCACAACACTTAATAAATAGCATA
*
13932977 GATATATACAACTGGTAGACATAATAAATTGTGC
629 G--ATATACAACTAGTAGACATAATAAATTGTGC
*
13933011 ATATTAAAAAATGTATAAAAAACATCAAAATAATGCTTTTAGTTGAGTGGTAAA-TTAAAATTTT
1 ATATTAAAAAATGTATAAAAAA-ATCAAAATAATG-TTTTAGTTGAATGGTAAATTTAAAATTTT
* * * *
13933075 ATTTATCCAATTAGCACGAGTTTAAATCTCTTTATATGCATATTTTTCTTGATTTTTGTTAAAAT
64 ACTAATCCAATTGGCACGAGTTTAAATCTCTTCATATGCATATTTTTCTTGATTTTTGTTAAAAT
* *
13933140 AAAAAACCTAAAATGCCCTCAAATGATATGACTCATTTTAAATATGGAAGGACATTTTCATAATT
129 AAAAAA-CTAAAATACCCTCAAATGATATGACTCATTTTAAATACGGAAGGACATTTTCATAATT
* ** * * * *
13933205 TCCTAACCAAGATGGTACCAAAGTTAGCCCGTAACACCAACTCAGTTAGGGATTT
193 TCCTAACCAAGTTGGTACC-TGGTTAACCCGTGACACCAACTTAGTCAGGGATTT
13933260 TATTAATAAT
Statistics
Matches: 773, Mismatches: 114, Indels: 62
0.81 0.12 0.07
Matches are distributed among these distances:
668 17 0.02
669 38 0.05
670 417 0.54
671 59 0.08
672 151 0.20
675 1 0.00
679 5 0.01
680 84 0.11
681 1 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (660 bp):
ATATTAAAAAATGTATAAAAAAATCAAAATAATGTTTTAGTTGAATGGTAAATTTAAAATTTTAC
TAATCCAATTGGCACGAGTTTAAATCTCTTCATATGCATATTTTTCTTGATTTTTGTTAAAATAA
AAAACTAAAATACCCTCAAATGATATGACTCATTTTAAATACGGAAGGACATTTTCATAATTTCC
TAACCAAGTTGGTACCTGGTTAACCCGTGACACCAACTTAGTCAGGGATTTGACTCATTTTAAAA
ATCAAAAGACATTTCCATAATTTCCTAACCAAATTAGTACCCAGTTAAACTGTGACACCAACTAA
GTCAGAGGTTTTATTAATAATATAAATATACAACTAATAGAAATAATAACTTGTGCATATTAAAA
TAAATATGTATAAATACATCAAAATGAAGCTTTAGTTAAGTGGTAAATTTAAGATTTTACTAGTC
CAATTGACTCGAGTTTAAATACAACCATATGCATATTTTAATATTAAAATGAAAATATTCAAACA
TTCACAAATATTATAACTTATTAAAATTACAAAAGGACATTTTATAATTTTTTAACCAAGTTGGT
GAACCAGTTGAAGGTGACATCACAACACTTAATAAATAGCATAGATATACAACTAGTAGACATAA
TAAATTGTGC
Found at i:13938007 original size:17 final size:17
Alignment explanation
Indices: 13937969--13938007 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
13937959 TGGACTTTAA
13937969 ATTTTTTTTGTTTTGTT
1 ATTTTTTTTGTTTTGTT
*
13937986 TTTTTTTTTGGTTTT-TT
1 ATTTTTTTT-GTTTTGTT
13938003 ATTTT
1 ATTTT
13938008 ACTAACGGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.05, C:0.00, G:0.10, T:0.85
Consensus pattern (17 bp):
ATTTTTTTTGTTTTGTT
Found at i:13939828 original size:15 final size:15
Alignment explanation
Indices: 13939810--13939839 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
13939800 TTTACTATTA
*
13939810 TGTCTTTTATGTTTT
1 TGTCTTTCATGTTTT
13939825 TGTCTTTCATGTTTT
1 TGTCTTTCATGTTTT
13939840 GCATGCACAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.10, G:0.13, T:0.70
Consensus pattern (15 bp):
TGTCTTTCATGTTTT
Found at i:13941376 original size:61 final size:58
Alignment explanation
Indices: 13941304--13941419 Score: 171
Period size: 61 Copynumber: 1.9 Consensus size: 58
13941294 AGTGATTATC
* *
13941304 TTAATATTAAATTTAATTTAATATTTATCTTATAGATAAA-TATTCTATTAATTTAATAGAT
1 TTAATATTAAATTTAATCTAATATTTATC-T-T-GA-AAAGTATTATATTAATTTAATAGAT
13941365 TTAATATTAAATTTAATCTAATATTTATCTTGAAAAGTATTATATTAATTTAATA
1 TTAATATTAAATTTAATCTAATATTTATCTTGAAAAGTATTATATTAATTTAATA
13941420 TTAAAGTGAT
Statistics
Matches: 52, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
57 3 0.06
58 19 0.37
59 1 0.02
60 1 0.02
61 28 0.54
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.50
Consensus pattern (58 bp):
TTAATATTAAATTTAATCTAATATTTATCTTGAAAAGTATTATATTAATTTAATAGAT
Found at i:13941439 original size:58 final size:60
Alignment explanation
Indices: 13941306--13941439 Score: 161
Period size: 58 Copynumber: 2.2 Consensus size: 60
13941296 TGATTATCTT
* * *
13941306 AATATTAAATTTAATTTAATATTTATCTTATAGATAAATATTCTATTAATTTAATAGATTT
1 AATATTAAATTTAATCTAATATTTATCTTATAGATAAATATTATATTAATTTAATA-ATTA
13941367 AATATTAAATTTAATCTAATATTTATC-T-T-GA-AAAGTATTATATTAATTTAAT-ATTA
1 AATATTAAATTTAATCTAATATTTATCTTATAGATAAA-TATTATATTAATTTAATAATTA
*
13941423 AAGTGATTAAGTTTAAT
1 AA-T-ATTAAATTTAAT
13941440 TATAGTTGAA
Statistics
Matches: 66, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
56 5 0.08
57 4 0.06
58 29 0.44
59 1 0.02
60 1 0.02
61 26 0.39
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (60 bp):
AATATTAAATTTAATCTAATATTTATCTTATAGATAAATATTATATTAATTTAATAATTA
Found at i:13941922 original size:12 final size:12
Alignment explanation
Indices: 13941881--13941924 Score: 52
Period size: 12 Copynumber: 3.4 Consensus size: 12
13941871 ATAACAAAGT
13941881 CCAAATACCAAGC
1 CCAAATA-CAAGC
*
13941894 CCAAACTTACAAAC
1 CCAAA--TACAAGC
13941908 CCAAATACAAGC
1 CCAAATACAAGC
13941920 CCAAA
1 CCAAA
13941925 AAATTAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
12 11 0.41
13 5 0.19
14 9 0.33
15 2 0.07
ACGTcount: A:0.50, C:0.36, G:0.05, T:0.09
Consensus pattern (12 bp):
CCAAATACAAGC
Done.