Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 50 of 196
Found at i:13942028 original size:4 final size:4
Alignment explanation
Indices: 13942019--13942108 Score: 60
Period size: 4 Copynumber: 22.8 Consensus size: 4
13942009 TTTTCACTTG
* ** * * *
13942019 TTTA TTTA TTGA -TTA TTCC TTTTA TTTTA TTCA TTCA TTTA TTCA TTTA
1 TTTA TTTA TTTA TTTA TTTA TT-TA TT-TA TTTA TTTA TTTA TTTA TTTA
* * *
13942068 CTTA TTTA TATA -TTA TTTA TTCA TTTA TTTA TTTA -TTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
13942109 TAATCCTTCT
Statistics
Matches: 66, Mismatches: 16, Indels: 8
0.73 0.18 0.09
Matches are distributed among these distances:
3 7 0.11
4 52 0.79
5 7 0.11
ACGTcount: A:0.24, C:0.08, G:0.01, T:0.67
Consensus pattern (4 bp):
TTTA
Found at i:13942087 original size:27 final size:26
Alignment explanation
Indices: 13942044--13942107 Score: 92
Period size: 27 Copynumber: 2.3 Consensus size: 26
13942034 TTCCTTTTAT
13942044 TTTATTCATTCATTTATTCATTTACTTA
1 TTTATT-ATT-ATTTATTCATTTACTTA
*
13942072 TTTATATATTATTTATTCATTTATTTA
1 TTTAT-TATTATTTATTCATTTACTTA
13942099 TTTATTATT
1 TTTATTATT
13942108 TTAATCCTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
26 4 0.12
27 21 0.62
28 8 0.24
29 1 0.03
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.66
Consensus pattern (26 bp):
TTTATTATTATTTATTCATTTACTTA
Found at i:13942156 original size:30 final size:29
Alignment explanation
Indices: 13942091--13942163 Score: 76
Period size: 30 Copynumber: 2.4 Consensus size: 29
13942081 TATTTATTCA
*
13942091 TTTATTTATTTATTATTTTAATCCTTCTT
1 TTTATTTATTTATTATTTTAATCCTTCTG
* *
13942120 TGTTATTTATTTATT-TTTTGATACTTTCATG
1 T-TTATTTATTTATTATTTTAAT-CCTTC-TG
*
13942151 TTTATTTTTTTAT
1 TTTATTTATTTAT
13942164 GCATATTCCA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
29 7 0.19
30 28 0.76
31 2 0.05
ACGTcount: A:0.19, C:0.07, G:0.04, T:0.70
Consensus pattern (29 bp):
TTTATTTATTTATTATTTTAATCCTTCTG
Found at i:13954621 original size:26 final size:26
Alignment explanation
Indices: 13954592--13954646 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
13954582 TTTGCGTAAT
13954592 CCAACTCAAACACAAGTGGATTAACA
1 CCAACTCAAACACAAGTGGATTAACA
* *
13954618 CCAACTTAAACACAAGTGGGTTAACA
1 CCAACTCAAACACAAGTGGATTAACA
13954644 CCA
1 CCA
13954647 TAAATAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.44, C:0.27, G:0.13, T:0.16
Consensus pattern (26 bp):
CCAACTCAAACACAAGTGGATTAACA
Found at i:13967011 original size:15 final size:16
Alignment explanation
Indices: 13966991--13967021 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
13966981 GATTTTTAGG
13966991 ATGTAATTATT-TTTT
1 ATGTAATTATTATTTT
13967006 ATGTAATTATTATTTT
1 ATGTAATTATTATTTT
13967022 TTATATATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (16 bp):
ATGTAATTATTATTTT
Found at i:13971273 original size:24 final size:24
Alignment explanation
Indices: 13971246--13971291 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
13971236 AGAACAATCC
* *
13971246 CAAAAGGAAATGCAGGAGCAGCTT
1 CAAAAGCAAATGAAGGAGCAGCTT
*
13971270 CAAAAGCAAATGAATGAGCAGC
1 CAAAAGCAAATGAAGGAGCAGC
13971292 AAAAGATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.17, G:0.26, T:0.11
Consensus pattern (24 bp):
CAAAAGCAAATGAAGGAGCAGCTT
Found at i:13979346 original size:44 final size:42
Alignment explanation
Indices: 13979283--13979909 Score: 156
Period size: 44 Copynumber: 14.5 Consensus size: 42
13979273 TAACAGATCG
13979283 AGTCTTATCTCCTTGAAGTTGCACTGGAGCAGACTAAATAAGCA
1 AGTCTTATCTCC-TGAAGTTGCACTGGAGCAGACTAAAT-AGCA
* *
13979327 AGTCTTATTCTCCTGAAGTT--ACAGCGAGACAGACTGAAGATGGCA
1 AGTCTTA-TCTCCTGAAGTTGCACTG-GAG-CAGACT-AA-ATAGCA
* * * **
13979372 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGACA
1 AGTCTTATCT-CCTGAAGTTGCACTGGAGCAGACTAAA-TAG-CA
* * ** * * *
13979417 A-TCCTATCTCGCTGAAGTTGCAGTGG-GTGGATTAAA-ACCTC
1 AGTCTTATCTC-CTGAAGTTGCACTGGAGCAGACTAAATAGC-A
* ** *
13979458 AGATCTTATCTCTCTGAAGTTGTA--GAGAGCAGA-TCGCAT--CT
1 AG-TCTTATCTC-CTGAAGTTGCACTG-GAGCAGACT-AAATAGCA
* * *
13979499 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCGGACTAAGTAAGCA
1 AGTCTTATCT-CCTGAAGTTGCACTGGAGCAGACTAAAT-AGCA
* * * * * *
13979543 AGTTTTATCCTCTTGAAATTGCAGT-GAGGCAGACTGAAGATGGAA
1 AGTCTTAT-CTCCTGAAGTTGCACTGGA-GCAGACT-AA-ATAGCA
* * * * ** *
13979588 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCGGTA
1 AGTCTTATCT-CCTGAAGTTGCACTGGAGCAGACTAAA--TAGCA
* * * * *
13979633 A-TCCTATCTCGCTGAAGTTGCAGTGG-GCAGATTAAA-ACCTT
1 AGTCTTATCTC-CTGAAGTTGCACTGGAGCAGACTAAATAGC-A
* * * *
13979674 AGATCTTATCTCTCTGAAATTG---TAGAG-AG-C-AGATCGC-
1 AG-TCTTATCTC-CTGAAGTTGCACTGGAGCAGACTAAATAGCA
* * *
13979711 A-TCTTATCTCCCTGAAGTTGCAGTGGAGCGGACTAAGTAAGCA
1 AGTCTTATCT-CCTGAAGTTGCACTGGAGCAGACTAAAT-AGCA
* *
13979754 AGTCTTATCCTCCTGAAGTTGCAGT-GAGGCAGACTGAAGATGGCA
1 AGTCTTAT-CTCCTGAAGTTGCACTGGA-GCAGACT-AA-ATAGCA
* * * *
13979799 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGA-TTAA-AGCCGA
1 AGTCTTATCT-CCTGAAGTTGCACTGGAGCAGACTAAATAG-C-A
* * * * *
13979842 TAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTGAAAT--CA
1 -AGTCTTATCT-CCTGAAGTTGCACTGGAGCAGACT-AAATAGCA
13979885 CAGATCTTATCTCTCTGAAGTTGCA
1 -AG-TCTTATCTC-CTGAAGTTGCA
13979910 GAGAGCAGAT
Statistics
Matches: 443, Mismatches: 77, Indels: 126
0.69 0.12 0.20
Matches are distributed among these distances:
35 16 0.04
36 1 0.00
37 1 0.00
38 6 0.01
39 2 0.00
40 24 0.05
41 17 0.04
42 12 0.03
43 73 0.16
44 177 0.40
45 99 0.22
46 13 0.03
47 2 0.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.27
Consensus pattern (42 bp):
AGTCTTATCTCCTGAAGTTGCACTGGAGCAGACTAAATAGCA
Found at i:13979468 original size:43 final size:44
Alignment explanation
Indices: 13979372--13979919 Score: 274
Period size: 44 Copynumber: 12.8 Consensus size: 44
13979362 GAAGATGGCA
*
13979372 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCGAC
* * ** *
13979416 AATCCTATCTCGCTGAAGTTGCAGTGG-GTGGATTAAAACC-TC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCGAC
* * * *** * *
13979458 AGATCTTATCTCTCTGAAGTTGTAG-AGAGCAGA-TCGCATC--T
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCGAC
* * *
13979499 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCGGACTAAGTAA--G-C
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA--AACCGAC
* * * * * ** *
13979542 AAGTTTTATC-CTCTTGAAATTGCAGT-GAGGCAGACTGAAGATGGAA
1 AA-TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TTAAAACCGAC
* * **
13979588 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCGGT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCGAC
* * *
13979632 AATCCTATCTCGCTGAAGTTGCAGTGG-GCAGATTAAAACCTTA-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC-GAC
* * * * *
13979675 GATCTTATCTCTCTGAAATTGTAG-AGAGCAGA-T-----CG-C
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCGAC
* *
13979711 -ATCTTATCTCCCTGAAGTTGCAGTGGAGCGGACTAAGTAA--G-C
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA--AACCGAC
* * * *
13979753 AAGTCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAGA-TGGC
1 AA-TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TTAAAACCGAC
* * *
13979798 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCGAT
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCGAC
* * * *
13979843 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTGAAATC-AC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCGAC
* *
13979886 AGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGAT
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
13979920 CGCATCTAGT
Statistics
Matches: 379, Mismatches: 86, Indels: 79
0.70 0.16 0.15
Matches are distributed among these distances:
35 20 0.05
36 6 0.02
37 2 0.01
40 20 0.05
41 7 0.02
42 11 0.03
43 88 0.23
44 161 0.42
45 54 0.14
46 10 0.03
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCGAC
Found at i:13979657 original size:216 final size:216
Alignment explanation
Indices: 13979283--13979965 Score: 1079
Period size: 216 Copynumber: 3.2 Consensus size: 216
13979273 TAACAGATCG
* * * * *
13979283 AGTCTTATCTCCTTGAAGTTGCACTGGAGCAGACTAAATAAGCAAGTCTTATTCTCCTGAAGTTA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTG
* * *
13979348 CAGCGAGACAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCC
66 CAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCC
* *
13979413 GACAATCCTATCTCGCTGAAGTTGCAGTGGGTGGATTAAAACCTCAGATCTTATCTCTCTGAAGT
131 GATAATCCTATCTCGCTGAAGTTGCAGTGGGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGT
13979478 TGTAGAGAGCAGATCGCATCT
196 TGTAGAGAGCAGATCGCATCT
* * * *
13979499 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCGGACTAAGTAAGCAAGTTTTATCCTCTTGAAATTG
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTG
*
13979564 CAGTGAGGCAGACTGAAGATGGAAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCC
66 CAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCC
* * * *
13979629 GGTAATCCTATCTCGCTGAAGTTGCAGTGGGCAGATTAAAACCTTAGATCTTATCTCTCTGAAAT
131 GATAATCCTATCTCGCTGAAGTTGCAGTGGGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGT
13979694 TGTAGAGAGCAGATCG---C-
196 TGTAGAGAGCAGATCGCATCT
*
13979711 A-TCTTATCTCCCTGAAGTTGCAGTGGAGCGGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTG
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTG
13979775 CAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCC
66 CAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCC
* * * *
13979840 GATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTGAAATCACAGATCTTATCTCTCTGAAG
131 GATAATCCTATCTCGCTGAAGTTGCAGTGG-GCGGATTAAAACCTCAGATCTTATCTCTCTGAAG
*
13979905 TTGCAGAGAGCAGATCGCATCT
195 TTGTAGAGAGCAGATCGCATCT
*
13979927 AGTCTTATTTCCCTGAAGATTGCAGTGGAGCAGACTAAG
1 AGTCTTATCTCCCTGAAG-TTGCAGTGGAGCAGACTAAG
13979966 ATAGTAAATT
Statistics
Matches: 426, Mismatches: 34, Indels: 12
0.90 0.07 0.03
Matches are distributed among these distances:
211 152 0.36
212 45 0.11
213 1 0.00
215 1 0.00
216 193 0.45
217 15 0.04
218 19 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (216 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTG
CAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCC
GATAATCCTATCTCGCTGAAGTTGCAGTGGGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGT
TGTAGAGAGCAGATCGCATCT
Found at i:13979910 original size:44 final size:43
Alignment explanation
Indices: 13979711--13979964 Score: 189
Period size: 44 Copynumber: 5.8 Consensus size: 43
13979701 AGCAGATCGC
* * *
13979711 ATCTTATCTCCCTGAAGTTGCAGTGGAGCGGACTAAGTAAGCAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATCA-CAA
* **
13979755 GTCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAGATGGCAA
1 ATCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AA-ATCACAA
* * *
13979800 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGC-CGATA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATCAC-A-A
* * * *
13979844 ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTGAAATCACAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAATCACAA
* * ** *
13979888 ATCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T--CGCATCTA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATCA-CAA
* *
13979928 GTCTTATTTCCCTGAAGATTGCAGTGGAGCAGACTAA
1 ATCTTATCTCCCTGAAG-TTGCAGTGGAGCAGACTAA
13979965 GATAGTAAAT
Statistics
Matches: 167, Mismatches: 27, Indels: 31
0.74 0.12 0.14
Matches are distributed among these distances:
39 2 0.01
40 15 0.09
41 6 0.04
42 9 0.05
43 12 0.07
44 82 0.49
45 36 0.22
46 5 0.03
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (43 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATCACAA
Found at i:13981486 original size:16 final size:17
Alignment explanation
Indices: 13981467--13981499 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
13981457 GATTTTTAGG
13981467 ATGTAATTATT-TTTTT
1 ATGTAATTATTATTTTT
13981483 ATGTAATTATTATTTTT
1 ATGTAATTATTATTTTT
13981500 TATATATGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (17 bp):
ATGTAATTATTATTTTT
Found at i:13987003 original size:41 final size:40
Alignment explanation
Indices: 13986973--13987116 Score: 157
Period size: 40 Copynumber: 3.6 Consensus size: 40
13986963 ATTATAATCC
* *
13986973 CGCACACTAAGTGCCTTACATAGCCAAAGCTATCT-CAGT
1 CGCACACTAAGTGCCATACATAGCCAAAGCTATCTCCAAT
* * *
13987012 CTTACACACTAAGTGCCATATATAGCTAAAGCTAT-TCCCAAT
1 C--GCACACTAAGTGCCATACATAGCCAAAGCTATCT-CCAAT
* * *
13987054 CGCACACTAAGTGCCATAAATAGCCGAAGCTATCTCGAAT
1 CGCACACTAAGTGCCATACATAGCCAAAGCTATCTCCAAT
* *
13987094 CGCACACTAAGTGCTAAACATAG
1 CGCACACTAAGTGCCATACATAG
13987117 TCGATTAATC
Statistics
Matches: 87, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
39 1 0.01
40 53 0.61
41 29 0.33
42 4 0.05
ACGTcount: A:0.35, C:0.28, G:0.15, T:0.23
Consensus pattern (40 bp):
CGCACACTAAGTGCCATACATAGCCAAAGCTATCTCCAAT
Found at i:13992431 original size:41 final size:39
Alignment explanation
Indices: 13992360--13992535 Score: 158
Period size: 40 Copynumber: 4.3 Consensus size: 39
13992350 CTCAATGTTT
* * *
13992360 CGCACACTAAATGCCATCGCATAGCCGAAGCTATTATAATCC
1 CGCACACTAAGTGCCAT-ACATAGCCGAAGCTATT-CAAT-C
* * *
13992402 CGCACACTAAGTGCCCTACATAGCTGAAGCTATCTCAGTC
1 CGCACACTAAGTGCCATACATAGCCGAAGCTAT-TCAATC
* *
13992442 TCGCACACTAATTGCCATATATAGCCGAAGCTATTCCCAAT-
1 -CGCACACTAAGTGCCATACATAGCCGAAGCTATT--CAATC
* *
13992483 CACACACTAAGTGCCATAAATAGCCGAAGCTATCTCGAAT-
1 CGCACACTAAGTGCCATACATAGCCGAAGCTAT-TC-AATC
*
13992523 TGCACACTAAGTG
1 CGCACACTAAGTG
13992536 TTAAACATAG
Statistics
Matches: 112, Mismatches: 16, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
39 1 0.01
40 46 0.41
41 46 0.41
42 19 0.17
ACGTcount: A:0.32, C:0.30, G:0.15, T:0.23
Consensus pattern (39 bp):
CGCACACTAAGTGCCATACATAGCCGAAGCTATTCAATC
Found at i:13992506 original size:81 final size:82
Alignment explanation
Indices: 13992359--13992518 Score: 207
Period size: 81 Copynumber: 2.0 Consensus size: 82
13992349 ACTCAATGTT
* * * * *
13992359 TCGCACACTAAATGCCATCGCATAGCCGAAGCTATTATAATCCCGCACACTAAGTGCCCTACATA
1 TCGCACACTAAATGCCATCACATAGCCGAAGCTATTACAAT-CCACACACTAAGTGCCATAAATA
*
13992424 GCTGAAGCTATCTCAGTC
65 GCCGAAGCTATCTCAGTC
* * *
13992442 TCGCACACTAATTGCCAT-ATATAGCCGAAGCTATTCCCAAT-CACACACTAAGTGCCATAAATA
1 TCGCACACTAAATGCCATCACATAGCCGAAGCTATT-ACAATCCACACACTAAGTGCCATAAATA
13992505 GCCGAAGCTATCTC
65 GCCGAAGCTATCTC
13992519 GAATTGCACA
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
81 32 0.48
82 15 0.22
83 20 0.30
ACGTcount: A:0.32, C:0.31, G:0.14, T:0.23
Consensus pattern (82 bp):
TCGCACACTAAATGCCATCACATAGCCGAAGCTATTACAATCCACACACTAAGTGCCATAAATAG
CCGAAGCTATCTCAGTC
Found at i:13994103 original size:19 final size:21
Alignment explanation
Indices: 13994079--13994119 Score: 68
Period size: 19 Copynumber: 2.0 Consensus size: 21
13994069 GCATCCTTTC
13994079 ATGGGCGTG-TG-CCCCCCAT
1 ATGGGCGTGTTGACCCCCCAT
13994098 ATGGGCGTGTTGACCCCCCAT
1 ATGGGCGTGTTGACCCCCCAT
13994119 A
1 A
13994120 CAGCCTAGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 9 0.45
20 2 0.10
21 9 0.45
ACGTcount: A:0.15, C:0.34, G:0.29, T:0.22
Consensus pattern (21 bp):
ATGGGCGTGTTGACCCCCCAT
Found at i:13999243 original size:14 final size:14
Alignment explanation
Indices: 13999211--13999240 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
13999201 ATTTCAGTAG
13999211 GTTAATTTAAGTTA
1 GTTAATTTAAGTTA
13999225 GTTAATTTAA-TTA
1 GTTAATTTAAGTTA
13999238 GTT
1 GTT
13999241 TAAATAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.53
Consensus pattern (14 bp):
GTTAATTTAAGTTA
Found at i:14005543 original size:50 final size:50
Alignment explanation
Indices: 14005463--14005705 Score: 269
Period size: 50 Copynumber: 4.9 Consensus size: 50
14005453 CATTTGGGTA
*
14005463 AAGAGGTCCCATGTAAGACCATGTCCGGGACATGGCATTGGCATCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGAT
*
14005513 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGAT
* ** * * * * *
14005563 GAGAGGTCCCCCGTAAGACCATGTCTGGAACATGGCATGGGCACCAATAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGAT
* ** * *
14005613 GAGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCATTAC-AGGA-
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-T-CGA-GAT
* * *
14005664 AACA--TCTCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
14005706 ATTATTATCA
Statistics
Matches: 165, Mismatches: 25, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
48 1 0.01
49 33 0.20
50 126 0.76
51 3 0.02
52 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGAT
Found at i:14014819 original size:30 final size:30
Alignment explanation
Indices: 14014785--14014844 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
14014775 ACTTATTTTA
*
14014785 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAAATTTGTTATTATTTTAAAGGCAT
*
14014815 TTGTTAAATTTGTTATTATTTTAGAGGCAT
1 TTGTTAAATTTGTTATTATTTTAAAGGCAT
14014845 ATGCTTGTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.27, C:0.03, G:0.15, T:0.55
Consensus pattern (30 bp):
TTGTTAAATTTGTTATTATTTTAAAGGCAT
Found at i:14015941 original size:23 final size:24
Alignment explanation
Indices: 14015898--14015944 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
14015888 TCAAATGTAT
*
14015898 TTACATATTTAAATTTCTTTTTAC
1 TTACATATTTAAATATCTTTTTAC
*
14015922 TTACAT-TTTAAACTATTTTTTTA
1 TTACATATTTAAA-TATCTTTTTA
14015945 TTTTAATTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.30, C:0.11, G:0.00, T:0.60
Consensus pattern (24 bp):
TTACATATTTAAATATCTTTTTAC
Found at i:14022601 original size:34 final size:34
Alignment explanation
Indices: 14022559--14022638 Score: 115
Period size: 34 Copynumber: 2.4 Consensus size: 34
14022549 TGGTAGGTGC
* *
14022559 ATATATAATATTAACATGTGTGCATGGTTTTGTT
1 ATATATAATATAAACATGGGTGCATGGTTTTGTT
* **
14022593 ATATATAATATAAATATGGGTGTGTGGTTTTGTT
1 ATATATAATATAAACATGGGTGCATGGTTTTGTT
14022627 ATATATAATATA
1 ATATATAATATA
14022639 TATGCATGAG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 41 1.00
ACGTcount: A:0.34, C:0.03, G:0.17, T:0.46
Consensus pattern (34 bp):
ATATATAATATAAACATGGGTGCATGGTTTTGTT
Found at i:14022985 original size:18 final size:18
Alignment explanation
Indices: 14022964--14023002 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
14022954 ATTTGGTGAT
14022964 CTGTATTAATATGACAAA
1 CTGTATTAATATGACAAA
* *
14022982 CTGTATTAATTTGCCAAA
1 CTGTATTAATATGACAAA
14023000 CTG
1 CTG
14023003 CGGATTGTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (18 bp):
CTGTATTAATATGACAAA
Found at i:14029225 original size:21 final size:21
Alignment explanation
Indices: 14029199--14029261 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
14029189 TTGGTATTTG
14029199 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
14029220 GGAATTGGTATGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
* *
14029241 GGTATTTGGTACGAATTGGTA
1 GG-AATTGGTACGAAATGGTA
14029262 ATAGTTCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 22 0.59
22 15 0.41
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.33
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:14035594 original size:18 final size:18
Alignment explanation
Indices: 14035571--14035605 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
14035561 CCCAGCCGTC
14035571 TTCTCATTTCTTTCTCAT
1 TTCTCATTTCTTTCTCAT
14035589 TTCTCATTTCTTTCTCA
1 TTCTCATTTCTTTCTCA
14035606 CGTCTGAAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.29, G:0.00, T:0.60
Consensus pattern (18 bp):
TTCTCATTTCTTTCTCAT
Found at i:14036870 original size:7 final size:7
Alignment explanation
Indices: 14036858--14036885 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
14036848 ATATGTGGAA
14036858 ATCAAGT
1 ATCAAGT
14036865 ATCAAGT
1 ATCAAGT
14036872 ATCAAGT
1 ATCAAGT
14036879 ATCAAGT
1 ATCAAGT
14036886 TTCGAATTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (7 bp):
ATCAAGT
Found at i:14038601 original size:22 final size:21
Alignment explanation
Indices: 14038553--14038602 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
14038543 AATAATTATG
*
14038553 TTATATTATATTTTATACTAT
1 TTATATTATATTTTATACAAT
14038574 TATATATTATAATTTTAGTA-AAT
1 T-TATATTAT-ATTTTA-TACAAT
14038597 TTATAT
1 TTATAT
14038603 AAGAATATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 1 0.04
22 13 0.52
23 9 0.36
24 2 0.08
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (21 bp):
TTATATTATATTTTATACAAT
Found at i:14038618 original size:59 final size:58
Alignment explanation
Indices: 14038555--14038731 Score: 169
Period size: 59 Copynumber: 3.0 Consensus size: 58
14038545 TAATTATGTT
* *
14038555 ATATTATATTTTATACTATTATATATTATAATTTTAGTAAATTTATATAAGAATATTTA
1 ATATTATATTTTATA-TATCATATATTATAATTTAAGTAAATTTATATAAGAATATTTA
* * * * * * *
14038614 ATATTAAGAATTTTATTAAATCATATATTTTAATTAAAATATATTTA-ATAATAATTATGTTA
1 ATATT-A-TATTTTA-TATATCATATATTATAATTTAAGTAAATTTATATAAGAA-TAT-TTA
* * *
14038676 A-ATTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATT
1 ATATTATATTTTATA-TATCATATATTATAATTTAAGTAAATTTATATAAGAATATT
14038732 GATTATTAAG
Statistics
Matches: 92, Mismatches: 19, Indels: 15
0.73 0.15 0.12
Matches are distributed among these distances:
58 3 0.03
59 35 0.38
60 14 0.15
61 34 0.37
62 6 0.07
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (58 bp):
ATATTATATTTTATATATCATATATTATAATTTAAGTAAATTTATATAAGAATATTTA
Found at i:14038648 original size:61 final size:61
Alignment explanation
Indices: 14038575--14038768 Score: 191
Period size: 61 Copynumber: 3.2 Consensus size: 61
14038565 TTATACTATT
*
14038575 ATATATTATAATTTTAGTAAATTTATATAAGAATATTTAATATTAAGAATTTTATTAAATC
1 ATATATTATAATTTAAGTAAATTTATATAAGAATATTTAATATTAAGAATTTTATTAAATC
* * * * * * *
14038636 ATATATTTTAATTAAAATATATTTA-ATAATAATTATGTTAA-ATT-A-TATTTTA-TAGTATC
1 ATATATTATAATTTAAGTAAATTTATATAAGAA-TAT-TTAATATTAAGAATTTTATTA-AATC
* * * * * *
14038695 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATAATTTAAGTAAATTTATATAAGAATATTTAATATTAAGAATTTTATTAAATC
*
14038756 ATATATTTTAATT
1 ATATATTATAATT
14038769 AAAATATATT
Statistics
Matches: 102, Mismatches: 23, Indels: 16
0.72 0.16 0.11
Matches are distributed among these distances:
58 4 0.04
59 33 0.32
60 14 0.14
61 45 0.44
62 6 0.06
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.49
Consensus pattern (61 bp):
ATATATTATAATTTAAGTAAATTTATATAAGAATATTTAATATTAAGAATTTTATTAAATC
Found at i:14038714 original size:120 final size:120
Alignment explanation
Indices: 14038533--14038799 Score: 444
Period size: 120 Copynumber: 2.2 Consensus size: 120
14038523 AAAATTTGAT
* * *
14038533 TATATTTAATAATAATTATGTTATATTATATTTTATACTATTATATATTATAATTTTAGTAAATT
1 TATATTTAATAATAATTATGTTAAATTATATTTTATACTATCATATATTATAATTTGAGTAAATT
* *
14038598 TATATAAGAATATTTAATATTAAGAATTTTATTAAATCATATATTTTAATTAAAA
66 CATATAAGAATATTGAATATTAAGAATTTTATTAAATCATATATTTTAATTAAAA
* *
14038653 TATATTTAATAATAATTATGTTAAATTATATTTTATAGTATCATATATTATGATTTGAGTAAATT
1 TATATTTAATAATAATTATGTTAAATTATATTTTATACTATCATATATTATAATTTGAGTAAATT
* *
14038718 CATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAA
66 CATATAAGAATATTGAATATTAAGAATTTTATTAAATCATATATTTTAATTAAAA
14038773 TATATTTAATAATAATTATGTTTAAAT
1 TATATTTAATAATAATTATG-TTAAAT
14038800 ATGATTAAAT
Statistics
Matches: 137, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
120 131 0.96
121 6 0.04
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.50
Consensus pattern (120 bp):
TATATTTAATAATAATTATGTTAAATTATATTTTATACTATCATATATTATAATTTGAGTAAATT
CATATAAGAATATTGAATATTAAGAATTTTATTAAATCATATATTTTAATTAAAA
Found at i:14038771 original size:18 final size:17
Alignment explanation
Indices: 14038743--14038777 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14038733 ATTATTAAGA
*
14038743 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
14038760 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
14038778 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:14039032 original size:16 final size:16
Alignment explanation
Indices: 14039013--14039064 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
14039003 AATTTGCTAT
* *
14039013 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
14039029 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
14039045 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
14039061 TACA
1 TACA
14039065 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:14043462 original size:14 final size:14
Alignment explanation
Indices: 14043445--14043471 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14043435 ACAAATTTGG
14043445 CTATACTAAAATGC
1 CTATACTAAAATGC
14043459 CTATACTAAAATG
1 CTATACTAAAATG
14043472 AGTGTGCTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.19, G:0.07, T:0.30
Consensus pattern (14 bp):
CTATACTAAAATGC
Found at i:14056971 original size:36 final size:36
Alignment explanation
Indices: 14056924--14056996 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
14056914 CACTTTTCCA
14056924 GTAGTCATCTCTGCAGAGTTAACATTTAATCAAGAG
1 GTAGTCATCTCTGCAGAGTTAACATTTAATCAAGAG
14056960 GTAGTCATCTCTGCAGAGTTAACATTTAATCAAGAG
1 GTAGTCATCTCTGCAGAGTTAACATTTAATCAAGAG
14056996 G
1 G
14056997 CTAAATTGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (36 bp):
GTAGTCATCTCTGCAGAGTTAACATTTAATCAAGAG
Found at i:14067797 original size:13 final size:13
Alignment explanation
Indices: 14067779--14067803 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14067769 ATTTTTTAGG
14067779 TCATTTTCATTTT
1 TCATTTTCATTTT
14067792 TCATTTTCATTT
1 TCATTTTCATTT
14067804 AGGAGAAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (13 bp):
TCATTTTCATTTT
Found at i:14067855 original size:6 final size:6
Alignment explanation
Indices: 14067844--14067879 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
14067834 TCCATTTCTC
14067844 CATTTT CATTTT CATTTT CATTTT CATTTT CATTTT
1 CATTTT CATTTT CATTTT CATTTT CATTTT CATTTT
14067880 GGAGAAAACC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.67
Consensus pattern (6 bp):
CATTTT
Found at i:14071257 original size:103 final size:104
Alignment explanation
Indices: 14071078--14071343 Score: 410
Period size: 103 Copynumber: 2.6 Consensus size: 104
14071068 TAACCGTTAT
* * *
14071078 TGGTGGATCTCGCACTTAGCACCACCACTGAATCGGGGAATCATCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
**
14071143 AATCAGCACATAGCAACCCCCTTT-TTATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
14071181 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
14071246 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
* * * * **
14071285 TGGTGGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCAGCGCACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
14071344 TTTATATACA
Statistics
Matches: 150, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
103 86 0.57
104 63 0.42
105 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (104 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
Found at i:14078824 original size:18 final size:18
Alignment explanation
Indices: 14078801--14078835 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
14078791 ATTTAGTAGT
*
14078801 GCTTAAAAAATATTTTTG
1 GCTTAAAAAACATTTTTG
14078819 GCTTAAAAAACATTTTT
1 GCTTAAAAAACATTTTT
14078836 AGAAGAAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.43
Consensus pattern (18 bp):
GCTTAAAAAACATTTTTG
Found at i:14079144 original size:30 final size:30
Alignment explanation
Indices: 14079105--14079161 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
14079095 TTTTATAAAT
14079105 AATTAATATTT-AT-TACTTAAAAATATTTAA
1 AATTAATATTTCATATA-TT-AAAATATTTAA
*
14079135 AATTTATATTTCATATATTAAAATATT
1 AATTAATATTTCATATATTAAAATATT
14079162 AACAATAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
30 18 0.75
31 4 0.17
32 2 0.08
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (30 bp):
AATTAATATTTCATATATTAAAATATTTAA
Found at i:14079487 original size:21 final size:21
Alignment explanation
Indices: 14079463--14079513 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 21
14079453 ATATCCTTAA
*
14079463 TAATATAGAAATAAAACAAAT-
1 TAATATAG-AATAAAAAAAATC
14079484 TAATCATAGAATAAAAAAAATC
1 TAAT-ATAGAATAAAAAAAATC
14079506 TCAATATA
1 T-AATATA
14079514 AAACATTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 15 0.58
22 8 0.31
23 3 0.12
ACGTcount: A:0.63, C:0.08, G:0.04, T:0.25
Consensus pattern (21 bp):
TAATATAGAATAAAAAAAATC
Found at i:14112518 original size:26 final size:27
Alignment explanation
Indices: 14112489--14112549 Score: 115
Period size: 27 Copynumber: 2.3 Consensus size: 27
14112479 AATTTTCTTG
14112489 AAATTTTATCGAG-GGTAAAATCGTCA
1 AAATTTTATCGAGTGGTAAAATCGTCA
14112515 AAATTTTATCGAGTGGTAAAATCGTCA
1 AAATTTTATCGAGTGGTAAAATCGTCA
14112542 AAATTTTA
1 AAATTTTA
14112550 CTAGAGTAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 13 0.38
27 21 0.62
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.34
Consensus pattern (27 bp):
AAATTTTATCGAGTGGTAAAATCGTCA
Found at i:14114038 original size:11 final size:12
Alignment explanation
Indices: 14114013--14114038 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14114003 TGTAATGGAC
14114013 TTTTTAAGGATT
1 TTTTTAAGGATT
14114025 TTTTTAAGGATT
1 TTTTTAAGGATT
14114037 TT
1 TT
14114039 ATATCTAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.15, T:0.62
Consensus pattern (12 bp):
TTTTTAAGGATT
Found at i:14114359 original size:20 final size:22
Alignment explanation
Indices: 14114321--14114360 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
14114311 TTGAGATATC
14114321 AAAGTATGTTAATGCATGATCT
1 AAAGTATGTTAATGCATGATCT
14114343 AAAGTA-GTTAA-GCATGAT
1 AAAGTATGTTAATGCATGAT
14114361 TTATATTATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.39
21 5 0.28
22 6 0.33
ACGTcount: A:0.40, C:0.07, G:0.20, T:0.33
Consensus pattern (22 bp):
AAAGTATGTTAATGCATGATCT
Found at i:14115289 original size:26 final size:26
Alignment explanation
Indices: 14115240--14115289 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
14115230 AATTATCATT
* *
14115240 TTAAACCCTAAATATTAAATTAAACC
1 TTAAACCCCAAATACTAAATTAAACC
14115266 TTAAACCCCAAAT-CTAAATCTAAA
1 TTAAACCCCAAATACTAAAT-TAAA
14115290 TCAAAATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 5 0.24
26 16 0.76
ACGTcount: A:0.50, C:0.22, G:0.00, T:0.28
Consensus pattern (26 bp):
TTAAACCCCAAATACTAAATTAAACC
Found at i:14120171 original size:20 final size:23
Alignment explanation
Indices: 14120141--14120186 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
14120131 TCTTTAAAGG
14120141 AACATCATCATTTAGCTTTGTTT
1 AACATCATCATTTAGCTTTGTTT
14120164 AACATCATCATTTAGCTTTGTTT
1 AACATCATCATTTAGCTTTGTTT
14120187 CACCATGTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.09, T:0.48
Consensus pattern (23 bp):
AACATCATCATTTAGCTTTGTTT
Found at i:14125511 original size:25 final size:26
Alignment explanation
Indices: 14125483--14125531 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
14125473 AGAGGAAAGT
14125483 TTAAAGAACATAAAA-GAAAAAAAAA
1 TTAAAGAACATAAAACGAAAAAAAAA
** *
14125508 TTAAATTACTTAAAACGAAAAAAA
1 TTAAAGAACATAAAACGAAAAAAA
14125532 TATGGGGATC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 12 0.60
26 8 0.40
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.18
Consensus pattern (26 bp):
TTAAAGAACATAAAACGAAAAAAAAA
Found at i:14127636 original size:19 final size:20
Alignment explanation
Indices: 14127594--14127636 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
14127584 GGGTATTTCA
14127594 AAAACTATGAGGGAATACCC
1 AAAACTATGAGGGAATACCC
* *
14127614 AAAATTATGATGGAATA-CC
1 AAAACTATGAGGGAATACCC
14127633 AAAA
1 AAAA
14127637 GTCACGAGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.19
Consensus pattern (20 bp):
AAAACTATGAGGGAATACCC
Found at i:14127713 original size:20 final size:20
Alignment explanation
Indices: 14127669--14127713 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
14127659 AAGAAGTACT
* * *
14127669 AAAAATTATAAGGGAATATA
1 AAAAATTACAACGGAATAAA
14127689 AAAAATTACAACGGAATAAA
1 AAAAATTACAACGGAATAAA
14127709 AAAAA
1 AAAAA
14127714 CTTTTTAGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.67, C:0.04, G:0.11, T:0.18
Consensus pattern (20 bp):
AAAAATTACAACGGAATAAA
Found at i:14127778 original size:19 final size:19
Alignment explanation
Indices: 14127738--14127779 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
14127728 AATGTAATAT
* *
14127738 TTTTTATTTCAAAAATTTA
1 TTTTTATGTCAAAAATTAA
14127757 TTTTTATGTCAAAAGA-TAA
1 TTTTTATGTCAAAA-ATTAA
14127776 TTTT
1 TTTT
14127780 AGAAACATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 19 0.95
20 1 0.05
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.55
Consensus pattern (19 bp):
TTTTTATGTCAAAAATTAA
Found at i:14133563 original size:50 final size:51
Alignment explanation
Indices: 14133502--14133634 Score: 189
Period size: 50 Copynumber: 2.6 Consensus size: 51
14133492 TATCATTCGA
* * *
14133502 TACACGTAGTAGCCTTCACATAGTACTACACACATGATCAAA--CTTTTCGG
1 TACACGTAGTAGCCTGCACATAGTACTACACACATGACCAAAGCCTTCT-GG
* *
14133552 TTCACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAAGCCTTCTGG
1 TACACGTAGTAGCCTGCACATAGTACTACACACATGACCAAAGCCTTCTGG
*
14133603 TACACATAGTAGCCTGCACATAGTACTACACA
1 TACACGTAGTAGCCTGCACATAGTACTACACA
14133635 TGTGACTATT
Statistics
Matches: 74, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
50 38 0.51
51 32 0.43
52 4 0.05
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.25
Consensus pattern (51 bp):
TACACGTAGTAGCCTGCACATAGTACTACACACATGACCAAAGCCTTCTGG
Found at i:14133625 original size:51 final size:49
Alignment explanation
Indices: 14133502--14133688 Score: 189
Period size: 51 Copynumber: 3.7 Consensus size: 49
14133492 TATCATTCGA
* * * * *
14133502 TACACGTAGTAGCCTTCACATAGTACTACACACATGATCAAACTTTTCGG
1 TACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAACTTCT-GG
* *
14133552 TTCACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAAGCCTTCTGG
1 TACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAA--CTTCTGG
* * * *
14133603 TACACATAGTAGCCTGCACATAGTACTACACATGTGACTATTATCTATC-GA
1 TACACATAGTAGCCTGCACATAGTACTACACACGTGACCA--AACT-TCTGG
* *
14133654 TACACATAGTAGCTTGCACTTAGTACTA-ACACGTG
1 TACACATAGTAGCCTGCACATAGTACTACACACGTG
14133689 TTTATAGGCA
Statistics
Matches: 118, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
50 44 0.37
51 67 0.57
52 6 0.05
53 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (49 bp):
TACACATAGTAGCCTGCACATAGTACTACACACGTGACCAAACTTCTGG
Found at i:14138227 original size:24 final size:24
Alignment explanation
Indices: 14138163--14138228 Score: 114
Period size: 24 Copynumber: 2.8 Consensus size: 24
14138153 TATTTCAGCT
* *
14138163 GTTAGGTTGTTAACAACAACAACA
1 GTTAAGTTGTTAACAATAACAACA
14138187 GTTAAGTTGTTAACAATAACAACA
1 GTTAAGTTGTTAACAATAACAACA
14138211 GTTAAGTTGTTAACAATA
1 GTTAAGTTGTTAACAATA
14138229 GTAGTTATTC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (24 bp):
GTTAAGTTGTTAACAATAACAACA
Found at i:14139197 original size:40 final size:40
Alignment explanation
Indices: 14139153--14139235 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
14139143 GTAACGTGAC
14139153 GTTTATCAACCCTTTCCTATGCCTTATATATGTTTATTTA
1 GTTTATCAACCCTTTCCTATGCCTTATATATGTTTATTTA
14139193 GTTTATCAACCCTTTCCTATGCCTTATATATGTTTATTTA
1 GTTTATCAACCCTTTCCTATGCCTTATATATGTTTATTTA
14139233 GTT
1 GTT
14139236 AAATTGTCTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.22, C:0.19, G:0.08, T:0.51
Consensus pattern (40 bp):
GTTTATCAACCCTTTCCTATGCCTTATATATGTTTATTTA
Found at i:14150001 original size:7 final size:7
Alignment explanation
Indices: 14149989--14150137 Score: 65
Period size: 7 Copynumber: 20.9 Consensus size: 7
14149979 ACTAATTAAT
14149989 CTAAACC
1 CTAAACC
14149996 CTAAACCC
1 CTAAA-CC
*
14150004 CTAACCC
1 CTAAACC
*
14150011 CTAACCC
1 CTAAACC
14150018 CTAAACC
1 CTAAACC
*
14150025 TTAAATCC
1 CTAAA-CC
14150033 C--AACC
1 CTAAACC
14150038 CTTAAACC
1 C-TAAACC
*
14150046 AT-AACC
1 CTAAACC
14150052 CATAAACC
1 C-TAAACC
*
14150060 CATAATCC
1 C-TAAACC
*
14150068 ATAAACC
1 CTAAACC
*
14150075 TTAAA--
1 CTAAACC
*
14150080 ATAGTAACTC
1 CTA--AAC-C
*
14150090 CTAAACT
1 CTAAACC
*
14150097 TTAAACC
1 CTAAACC
14150104 CTAAACC
1 CTAAACC
* *
14150111 ATATACC
1 CTAAACC
*
14150118 CTAAATC
1 CTAAACC
*
14150125 ATAAACC
1 CTAAACC
14150132 CTAAAC
1 CTAAAC
14150138 TATAATGATA
Statistics
Matches: 106, Mismatches: 24, Indels: 24
0.69 0.16 0.16
Matches are distributed among these distances:
5 5 0.05
6 6 0.06
7 67 0.63
8 26 0.25
10 2 0.02
ACGTcount: A:0.43, C:0.36, G:0.01, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:14150079 original size:22 final size:22
Alignment explanation
Indices: 14150034--14150079 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
14150024 CTTAAATCCC
* *
14150034 AACCCTTAAACCATAACCCATA
1 AACCCATAAACCATAAACCATA
* *
14150056 AACCCATAATCCATAAACCTTA
1 AACCCATAAACCATAAACCATA
14150078 AA
1 AA
14150080 ATAGTAACTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.48, C:0.33, G:0.00, T:0.20
Consensus pattern (22 bp):
AACCCATAAACCATAAACCATA
Found at i:14150306 original size:14 final size:14
Alignment explanation
Indices: 14150289--14150328 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
14150279 ATAAATCATA
14150289 AACCCTAAACCCCT
1 AACCCTAAACCCCT
* *
14150303 AACCCTTAACCTCT
1 AACCCTAAACCCCT
14150317 AACCCTTAAACC
1 AACCC-TAAACC
14150329 TTAAACCCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
14 17 0.77
15 5 0.23
ACGTcount: A:0.35, C:0.45, G:0.00, T:0.20
Consensus pattern (14 bp):
AACCCTAAACCCCT
Found at i:14150313 original size:21 final size:21
Alignment explanation
Indices: 14150296--14150349 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
14150286 ATAAACCCTA
*
14150296 AACCCCTAACCCTTAACCTCT
1 AACCCCTAAACCTTAACCTCT
* *
14150317 AACCCTTAAACCTTAAACC-CC
1 AACCCCTAAACCTT-AACCTCT
*
14150338 AACCCTTAAACC
1 AACCCCTAAACC
14150350 ATAAACCATA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 25 0.86
22 4 0.14
ACGTcount: A:0.35, C:0.44, G:0.00, T:0.20
Consensus pattern (21 bp):
AACCCCTAAACCTTAACCTCT
Found at i:14150354 original size:21 final size:21
Alignment explanation
Indices: 14150317--14150375 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
14150307 CTTAACCTCT
* *
14150317 AACCCTTAAACCTTAAACCCC
1 AACCCTTAAACCATAAACCAC
*
14150338 AACCCTTAAACCATAAACCAT
1 AACCCTTAAACCATAAACCAC
* *
14150359 AATCGTTAAACCATAAA
1 AACCCTTAAACCATAAA
14150376 GCTCGATCTA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.46, C:0.32, G:0.02, T:0.20
Consensus pattern (21 bp):
AACCCTTAAACCATAAACCAC
Found at i:14150466 original size:39 final size:39
Alignment explanation
Indices: 14150377--14150518 Score: 127
Period size: 39 Copynumber: 3.8 Consensus size: 39
14150367 AACCATAAAG
* * * *
14150377 CTCGATCTATAGTGGCGTTTTTCAAAACGCGTTGCTAATG
1 CTCGATCTATAGCGGCG-TTTTCAAAAAGCGTCGCTAATA
* *
14150417 GTCGACCTATAGCGGCGTTTTCAAAAAGCGTCGCTAATA
1 CTCGATCTATAGCGGCGTTTTCAAAAAGCGTCGCTAATA
* **
14150456 CTCGATCTATAAC-G-G-----AAAAAGCACCGCTAATA
1 CTCGATCTATAGCGGCGTTTTCAAAAAGCGTCGCTAATA
*
14150488 CTCAATCTATAGCGGCGTTTCTCAAAAAGCG
1 CTCGATCTATAGCGGCGTTT-TCAAAAAGCG
14150519 CCACTAATGC
Statistics
Matches: 80, Mismatches: 14, Indels: 16
0.73 0.13 0.15
Matches are distributed among these distances:
32 26 0.32
33 1 0.01
34 1 0.01
37 1 0.01
38 1 0.01
39 29 0.36
40 21 0.26
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (39 bp):
CTCGATCTATAGCGGCGTTTTCAAAAAGCGTCGCTAATA
Found at i:14150616 original size:40 final size:40
Alignment explanation
Indices: 14150572--14150742 Score: 243
Period size: 40 Copynumber: 4.3 Consensus size: 40
14150562 TAAATTTTTT
* * *
14150572 GCGGCGTTTTCCAAAAAGCGTCACTAATGCTCGATCTATA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATA
* * *
14150612 GCGGCGTTTTTAAAAAAGCACCGCTAATGCCCGATCTATA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATA
14150652 GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATA
* * * *
14150692 GTGGCGTTTTTTAAAAAGCGCCGCTAATGCTCAATCTGTA
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATA
*
14150732 GCGGCATTTTT
1 GCGGCGTTTTT
14150743 TATCCAAACG
Statistics
Matches: 116, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 116 1.00
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (40 bp):
GCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATA
Found at i:14151797 original size:29 final size:29
Alignment explanation
Indices: 14151738--14151799 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
14151728 TGTACATTGG
**
14151738 GTTAATATATTAACTTGCTTCCTATGTAT
1 GTTAATATATTAACTTGCTTCCTATACAT
* *
14151767 GTTAATATATTTACTTTCTTCCTATACAT
1 GTTAATATATTAACTTGCTTCCTATACAT
14151796 GTTA
1 GTTA
14151800 TTAAATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.27, C:0.15, G:0.08, T:0.50
Consensus pattern (29 bp):
GTTAATATATTAACTTGCTTCCTATACAT
Found at i:14152069 original size:36 final size:35
Alignment explanation
Indices: 14152018--14152222 Score: 212
Period size: 35 Copynumber: 5.7 Consensus size: 35
14152008 AAAAAATTAC
* *
14152018 CTTAGACGTGTCTATCCCAACCTTTTTAAAGATGT
1 CTTAGACGAGTCTATCCCAACCTTTTTAAAGTTGT
* * * *
14152053 CTTAGACAAGGTCTATCCCAACTTTTTTAAGGTTGC
1 CTTAGACGA-GTCTATCCCAACCTTTTTAAAGTTGT
* * *
14152089 CTTAAACGAGTCTATACCAACCTTTTTTAAAGGTTGC
1 CTTAGACGAGTCTATCCCAACC-TTTTTAAA-GTTGT
* * * * *
14152126 CTTAGACAAGGTTTATCCTAACCTTTTTAAGGTTAT
1 CTTAGACGA-GTCTATCCCAACCTTTTTAAAGTTGT
* *
14152162 CTTACACGAGTTTATCCCAACCTTTTTAAAGTTGT
1 CTTAGACGAGTCTATCCCAACCTTTTTAAAGTTGT
* *
14152197 CTTAGATGAGTCTATCCTAACCTTTT
1 CTTAGACGAGTCTATCCCAACCTTTT
14152223 GTAAGTGTCG
Statistics
Matches: 138, Mismatches: 28, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
35 63 0.46
36 46 0.33
37 19 0.14
38 10 0.07
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.39
Consensus pattern (35 bp):
CTTAGACGAGTCTATCCCAACCTTTTTAAAGTTGT
Found at i:14152153 original size:73 final size:71
Alignment explanation
Indices: 14152014--14152227 Score: 268
Period size: 73 Copynumber: 3.0 Consensus size: 71
14152004 AGAAAAAAAA
* * * * *
14152014 TTACCTTAGACGTGTCTATCCCAACCTTTTTAAAGATGTCTTAGACAAGGTCTATCCCAACTTTT
1 TTACCTTAAACGAGTCTATCCCAACCTTTTTAAAGTTGTCTTAGACAAGGTCTATCCTAACCTTT
14152079 TTAAGG
66 TTAAGG
* * * *
14152085 TTGCCTTAAACGAGTCTATACCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTTTATCCTAACCT
1 TTACCTTAAACGAGTCTATCCCAACC-TTTTTAAA-GTTGTCTTAGACAAGGTCTATCCTAACCT
14152150 TTTTAAGG
64 TTTTAAGG
* * * **
14152158 TTATCTTACACGAGTTTATCCCAACCTTTTTAAAGTTGTCTTAGATGA-GTCTATCCTAACCTTT
1 TTACCTTAAACGAGTCTATCCCAACCTTTTTAAAGTTGTCTTAGACAAGGTCTATCCTAACCTTT
14152222 TGTAAG
66 T-TAAG
14152228 TGTCGGCATT
Statistics
Matches: 122, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
70 16 0.13
71 37 0.30
72 16 0.13
73 53 0.43
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (71 bp):
TTACCTTAAACGAGTCTATCCCAACCTTTTTAAAGTTGTCTTAGACAAGGTCTATCCTAACCTTT
TTAAGG
Found at i:14152246 original size:108 final size:109
Alignment explanation
Indices: 14152030--14152256 Score: 237
Period size: 108 Copynumber: 2.1 Consensus size: 109
14152020 TAGACGTGTC
* * * *
14152030 TATCCCAACCTTTTTAAAGATGTCTTAGACAAGGTCTATCCCAACTTTTTTAAGGTTGCCTTAAA
1 TATCCCAACCTTTTTAAAGATATCTTACACAAGGTCTATCCCAACCTTTTTAAAGTTGCCTTAAA
* * *
14152095 CGAGTCTATACCAACCTTTTTTAAAGGTTGCCTTAGACAAGGTT
66 CGAGTCTATACCAACCTTTTGTAAAGGTGGCATTAGACAAGGTT
* * * * * * *
14152139 TATCCTAACCTTTTTAAGGTTATCTTACACGA-GTTTATCCCAACCTTTTTAAAGTTGTCTTAGA
1 TATCCCAACCTTTTTAAAGATATCTTACACAAGGTCTATCCCAACCTTTTTAAAGTTGCCTTAAA
* *
14152203 TGAGTCTAT-CCTAACCTTTTGT-AAGTGTCGGCATT-GACTAGGTT
66 CGAGTCTATACC-AACCTTTTGTAAAG-GT-GGCATTAGACAAGGTT
* *
14152247 TTTGCCAACC
1 TATCCCAACC
14152257 CTTCAATAAA
Statistics
Matches: 96, Mismatches: 19, Indels: 7
0.79 0.16 0.06
Matches are distributed among these distances:
107 5 0.05
108 61 0.64
109 30 0.31
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (109 bp):
TATCCCAACCTTTTTAAAGATATCTTACACAAGGTCTATCCCAACCTTTTTAAAGTTGCCTTAAA
CGAGTCTATACCAACCTTTTGTAAAGGTGGCATTAGACAAGGTT
Found at i:14156185 original size:208 final size:207
Alignment explanation
Indices: 14155827--14156485 Score: 1003
Period size: 208 Copynumber: 3.2 Consensus size: 207
14155817 CAAACGATGT
* *
14155827 CGTTTTCTTGTTGACTTTTAGACACAATAGTGGCGATACAAAGAAATCGCCGCTGAAGTCAATCA
1 CGTTTTCTTGTTGAGTTTTAGACACAATAGTGGCGATTCAAAGAAATCGCCGCTGAAGTCAATCA
* *
14155892 TTAGCGGCGCTTTAGATGAAGCGCCGCAAAAAGTTTTAAGCATACGCCGTCGTTTTCTGTTGTGC
66 TTAGCGGCGCTTTAGAGGAAGCGTCGCAAAAAGTTTTAAGCATACGCCGTCGTTTTCTGTTGTGC
*
14155957 TTAGGGACATTAGTGGCGCTTCGTGAAAAACGCCGCAAAAGTCAAGCATTATCAGTAATAGTTTT
131 TTAGGGACATTAGTGGCGCTTCGCGAAAAACGCCGCAAAAGTCAAGCATTATC-GTAATAGTTTT
* **
14156022 AGGAAAACAACAA
195 AGGCAAATGACAA
*
14156035 CGTTTTCTTGTTGAGTTTTAGACACAATAGTGGCGTTTCAAAGAAATCGCCGCTGAAGTCAATCA
1 CGTTTTCTTGTTGAGTTTTAGACACAATAGTGGCGATTCAAAGAAATCGCCGCTGAAGTCAATCA
* * * *
14156100 TTAGCGGCGCTTTAGAGGAAGCGTCGCAAAAAGTTTTAAGCATACACCATTGTTTTCTGTTGTGT
66 TTAGCGGCGCTTTAGAGGAAGCGTCGCAAAAAGTTTTAAGCATACGCCGTCGTTTTCTGTTGTGC
*
14156165 TTAGGGACATTAGTGGCGCTTCGCGAAAAACGCCGCAAAAGTCAAGCATTGTCGGTAATAGTTTT
131 TTAGGGACATTAGTGGCGCTTCGCGAAAAACGCCGCAAAAGTCAAGCATTATC-GTAATAGTTTT
14156230 AGGCAAATGACAA
195 AGGCAAATGACAA
** * *
14156243 CGTTTTCTTGTTGAGTTTTAGACACAATAGTGGCGCCTCGAAGAAATAGCCGCTGAAGTCAATCA
1 CGTTTTCTTGTTGAGTTTTAGACACAATAGTGGCGATTCAAAGAAATCGCCGCTGAAGTCAATCA
* * *
14156308 TTAGCGGCGCTTTAGAGGAAGTGTTGCAAAAAGTTTTAAGCATACGCCGTCGTTTTTTGTTGTGC
66 TTAGCGGCGCTTTAGAGGAAGCGTCGCAAAAAGTTTTAAGCATACGCCGTCGTTTTCTGTTGTGC
* * ** *
14156373 TTGGGGACATTAGTGGCGCTTCGCGAAAAATGCCATAAAATTCAAGCATTATCGATAATAGTTTT
131 TTAGGGACATTAGTGGCGCTTCGCGAAAAACGCCGCAAAAGTCAAGCATTATCG-TAATAGTTTT
*
14156438 AGGCAAATGACAT
195 AGGCAAATGACAA
* * * * *
14156451 CGTTTTCTTTTTCAGATTTAGAGACATTAGTGGCG
1 CGTTTTCTTGTTGAGTTTTAGACACAATAGTGGCG
14156486 CATTGCCAAA
Statistics
Matches: 412, Mismatches: 38, Indels: 2
0.91 0.08 0.00
Matches are distributed among these distances:
207 1 0.00
208 411 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.30
Consensus pattern (207 bp):
CGTTTTCTTGTTGAGTTTTAGACACAATAGTGGCGATTCAAAGAAATCGCCGCTGAAGTCAATCA
TTAGCGGCGCTTTAGAGGAAGCGTCGCAAAAAGTTTTAAGCATACGCCGTCGTTTTCTGTTGTGC
TTAGGGACATTAGTGGCGCTTCGCGAAAAACGCCGCAAAAGTCAAGCATTATCGTAATAGTTTTA
GGCAAATGACAA
Found at i:14156926 original size:14 final size:14
Alignment explanation
Indices: 14156904--14156935 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
14156894 TTATATATGT
*
14156904 TTTATGATTTAGGG
1 TTTAGGATTTAGGG
14156918 TTTAGGATTTAGGG
1 TTTAGGATTTAGGG
14156932 TTTA
1 TTTA
14156936 TATATGTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.22, C:0.00, G:0.28, T:0.50
Consensus pattern (14 bp):
TTTAGGATTTAGGG
Found at i:14160020 original size:18 final size:18
Alignment explanation
Indices: 14159992--14160032 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
14159982 TTAAAGTTCA
*
14159992 AATTT-CATAACTTACGT
1 AATTTACATAACTTACAT
14160009 AATTTACATAACTTACAT
1 AATTTACATAACTTACAT
14160027 AATTTA
1 AATTTA
14160033 AATTTATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 5 0.23
18 17 0.77
ACGTcount: A:0.41, C:0.15, G:0.02, T:0.41
Consensus pattern (18 bp):
AATTTACATAACTTACAT
Found at i:14160024 original size:9 final size:9
Alignment explanation
Indices: 14159997--14160061 Score: 51
Period size: 9 Copynumber: 7.0 Consensus size: 9
14159987 GTTCAAATTT
14159997 CATAACTTA
1 CATAACTTA
* *
14160006 CGTAATTTA
1 CATAACTTA
14160015 CATAACTTA
1 CATAACTTA
*
14160024 CATAATTTA
1 CATAACTTA
* *
14160033 AATTTATA-ATA
1 CA--TA-ACTTA
14160044 CATAACTTA
1 CATAACTTA
14160053 CATAACTTA
1 CATAACTTA
14160062 TTAAGATTTA
Statistics
Matches: 43, Mismatches: 9, Indels: 8
0.72 0.15 0.13
Matches are distributed among these distances:
8 1 0.02
9 36 0.84
11 5 0.12
12 1 0.02
ACGTcount: A:0.45, C:0.15, G:0.02, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:14160142 original size:9 final size:9
Alignment explanation
Indices: 14160128--14160666 Score: 294
Period size: 9 Copynumber: 62.9 Consensus size: 9
14160118 AATTGATACA
14160128 TTACATAAC
1 TTACATAAC
14160137 TTACATAAC
1 TTACATAAC
* *
14160146 CTACATACAT
1 TTACATA-AC
14160156 TTACACATAA-
1 TT--ACATAAC
14160166 -TACATAAC
1 TTACATAAC
*
14160174 TTATATAAC
1 TTACATAAC
*
14160183 TTAAATTTATA-
1 TTACA--TA-AC
*
14160194 ATACATAA-
1 TTACATAAC
14160202 TAATACATAAC
1 T--TACATAAC
* *
14160213 CTACATAAA
1 TTACATAAC
* *
14160222 TTAAATAAG
1 TTACATAAC
14160231 TTACATAA-
1 TTACATAAC
* *
14160239 -TACACAAA
1 TTACATAAC
** *
14160247 AAACAAAAAC
1 TTAC-ATAAC
14160257 TTACATAAC
1 TTACATAAC
14160266 TTACATAA-
1 TTACATAAC
*
14160274 -TATCCT-AC
1 TTA-CATAAC
*
14160282 ATA-ATAAC
1 TTACATAAC
*
14160290 TTAGATAA-
1 TTACATAAC
14160298 TAATACATAAC
1 T--TACATAAC
* *
14160309 CTACATAAA
1 TTACATAAC
* *
14160318 TTAAATAAG
1 TTACATAAC
14160327 TTACATAA-
1 TTACATAAC
* *
14160335 -TACACAAAA
1 TTACA-TAAC
* *
14160344 ATA-AAAAC
1 TTACATAAC
14160352 TTACATAAC
1 TTACATAAC
14160361 TTACATAAC
1 TTACATAAC
* *
14160370 CTACTTAA-
1 TTACATAAC
14160378 -TACATAAC
1 TTACATAAC
14160386 TTACATAA-
1 TTACATAAC
*
14160394 -TACACAAC
1 TTACATAAC
14160402 TTACATAAC
1 TTACATAAC
14160411 TTACATAAC
1 TTACATAAC
*
14160420 TTATATAA-
1 TTACATAAC
*
14160428 -GAC--AAC
1 TTACATAAC
*
14160434 TTACATAAT
1 TTACATAAC
*
14160443 TTACTTAA-
1 TTACATAAC
14160451 -TACATAAC
1 TTACATAAC
14160459 TTACATAA-
1 TTACATAAC
14160467 -TACATAAC
1 TTACATAAC
14160475 TTACATAAC
1 TTACATAAC
*
14160484 CTACATAA-
1 TTACATAAC
*
14160492 -GACATAAC
1 TTACATAAC
*
14160500 TTACATAAG
1 TTACATAAC
*
14160509 TTTCATAA-
1 TTACATAAC
*
14160517 -TACACAAC
1 TTACATAAC
14160525 TTACATAAC
1 TTACATAAC
14160534 TTACATAA-
1 TTACATAAC
14160542 -TACATAAC
1 TTACATAAC
*
14160550 TTACATAAT
1 TTACATAAC
*
14160559 TTACTTAA-
1 TTACATAAC
14160567 -TACATAAC
1 TTACATAAC
14160575 TTACATAAC
1 TTACATAAC
14160584 TTACATAA-
1 TTACATAAC
14160592 -TACATAAC
1 TTACATAAC
*
14160600 TTACATAAT
1 TTACATAAC
*
14160609 TTACTTAA-
1 TTACATAAC
14160617 -TACATAAC
1 TTACATAAC
*
14160625 TTACATAAT
1 TTACATAAC
*
14160634 TTACTTAA-
1 TTACATAAC
14160642 -TACATAAC
1 TTACATAAC
14160650 TTACATAAC
1 TTACATAAC
14160659 TTACATAA
1 TTACATAA
14160667 ATATATGATG
Statistics
Matches: 414, Mismatches: 64, Indels: 104
0.71 0.11 0.18
Matches are distributed among these distances:
5 2 0.00
7 91 0.22
8 15 0.04
9 272 0.66
10 22 0.05
11 6 0.01
12 6 0.01
ACGTcount: A:0.49, C:0.18, G:0.01, T:0.32
Consensus pattern (9 bp):
TTACATAAC
Found at i:14160297 original size:12 final size:12
Alignment explanation
Indices: 14160261--14160657 Score: 105
Period size: 12 Copynumber: 32.1 Consensus size: 12
14160251 AAAAACTTAC
14160261 ATAACTTACATA
1 ATAACTTACATA
* *
14160273 ATATCCTACATA
1 ATAACTTACATA
*
14160285 ATAACTTAGATA
1 ATAACTTACATA
14160297 ATAA--TACATA
1 ATAACTTACATA
* *
14160307 ACCT-ACATAAATTAA
1 A--TAACTTACA-T-A
*
14160322 ATAAGTTACATA
1 ATAACTTACATA
** *
14160334 ATACACAAAAATA
1 ATA-ACTTACATA
*
14160347 AAAACTTAC---
1 ATAACTTACATA
14160356 ATAACTTACATA
1 ATAACTTACATA
14160368 ACCT-ACTTA-ATA
1 A--TAACTTACATA
14160380 CATAACTTACATA
1 -ATAACTTACATA
* *
14160393 ATACAC-AACTTA
1 ATA-ACTTACATA
14160405 CATAACTTAC---
1 -ATAACTTACATA
*
14160415 ATAACTTATATAA
1 ATAACTTACAT-A
*
14160428 GACAACTTACATA
1 -ATAACTTACATA
*
14160441 ATTTACTTA-ATA
1 A-TAACTTACATA
14160453 CATAACTTACATA
1 -ATAACTTACATA
* *
14160466 AT-ACATAACTTA
1 ATAAC-TTACATA
*
14160478 CATAACCTACATAAGA
1 -ATAACTTACAT---A
14160494 CATAACTTACATA
1 -ATAACTTACATA
** *
14160507 AGTTTCATA-ATA
1 A-TAACTTACATA
*
14160519 CACAACTTACATA
1 -ATAACTTACATA
* *
14160532 ACTTACATA-ATA
1 A-TAACTTACATA
14160544 CATAACTTACATA
1 -ATAACTTACATA
*
14160557 ATTTACTTA-ATA
1 A-TAACTTACATA
14160569 CATAACTTACATA
1 -ATAACTTACATA
* *
14160582 ACTTACATA-ATA
1 A-TAACTTACATA
14160594 CATAACTTACATA
1 -ATAACTTACATA
*
14160607 ATTTACTTA-ATA
1 A-TAACTTACATA
14160619 CATAACTTACATA
1 -ATAACTTACATA
*
14160632 ATTTACTTA-ATA
1 A-TAACTTACATA
14160644 CATAACTTACATA
1 -ATAACTTACATA
14160657 A
1 A
14160658 CTTACATAAA
Statistics
Matches: 278, Mismatches: 56, Indels: 102
0.64 0.13 0.23
Matches are distributed among these distances:
9 16 0.06
10 6 0.02
11 4 0.01
12 122 0.44
13 99 0.36
14 17 0.06
15 2 0.01
16 12 0.04
ACGTcount: A:0.48, C:0.18, G:0.01, T:0.32
Consensus pattern (12 bp):
ATAACTTACATA
Found at i:14160365 original size:27 final size:26
Alignment explanation
Indices: 14160301--14160361 Score: 63
Period size: 25 Copynumber: 2.3 Consensus size: 26
14160291 TAGATAATAA
* * *
14160301 TACATAACCTACATAAATTAAATAAGT
1 TACATAA-CTACAAAAAATAAATAACT
14160328 TACATAA-TACACAAAAATAAA-AACT
1 TACATAACTACA-AAAAATAAATAACT
14160353 TACATAACT
1 TACATAACT
14160362 TACATAACCT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
25 14 0.48
26 8 0.28
27 7 0.24
ACGTcount: A:0.56, C:0.16, G:0.02, T:0.26
Consensus pattern (26 bp):
TACATAACTACAAAAAATAAATAACT
Found at i:14160379 original size:43 final size:43
Alignment explanation
Indices: 14160128--14160381 Score: 133
Period size: 43 Copynumber: 5.7 Consensus size: 43
14160118 AATTGATACA
* *
14160128 TTACATAACTTACATAACCTACATACATTTACAC-ATAATACATAAC
1 TTACATAACTTACATAACCTACATA-A--TACACAAAAATA-AAAAC
* ** * * *
14160174 TTATATAACTT--A-AA--TTTATAATACATAATAATACATAAC
1 TTACATAACTTACATAACCTACATAATACACAAAAATA-AAAAC
* * * ** *
14160213 CTACATAAATTAAATAAGTTACATAATACACAAAAAACAAAAAC
1 TTACATAACTTACATAACCTACATAATACAC-AAAAATAAAAAC
* *
14160257 TTACATAACTTACATAATATCCTACATAATAACTTAGATAATAATACATAAC
1 TTACATAACTTACAT-A-A-CCTACATAAT-AC--ACA-AA-AATA-AAAAC
* * * **
14160309 CTACATAAATTAAATAAGTTACATAATACACAAAAATAAAAAC
1 TTACATAACTTACATAACCTACATAATACACAAAAATAAAAAC
*
14160352 TTACATAACTTACATAACCTACTTAATACA
1 TTACATAACTTACATAACCTACATAATACA
14160382 TAACTTACAT
Statistics
Matches: 158, Mismatches: 34, Indels: 35
0.70 0.15 0.15
Matches are distributed among these distances:
38 4 0.03
39 20 0.13
40 1 0.01
41 5 0.03
42 2 0.01
43 30 0.19
44 30 0.19
45 8 0.05
46 13 0.08
47 8 0.05
48 4 0.03
49 9 0.06
50 4 0.03
51 4 0.03
52 16 0.10
ACGTcount: A:0.52, C:0.17, G:0.01, T:0.30
Consensus pattern (43 bp):
TTACATAACTTACATAACCTACATAATACACAAAAATAAAAAC
Found at i:14160383 original size:16 final size:16
Alignment explanation
Indices: 14160362--14160657 Score: 121
Period size: 16 Copynumber: 18.0 Consensus size: 16
14160352 TTACATAACT
*
14160362 TACATAACCTACTTAA
1 TACATAACCTACATAA
*
14160378 TACATAACTTACATAA
1 TACATAACCTACATAA
* *
14160394 TACACAACTTACATAA
1 TACATAACCTACATAA
* *
14160410 CTTACATAACTTATATAA
1 --TACATAACCTACATAA
* *
14160428 GAC--AACTTACATAA
1 TACATAACCTACATAA
*
14160442 TTTACTTAA--TACATAA
1 --TACATAACCTACATAA
14160458 CTTACATAA--TACATAA
1 --TACATAACCTACATAA
14160474 CTTACATAACCTACATAA
1 --TACATAACCTACATAA
* *
14160492 GACATAACTTACATAA
1 TACATAACCTACATAA
* *
14160508 GTTTCATAA--TACACAA
1 --TACATAACCTACATAA
*
14160524 CTTACATAACTTACATAA
1 --TACATAACCTACATAA
*
14160542 TACATAACTTACATAA
1 TACATAACCTACATAA
*
14160558 TTTACTTAA--TACATAA
1 --TACATAACCTACATAA
*
14160574 CTTACATAACTTACATAA
1 --TACATAACCTACATAA
*
14160592 TACATAACTTACATAA
1 TACATAACCTACATAA
*
14160608 TTTACTTAA--TACATAA
1 --TACATAACCTACATAA
** *
14160624 CTTACATAATTTACTTAA
1 --TACATAACCTACATAA
*
14160642 TACATAACTTACATAA
1 TACATAACCTACATAA
14160658 CTTACATAAA
Statistics
Matches: 233, Mismatches: 27, Indels: 40
0.78 0.09 0.13
Matches are distributed among these distances:
14 10 0.04
16 164 0.70
18 59 0.25
ACGTcount: A:0.46, C:0.19, G:0.01, T:0.33
Consensus pattern (16 bp):
TACATAACCTACATAA
Found at i:14160385 original size:96 final size:96
Alignment explanation
Indices: 14160195--14160395 Score: 327
Period size: 96 Copynumber: 2.1 Consensus size: 96
14160185 AAATTTATAA
14160195 TACATAATAATACATAACCTACATAAATTAAATAAGTTACATAATACACAAAAAACAAAAACTTA
1 TACATAATAATACATAACCTACATAAATTAAATAAGTTACATAATACACAAAAAACAAAAACTTA
14160260 CATAACTTACATAATATCCTACATAATAACT
66 CATAACTTACATAATATCCTACATAATAACT
* *
14160291 TAGATAATAATACATAACCTACATAAATTAAATAAGTTACATAATACAC-AAAAATAAAAACTTA
1 TACATAATAATACATAACCTACATAAATTAAATAAGTTACATAATACACAAAAAACAAAAACTTA
*
14160355 CATAACTTACATAACCTA-CTTA-ATACATAACT
66 CATAACTTACATAA--TATCCTACATA-ATAACT
14160387 TACATAATA
1 TACATAATA
14160396 CACAACTTAC
Statistics
Matches: 98, Mismatches: 4, Indels: 6
0.91 0.04 0.06
Matches are distributed among these distances:
95 31 0.32
96 65 0.66
97 2 0.02
ACGTcount: A:0.54, C:0.17, G:0.01, T:0.28
Consensus pattern (96 bp):
TACATAATAATACATAACCTACATAAATTAAATAAGTTACATAATACACAAAAAACAAAAACTTA
CATAACTTACATAATATCCTACATAATAACT
Found at i:14160406 original size:50 final size:49
Alignment explanation
Indices: 14160349--14160666 Score: 360
Period size: 50 Copynumber: 6.4 Consensus size: 49
14160339 CAAAAATAAA
* *
14160349 AACTTACATAACTTACATAACCTACTTAA-TACATAACTTACATAATACAC
1 AACTTACATAACTTACATAA--TACATAACTACATAACTTACATAATACAT
* * *
14160399 AACTTACATAACTTACATAACTTATATAA-GAC--AACTTACATAATTTACTT
1 AACTTACATAACTTACATAA--TACATAACTACATAACTTACATAA--TACAT
* *
14160449 AA--TACATAACTTACATAATACATAACTTACATAACCTACATAAGACAT
1 AACTTACATAACTTACATAATACATAAC-TACATAACTTACATAATACAT
* * *
14160497 AACTTACATAAGTTTCATAATACACAACTTACATAACTTACATAATACAT
1 AACTTACATAACTTACATAATACATAAC-TACATAACTTACATAATACAT
* *
14160547 AACTTACATAATTTACTTAATACATAACTTACATAACTTACATAATACAT
1 AACTTACATAACTTACATAATACATAAC-TACATAACTTACATAATACAT
* * * *
14160597 AACTTACATAATTTACTTAATACATAACTTACATAATTTACTTAATACAT
1 AACTTACATAACTTACATAATACATAAC-TACATAACTTACATAATACAT
14160647 AACTTACATAACTTACATAA
1 AACTTACATAACTTACATAA
14160667 ATATATGATG
Statistics
Matches: 236, Mismatches: 24, Indels: 16
0.86 0.09 0.06
Matches are distributed among these distances:
46 6 0.03
48 34 0.14
50 196 0.83
ACGTcount: A:0.46, C:0.19, G:0.01, T:0.33
Consensus pattern (49 bp):
AACTTACATAACTTACATAATACATAACTACATAACTTACATAATACAT
Found at i:14160496 original size:25 final size:25
Alignment explanation
Indices: 14160353--14160666 Score: 164
Period size: 25 Copynumber: 12.6 Consensus size: 25
14160343 AATAAAAACT
* *
14160353 TACATAACTTACATAACCTACTTAA
1 TACATAACTTACATAACTTACATAA
*
14160378 TACATAACTTACATAA--TACACAA
1 TACATAACTTACATAACTTACATAA
*
14160401 CTTACATAACTTACATAACTTATATAA
1 --TACATAACTTACATAACTTACATAA
* * *
14160428 GAC--AACTTACATAATTTACTTAA
1 TACATAACTTACATAACTTACATAA
14160451 TACATAACTTACATAA--TACATAA
1 TACATAACTTACATAACTTACATAA
* *
14160474 CTTACATAACCTACATAA--GACATAA
1 --TACATAACTTACATAACTTACATAA
* * *
14160499 CTTACATAAGTTTCATAA--TACACAA
1 --TACATAACTTACATAACTTACATAA
14160524 CTTACATAACTTACATAA--TACATAA
1 --TACATAACTTACATAACTTACATAA
* *
14160549 CTTACATAATTTACTTAA--TACATAA
1 --TACATAACTTACATAACTTACATAA
14160574 CTTACATAACTTACATAA--TACATAA
1 --TACATAACTTACATAACTTACATAA
* *
14160599 CTTACATAATTTACTTAA--TACATAA
1 --TACATAACTTACATAACTTACATAA
* *
14160624 CTTACATAATTTACTTAA--TACATAA
1 --TACATAACTTACATAACTTACATAA
14160649 CTTACATAACTTACATAA
1 --TACATAACTTACATAA
14160667 ATATATGATG
Statistics
Matches: 253, Mismatches: 28, Indels: 16
0.85 0.09 0.05
Matches are distributed among these distances:
23 30 0.12
25 218 0.86
27 5 0.02
ACGTcount: A:0.46, C:0.19, G:0.01, T:0.33
Consensus pattern (25 bp):
TACATAACTTACATAACTTACATAA
Found at i:14160543 original size:75 final size:75
Alignment explanation
Indices: 14160451--14160666 Score: 351
Period size: 75 Copynumber: 2.9 Consensus size: 75
14160441 ATTTACTTAA
** * * * *
14160451 TACATAACTTACATAATACATAACTTACATAACCTACATAAGACATAACTTACATAAGTTTCATA
1 TACATAACTTACATAATACATAACTTACATAATTTACTTAATACATAACTTACATAACTTACATA
14160516 ATACACAACT
66 ATACACAACT
14160526 TACATAACTTACATAATACATAACTTACATAATTTACTTAATACATAACTTACATAACTTACATA
1 TACATAACTTACATAATACATAACTTACATAATTTACTTAATACATAACTTACATAACTTACATA
*
14160591 ATACATAACT
66 ATACACAACT
* *
14160601 TACATAATTTACTTAATACATAACTTACATAATTTACTTAATACATAACTTACATAACTTACATA
1 TACATAACTTACATAATACATAACTTACATAATTTACTTAATACATAACTTACATAACTTACATA
14160666 A
66 A
14160667 ATATATGATG
Statistics
Matches: 132, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
75 132 1.00
ACGTcount: A:0.46, C:0.19, G:0.01, T:0.34
Consensus pattern (75 bp):
TACATAACTTACATAATACATAACTTACATAATTTACTTAATACATAACTTACATAACTTACATA
ATACACAACT
Found at i:14162979 original size:21 final size:21
Alignment explanation
Indices: 14162935--14162985 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
14162925 CTACAACTTA
*
14162935 AAGCAGAGGCGACAGCGAGGG
1 AAGCAGAGGCGACAGCGAGAG
*
14162956 AAGCAGAGGCTG-CAGTGAGAG
1 AAGCAGAGGC-GACAGCGAGAG
*
14162977 AAGTAGAGG
1 AAGCAGAGG
14162986 TTCAAAAGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 25 0.96
22 1 0.04
ACGTcount: A:0.35, C:0.14, G:0.45, T:0.06
Consensus pattern (21 bp):
AAGCAGAGGCGACAGCGAGAG
Found at i:14163046 original size:87 final size:87
Alignment explanation
Indices: 14162895--14163057 Score: 263
Period size: 87 Copynumber: 1.9 Consensus size: 87
14162885 GACCACAGTT
* * *
14162895 GAGGTTCAAAGGAAATATGAAGAACTCCAGCTACAACTTAAAGCAGAGGCGACAGCGAGGGAAGC
1 GAGGTTCAAAAGAAATATGAAGAACTCCAGCTACAACTTAAAGAAGAGGCGACAGCGAGAGAAGC
*
14162960 AGAGGCTGCAGTGAGAGAAGTA
66 AGACGCTGCAGTGAGAGAAGTA
* * *
14162982 GAGGTTCAAAAGAAATATGAAGAACTCCAGCTACAACTTAAAGAAGATGCGGCATCGAGAGAAGC
1 GAGGTTCAAAAGAAATATGAAGAACTCCAGCTACAACTTAAAGAAGAGGCGACAGCGAGAGAAGC
14163047 AGACGCTGCAG
66 AGACGCTGCAG
14163058 CAAGGGAAGC
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 69 1.00
ACGTcount: A:0.40, C:0.17, G:0.29, T:0.13
Consensus pattern (87 bp):
GAGGTTCAAAAGAAATATGAAGAACTCCAGCTACAACTTAAAGAAGAGGCGACAGCGAGAGAAGC
AGACGCTGCAGTGAGAGAAGTA
Found at i:14163496 original size:43 final size:43
Alignment explanation
Indices: 14163426--14163772 Score: 339
Period size: 43 Copynumber: 8.1 Consensus size: 43
14163416 CAAATAGCAA
* * *
14163426 CGTTTGTGTAAAAAT-GCCGCTATAAGAACATGACCTTTAGTGG
1 CGTTTGTGGAAGAATCGCCGCTA-AAGAACATGACCTTTAGCGG
* *
14163469 CGTTTGCGGAAGAATCGCCGCTAAAGAACATGATCTTTAGCGG
1 CGTTTGTGGAAGAATCGCCGCTAAAGAACATGACCTTTAGCGG
*
14163512 CGTTTGTGGAAG-ATGCGCCGCTAAAGAACATGATCTTTAGCGG
1 CGTTTGTGGAAGAAT-CGCCGCTAAAGAACATGACCTTTAGCGG
* * * *
14163555 CGTTTGTGGAAAAATCGCCGCTGAGGAACATGATCTTTAGCGG
1 CGTTTGTGGAAGAATCGCCGCTAAAGAACATGACCTTTAGCGG
* * * * *
14163598 CGTTTGTGGAACAAGCGCCGCTAAAGATCATGATCTTCAGCGG
1 CGTTTGTGGAAGAATCGCCGCTAAAGAACATGACCTTTAGCGG
* * * *
14163641 CGTTTGTTGAAAAAGT-GCCTCCAAAGAACATGACCTTTAGCGG
1 CGTTTGTGGAAGAA-TCGCCGCTAAAGAACATGACCTTTAGCGG
* * * * *
14163684 TGTTTGTAGGAA-AAGCGCCGCTAAAGACCCTGACCTTTAGTGG
1 CGTTTGT-GGAAGAATCGCCGCTAAAGAACATGACCTTTAGCGG
* * * * *
14163727 CATTTTTTTGTAG---CGCCGCTAAAGAACATGACCTTTAGAGG
1 C-GTTTGTGGAAGAATCGCCGCTAAAGAACATGACCTTTAGCGG
14163768 CGTTT
1 CGTTT
14163773 ATAAAAATAA
Statistics
Matches: 256, Mismatches: 40, Indels: 19
0.81 0.13 0.06
Matches are distributed among these distances:
40 3 0.01
41 26 0.10
42 2 0.01
43 209 0.82
44 16 0.06
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (43 bp):
CGTTTGTGGAAGAATCGCCGCTAAAGAACATGACCTTTAGCGG
Found at i:14163909 original size:22 final size:22
Alignment explanation
Indices: 14163866--14163909 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
14163856 TAGTGGCGCT
* **
14163866 AAAAAGCGCCGCTAAATGCCTG
1 AAAAAACGCCGCTAAAAACCTG
14163888 AAAAAACGCCGCTAAAAACCTG
1 AAAAAACGCCGCTAAAAACCTG
14163910 TTTTGGTGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.43, C:0.27, G:0.18, T:0.11
Consensus pattern (22 bp):
AAAAAACGCCGCTAAAAACCTG
Found at i:14165440 original size:42 final size:41
Alignment explanation
Indices: 14165376--14165460 Score: 107
Period size: 42 Copynumber: 2.0 Consensus size: 41
14165366 TATTCTTACA
* * * *
14165376 TCATGTTGTGGATAAACCACTCATTGTTGTGGATGAACCAC
1 TCATGTTGTAGATAAACCACTCATCGGTGTCGATGAACCAC
* *
14165417 TCATCGTTGTAGATAAACTACTCATCGGTGTCGATGAACTAC
1 TCAT-GTTGTAGATAAACCACTCATCGGTGTCGATGAACCAC
14165459 TC
1 TC
14165461 GTAGTAAAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
41 4 0.11
42 33 0.89
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (41 bp):
TCATGTTGTAGATAAACCACTCATCGGTGTCGATGAACCAC
Found at i:14165442 original size:21 final size:21
Alignment explanation
Indices: 14165376--14165443 Score: 93
Period size: 21 Copynumber: 3.3 Consensus size: 21
14165366 TATTCTTACA
14165376 TCAT-GTTGTGGATAAACCAC
1 TCATCGTTGTGGATAAACCAC
* *
14165396 TCATTGTTGTGGATGAACCAC
1 TCATCGTTGTGGATAAACCAC
* *
14165417 TCATCGTTGTAGATAAACTAC
1 TCATCGTTGTGGATAAACCAC
14165438 TCATCG
1 TCATCG
14165444 GTGTCGATGA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 4 0.10
21 38 0.90
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (21 bp):
TCATCGTTGTGGATAAACCAC
Found at i:14165456 original size:21 final size:21
Alignment explanation
Indices: 14165407--14165460 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
14165397 CATTGTTGTG
* *
14165407 GATGAACCACTCATCGTTGTA
1 GATGAACTACTCATCGGTGTA
* *
14165428 GATAAACTACTCATCGGTGTC
1 GATGAACTACTCATCGGTGTA
14165449 GATGAACTACTC
1 GATGAACTACTC
14165461 GTAGTAAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.28
Consensus pattern (21 bp):
GATGAACTACTCATCGGTGTA
Found at i:14166000 original size:19 final size:20
Alignment explanation
Indices: 14165965--14166003 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
14165955 TGTGTAATAA
14165965 TAATAATAAACATATGTATT
1 TAATAATAAACATATGTATT
14165985 TAATAATAAA-ATATGTATT
1 TAATAATAAACATATGTATT
14166004 GCTTATTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (20 bp):
TAATAATAAACATATGTATT
Found at i:14166176 original size:51 final size:52
Alignment explanation
Indices: 14166073--14166187 Score: 196
Period size: 52 Copynumber: 2.2 Consensus size: 52
14166063 TAAAAGAAAA
*
14166073 GAAAAGAAA-AAGGAATTGAAAAAGAAACAAAGAATAGAACGAAGCAGGGGG
1 GAAAAGAAAGAAGGAATTGAAAAAGAAACAAAGAATAGAACGAAACAGGGGG
*
14166124 GAAAAGAAAGAATGAATTGAAAAAGAAACAAAGAATAGAACGAAACAGGGGG
1 GAAAAGAAAGAAGGAATTGAAAAAGAAACAAAGAATAGAACGAAACAGGGGG
*
14166176 AAAAAGAAAGAA
1 GAAAAGAAAGAA
14166188 AGAAAAAGAG
Statistics
Matches: 60, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
51 9 0.15
52 51 0.85
ACGTcount: A:0.62, C:0.05, G:0.27, T:0.06
Consensus pattern (52 bp):
GAAAAGAAAGAAGGAATTGAAAAAGAAACAAAGAATAGAACGAAACAGGGGG
Found at i:14167193 original size:40 final size:40
Alignment explanation
Indices: 14167069--14167208 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
14167059 GACTTTGAGT
* * *
14167069 CGATGAGACACTGGGTGTCAATTTATTACTTCGGATTAATT
1 CGATGAGACACTGGGTGTCAAATTATTACTTCGAATT-ATC
** * * * * * *
14167110 TAATAAGGCACTAGGTG-CCAA-T-TTACTTCGATTTAGC
1 CGATGAGACACTGGGTGTCAAATTATTACTTCGAATTATC
*
14167147 CTATGAGACACTGGGTGTCAAATTATTACTTCGAATTATC
1 CGATGAGACACTGGGTGTCAAATTATTACTTCGAATTATC
* *
14167187 CGATGAGGCACTGGGTGCCAAA
1 CGATGAGACACTGGGTGTCAAA
14167209 CTGGTGTGTT
Statistics
Matches: 74, Mismatches: 22, Indels: 7
0.72 0.21 0.07
Matches are distributed among these distances:
37 13 0.18
38 13 0.18
39 2 0.03
40 34 0.46
41 12 0.16
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (40 bp):
CGATGAGACACTGGGTGTCAAATTATTACTTCGAATTATC
Found at i:14170451 original size:27 final size:25
Alignment explanation
Indices: 14170375--14170451 Score: 82
Period size: 27 Copynumber: 2.9 Consensus size: 25
14170365 ATAAAAAATA
*
14170375 TAAATTTTTATAAATATATAAAAGCT
1 TAAATTTATATAAATATA-AAAAGCT
*
14170401 TATAATATATATAAATATAAAAAAGCAT
1 TA-AATTTATATAAATAT-AAAAAGC-T
*
14170429 GTAAATTTATAAAAATATAAAAA
1 -TAAATTTATATAAATATAAAAA
14170452 TTTATAAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
26 2 0.05
27 24 0.56
28 15 0.35
29 2 0.05
ACGTcount: A:0.58, C:0.03, G:0.04, T:0.35
Consensus pattern (25 bp):
TAAATTTATATAAATATAAAAAGCT
Found at i:14170452 original size:18 final size:18
Alignment explanation
Indices: 14170368--14170461 Score: 66
Period size: 18 Copynumber: 5.3 Consensus size: 18
14170358 ATATATGATA
**
14170368 AAAAATATAAATTTTTAT
1 AAAAATATAAAAATTTAT
* **
14170386 AAATATATAAAAGCTTAT
1 AAAAATATAAAAATTTAT
* * *
14170404 -AATATATATAAATATA-
1 AAAAATATAAAAATTTAT
* **
14170420 AAAAAGCATGTAAATTTAT
1 AAAAA-TATAAAAATTTAT
14170439 AAAAATATAAAAATTTAT
1 AAAAATATAAAAATTTAT
14170457 AAAAA
1 AAAAA
14170462 AACATAGATT
Statistics
Matches: 58, Mismatches: 15, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
17 15 0.26
18 38 0.66
19 5 0.09
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.34
Consensus pattern (18 bp):
AAAAATATAAAAATTTAT
Found at i:14176269 original size:24 final size:24
Alignment explanation
Indices: 14176241--14176292 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
14176231 TTAGTAAGTC
* *
14176241 AAATAAATTATGCTAATAAATGCT
1 AAATAAATTATACTAATAAATACT
*
14176265 AAATATATTATACTAATAAATACT
1 AAATAAATTATACTAATAAATACT
14176289 AAAT
1 AAAT
14176293 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.54, C:0.08, G:0.04, T:0.35
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Found at i:14176591 original size:18 final size:19
Alignment explanation
Indices: 14176568--14176605 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
14176558 TGATATTAAA
14176568 ATAAA-TATAT-TATTATTT
1 ATAAATTATATAT-TTATTT
14176586 ATAAATTATATATTTATTT
1 ATAAATTATATATTTATTT
14176605 A
1 A
14176606 GAATCATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.28
19 12 0.67
20 1 0.06
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
ATAAATTATATATTTATTT
Found at i:14176602 original size:19 final size:18
Alignment explanation
Indices: 14176568--14176605 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
14176558 TGATATTAAA
14176568 ATAAATATATTATTATTT
1 ATAAATATATTATTATTT
14176586 ATAAAT-TATATATTTATTT
1 ATAAATATAT-TA-TTATTT
14176605 A
1 A
14176606 GAATCATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 3 0.17
18 8 0.44
19 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATAAATATATTATTATTT
Found at i:14180100 original size:14 final size:14
Alignment explanation
Indices: 14180081--14180108 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
14180071 TTTTTCAACT
14180081 GATACTATTCTAAC
1 GATACTATTCTAAC
14180095 GATACTATTCTAAC
1 GATACTATTCTAAC
14180109 ATGTAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (14 bp):
GATACTATTCTAAC
Found at i:14181384 original size:62 final size:62
Alignment explanation
Indices: 14181303--14181470 Score: 291
Period size: 62 Copynumber: 2.7 Consensus size: 62
14181293 CAACATTACA
* *
14181303 ACATTACAACATTAAAACTTGGAACAAACTTTGTAAAATAAATTTTGTAATATAAATTAAAT
1 ACATTACAATATTAAAACTTGGAACAAACTTTGTAATATAAATTTTGTAATATAAATTAAAT
* * *
14181365 ACATTACAATATTAAAACTTGGAAGAAAATTTGTAATATAAATTTTGTTATATAAATTAAAT
1 ACATTACAATATTAAAACTTGGAACAAACTTTGTAATATAAATTTTGTAATATAAATTAAAT
14181427 ACATTACAATATTAAAACTTGGAACAAACTTTGTAATATAAATT
1 ACATTACAATATTAAAACTTGGAACAAACTTTGTAATATAAATT
14181471 AGGTACATTT
Statistics
Matches: 99, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 99 1.00
ACGTcount: A:0.49, C:0.08, G:0.07, T:0.36
Consensus pattern (62 bp):
ACATTACAATATTAAAACTTGGAACAAACTTTGTAATATAAATTTTGTAATATAAATTAAAT
Found at i:14199501 original size:16 final size:16
Alignment explanation
Indices: 14199482--14199512 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14199472 TTTTTTATTT
*
14199482 TTTTAATATTAAATAA
1 TTTTAAAATTAAATAA
14199498 TTTTAAAATTAAATA
1 TTTTAAAATTAAATA
14199513 TCATTAATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TTTTAAAATTAAATAA
Found at i:14201187 original size:24 final size:23
Alignment explanation
Indices: 14201159--14201203 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
14201149 AAAATTTAAA
14201159 TTAGGGTATTAGGTTTTTAATTCT
1 TTAGGGTATTAGG-TTTTAATTCT
*
14201183 TTAGGGTTTTAGGTTTTAATT
1 TTAGGGTATTAGGTTTTAATT
14201204 TTTTTTAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.20, C:0.02, G:0.22, T:0.56
Consensus pattern (23 bp):
TTAGGGTATTAGGTTTTAATTCT
Found at i:14201899 original size:129 final size:129
Alignment explanation
Indices: 14201669--14201903 Score: 425
Period size: 129 Copynumber: 1.8 Consensus size: 129
14201659 AGAACAAAGG
*
14201669 TATTCAAATTTCAATTCCCTTTTTCTTCTCTTAGAACAATTCCATGGAAAATTTTAGATTCAAAT
1 TATTCAAATGTCAATTCCCTTTTTCTTCTCTTAGAACAATTCCATGGAAAATTTTAGATTCAAAT
14201734 CATGTAGGGAAGGAAAGACTCAACAAATAGAGAGCAAGAATGACATAAATGGCATGCAAGATCT
66 CATGTAGGGAAGGAAAGACTCAACAAATAGAGAGCAAGAATGACATAAATGGCATGCAAGATCT
* * *
14201798 TATTCAAATGTCAATTCCTTTTTTCTTCTTTTAGAACAATTCCATGGAAACTTTTAGATTCAAAT
1 TATTCAAATGTCAATTCCCTTTTTCTTCTCTTAGAACAATTCCATGGAAAATTTTAGATTCAAAT
*
14201863 CATGTAGGGAAGGAAAGGCTCAACAAATAGAGAGCAAGAAT
66 CATGTAGGGAAGGAAAGACTCAACAAATAGAGAGCAAGAAT
14201904 AGCATCAATG
Statistics
Matches: 101, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
129 101 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.31
Consensus pattern (129 bp):
TATTCAAATGTCAATTCCCTTTTTCTTCTCTTAGAACAATTCCATGGAAAATTTTAGATTCAAAT
CATGTAGGGAAGGAAAGACTCAACAAATAGAGAGCAAGAATGACATAAATGGCATGCAAGATCT
Found at i:14209809 original size:487 final size:486
Alignment explanation
Indices: 14208787--14210061 Score: 1871
Period size: 487 Copynumber: 2.6 Consensus size: 486
14208777 GATTCGGGTG
* *
14208787 ATTTCTCAAAATCATTCGAAATTAGATTCGGAGATGATCGCAAATATAATACTACCTATGGTGAA
1 ATTTCTCGAAATCATTCAAAATTAGATTCGGAGATGATCGCAAATATAATACTACCTATGGTGAA
* * * *
14208852 AATGAGTCCCAAGATTGCAATATCGGTTTTAATTACAAATATTCGTAGTCAGTTCAATTACACAT
66 AATGAGTCCCAAGATTGCTATATCGGTTTTAATTACAAATATTCGTAGCCAGTTCGATTACACGT
* * * * * *
14208917 CGT-TATACTGCACGGCATGGATCACAAAACATAAAGTATTTGAGAAGATGCATAATGGGTGGGA
131 CGTCTAT-C-GTAAGGCGTGGATCACAAAGCATAAAGCATTGGAGAAGATGCATAATGGGTGGGA
*
14208981 TGCGTCATACAATGATTTGTGGCAGTGGTGTCAGGTACTGGAGAAGTACATTCCAGATTGCGTAA
194 TGCGTCATACAATGATTTGTGGCAGTGGTGTTAGGTACTGGAGAAGTACATTCCAGATTGCGTAA
* * * * *
14209046 ACTTCCACATTGTTAAATCTTAGTCTGGTAACTTCAAGG-AAAAATGTGCAATGCGAGACAACAG
259 ACTTCCACATTGTTAAATCTTAGTCTGATAAGTTCAAGGAAAAAAAGTGCAATGCAAGACAACAA
* *
14209110 ATGTGCATGGAAAATCATGGCTTTTATTTAGAAGAAGATAAGGTTGTGGACCATAAAAAAATTTA
324 ATGTGCATGGAAAATCATGGCTTCTATTAAGAAGAAGATAAGGTTGTGGACCATAAAAAAATTTA
* * *
14209175 CCGCTCTGAATACGTGTGTTGCCGTGGGTACTGTTTCAAGACCGTATTATATTTGGGTGTTGAAT
389 CCGCTCTGAATACGTGTGTTGCCGTGAGTACTATTTCAAGACCGTATTATATTTGGGTATTGAAT
14209240 TCCTAACTTTAACATACTCGTATTGTTGCAAGT
454 TCCTAACTTTAACATACTCGTATTGTTGCAAGT
* * *
14209273 ATTTCTCGAAATCATTCATAATT-GAATTCAGAGATGATCGCAAATATAATAATACCTATGGTGA
1 ATTTCTCGAAATCATTCAAAATTAG-ATTCGGAGATGATCGCAAATATAATACTACCTATGGTGA
* * * * * *
14209337 AAATAAGT-CCAAGGATAGCTATTTCGGTTTAAATTACAAATATTCGTAGCCAATTTGATTACAC
65 AAATGAGTCCCAA-GATTGCTATATCGGTTTTAATTACAAATATTCGTAGCCAGTTCGATTACAC
* *
14209401 GTTGTCGTATCGTAAGGCGTGGATCACAAAGCATAACA-CATTGGAGAAGATACATAATGGGTGG
129 GTCGTC-TATCGTAAGGCGTGGATCACAAAGCATAA-AGCATTGGAGAAGATGCATAATGGGTGG
* * *
14209465 GATACGTCATAAAATGATTTGTGGCAGTGGTGTTAGGTACTGGAGAAGTACGTTCCAGATTGCGT
192 GATGCGTCATACAATGATTTGTGGCAGTGGTGTTAGGTACTGGAGAAGTACATTCCAGATTGCGT
14209530 AAACTTCCACATTGTTAAATCTTAGTCTGATAAGTTCAAGGAAAAAAAGTGCAATGCAAGACAAC
257 AAACTTCCACATTGTTAAATCTTAGTCTGATAAGTTCAAGGAAAAAAAGTGCAATGCAAGACAAC
* *
14209595 AAATGTGCATGGAAAATCATGGCTTCTGTTAAGAAGAAGATAGGGTTGTGGACCATAAAAAAATT
322 AAATGTGCATGGAAAATCATGGCTTCTATTAAGAAGAAGATAAGGTTGTGGACCATAAAAAAATT
* * * *
14209660 TATCGTTCTGAATACGTGTGTTGTCGTGAGTACTATTTCAAGACTGTATTATATTTGGGTATTGA
387 TACCGCTCTGAATACGTGTGTTGCCGTGAGTACTATTTCAAGACCGTATTATATTTGGGTATTGA
*
14209725 ATTCCTAACTTTAACGTACTCGTATTGTTGCAAGT
452 ATTCCTAACTTTAACATACTCGTATTGTTGCAAGT
* * *
14209760 ATTAT-TTGAAATCATTCAAAATTAGATTCGGAAATGATCGCAAATATAATACTACCTATAGTGA
1 ATT-TCTCGAAATCATTCAAAATTAGATTCGGAGATGATCGCAAATATAATACTACCTATGGTGA
* * * * *
14209824 AAATGAGTCCCAAGATTGCTATGTCGATTTTAATGACAAATATTCATAGCCAGTTCGATTGCACG
65 AAATGAGTCCCAAGATTGCTATATCGGTTTTAATTACAAATATTCGTAGCCAGTTCGATTACACG
* * *
14209889 TCGTC-ATACCTCATGGCGTGGATCACAAAGCATAAAGCATTGGAGATGATGCATAATGGGTGGG
130 TCGTCTAT-CGT-AAGGCGTGGATCACAAAGCATAAAGCATTGGAGAAGATGCATAATGGGTGGG
* * * *
14209953 ATGCGTCATACAATAATTTGTGGCAGTGGTGTTAGGTACTGAAGAGGTACATTCCAGATTGCCTA
193 ATGCGTCATACAATGATTTGTGGCAGTGGTGTTAGGTACTGGAGAAGTACATTCCAGATTGCGTA
* *
14210018 AACTTTCACATTTTTAAATCTTAGTCTGATAAGTTCAAGGAAAA
258 AACTTCCACATTGTTAAATCTTAGTCTGATAAGTTCAAGGAAAA
14210062 TCAAGGCTTC
Statistics
Matches: 703, Mismatches: 74, Indels: 23
0.88 0.09 0.03
Matches are distributed among these distances:
485 7 0.01
486 257 0.37
487 430 0.61
488 9 0.01
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (486 bp):
ATTTCTCGAAATCATTCAAAATTAGATTCGGAGATGATCGCAAATATAATACTACCTATGGTGAA
AATGAGTCCCAAGATTGCTATATCGGTTTTAATTACAAATATTCGTAGCCAGTTCGATTACACGT
CGTCTATCGTAAGGCGTGGATCACAAAGCATAAAGCATTGGAGAAGATGCATAATGGGTGGGATG
CGTCATACAATGATTTGTGGCAGTGGTGTTAGGTACTGGAGAAGTACATTCCAGATTGCGTAAAC
TTCCACATTGTTAAATCTTAGTCTGATAAGTTCAAGGAAAAAAAGTGCAATGCAAGACAACAAAT
GTGCATGGAAAATCATGGCTTCTATTAAGAAGAAGATAAGGTTGTGGACCATAAAAAAATTTACC
GCTCTGAATACGTGTGTTGCCGTGAGTACTATTTCAAGACCGTATTATATTTGGGTATTGAATTC
CTAACTTTAACATACTCGTATTGTTGCAAGT
Found at i:14217408 original size:18 final size:18
Alignment explanation
Indices: 14217373--14217411 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
14217363 TTATATAAAT
* **
14217373 AATTATTTAAAATTATTA
1 AATTATGTAAAAAAATTA
14217391 AATTATGTAAAAAAATTA
1 AATTATGTAAAAAAATTA
14217409 AAT
1 AAT
14217412 ATAAGGATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (18 bp):
AATTATGTAAAAAAATTA
Found at i:14218161 original size:25 final size:25
Alignment explanation
Indices: 14218133--14218193 Score: 113
Period size: 25 Copynumber: 2.4 Consensus size: 25
14218123 ATTATATGTT
*
14218133 AAATATTTATTTTTTATTTTTAATC
1 AAATATATATTTTTTATTTTTAATC
14218158 AAATATATATTTTTTATTTTTAATC
1 AAATATATATTTTTTATTTTTAATC
14218183 AAATATATATT
1 AAATATATATT
14218194 AAATATATAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (25 bp):
AAATATATATTTTTTATTTTTAATC
Found at i:14230220 original size:31 final size:31
Alignment explanation
Indices: 14230185--14230389 Score: 250
Period size: 31 Copynumber: 6.6 Consensus size: 31
14230175 GTATATGTTT
*
14230185 TATACATTGCCAAATTTGATTTGTATATAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
*
14230216 TATACATTGCCGAATTTGAATTGTATATAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* * *
14230247 TATACATTGTCGAATTTGAATTGTTTATAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* * * *
14230278 TATACATTGTCAAATTTGATTTGTATATGGT
1 TATACATTGCCGAATTTGATTTGTATATAGA
*
14230309 TATACATTGCCGAATTTGATTTGTATATGGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
** * * * *
14230340 TATACATTGTTGAA-TCGATTTATGTGTAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
*
14230370 TATATATTGCCGAATTTGAT
1 TATACATTGCCGAATTTGAT
14230390 CCGTATATGG
Statistics
Matches: 150, Mismatches: 23, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
30 22 0.15
31 128 0.85
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.43
Consensus pattern (31 bp):
TATACATTGCCGAATTTGATTTGTATATAGA
Found at i:14230324 original size:93 final size:93
Alignment explanation
Indices: 14230185--14230389 Score: 286
Period size: 93 Copynumber: 2.2 Consensus size: 93
14230175 GTATATGTTT
14230185 TATACATTGCCAAATTTGATTTGTATATAGATATACATTGCCGAATTTGAATTGTATATAGATAT
1 TATACATTGCCAAATTTGATTTGTATATAGATATACATTGCCGAATTTGAATTGTATATAGATAT
14230250 ACATTGTCGAATTTGAATTGTTTATAGA
66 ACATTGTCGAATTTGAATTGTTTATAGA
* * * * *
14230278 TATACATTGTCAAATTTGATTTGTATATGGTTATACATTGCCGAATTTGATTTGTATATGGATAT
1 TATACATTGCCAAATTTGATTTGTATATAGATATACATTGCCGAATTTGAATTGTATATAGATAT
* * * * * *
14230343 ACATTGTTGAA-TCGATTTATGTGTAGA
66 ACATTGTCGAATTTGAATTGTTTATAGA
* *
14230370 TATATATTGCCGAATTTGAT
1 TATACATTGCCAAATTTGAT
14230390 CCGTATATGG
Statistics
Matches: 98, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
92 28 0.29
93 70 0.71
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.43
Consensus pattern (93 bp):
TATACATTGCCAAATTTGATTTGTATATAGATATACATTGCCGAATTTGAATTGTATATAGATAT
ACATTGTCGAATTTGAATTGTTTATAGA
Found at i:14230349 original size:62 final size:61
Alignment explanation
Indices: 14230185--14230421 Score: 251
Period size: 62 Copynumber: 3.9 Consensus size: 61
14230175 GTATATGTTT
* * * *
14230185 TATACATTGCCAAATTTGATTTGTATATAGATATACATTGCCGAATTTGAATTGTATATAGA
1 TATACATTGCCGAATTTGATTTGTATATAGATATACATTGTC-AAATTGATTTGTATATAGA
* * * * *
14230247 TATACATTGTCGAATTTGAATTGTTTATAGATATACATTGTCAAATTTGATTTGTATATGGT
1 TATACATTGCCGAATTTGATTTGTATATAGATATACATTGTCAAA-TTGATTTGTATATAGA
* ** * * * *
14230309 TATACATTGCCGAATTTGATTTGTATATGGATATACATTGTTGAATCGATTTATGTGTAGA
1 TATACATTGCCGAATTTGATTTGTATATAGATATACATTGTCAAATTGATTTGTATATAGA
* ** * * *
14230370 TATATATTGCCGAATTTGATCCGTATATGGGTAT-TATTGTCAAATTGATTTG
1 TATACATTGCCGAATTTGATTTGTATATAGATATACATTGTCAAATTGATTTG
14230422 AGCATTGGAT
Statistics
Matches: 144, Mismatches: 30, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
60 13 0.09
61 42 0.29
62 89 0.62
ACGTcount: A:0.31, C:0.08, G:0.17, T:0.43
Consensus pattern (61 bp):
TATACATTGCCGAATTTGATTTGTATATAGATATACATTGTCAAATTGATTTGTATATAGA
Found at i:14230758 original size:43 final size:43
Alignment explanation
Indices: 14230539--14230749 Score: 343
Period size: 43 Copynumber: 4.9 Consensus size: 43
14230529 TTCGAGGTGT
* *
14230539 GATTTCGTGTAAGACCATAGCTGGGCTATTTGCATCAATTTGA
1 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
14230582 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
1 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
* * * *
14230625 GATTTCGTGTAAGACTATAGTTGGGCTATTAGAATCGATTTGA
1 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
14230668 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
1 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
*
14230711 GATTTTC-TGTAAGACCATAGCTGGGCTATTGGTATCGAT
1 GA-TTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGAT
14230750 ACAAGATTTC
Statistics
Matches: 156, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
43 152 0.97
44 4 0.03
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.35
Consensus pattern (43 bp):
GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
Found at i:14234041 original size:12 final size:13
Alignment explanation
Indices: 14234017--14234045 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
14234007 GGGCTATAAC
14234017 TATTACATTTATT
1 TATTACATTTATT
14234030 TATTAC-TTTATT
1 TATTACATTTATT
14234042 TATT
1 TATT
14234046 TATGTATGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.66
Consensus pattern (13 bp):
TATTACATTTATT
Found at i:14241933 original size:31 final size:31
Alignment explanation
Indices: 14241898--14241958 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
14241888 TACACAAAAG
14241898 GAAAGCCTTGACCAAGTGGAATATGTAAGGT
1 GAAAGCCTTGACCAAGTGGAATATGTAAGGT
**
14241929 GAAAGTGTTGACCAAGTGGAATATGTAAGG
1 GAAAGCCTTGACCAAGTGGAATATGTAAGG
14241959 GTCGTAGGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.36, C:0.10, G:0.31, T:0.23
Consensus pattern (31 bp):
GAAAGCCTTGACCAAGTGGAATATGTAAGGT
Found at i:14259339 original size:15 final size:17
Alignment explanation
Indices: 14259309--14259349 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
14259299 TTTTCAATTA
14259309 ATAAAATAAATAGAAT-T
1 ATAAAAT-AATAGAATAT
*
14259326 A-AAAATAATTGAATAT
1 ATAAAATAATAGAATAT
14259342 ATAAAATA
1 ATAAAATA
14259350 CAAAAAGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 7 0.33
16 7 0.33
17 7 0.33
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (17 bp):
ATAAAATAATAGAATAT
Found at i:14259487 original size:22 final size:21
Alignment explanation
Indices: 14259460--14259508 Score: 71
Period size: 22 Copynumber: 2.3 Consensus size: 21
14259450 AAAACGTTTG
14259460 ATAAATACCAAATTAAAAAAA
1 ATAAATACCAAATTAAAAAAA
* *
14259481 ATTAAATACTAAATTTAAAAAA
1 A-TAAATACCAAATTAAAAAAA
14259503 ATAAAT
1 ATAAAT
14259509 TCAAGTACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 6 0.24
22 19 0.76
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (21 bp):
ATAAATACCAAATTAAAAAAA
Found at i:14259527 original size:27 final size:25
Alignment explanation
Indices: 14259474--14259531 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 25
14259464 ATACCAAATT
14259474 AAAAAAAATTAAATACTAAATTTAA
1 AAAAAAAATTAAATACTAAATTTAA
*
14259499 AAAAATAAATTCAAGTACT-AATTTAA
1 AAAAA-AAATT-AAATACTAAATTTAA
14259525 AAAAAAA
1 AAAAAAA
14259532 TGTGTACCTC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
25 7 0.23
26 17 0.57
27 6 0.20
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.26
Consensus pattern (25 bp):
AAAAAAAATTAAATACTAAATTTAA
Found at i:14261510 original size:16 final size:17
Alignment explanation
Indices: 14261479--14261516 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
14261469 GTTTCATAGT
*
14261479 AAATACATGTACGTCTC
1 AAATTCATGTACGTCTC
14261496 AAATTCATG-ACGTCTC
1 AAATTCATGTACGTCTC
14261512 AAATT
1 AAATT
14261517 GACCACAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.32
Consensus pattern (17 bp):
AAATTCATGTACGTCTC
Found at i:14262784 original size:16 final size:16
Alignment explanation
Indices: 14262763--14262794 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
14262753 TAAAGATATA
14262763 TACGTCTCAAATTCAT
1 TACGTCTCAAATTCAT
14262779 TACGTCTCAAATTCAT
1 TACGTCTCAAATTCAT
14262795 CACAATAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.38
Consensus pattern (16 bp):
TACGTCTCAAATTCAT
Found at i:14263613 original size:613 final size:613
Alignment explanation
Indices: 14262443--14277640 Score: 9487
Period size: 613 Copynumber: 24.0 Consensus size: 613
14262433 CTTCACTTCT
* * * * * *
14262443 CCTTTAAGCTCCCTACTTTCTCCCTT-AACCTCCCATCATCATATTTCTTATCCTTTTCATTGTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAA-CTCTCATCATCATATTTCTCATCCTTTTCATTCTT
* * ** * * *
14262507 TACTTGTTTTCGACTCTAAAATGTTTGGAATAAAAACGATTGCATGGTTAGCCCTTTTTATATCT
65 TACTTATTTTCGACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAACC
* * * * * *
14262572 GCTTATATAGT-GATT-TTGTACCTTCTCGCACATTCTGCTTTAGGAGAAAAATTGTTTAAAGTC
130 GCTTATACAGTCGATTCTT-TACCTTTTTGCACATTCTGATCTAGGAGAAAAGTTGTTTAAAGTC
* * *
14262635 ATTATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTGTCATCTCTT-
194 TTTATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCT-TTG
* * * *
14262699 GTTATTTGTTCCCTGCTAATGTTTACACGTTTTTGAGAAAATATGGTATTATAGTAAAGATATAT
258 GTTATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGT
* * * *
14262764 ACGTCTCAAATTCATTACGTCTCAAATTCATCACAATAACCTACAATGTCACCTCCAAAAAAGTC
323 ACGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTC
* * *
14262829 TCTTATC-AGAAAAATTGGATCCAAATACTATAATAGTACGATCAAATATGGTGATTAGTAATAT
388 TCTTATCGA-AAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATAT
* * *
14262893 AAAACCATAACAACAGTTGGCATTTTAAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCACT
452 AAAACCATAACAACAGTTAGCATTTTGAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACT
* * * * **
14262958 AATAAAAATTTTCTTTTTTATTTAAAATAAGACAAAATCATAAAAATCTGAAAATTACACCTATA
517 AATATAATTTTTCCTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTACG
14263023 AAAATTACACAAAAATCACAAGACTGCTTTCAG
582 AAAATTACACAAAAATCACAAGACTGCTTT-AG
* * * *
14263056 CCTTAAAGCTCCCTCCATTATTCCTTCAACTCTCATCATCATATTTCTCACCCTTTTCA-TCTTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTC-TT
* *
14263120 TACTTA-TTTCTGACTCTAAAAAGTTTGGAATTGAAACTCTTGCATGGTCAGCCCTTTTTATAAC
65 TACTTATTTTC-GACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAAC
* * *
14263184 CGTTTATACA-TCAATTCTTTACCTTTTTGCACATTCTGATCTAAGAGAAAAGTTGTTTAAAGTC
129 CGCTTATACAGTCGATTCTTTACCTTTTTGCACATTCTGATCTAGGAGAAAAGTTGTTTAAAGTC
*
14263248 TTTATGAGTCCATGGTATTGTGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTGG
194 TTTATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTGG
* ** * *
14263313 TTATTTGTTCCCAGCTAATGTTTACAATTTTTTGGTGAAATATGGTATTATAGTAATGACATGTA
259 TTATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGTA
* * * * *
14263378 CGTCTCAAATTCATTACATCTCAAATTGATCACAATAACCTACAACGCCACCTTCAAAAAAGTCT
324 CGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCT
* * * *
14263443 CTTATCGGAAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATCAGTAATATAA
389 CTTATCGAAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAA
* *
14263508 AACCATAACAACAGTTAGCATTTTAAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCACTAA
454 AACCATAACAACAGTTAGCATTTTGAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACTAA
*
14263573 TATAATTTTTCCTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTATGAA
519 TATAATTTTTCCTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTACGAA
* * *
14263638 AATTACA-AAAAATCACATGATTGCCTTTAA
584 AATTACACAAAAATCACAAGACTG-CTTTAG
* * * * *
14263668 CCTTCAAGCTCCCTTCTTTTTTCCTTCAACTCTCATCATCATATTTCCCATCCTTCTCATTGTTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTCTTT
* * * * *
14263733 ACTTCTTTTAGACTCTAAAATGTTTGGAATAGAAGCTTTTGCATGGTCAGACCTTTTTATAACCG
66 ACTTATTTTCGACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAACCG
* * *
14263798 CTTATACAGT-GATTC-TCACACTTTTTGCACATTCTGATTTAGGAGAAAAGCTT-TTTAAAATC
131 CTTATACAGTCGATTCTTTAC-CTTTTTGCACATTCTGATCTAGGAGAAAAG-TTGTTTAAAGTC
* * * * * * *
14263860 ATTATGACTTCATGGTTTTACGGTCCTATTATGTACCCTATTTGGCAGTTGATT-TCCGCTTTGG
194 TTTATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTGG
* * * * *
14263924 -TATTTTGTTCCCTGCTAATATTTACACTTTTTTTGAGAAATATGGTATTATAGTAAAGACTTGT
259 TTA-TTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGT
* *
14263988 ACGTCTCAAATTCATTACATCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAATGTC
323 ACGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTC
* * * * *
14264053 GCTTATTGAAAAAAATTGAATCGAAATACTATAATAATACGAGCAAATATGATAATTAGTAATAT
388 TCTTATCG-AAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATAT
* * * * * * * * *
14264118 AAAACGATAACAACAATTAGAATTTTTAATATAAAAAATAGTTTTATTCTAGTTTCAGTCCCACT
452 AAAACCATAACAACAGTTAGCATTTTGAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACT
* * * *
14264183 AATATAAATTTT-CTTTTTTTTCTATAATAAGACAAAATCACAAGAATCTGAAAATTACACCTAC
517 AATATAATTTTTCCTTTTTATT-TAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTAC
* *
14264247 GAAAATTACACAAAAATCATAAGACTACCTTTAG
581 GAAAATTACACAAAAATCACAAGACT-GCTTTAG
* * * * * * * * *
14264281 TCTTCACGTTCCCTCATTTCTTCTTTCAAC-CTTCA-AACTCCCTCATTTCTTCACTTCTCCTTC
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTC-TCATCA-T-CAT-ATTTC-TCA-TCCT-TTTC
* * ** * ** * **
14264344 AAGCTCCCTACTTTCTCCCTTAACCTTTC-ATCATCATATTTCTTATCCTTT-TCATTGTTTACT
59 -A--T---T-C-TT-T-ACTT-A-TTTTCGA-C-TC-TA----AAAT-GTTTGGAATAG-AAAC-
* * * * **** * * * * * ** * * *
14264407 TATTTTCGACT-CTAAAAAGTTTGGAATAGAAACTCTTACATGGTCAGGCTTTTTTATAACCGCT
102 T-CTTGC-A-TGGTCAGCCCTTT---TTATAACCGCTTATACAGTC--G-ATTCTT-T-ACC-TT
* ** * * * * ** * *** *
14264471 TATAAAGCGATTCTCTACCGTCTCGCACATTCTACTTCAAGGGAAAAGTTGTTTAAAGTCTTTAT
155 TTTGCA-C-ATTCT-GA---TCTAGGAGA--AAAGTT---GTTTAAA---GTCT----T---TAT
* * * * *
14264536 GAGTCCATGGTATTATGGTCCTATTCTATTCCCTATTTGGCAGTTGATTCTCCACTCTAGTTATT
199 GAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTGGTTATT
* * * * * *
14264601 TGTTCCCTTG-TAATGTTTACACGTTCTTAGGGAAATATTGTCTTATAATAAAGACATGTACTTC
264 TGTTCCC-TGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGTACGTC
* * *
14264665 TCAAATTCATTACGTCTCAAATTGGTCACAATAACTTGCAATGCCACCTCTAACAAAGTCTCTTA
328 TCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCTCTTA
* * * *
14264730 TCGAAAAAGTTGAATCCAAATACTATAATAATA-TAGGCAAATATGGTCAGTAGTAATATAAAAC
393 TCGAAAAAATTGAATCCAAATACTATAATAATACGA-GCAAATATGGTGATTAGTAATATAAAAC
* * *
14264794 CAAAAAAAACAGTTAGCATTTTGAATA-AAAAAACGGTTATATTGTGGTTTTAG-CCCTACTAAT
457 C-ATAACAACAGTTAGCATTTTGAATATAAAAAATGGTTATATTGTGGTTTTAGTCCC-ACTAAT
* * * * *
14264857 ATTATTTTTCTTTTTTATTTAAAATAAGATATATTCATAAGAATCTGAAAATTACACCTACGAAA
520 ATAATTTTTCCTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTACGAAA
* * * * * * *
14264922 TTTAAACAAATATGACAAGGCTACCTATAG
585 ATTACACAAAAATCACAAGACT-GCTTTAG
* * * * *
14264952 CCTTCAAGTTCCCTCCTTTCTTCCTTCAACTCACATCATCATATATCTCATCTTTTTCATTTTTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCA--TTCT
* * * * * * *
14265017 TTACTTATTTTCAACTCTAAAATTTTTTGAAAAAAAACTCTTGCATTGTCAGTCCTTTTTATAAC
64 TTACTTATTTTCGACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAAC
* * * * * *
14265082 CGCTTATACAG-CGATTCTCTACCTTCTCGTACATTCTGATATAGGAGAAAAGCTGTTTAAAGTC
129 CGCTTATACAGTCGATTCTTTACCTTTTTGCACATTCTGATCTAGGAGAAAAGTTGTTTAAAGTC
* * * *
14265146 TTTATGAGTCCATGGTATTATAGTCCTTTTATGTTCCCTATTTGGTAGTTGATTCT-C-CATTGG
194 TTTATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTGG
* * *
14265209 TTATTTGTTCCTTGCTAATGTTTATACGTTTTTGGAGAAATATGGTATTATAGTAAAGACATGTA
259 TTATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGTA
* * *
14265274 CGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGTAATGCCACTTCCAACAAACTCT
324 CGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCT
** * * *
14265339 CTTATCGAAAAAATTGAATATAAATACTATAAGAATACGAGCAAATA---TGATTATTAGTATAA
389 CTTATCGAAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAA
* * *
14265401 AACCATAACAAC-GATTACCATTTTCAATATAAAAAATGGTTAGATTGTGGTTTTAGTCCCACTA
454 AACCATAACAACAG-TTAGCATTTTGAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACTA
* * * *
14265465 ATATAA-------TTTTT-TTTAGAATAACACAAAATGACAAGAATCTG-AAATTACACCTAC-A
518 ATATAATTTTTCCTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTACGA
*
14265520 CAAATTACACAAAAATCGCAAGACTGCCTTTAG
583 -AAATTACACAAAAATCACAAGACTG-CTTTAG
* * *
14265553 CCTTCAAGCTCCTTCCTTTCTTCTTTCATCAT-TCAT-ACTCCATCATTTCTTCA-CTCTTCCTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAAC-TCTCATCA-T-CAT-ATTTC-TCATC-CTT--TT
* *** * * * **** * * *
14265615 CAAGCTCCCAACTTTATTCCTTCAACTCTCATCATCAAAT-TTCT-CACCCTTTTCATTGTTTAC
58 C-A-TTCTTTAC-TTATT--TTCGA--CTC-T-A--AAATGTT-TGGA--ATAGAAACT-CTTGC
** * * * ** ** * *
14265678 TTATTTTC-GACTCTAAAATGTTTGGCATAGAAACTCTTCCATGGTTAG-CCCTTTTTATAATCG
108 --ATGGTCAG-CCCT----T-TTT---AT--AACCGCTT--AT--ACAGTCGATTCTT-T-A-CC
* * * ***
14265741 TTTATAT-CACGATTCTGTACCTTCTCGCACAGTCTGCTTTAGGAGAAAAGTTGTTTAAAGTCTT
153 TTT-T-TGCAC-ATTCTG-A---TCTAGGAGA-AAAG--TT------------GTTTAAAGTCTT
* * *
14265805 TTTGATTCCATGGTATTATGGTCCTATTATGTTCCCTAGTTGGCAGTTGATTCTCCTCTTTGGTT
196 TATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTGGTT
* * * * *
14265870 ATTTGTTCCCAGCTAATGTTCACATGTTTCTAGGGAAATATGGTATTATAGTAAAGACATGTACG
261 ATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGTACG
** * * *
14265935 TCTCAAATTCATTAAATCTCAAATTGATCACAATAACCTACAATGCCACCTTCAAAAAAGTCTCT
326 TCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCTCT
* * * *
14266000 TATC-AGAAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATCAATAATATAAA
391 TATCGA-AAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAA
* * **
14266064 ACCATAACAACAGTTAGCATTTTAAATATAAAAAATGCTTATATTGTCATTTTAGTCCCACTAAT
455 ACCATAACAACAGTTAGCATTTTGAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACTAAT
* * *
14266129 ATAATTTTTCTTTTTTTATTTAAAATAAGATAAAATCATAAGAATCTGAAAATTACACCTATGAA
520 ATAATTTTTC-CTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTACGAA
* * *
14266194 AATTATA-AAAAATCACATGACTGCCTTTAA
584 AATTACACAAAAATCACAAGACTG-CTTTAG
* * * * * *
14266224 CCTTCAAGCTCCCTTCTTTTTTCCTTCTACTCTAATCATCATATTTCTCATCCTTCTCATTGTTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTCTTT
* * * **
14266289 ACTTCTTTTAGACTCTAAAATGTTTGGAATA-AAAGCTTTTGCATGGTCAAACCTTTTTATAACC
66 ACTTATTTTCGACTCTAAAATGTTTGGAATAGAAA-CTCTTGCATGGTCAGCCCTTTTTATAACC
* * * *
14266353 GCTTATACAGT-GATTC-TCACACTTCTTGCACATTCTGATTTAGGAGAAATGCTT-TTTAAAGT
130 GCTTATACAGTCGATTCTTTAC-CTTTTTGCACATTCTGATCTAGGAGAAAAG-TTGTTTAAAGT
* * * * * * *
14266415 CATTATGACTTCATGGTTTTACGGTCCTATTATGTACCCTATTTGGCAGTTGATT-TCCGCTTTG
193 CTTTATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTG
* * *
14266479 GTTATTTGTTCTCTGCTAATATTTACACGTTTTTGGAGAAATATGGTATTATAGTAAAGACATGT
258 GTTATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGT
* * *
14266544 ACGTCTCAAATTCATTACATCTCAAATTGATCACAATAACCTACAATGCCACCTCCAACAATGTC
323 ACGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTC
* * * *
14266609 TCTTATTGAAAAAAATTGAATCAAAATACTATAATAATACGAGCAAATATGATAATTAGTAATAT
388 TCTTATCG-AAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATAT
* * * * * * * * *
14266674 AAAACAATAACAACAATTAGAATTTTTAATATAAAAAATAGTTTTATTCTAGTTTCAGTCCCACT
452 AAAACCATAACAACAGTTAGCATTTTGAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACT
* * * *
14266739 AATATAAATTTT-CTTTTTTTTTATAATAAGACAAAATCACAAGAATCTGAAAATTACACCTACG
517 AATATAATTTTTCCTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTACG
* *
14266803 AAATTTACAGAAAAATCACAAGACTGCTTTTAG
582 AAAATTACACAAAAATCACAAGACTGC-TTTAG
* * * * * * * * *
14266836 TCTTCACGTTCCCTCATTTCTTCTTTCAAC-CTTCA-AACTCCCTCCTTTCTTCACTCCTCCTTC
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTC-TCATCA-T-CAT-ATTTC-TCA-TCCT-TTTC
* ** ** * * * **** * *
14266899 AAGCTCCCTACTT-TCTCCTTTAACCTCT--CATCGTCCT--ATTTCTTA-TCCTTTTCAATGTT
59 -A-TTCTTTACTTAT-T--TTCGA-CTCTAAAAT-GT-TTGGAATAGAAACT-C-TTGC-ATGGT
* * ** * * ** ** * * *
14266958 TA--CTTATTTTCGACTCTAAAATGTTTGGAATAGAAACTCTTACATGGTCAGCCTTTTT-TATA
113 CAGCCCT-TTTT--A---T-AACCGCTT---ATACAGTCGATT-C-T--TTA-CCTTTTTGCACA
* * * ** * *** * * * * *** *
14267020 -ACCGCT-TATAAAGCGATTCTCTACCGTCTCGCACATTCTGCTTCAGGAGAAAACTTGT-TTA-
163 TTCTGATCTA-GGAG-AAAAGT-T---GT-T--TAAAGTCT--TT-ATGAGTCCA-TGGTATTAT
* * * *
14267081 GAGT-CT-TTATGAGTCCATGGTATTATGGTCCTATTCTGTTCCCTATTTAGCAGTTGGTTCTCC
215 G-GTCCTATTATG-TTCC---CTATT-TGG--C-A----GTT-G--A-TT--C------TCCT--
** * * *
14267144 ACCCTGGTTATTTGTTCCCTTG-TAATGTTTACACGTTTTTGGGGAAATATTGTCTTATAATAAA
253 -CTTTGGTTATTTGTTCCC-TGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAA
* * *
14267208 GACATGTACTTCTCAAATTCATTACGTCTCAAACTGGTCACAATAACCTGCAATGCCACCTCCAA
316 GACATGTACGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAA
* *
14267273 CAAAGTCTCTTATCGAAAAAGTTGAATCCAAATACTATAATAATAC-AGGCAAA-ATGGTCATTA
381 CAAAGTCTCTTATCGAAAAAATTGAATCCAAATACTATAATAATACGA-GCAAATATGGTGATTA
* * * *
14267336 GTAATATAAAACCAAAAAAACAGTTAGCATTTTGAATAGAAAAAACGGTTATATTGTGGTTTTAG
445 GTAATATAAAACCATAACAACAGTTAGCATTTTGAATATAAAAAATGGTTATATTGTGGTTTTAG
* * * * *
14267401 CCCCACTAATATTATTTTTCTTTTTTTATTTAAAATAAGATAAATTCATAAGAATCTGAAAATTA
510 TCCCACTAATATAATTTTTC-CTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTA
* * * * * *
14267466 CACCTACGAAATTTAAACAAACATGACAAGGCTACTTATAG
574 CACCTACGAAAATTACACAAAAATCACAAGACTGCTT-TAG
** * * * * *
14267507 CCTTCAAATTCACTCCTTTCTTCCTTCAACTCACATAATCATATATCTCATCTTTTTCATTCTTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTCTTT
* * * ** *
14267572 ACTTATTTTCGACTCTAAAATGTTTTGAATACAAACTCTTGCGTTCTCAG-TCTTTTTATAACCG
66 ACTTATTTTCGACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAACCG
* * ** *
14267636 CTTATACAGT-GATTCTCTACCTTCTCACACATTCTGATAC-AGGAGAAAAGCTGTTTAAAGTCT
131 CTTATACAGTCGATTCTTTACCTTTTTGCACATTCTGAT-CTAGGAGAAAAGTTGTTTAAAGTCT
** * * *
14267699 TTATGAGTCCATGGTATTATAATCCTTTTATGTTCCCTACTTGGTAGTTGATTCTCC-C-TTGGT
195 TTATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTGGT
* * * * *
14267762 TTTTTGTTCCTTGCTAATGTTTACACGTTTTTAGAGAAATATGGTATTATAGTAGAGACATGTAC
260 TATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGTAC
* * * *
14267827 GTCTCGAATTCATTTCGTCTCAAATTGATCACAATAACCTGTAATGCCACCTCCAACAAACTCTC
325 GTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCTC
** * * *
14267892 TTATCGAAAAAATTGAATATAAATACTATAAGAATACGAG-AAA-AT-ATGATTGGTAATATAAA
390 TTATCGAAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAA
* *
14267954 ACCATAACAAC-GATTACCATTTT-AGATATAAAAAATGGTTAGATTGTGGTTTTAGTCCCACTA
455 ACCATAACAACAG-TTAGCATTTTGA-ATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACTA
* * * *
14268017 ATATAA--------TTTT-TTTAGAATAAGACAAAATGACAAGAATCTGAAAATTACACCTA-TA
518 ATATAATTTTTCCTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTACGA
14268072 CAAATTACACAAAAATCACAAGACTGGCTTTAG
583 -AAATTACACAAAAATCACAAGACT-GCTTTAG
* * * * *
14268105 CCTTTAAGCTCCCTCATTTCTTCTTTCATC-CTTCAT-ACTCCCTCATTTCTTCA-CTCTTCCTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTC-TCATCA-T-CAT-ATTTC-TCATC-CTT--TT
* *** * * * **** * * *
14268167 CAAGCTCCCAACTTTATTCCTTCAACTCTCATCATCAAAT-TTCT-CACCCTTTTCATTGTTTAC
58 C-A-TTCTTTAC-TTATT--TTCGA--CTC-T-A--AAATGTT-TGGA--ATAGAAACT-CTTGC
** * * * ** ** *
14268230 TTATTTTC-GACTCTAAAATGTTTGGCATAGAAACTCTTCCATGGTTAG-CCCTTTTTATAACCG
108 --ATGGTCAG-CCCT----T-TTT---AT--AACCGCTT--AT--ACAGTCGATTCTT-T-A-C-
* * * * * * ***
14268293 CTTATAT-AACGATTTTGTACCTTCTCGAATAGTCTGCTTTAGGAGAAAAGTTGTTTAAAGTCTT
152 CTT-TTTGCAC-ATTCTG-A---TCTAGGAGA-AAAG--TT------------GTTTAAAGTCTT
14268357 TATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTGGTT
196 TATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTGGTT
* ** *
14268422 ATTTGTTTCCTGCTAATGTTTACATATTTCTGGGGAAATATGGTATTATAGT-AAGACATGTACG
261 ATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGTACG
* * * * * * *
14268486 TCACAAATTCATTACATCTTAAATTGATCACAATAACCTACAATGTCACCTCCAAAAAAATCTCC
326 TCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCT-C
* * * * *
14268551 TT-TCGAAAAAATTGGATCCAAATACTTTAATAATACGATCAAGTATGGTGATTACTAATATAAA
390 TTATCGAAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAA
*
14268615 ACCATAACAACAGTTAGCATTTTGAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCACTAAT
455 ACCATAACAACAGTTAGCATTTTGAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACTAAT
* * * * * *
14268680 AGAATTTTTCTTTTTTTATTTAAAAGAAGACAAAATCATAAGAATCTGAAAAGTACCCCTATGAA
520 ATAATTTTTC-CTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTACGAA
* * * *
14268745 AATTACACAAAAATCACATGACTACCTTAAA
584 AATTACACAAAAATCACAAGACT-GCTTTAG
* * *
14268776 CCTTTAAGCTCCCTCCTTTTTTCCCTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGC-T
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATT-CTT
* * * * * *
14268840 TAATTATTTTAGACTCTAAAATGTTTGGAATAGAAACTTTTGCATGGTCAACCCTTTCTATAACT
65 TACTTATTTTCGACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAACC
* * * * *
14268905 GCTTATACAGT-GATTCTCTACCTTTTTGTACATTTTGATTTAGGAGAAAAGCTT-CTTAAAGTC
130 GCTTATACAGTCGATTCTTTACCTTTTTGCACATTCTGATCTAGGAGAAAAG-TTGTTTAAAGTC
* * * * *
14268968 ATTACGAGTCCATGGTTTTATGGTCCTATTATGTACCCTATTTGGCAGTTGATTCTTCTCTTTGG
194 TTTATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTGG
* ** * * * *
14269033 TTATTT-TTTCCTATTAATATTCACACGTTTTTAGAGAAATATGGTATTATAGTAAAGACA--T-
259 TTATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGTA
* * *
14269094 -G------------TACGTCTCAAATTGATCACCATAACATGCAATGCCACCTCCAACAATGTCT
324 CGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCT
** * * * * *
14269146 CTTATAAAAAAAATTGATTCCAAATACTATAATAATACAAGAAAATATGATAATTAGTAATATAA
389 CTTATCGAAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAA
* * * * * * * *
14269211 AACCATAACAATAATTAGAATTTTTAATATAAAAAATAGTTTTATTGTGGTTTCAGTCCTACTAA
454 AACCATAACAACAGTTAGCATTTTGAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACTAA
* * *
14269276 TATAAATTTT-CTTTTT-TTTTAAATAAGACAAAATCACAAGAATCTGAAAATTACACCTACGAA
519 TATAATTTTTCCTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTACGAA
14269339 AATTACACAAAAATCACAAGACTGACTTTAG
584 AATTACACAAAAATCACAAGACTG-CTTTAG
** *
14269370 TCTTCATGTTCCCTCATTTCTTCACTCCTCCTTCAAGCTCCCTACTTTCTCCTTTAACCTCTCAT
1 -C--C----T---TCA-AGC-T--C-CCTCC-T-----T---T-C--T-TCCTTCAA-CTCTCAT
* * * * *
14269435 CGTCCTATTTCTTATCCTTTTCAATGTTTACTTATTTTCGACTCTAAAATGTTTGGAATAGAAAC
37 CATCATATTTCTCATCCTTTTCATTCTTTACTTATTTTCGACTCTAAAATGTTTGGAATAGAAAC
* * * * * * *
14269500 TCTTACATGGTCAGCCTTTTTTATAACCGCTTATAAAG-CGATTCTCTACCGTCTCGCACATTCT
102 TCTTGCATGGTCAGCCCTTTTTATAACCGCTTATACAGTCGATTCTTTACCTTTTTGCACATTCT
* * * *
14269564 GCT-TCAGGAGAAAACTTGTTTAGAGTCTTTATGAGTCCATGGTATTATGGTCCTATTCTGTTCC
167 GATCT-AGGAGAAAAGTTGTTTAAAGTCTTTATGAGTCCATGGTATTATGGTCCTATTATGTTCC
* * * **
14269628 CTATTTAGCAGTTGGTTCTCCACCCTGGTTATTTGTTCCCTTG-TAATGTTTACACGTTTTTGGG
231 CTATTTGGCAGTTGATTCTCCTCTTTGGTTATTTGTTCCC-TGCTAATGTTTACACGTTTTTGGG
* * * * * *
14269692 GAAATATTGTCTTATAATAAAGACATGTACTTCTCAAATTCATTACGTCTCAAACTGGTCACAAT
295 GAAATATGGTATTATAGTAAAGACATGTACGTCTCAAATTCATTACGTCTCAAATTGATCACAAT
*
14269757 AACCTGCAATGCCACCTCCAACAAAGTCTCTTATCGAAAAAGTTGAATCCAAATACTATAATAAT
360 AACCTGCAATGCCACCTCCAACAAAGTCTCTTATCGAAAAAATTGAATCCAAATACTATAATAAT
* * * *
14269822 AC-AGGCAAA-ATGGTCATTAGTAATATAAAACCAAAAAAACAGTTAGCATTTTGAATAGAAAAA
425 ACGA-GCAAATATGGTGATTAGTAATATAAAACCATAACAACAGTTAGCATTTTGAATATAAAAA
* * * * *
14269885 ACGGTTATATTGTGGTTTTAGCCCCACTAATATTATTTTTCTTTTTTTATTTAAAATAAGATAAA
489 ATGGTTATATTGTGGTTTTAGTCCCACTAATATAATTTTTC-CTTTTTATTTAAAATAAGACAAA
* * * * * * *
14269950 TTCATAAGAATCTGAAAATTACACCTACGAAATTTAAACAAACATGACAAGGCTACTTATAG
553 ATCATAAGAATCTGAAAATTACACCTACGAAAATTACACAAAAATCACAAGACTGCTT-TAG
** * * * * *
14270012 CCTTCAAATTCACTCCTTTCTTCCTTCAACTCACATAATCATATATCTCATCTTTTTCATTCTTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTCTTT
* * * ** *
14270077 ACTTATTTTCGACTCTAAAATGTTTTGAATACAAACTCTTGCGTTCTCAGTCCTTTTTATAACCG
66 ACTTATTTTCGACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAACCG
* * ** *
14270142 CTTATACAGT-GATTCTCTACCTTCTCACACATTCTGATAC-AGGAGAAAAGCTGTTTAAAGTCT
131 CTTATACAGTCGATTCTTTACCTTTTTGCACATTCTGAT-CTAGGAGAAAAGTTGTTTAAAGTCT
** * * *
14270205 TTATGAGTCCATGGTATTATAATCCTTTTATGTTCCCTACTTGGTAGTTGATTCTCC-C-TTGGT
195 TTATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTGGT
* * * * *
14270268 TTTTTGTTCCTTGCTAATGTTTACACGTTTTTAGAGAAATATGGTATTATAGTAGAGACATGTAC
260 TATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGTAC
* * * *
14270333 GTCTCGAATTCATTTCGTCTCAAATTGATCACAATAACCTGTAATGCCACCTCCAACAAACTCTC
325 GTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCTC
** * * *
14270398 TTATCGAAAAAATTGAATATAAATACTATAAGAATACGAG-AAA-AT-ATGATTGGTAATATAAA
390 TTATCGAAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAA
* *
14270460 ACCATAACAAC-GATTACCATTTT-AGATATAAAAAATGGTTAGATTGTGGTTTTAGTCCCACTA
455 ACCATAACAACAG-TTAGCATTTTGA-ATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACTA
* * * *
14270523 ATATAA-------TTTTT-TTTAGAATAAGACAAAATGACAAGAATCTGAAAATTACACCTA-TA
518 ATATAATTTTTCCTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTACGA
14270579 CAAATTACACAAAAATCACAAGACTGGCTTTAG
583 -AAATTACACAAAAATCACAAGACT-GCTTTAG
* * * * *
14270612 CCTTTAAGCTCCCTCATTTCTTCTTTCATC-CTTCAT-ACTCCCTCATTTCTTCA-CTCTTCCTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTC-TCATCA-T-CAT-ATTTC-TCATC-CTT--TT
* *** * * * **** * * *
14270674 CAAGCTCCCAACTTTATTCCTTCAACTCTCATCATCAAAT-TTCT-CACCCTTTTCATTGTTTAC
58 C-A-TTCTTTAC-TTATT--TTCGA--CTC-T-A--AAATGTT-TGGA--ATAGAAACT-CTTGC
** * * * ** ** *
14270737 TTATTTTC-GACTCTAAAATGTTTGGCATAGAAACTCTTCCATGGTTAG-CCCTTTTTATAACCG
108 --ATGGTCAG-CCCT----T-TTT---AT--AACCGCTT--AT--ACAGTCGATTCTT-T-A-C-
* * * * * * ***
14270800 CTTATAT-AACGATTTTGTACCTTCTCGAATAGTCTGCTTTAGGAGAAAAGTTGTTTAAAGTCTT
152 CTT-TTTGCAC-ATTCTG-A---TCTAGGAGA-AAAG--TT------------GTTTAAAGTCTT
14270864 TATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTGGTT
196 TATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTGGTT
* ** *
14270929 ATTTGTTTCCTGCTAATGTTTACATATTTCTGGGGAAATATGGTATTATAGTAAAGACATGTACG
261 ATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGTACG
* * * * * * *
14270994 TCACAAATTCATTACATCTTAAATTGATCACAATAACCTACAATGTCACCTCCAAAAAAATCTCC
326 TCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCT-C
* * * * * *
14271059 TT-TTGAAAAAATTGGATCCAAATACTTTAATAATACGATCAAGTATGGTGATTACTAATATAAA
390 TTATCGAAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAA
*
14271123 ACCATAACAACAGTTAGCATTTTGAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCACTAAT
455 ACCATAACAACAGTTAGCATTTTGAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACTAAT
* * * * * *
14271188 AGAATTTTTCTTTTTTTATTTAAAAGAAGACAAAATCATAAGAATCTGAAAAGTACCCCTATGAA
520 ATAATTTTTC-CTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTACGAA
* * * *
14271253 AATTACACAAAAATCACATGACTACCTTAAA
584 AATTACACAAAAATCACAAGACT-GCTTTAG
* * *
14271284 CCTTTAAGCTCCCTCCTTTTTTCCCTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGC-T
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATT-CTT
* * * * * *
14271348 TAATTATTTTAGACTCTAAAATGTTTGGAATAGAAACTTTTGCATGGTCAACCCTTTCTATAACT
65 TACTTATTTTCGACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAACC
* * * * *
14271413 GCTTATACAGT-GATTCTCTACCTTTTTGTACATTTTGATTTAGGAGAAAAGCTT-CTTAAAGTC
130 GCTTATACAGTCGATTCTTTACCTTTTTGCACATTCTGATCTAGGAGAAAAG-TTGTTTAAAGTC
* * * * *
14271476 ATTACGAGTCCATGGTTTTATGGTCCTATTATGTACCCTATTTGGCAGTTGATTCTTCTCTTTGG
194 TTTATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTGG
* ** * * * *
14271541 TTATTT-TTTCCTATTAATATTCACACGTTTTTAGAGAAATATGGTATTATAGTAAAGACA--T-
259 TTATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGTA
* * *
14271602 -G------------TACGTCTCAAATTGATCACCATAACATGCAATGCCACCTCCAACAATGTCT
324 CGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCT
* * * * * * *
14271654 CTTAT-AAAAAAATTGATTCCAAATATTATAATAATACAAGAAAATATGATAATTAGTAATATAA
389 CTTATCGAAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAA
* * * * * * * * *
14271718 AACCATAACAATAATTAGAATTTTTAATGTAAAAAATAGTTTTATTGTGGTTTCAGTCCTACTAA
454 AACCATAACAACAGTTAGCATTTTGAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACTAA
* *
14271783 TATAAATTTT-CTTTTT-TTT-AAATAAGACAAAATCACAAGAATCTGAAAATTACACCTACGAA
519 TATAATTTTTCCTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTACGAA
14271845 AATTACACAAAAATCACAAGACTGACTTTAG
584 AATTACACAAAAATCACAAGACTG-CTTTAG
** *
14271876 TCTTCATGTTCCCTCATTTCTTCACTCCTCCTTCAAGCTCCCTACTTTCTCCTTTAACCTCTCAT
1 -C--C----T---TCA-AGC-T--C-CCTCC-T-----T---T-C--T-TCCTTCAA-CTCTCAT
* * * *
14271941 CGTCATATTTCTTATCCTTTTCAATGTTTACTTATTTTCGACTCTAAAATGTTTGGAATAGAAAC
37 CATCATATTTCTCATCCTTTTCATTCTTTACTTATTTTCGACTCTAAAATGTTTGGAATAGAAAC
* * * * * * *
14272006 TCTTACATGGTCAGCCTTTTTTATAACCGCTTATAAAG-CGATTCTCTACCGTCTCGCACATTCT
102 TCTTGCATGGTCAGCCCTTTTTATAACCGCTTATACAGTCGATTCTTTACCTTTTTGCACATTCT
* * * *
14272070 GCT-TCAGGAGAAAACTTGTTTAGAGTCTTTATGAGTCCATGGTATTATGGTCCTATTCTGTTCC
167 GATCT-AGGAGAAAAGTTGTTTAAAGTCTTTATGAGTCCATGGTATTATGGTCCTATTATGTTCC
* * * **
14272134 CTATTTAGCAGTTGGTTCTCCACCCTGGTTATTTGTTCCCTTG-TAATGTTTACACGTTTTTGGG
231 CTATTTGGCAGTTGATTCTCCTCTTTGGTTATTTGTTCCC-TGCTAATGTTTACACGTTTTTGGG
* * * * *
14272198 GAAATACT-GTCTTATAGTAAAGACATGTACTTCTCAAATTCATTATGTCTCAAACTGGTCACAA
295 GAAATA-TGGTATTATAGTAAAGACATGTACGTCTCAAATTCATTACGTCTCAAATTGATCACAA
* * ** * * *
14272262 TAACCTGCAATGCCACCTCTAACAAAGTTTCTTATCGAAAAAGCTGAAACTAATTACTATAATAA
359 TAACCTGCAATGCCACCTCCAACAAAGTCTCTTATCGAAAAAATTGAATCCAAATACTATAATAA
* * * *
14272327 TAC-AGGAAAATATGGTCATTAGTAATATAAAACCAAAACAACAGTTAGCATTTTGAATAGAAAA
424 TACGA-GCAAATATGGTGATTAGTAATATAAAACCATAACAACAGTTAGCATTTTGAATATAAAA
* * * * * *
14272391 AATTGTTATATTATGGTTTTAGTCCCACTATTATTATTTTTCTTTTTTATTTAAAATAAGATAAA
488 AATGGTTATATTGTGGTTTTAGTCCCACTAATATAATTTTTCCTTTTTATTTAAAATAAGACAAA
* * * * *
14272456 TTCATAAGAATCTGAAAATTACACCTACGAAAATTAAACAAAAATCACAAGGCTACCTATAG
553 ATCATAAGAATCTGAAAATTACACCTACGAAAATTACACAAAAATCACAAGACT-GCTTTAG
* * * * * * *
14272518 CCTCCAAGCTCCCTCATTTCTTCATTCAACTCACATCATCATATATCTCATCTTTTTCATTATTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTCTTT
** * * * *
14272583 ACTTATTTTTTACTCTAAAATG-TTGTGAATACAAACTCTTGCATTGTCAACCCTTTTTATAATC
66 ACTTATTTTCGACTCTAAAATGTTTG-GAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAACC
* * * * * *
14272647 GTTGTATA-AGT-GATTCTCTACCTTCTTGCACATTGTGATATAGGAGAAAAGTTATTTAAAGTC
130 GCT-TATACAGTCGATTCTTTACCTTTTTGCACATTCTGATCTAGGAGAAAAGTTGTTTAAAGTC
* * * * * *
14272710 TTTATGAGTCCATGGTATTATAGTCCTTTTATGTTACCTGTTTGGTAATTGATTCTCC-C-TTGG
194 TTTATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTGG
* *
14272773 TTATTTGTTCCTTGCTATTGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGTA
259 TTATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGTA
* * * *
14272838 CGTCTCAAATTCATTACGTTTCAAATTGATCACAATAACCTGTAATGCCACGTCCAACAAACTCT
324 CGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCT
* ** *
14272903 CTTATCGAAAAAACTGAATATAAATACTATAAGAATACGAGC-AA-AT--TGATTAGTAATATAA
389 CTTATCGAAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAA
* * * *
14272964 AACCATAACAAC-GATTA-CTATTTTCAATATAAAAAATGGTTAGATTGTGCTTTTAGT-CCTCT
454 AACCATAACAACAG-TTAGC-ATTTTGAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACT
* * * * * *
14273026 AATATGAATTTTCTTCTTCTT-TTTAGAATAAGACAAAATGACAAGAATCTTAAAATTACACCTA
517 AATAT-AATTTT-TCCTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTA
* * *
14273090 CAAAAATTACACAAAAATCATAAGACTACCTTTAG
580 CGAAAATTACACAAAAATCACAAGACT-GCTTTAG
* * * *
14273125 CCTTCAGGCTCCCTCCTTTCTTCTTTCATC-CTTCAT-ACTC-CATTTCTTCA-CACTTCCTTCA
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTC-TCATCA-TCATATTTC-TCATC-CTT--TTC-
* ** * * ** * ** * * *
14273186 AGCTCCCTACTTTATTCCTTCAACTCTCATCATCAAAT-TTCTCAGCCTTGTCATTGTTTCTTAT
59 A-TTCTTTAC-TTATT--TTCGA--CTC-T-A--AAATGTT-T-GGAATAGAAACTCTTGC--AT
** * * * * ** ** *
14273250 TTTC-GACTCTAAAATATTTGGAGTAGAAACTCTTGTATGGTTAGCCCTTTTTATAACCGCTTAT
110 GGTCAG-CCCT----T-TTT--A-T--AACCGCTTATACAG-T--CGATTCTT-T-A-C-CTT-T
* * * * * * *** *
14273314 AT-AACGATTTTGTACCTTCTCGCACAGTCTGCTTTAGGAGAAAAGTTGTTTAAAGTCTGTATGA
156 TTGCAC-ATTCTG-A---TCTAGGAGA-AAAG---T-----------TGTTTAAAGTCTTTATGA
* * * * *
14273378 GTCCATGGTATTATAGTCCTATTATGTCCCCTATTTGACAGTTGATTCCCCTATTTGGTTATTTG
201 GTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTGGTTATTTG
* * * *
14273443 TTTCCTGCTAATGTTTACATGTTTCTGGGGAAATATGGTATTATAGTAAAAACATGTACGTCTCA
266 TTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGTACGTCTCA
* * * *
14273508 AATTCATTACATCAT-AAATTGATCACAATAACATGCAATGCCACCTCCAAAAAAGTCTCCTATC
331 AATTCATTACGTC-TCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCTCTTATC
* * *
14273572 GAAAAAATTGGATCCAAATACTATAATAATATGATCAAATATGGTGATTAGTAATATAAAACCAT
395 GAAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAAACCAT
* *
14273637 AACAACAGCTAGCATTTTGAATATAAAAAATGGTTATATTGTCGTTTTAGTCCCACTAATATAAT
460 AACAACAGTTAGCATTTTGAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACTAATATAAT
* * * * *
14273702 TTTTCTTTTTTATTTAAAAGAAGACAAAATCATAAGAATCTGAAAAGTACCCCTATGAAAATTAC
525 TTTTCCTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTACGAAAATTAC
* * * *
14273767 ACAAAAATCACATGACTACCTTAAA
590 ACAAAAATCACAAGACT-GCTTTAG
* * *
14273792 CCTTTAAGCTCCCTCCTTTTTTCCCTCAACTCTCATCATCATATTTCTCATCCTTTTCATTGC-T
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATT-CTT
* * * * *
14273856 TAATTATTTTAGACTCTAAAATGTTTGGAATAGAAACTTTTGCATGGTCAACCCTTTTTATAACT
65 TACTTATTTTCGACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAACC
* *
14273921 GCTTATACAGT-GATTC-TCACACTTCTT-CTACATTCTGAT-TGAGGAGAAAAGCTT-TTTAAA
130 GCTTATACAGTCGATTCTTTAC-CTTTTTGC-ACATTCTGATCT-AGGAGAAAAG-TTGTTTAAA
* * * * *
14273981 G-CATTATAAGTCCATGGTTTTATGGTCCTATTATGTACCCTATTTGGCAGTTGATTCTCCCCTT
191 GTCTTTATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTT
* * * *
14274045 TGGTTATTTGTTCCCTGTTAATATTTACATGTTTTTGGAGAAATATGGTATTATAGTAAAGACAT
256 TGGTTATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACAT
* * ** *
14274110 GTACGTCTCAAATTCATTACGTCTCAAATT-AGTCACCATAACTTGCAACACCACCTCCAACAAT
321 GTACGTCTCAAATTCATTACGTCTCAAATTGA-TCACAATAACCTGCAATGCCACCTCCAACAAA
* * *
14274174 GTCTCTTATCGAAAAAAATTGAATCCAAATACTATAATAATAAGAGCAAGTATGGTCATTAGTAA
385 GTCTCTTATCG-AAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAA
* * * *** *
14274239 TATAAAACCATAACAACAATTAGAATTTTTAATATAAAAAACAATCT-TATTGTGGTTTCAGTCC
449 TATAAAACCATAACAACAGTTAGCATTTTGAATATAAAAAATGGT-TATATTGTGGTTTTAGTCC
* * * *
14274303 CACTAATATAATTTTT-CTTTTTTTTCTAGAATAAGACAAAATCACAAGAATTTGAAAATTACAC
513 CACTAATATAATTTTTCCTTTTTATT-TAAAATAAGACAAAATCATAAGAATCTGAAAATTACAC
* *
14274367 CTAGGAAAATCACACAAAAATCACAAGACTGCCTTTAG
577 CTACGAAAATTACACAAAAATCACAAGACTG-CTTTAG
* * * * * * * *
14274405 TCTTCATGTTCCCTCCTTTCTTCTTTCAAC-CTTCA-AACTCCCTCCTTTCTTCACTCCTCCTTC
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTC-TCATCA-T-CAT-ATTTC-TCA-TCCT-TTTC
* ** * * *** **** * * *
14274468 AAGCTCCCTACTT-TCTCGCTT-AACCTCTCATCATCATATTTCTTATCATTTTTATTGTTTACT
59 -A-TTCTTTACTTAT-T---TTCGA-CTCT-A--A--A-ATGT-TTGGAATAGAAACT-CTTGC-
** * * * * * ** * *
14274531 TATTTTC-GACTCTAAAATGTTTGGAATAGAAACTCTTACATGGTCAGCCCCTTTCATAACCGCT
108 -ATGGTCAG-CCCT----T-TTT---AT--AACCGCTT--AT--ACAG-TCGATTCTTTA-C-CT
** ** * *
14274595 TATAAAGCGATTCTCTACCGTCTCACACATTCTGCTTCAAGAGAAAAGTTGTTTAAAGTCGTTAT
154 T-T-TTGC-A--C---A---T-T----C-TGAT-C-T-AGGAGAAAAGTTGTTTAAAGTCTTTAT
* * * * * * *
14274660 GAGTCTATGGTATTATGGTCTTATTCTGTTCCCTGTTTGGCATTTGATTCTCCACTCTGGTTATT
199 GAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTGGTTATT
* * *
14274725 TGTTCCCTTG-TAATGTTTACATG-TTTTGGGGAAATATTGTATTATAGTAAAGACATGTACTTC
264 TGTTCCC-TGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGTACGTC
* * *
14274788 TCAAATTCATTACGTCTCAAATTGGTCACAATAACCTGGAATGCCACCTCCAACAATGTCTCTTA
328 TCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCTCTTA
** * * * ** * *
14274853 TCGAAAAAGCTGGATCCAAATGCTATAATAATATGAGCAAATATGGTTCTCAATAATATAAAACC
393 TCGAAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAAACC
* * * * * *** *
14274918 AAAACAACATTTAGCATTTGGAATAGAAAGAATGGTTATATTGTGGTTTTAGTCTGTCTAATATT
458 ATAACAACAGTTAGCATTTTGAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACTAATATA
* *
14274983 ATTTTTCCTTTTTGTTTAAAATAAGATAAAATCATAAGAATTCT-AAAATTACACCTACGAAAAT
523 ATTTTTCCTTTTTATTTAAAATAAGACAAAATCATAAGAA-TCTGAAAATTACACCTACGAAAAT
* * * * *
14275047 TAAACAAAAAATCTCTAGGCTACCTTTAG
587 TACAC-AAAAATCACAAGACT-GCTTTAG
* * * * * * *
14275076 CCTTCAGGCTCCCTCCTTTCTTCTTTCAATTCACATCATCATATCTCTTATCTTTTTCATTAC-T
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATT-CTT
* ** * *
14275140 TACTTATTTTC-ACCTCTAAAATGTTTTGAAT-GCAAACTCTCACATTGTCAGCCCTTTTTCTAA
65 TACTTATTTTCGA-CTCTAAAATGTTTGGAATAG-AAACTCTTGCATGGTCAGCCCTTTTTATAA
** * * * * * *
14275203 CCGCTTATGTAGT-TATTCTCTACCTTCTCGCACATTCT-ATTTTAGGAGAAAAGCTGTTTAAAG
128 CCGCTTATACAGTCGATTCTTTACCTTTTTGCACATTCTGA-TCTAGGAGAAAAGTTGTTTAAAG
* * ** *
14275266 TCTTTATGAGTCCATGGTATTATAGTCCTTTTATGTTCTTTATTTGGTAGTTGATTCT-C-CTTT
192 TCTTTATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTT
* * *
14275329 GGTTATTTGTTCCCTGCTAATGTTTACACGGTTTTGGGGAAATATGGGATTATAGTAAAGAGATG
257 GGTTATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATG
* * * * * *
14275394 TACGTCTCAAATTCAGTACATCTAAAATTGATAACAATAACCTGTAATGCCATCTCCAACAAAGT
322 TACGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGT
* ***
14275459 CTCTTATTGAAAAAATTGAAGATAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATAT
387 CTCTTATCGAAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATAT
* * * * * ***
14275524 AAAACCATAACAACAATTAACATTTTCAATATAAAAAATGGTTAGATTGTGGTTTTACTCTTGCT
452 AAAACCATAACAACAGTTAGCATTTTGAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACT
* * * *
14275589 AATATAATTTTT-CTTTTT-TTTTAAATAAGACAAAAT-AGCAATAATCTGAAAATTACACCTAT
517 AATATAATTTTTCCTTTTTATTTAAAATAAGACAAAATCA-TAAGAATCTGAAAATTACACCTAC
14275651 GAAAATTACACAAAAATCACAAGACTGCCTTTAG
581 GAAAATTACACAAAAATCACAAGACTG-CTTTAG
* * * * *
14275685 CCTTCAGGCTCCCTTCTTTCTTCTTTCAAC-CTTCA-AACTCCCTCATTTCTTCA-CTCTTCCTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTC-TCATCA-T-CAT-ATTTC-TCATC-CTT--TT
* * ** * ** ** * * * * *
14275747 AAAGCTCCCTAATT-TCTTCCTTAACCTCTCATCATCGTATTTG--T--CATCGT-TTTCATTGT
58 -CA-TTCTTTACTTAT-TT--TCGA-CTCT-AAAAT-GT-TTGGAATAGAAAC-TCTTGCA-TGG
* ** ** * * ** ** * **
14275806 TTA-CTTATTTTTGACTCTAAAATGTTTAGAATAGAAACTCTTGCATGGTCAGCCCTTTTTAAAA
112 TCAGC-CCTTTTT-A---T-AACCGCTT---ATACAGTCGATT-C-T--TTA--CCTTTTT-GCA
**** * ** * ** *
14275870 CCACTTAC--A-C-AGCGATTCTCTA-TTGTCTCGCACATTCTGCTTTAGGAG-AAAAGATGT-T
161 -CA-TT-CTGATCTAG-GA--GAAAAGTTGT-T--TA-A-AGT-CTTTATGAGTCCATG--GTAT
** * *
14275928 TAAAGTCTTTATGAGTTCATGGTATTATGATCCTATTATATTCCTTATTTGGTAGTTGATTCTCC
212 TATGGTC---CT-A-TT-AT-G-----T--T-C---------CC-TATTTGGCAGTTGATTCTCC
* * ** * *
14275993 TATTTGGTTATTTATTCCCTTG-TAATGTTTACACGTTTTTGGGGAAATATAATATTACAGCAAA
252 TCTTTGGTTATTTGTTCCC-TGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAA
* * * * * * *
14276057 GACAAGTACGTCTCAAATTCATTACGTCTCAAATTGGTCATAA-ATACATGCAATACTAGCTCCA
316 GACATGTACGTCTCAAATTCATTACGTCTCAAATTGATCACAATA-ACCTGCAATGCCACCTCCA
*
14276121 ACAAAGTCTCTTATCGAAAAAATTGAATCCAAATACTATAATTATACGAGCAAATATGGTGATTA
380 ACAAAGTCTCTTATCGAAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTA
* * **
14276186 GTAATATAAAACCATAACAACAGTTAGCATTTTCAATATAAAAAATGGATATATTGTCATTTTAG
445 GTAATATAAAACCATAACAACAGTTAGCATTTTGAATATAAAAAATGGTTATATTGTGGTTTTAG
* * * *
14276251 TCCCACTAATATAATTTTTCATTTTTAGTTAAAATAAGACAAAATCATAAAAATTTGAAAATTAC
510 TCCCACTAATATAATTTTTCCTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTAC
* * * * * *
14276316 ATCAATGAAAATTACATAAAAATCACAAGGCTACCTTTAG
575 ACCTACGAAAATTACACAAAAATCACAAGACT-GCTTTAG
* * * * *
14276356 CCTTCAAGTTCCCTCCTTTCTTCTTTCATC-CTTCAT-ACTCCCTCATTTCTACA-CTTTTTC-T
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTC-TCATCA-T-CAT-ATTTCT-CATCCTTTTCAT
** * * * * * * ** *** * * * * *
14276417 TCAAGCTCCCTGTTTT--ACTCCTTCAACTCTCATCATCAAATTTCTCATCCCTTTCATTGTTTA
61 TC--TTTACTTATTTTCGACT-C-TAAAATGT--T--TGGAA--TAGAAACTCTTGCA-TGGTCA
* * * * * * ** * *
14276480 ---CTTATTT-TGGA-CTC-TATA-ATGTTTGGAATATAAACTCTTGCATGGTCAGCCCTTTCT-
115 GCCCTT-TTTAT-AACCGCTTATACA-G--TCG-AT-T---CT-TTACCT-TTTTGCACATTCTG
* * * * * *** *
14276537 AT-TACCGCTTATATAACAATTTTGTACCTTCCCATACATTCTGCTTTAGGAGAAAAGTTGT-TT
168 ATCTA--G----GAGAA-AA-GTTGT---TT---A-A-A--GT-CTTTATGAGTCCA-TGGTATT
** *
14276600 AAAGTCTTTATGAGTCCATGGCATTATGATCCTATTATGTTCCCTATTTGGCAATTGATTCTCCT
213 ATGGTC-------------------------CTATTATGTTCCCTATTTGGCAGTTGATTCTCCT
* * * ***
14276665 CTCTT-GTTATTTATTCCCTACTAATGTTTACAAGTTTTTGAAAAAATATGGTATTATAGTAAAG
253 CT-TTGGTTATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAG
* *
14276729 ACA--T--G------------TACGTCTCAAATTGATCACAATAACTTGCAATGCCACCT-CAAA
317 ACATGTACGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAAC
* *
14276777 AAAGTCTCTTATCGAAAAAATTGGATCCAAATACTATAATAATACGATCAAATATGGTGATTAGT
382 AAAGTCTCTTATCGAAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGT
* * * *
14276842 AATATAAAACCATAACAACACTTAGCATTTTCAATATAAAAAATGGTTATGTTGTTGTTTTAGTC
447 AATATAAAACCATAACAACAGTTAGCATTTTGAATATAAAAAATGGTTATATTGTGGTTTTAGTC
** *
14276907 CCACTAATATAATTTTTAATTTTTATTTTAAATAAGACAAAATCATAAGAATCTGAAAATTACAC
512 CCACTAATATAATTTTTCCTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACAC
* * * * *
14276972 CTATGAAAATTACAAAAAAATCACAAGATTGCCTATAA
577 CTACGAAAATTACACAAAAATCACAAGACTG-CTTTAG
** * * * *
14277010 CCTTCAAGCTCTATCCTTTTTTCCCTCAACTCTCATCATCATATTGCTCATCCTTTTCATTGTTT
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTCTTT
* ** * * *
14277075 ACTTTTTTTTTACTTTAAAATGTTTGAAATAGAAACTTTTGCATGGTCAGCCCTTTTTATAACCG
66 ACTTATTTTCGACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAACCG
* * * * * *
14277140 CTTATACAGT-GATTCTCTAGCTTATTGCACATTCTAATTTAGGAGAAAA-TCTTTTTAAAGTC-
131 CTTATACAGTCGATTCTTTACCTTTTTGCACATTCTGATCTAGGAGAAAAGT-TGTTTAAAGTCT
* * * *
14277202 --ATGAGGCCATGGTTTTATGGTCCTATTATGTTCCCTATTTGGAAGTTGATTCTTCTCTTTGGT
195 TTATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTGGT
* ** *
14277265 TATTTGTTCCCTGCTAATATTTACACGTTTTTGGGGGAAATATGGTATTATAACAAAGACAAGTA
260 TATTTGTTCCCTGCTAATGTTTACACGTTTTT-GGGGAAATATGGTATTATAGTAAAGACATGTA
* * * ** * **
14277330 CGTCTCAAATTTATTCCGTCTCGAATTGATCACAATAACCCACAATCCCACCTCCAACAATTTCT
324 CGTCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCT
* * * * * *
14277395 CTTATCGAAAAAGTTGAATCCAAATACTATAATAATAGGAGTAAATATGATAATTAGTACTATAA
389 CTTATCGAAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAA
* ** * *
14277460 AACCATAACAAGAGTTAAAATTTTTAATATAAAAAATAGTTATATTGTGGTTTTAGTCCCACTAA
454 AACCATAACAACAGTTAGCATTTTGAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACTAA
* * * * * *
14277525 TATGA----T--TTTTT-GTT-GAATAAGACAAAATCATAAAAATCTAAAAATTACACGTACGAA
519 TATAATTTTTCCTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTACGAA
*
14277582 AATTACACAAAAACCACAAGACTGCCTTTAG
584 AATTACACAAAAATCACAAGACTG-CTTTAG
* * * * *
14277613 TCTTTATGCTCCCTTCTTTCTTCTTTCA
1 CCTTCAAGCTCCCTCCTTTCTTCCTTCA
14277641 GCCTTCAAAT
Statistics
Matches: 11343, Mismatches: 2241, Indels: 2012
0.73 0.14 0.13
Matches are distributed among these distances:
592 66 0.01
593 67 0.01
594 95 0.01
595 7 0.00
596 117 0.01
597 202 0.02
598 88 0.01
599 13 0.00
600 94 0.01
601 82 0.01
602 34 0.00
603 102 0.01
604 11 0.00
605 13 0.00
606 31 0.00
607 185 0.02
608 92 0.01
609 167 0.01
610 301 0.03
611 678 0.06
612 1019 0.09
613 1669 0.15
614 124 0.01
615 80 0.01
616 32 0.00
617 23 0.00
618 38 0.00
619 39 0.00
620 36 0.00
621 224 0.02
622 72 0.01
623 215 0.02
624 60 0.01
625 11 0.00
626 12 0.00
627 32 0.00
628 32 0.00
629 24 0.00
630 30 0.00
631 21 0.00
632 38 0.00
633 55 0.00
634 43 0.00
635 23 0.00
636 32 0.00
637 49 0.00
638 92 0.01
639 219 0.02
640 113 0.01
641 50 0.00
642 172 0.02
643 51 0.00
644 17 0.00
645 23 0.00
646 38 0.00
647 35 0.00
648 18 0.00
649 14 0.00
650 14 0.00
651 50 0.00
652 28 0.00
653 28 0.00
654 267 0.02
655 61 0.01
656 27 0.00
657 134 0.01
658 175 0.02
659 233 0.02
660 158 0.01
661 170 0.01
662 104 0.01
663 256 0.02
664 39 0.00
665 23 0.00
666 25 0.00
667 206 0.02
668 53 0.00
669 348 0.03
670 229 0.02
671 1013 0.09
672 361 0.03
673 10 0.00
681 1 0.00
682 1 0.00
684 1 0.00
689 1 0.00
690 2 0.00
691 2 0.00
692 1 0.00
693 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.37
Consensus pattern (613 bp):
CCTTCAAGCTCCCTCCTTTCTTCCTTCAACTCTCATCATCATATTTCTCATCCTTTTCATTCTTT
ACTTATTTTCGACTCTAAAATGTTTGGAATAGAAACTCTTGCATGGTCAGCCCTTTTTATAACCG
CTTATACAGTCGATTCTTTACCTTTTTGCACATTCTGATCTAGGAGAAAAGTTGTTTAAAGTCTT
TATGAGTCCATGGTATTATGGTCCTATTATGTTCCCTATTTGGCAGTTGATTCTCCTCTTTGGTT
ATTTGTTCCCTGCTAATGTTTACACGTTTTTGGGGAAATATGGTATTATAGTAAAGACATGTACG
TCTCAAATTCATTACGTCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCTCT
TATCGAAAAAATTGAATCCAAATACTATAATAATACGAGCAAATATGGTGATTAGTAATATAAAA
CCATAACAACAGTTAGCATTTTGAATATAAAAAATGGTTATATTGTGGTTTTAGTCCCACTAATA
TAATTTTTCCTTTTTATTTAAAATAAGACAAAATCATAAGAATCTGAAAATTACACCTACGAAAA
TTACACAAAAATCACAAGACTGCTTTAG
Found at i:14264342 original size:29 final size:29
Alignment explanation
Indices: 14264290--14264370 Score: 87
Period size: 29 Copynumber: 2.8 Consensus size: 29
14264280 GTCTTCACGT
*
14264290 TCCCTCATTTCTTCTTTCAACCTTCAAAC
1 TCCCTCATTTCTTCCTTCAACCTTCAAAC
* *
14264319 TCCCTCATTTCTTCACTTC-TCCTTCAAGC
1 TCCCTCATTTCTTC-CTTCAACCTTCAAAC
*
14264348 TCCCT-ACTTTCTCCCTT-AACCTT
1 TCCCTCA-TTTCTTCCTTCAACCTT
14264371 TCATCATCAT
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
28 8 0.18
29 33 0.75
30 3 0.07
ACGTcount: A:0.16, C:0.41, G:0.01, T:0.42
Consensus pattern (29 bp):
TCCCTCATTTCTTCCTTCAACCTTCAAAC
Found at i:14264965 original size:671 final size:671
Alignment explanation
Indices: 14263668--14264981 Score: 1662
Period size: 671 Copynumber: 2.0 Consensus size: 671
14263658 TTGCCTTTAA
* * *
14263668 CCTTCAAGCTCCCTTCTTTTTTCCTTCAACTCTCATCATCATATTTCCCATCCTTCTCATTGTTT
1 CCTTCAAGCTCCCTACTTTCTCCCTTCAACTCTCATCATCATATTTCCCATCCTTCTCATTGTTT
* * * * *
14263733 ACTTCTTTTAGACTCTAAAATGTTTGGAATAGAAGCTTTTGCATGGTCAGACCTTTTTATAACCG
66 ACTTATTTTAGACTCTAAAAAGTTTGGAATAGAAACTCTTACATGGTCAGACCTTTTTATAACCG
* * * * * *
14263798 CTTATACAGTGATTCTCACACTTTTTGCACATTCTGATTTAGGAGAAAAGCTTTTTAAAATCATT
131 CTTATAAAGCGATTCTCACACGTCTCGCACATTCTGATTAAGGAGAAAAGCTTTTTAAAATCATT
* * * * *
14263863 ATGACTTCATGGTTTTACGGTCCTATTATGTACCCTATTTGGCAGTTGATTTCCGCTTTGGTATT
196 ATGACTCCATGGTATTACGGTCCTATTATATACCCTATTTGGCAGTTGATTTCCACTTAGGTATT
* * * * *
14263928 TTGTTCCCTGCTAATATTTACACTTTTTTTGAGAAATATGGTATTATAGTAAAGACTTGTACGTC
261 TTGTTCCCTGCTAATATTTACACGTTCTTAGAGAAATATGGTATTATAATAAAGACATGTACGTC
*
14263993 TCAAATTCATTACATCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAATGTCGCTTA
326 TCAAATTCATTACATCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCGCTTA
* * * *
14264058 TTGAAAAAAATTGAATCGAAATACTATAATAATACGAGCAAATATGATAATTAGTAATATAAAAC
391 TCGAAAAAAATTGAATCCAAATACTATAATAATAAGAGCAAATATGATAAGTAGTAATATAAAAC
* * * * * *
14264123 GATAACAACAATTAGAATTTTTAATATAAAAAATAGTTTTATTCTAGTTTCAGTCCCACTAATAT
456 AAAAAAAACAATTAGAATTTTGAATATAAAAAACAGTTATATTCTAGTTTCAGTCCCACTAATAT
*
14264188 AAATTTTCTTTTTTTTCTATAATAAGACAAAATCACAAGAATCTGAAAATTACACCTACGAAAAT
521 AAATTTTCTTTTTTTTCTAAAATAAGACAAAATCACAAGAATCTGAAAATTACACCTACGAAAAT
* * * * * *
14264253 TACACAAAAATCATAAGACTACCTTTAGTCTTCACGTTCCCTCATTTCTTCTTTCAACCTTCAAA
586 TAAACAAAAATCACAAGACTACCTATAGCCTTCAAGTTCCCTCATTTCTTCCTTCAACCTTCAAA
14264318 CTCCCTCATTTCTTCACTTCT
651 CTCCCTCATTTCTTCACTTCT
* ** *
14264339 CCTTCAAGCTCCCTACTTTCTCCCTT-AACCTTTCATCATCATATTTCTTATCCTTTTCATTGTT
1 CCTTCAAGCTCCCTACTTTCTCCCTTCAA-CTCTCATCATCATATTTCCCATCCTTCTCATTGTT
* * *
14264403 TACTTATTTTCGACTCTAAAAAGTTTGGAATAGAAACTCTTACATGGTCAGGCTTTTTTATAACC
65 TACTTATTTTAGACTCTAAAAAGTTTGGAATAGAAACTCTTACATGGTCAGACCTTTTTATAACC
*
14264468 GCTTATAAAGCGATTCTCTAC-CGTCTCGCACATTCT-ACTTCAAGG-GAAAAG-TTGTTTAAAG
130 GCTTATAAAGCGATTCTC-ACACGTCTCGCACATTCTGA-TT-AAGGAGAAAAGCTT-TTTAAAA
* * * * *
14264529 TCTTTATGAGTCCATGGTATTATGGTCCTATTCTATTCCCTATTTGGCAGTTGATTCTCCACTCT
191 TCATTATGACTCCATGGTATTACGGTCCTATTATATACCCTATTTGGCAGTTGATT-TCCACT-T
* * * * *
14264594 AGTTA-TTTGTTCCCTTG-TAATGTTTACACGTTCTTAGGGAAATATTGTCTTATAATAAAGACA
254 AGGTATTTTGTTCCC-TGCTAATATTTACACGTTCTTAGAGAAATATGGTATTATAATAAAGACA
* * * * *
14264657 TGTACTTCTCAAATTCATTACGTCTCAAATTGGTCACAATAACTTGCAATGCCACCTCTAACAAA
318 TGTACGTCTCAAATTCATTACATCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAA
* * * *
14264722 GTCTCTTATCG-AAAAAGTTGAATCCAAATACTATAATAATATAG-GCAAATATGGTCAGTAGTA
383 GTCGCTTATCGAAAAAAATTGAATCCAAATACTATAATAATA-AGAGCAAATATGATAAGTAGTA
* * * * * *
14264785 ATATAAAACCAAAAAAAACAGTTAGCATTTTGAATA-AAAAAACGGTTATATTGTGGTTTTAG-C
447 ATATAAAA-CAAAAAAAACAATTAGAATTTTGAATATAAAAAACAGTTATATTCTAGTTTCAGTC
* * * * * *
14264848 CCTACTAATATTATTTTTCTTTTTTATT-TAAAATAAGATATATTCATAAGAATCTGAAAATTAC
511 CC-ACTAATATAAATTTTCTTTTTT-TTCTAAAATAAGACAAAATCACAAGAATCTGAAAATTAC
* * * * *
14264912 ACCTACGAAATTTAAACAAATATGACAAGGCTACCTATAGCCTTCAAGTTCCCTCCTTTCTTCCT
574 ACCTACGAAAATTAAACAAAAATCACAAGACTACCTATAGCCTTCAAGTTCCCTCATTTCTTCCT
14264977 TCAAC
639 TCAAC
14264982 TCACATCATC
Statistics
Matches: 545, Mismatches: 86, Indels: 24
0.83 0.13 0.04
Matches are distributed among these distances:
670 8 0.01
671 383 0.70
672 148 0.27
673 6 0.01
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.37
Consensus pattern (671 bp):
CCTTCAAGCTCCCTACTTTCTCCCTTCAACTCTCATCATCATATTTCCCATCCTTCTCATTGTTT
ACTTATTTTAGACTCTAAAAAGTTTGGAATAGAAACTCTTACATGGTCAGACCTTTTTATAACCG
CTTATAAAGCGATTCTCACACGTCTCGCACATTCTGATTAAGGAGAAAAGCTTTTTAAAATCATT
ATGACTCCATGGTATTACGGTCCTATTATATACCCTATTTGGCAGTTGATTTCCACTTAGGTATT
TTGTTCCCTGCTAATATTTACACGTTCTTAGAGAAATATGGTATTATAATAAAGACATGTACGTC
TCAAATTCATTACATCTCAAATTGATCACAATAACCTGCAATGCCACCTCCAACAAAGTCGCTTA
TCGAAAAAAATTGAATCCAAATACTATAATAATAAGAGCAAATATGATAAGTAGTAATATAAAAC
AAAAAAAACAATTAGAATTTTGAATATAAAAAACAGTTATATTCTAGTTTCAGTCCCACTAATAT
AAATTTTCTTTTTTTTCTAAAATAAGACAAAATCACAAGAATCTGAAAATTACACCTACGAAAAT
TAAACAAAAATCACAAGACTACCTATAGCCTTCAAGTTCCCTCATTTCTTCCTTCAACCTTCAAA
CTCCCTCATTTCTTCACTTCT
Found at i:14265622 original size:29 final size:29
Alignment explanation
Indices: 14265553--14265622 Score: 70
Period size: 29 Copynumber: 2.4 Consensus size: 29
14265543 CTGCCTTTAG
* * **
14265553 CCTTCAAGCTCCTTCCTTTCTTCTTTCAT
1 CCTTCAAGCTCCATCATTTCTTCACTCAT
* *
14265582 CATTCATA-CTCCATCATTTCTTCACTCTT
1 CCTTCA-AGCTCCATCATTTCTTCACTCAT
14265611 CCTTCAAGCTCC
1 CCTTCAAGCTCC
14265623 CAACTTTATT
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
28 1 0.03
29 30 0.94
30 1 0.03
ACGTcount: A:0.16, C:0.39, G:0.03, T:0.43
Consensus pattern (29 bp):
CCTTCAAGCTCCATCATTTCTTCACTCAT
Found at i:14267529 original size:671 final size:670
Alignment explanation
Indices: 14266224--14267536 Score: 1712
Period size: 670 Copynumber: 2.0 Consensus size: 670
14266214 CTGCCTTTAA
* * *
14266224 CCTTCAAGCTCCCTTCTTTTTTCCTTCTACTCTAATCATCATATTTCTCATCCTTCTCATTGTTT
1 CCTTCAAGCTCCCTACTTTTCTCCTTCTACTCTAATCATCATATTTCTCATCCTTCTCAATGTTT
* * *
14266289 ACTTCTTTTAGACTCTAAAATGTTTGGAATAAAAGCTTTTGCATGGTCAAACCTTTTTATAACCG
66 ACTTATTTTAGACTCTAAAATGTTTGGAATAAAAGCTCTTACATGGTCAAACCTTTTTATAACCG
* * * * * *
14266354 CTTATACAGTGATTCTCACACTTCTTGCACATTCTGATTTAGGAGAAATGCTTTTTAAAGTCATT
131 CTTATAAAGCGATTCTCACACGTCTCGCACATTCTGATTCAGGAGAAATACTTTTTAAAGTCATT
* * * * **
14266419 ATGACTTCATGGTTTTACGGTCCTATTATGTACCCTATTTGGCAGTTGATTTCCGCTTTGGTTAT
196 ATGACTCCATGGTATTACGGTCCTATTATGTACCCTATTTAGCAGTTGATTTCCACCCTGGTTAT
* *
14266484 TTGTTCTCTGCTAATATTTACACGTTTTTGGAGAAATATGGTATTATAGTAAAGACATGTACGTC
261 TTGTTCCCTGCTAATATTTACACGTTTTTGGAGAAATATGGTATTATAATAAAGACATGTACGTC
* *
14266549 TCAAATTCATTACATCTCAAATTGATCACAATAACCTACAATGCCACCTCCAACAATGTCTCTTA
326 TCAAATTCATTACATCTCAAACTGATCACAATAACCTACAATGCCACCTCCAACAAAGTCTCTTA
*
14266614 TTGAAAAAAATTGAATCAAAATACTATAATAATACGAGCAAATATGATAATTAGTAATATAAAAC
391 TCGAAAAAAATTGAATCAAAATACTATAATAATACGAGCAAATATGATAATTAGTAATATAAAAC
* * * * * *
14266679 AATAACAACAATTAGAATTTTTAATATAAAAAATAGTTTTATTCTAGTTTCAGTCCCACTAATAT
456 AATAAAAACAATTAGAATTTTGAATAGAAAAAACAGTTATATTCTAGTTTCAGCCCCACTAATAT
*
14266744 AAATTTTCTTTTTTTTTATAATAAGACAAAATCACAAGAATCTGAAAATTACACCTACGAAATTT
521 AAATTTTCTTTTTTTTTAAAATAAGACAAAATCACAAGAATCTGAAAATTACACCTACGAAATTT
* * * * * ** * *
14266809 ACAGAAAAATCACAAGACTGCTTTTAGTCTTCACGTTCCCTCATTTCTTCTTTCAACCTTCAAAC
586 AAACAAAAATCACAAGACTACTTATAGCCTTCAAATTCACTCATTTCTTCCTTCAACCTTCAAAC
14266874 TCCCTCCTTTCTTCACTCCT
651 TCCCTCCTTTCTTCACTCCT
* * * * *
14266894 CCTTCAAGCTCCCTAC-TTTCTCCTT-TAACCTCTCATCGTCCTATTTCTTATCCTTTTCAATGT
1 CCTTCAAGCTCCCTACTTTTCTCCTTCT-A-CTCTAATCATCATATTTCTCATCCTTCTCAATGT
* *
14266957 TTACTTATTTTCGACTCTAAAATGTTTGGAATAGAAA-CTCTTACATGGTC-AGCCTTTTTTATA
64 TTACTTATTTTAGACTCTAAAATGTTTGGAATA-AAAGCTCTTACATGGTCAAACC-TTTTTATA
* *
14267020 ACCGCTTATAAAGCGATTCTCTAC-CGTCTCGCACATTCTGCTTCAGGAGAAA-ACTTGTTTAGA
127 ACCGCTTATAAAGCGATTCTC-ACACGTCTCGCACATTCTGATTCAGGAGAAATACTT-TTTAAA
* * * * * *
14267083 GTCTTTATGAGTCCATGGTATTATGGTCCTATTCTGTTCCCTATTTAGCAGTTGGTTCTCCACCC
190 GTCATTATGACTCCATGGTATTACGGTCCTATTATGTACCCTATTTAGCAGTTGATT-TCCACCC
* * * *
14267148 TGGTTATTTGTTCCCTTG-TAATGTTTACACGTTTTTGGGGAAATATTGTCTTATAATAAAGACA
254 TGGTTATTTGTTCCC-TGCTAATATTTACACGTTTTTGGAGAAATATGGTATTATAATAAAGACA
* * * *
14267212 TGTACTTCTCAAATTCATTACGTCTCAAACTGGTCACAATAACCTGCAATGCCACCTCCAACAAA
318 TGTACGTCTCAAATTCATTACATCTCAAACTGATCACAATAACCTACAATGCCACCTCCAACAAA
* * * *
14267277 GTCTCTTATCG-AAAAAGTTGAATCCAAATACTATAATAATAC-AGGCAAA-ATGGTCATTAGTA
383 GTCTCTTATCGAAAAAAATTGAATCAAAATACTATAATAATACGA-GCAAATATGATAATTAGTA
* * * * * *
14267339 ATATAAAACCAA-AAAAACAGTTAGCATTTTGAATAGAAAAAACGGTTATATTGTGGTTTTAGCC
447 ATATAAAA-CAATAAAAACAATTAGAATTTTGAATAGAAAAAACAGTTATATTCTAGTTTCAGCC
* * * * *
14267403 CCACTAATATTATTTTTCTTTTTTTATTTAAAATAAGATAAATTCATAAGAATCTGAAAATTACA
511 CCACTAATATAAATTTTC-TTTTTT-TTTAAAATAAGACAAAATCACAAGAATCTGAAAATTACA
* * * *
14267468 CCTACGAAATTTAAACAAACATGACAAGGCTACTTATAGCCTTCAAATTCACTCCTTTCTTCCTT
574 CCTACGAAATTTAAACAAAAATCACAAGACTACTTATAGCCTTCAAATTCACTCATTTCTTCCTT
14267533 CAAC
639 CAAC
14267537 TCACATAATC
Statistics
Matches: 550, Mismatches: 81, Indels: 23
0.84 0.12 0.04
Matches are distributed among these distances:
668 1 0.00
669 91 0.17
670 232 0.42
671 224 0.41
672 2 0.00
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.37
Consensus pattern (670 bp):
CCTTCAAGCTCCCTACTTTTCTCCTTCTACTCTAATCATCATATTTCTCATCCTTCTCAATGTTT
ACTTATTTTAGACTCTAAAATGTTTGGAATAAAAGCTCTTACATGGTCAAACCTTTTTATAACCG
CTTATAAAGCGATTCTCACACGTCTCGCACATTCTGATTCAGGAGAAATACTTTTTAAAGTCATT
ATGACTCCATGGTATTACGGTCCTATTATGTACCCTATTTAGCAGTTGATTTCCACCCTGGTTAT
TTGTTCCCTGCTAATATTTACACGTTTTTGGAGAAATATGGTATTATAATAAAGACATGTACGTC
TCAAATTCATTACATCTCAAACTGATCACAATAACCTACAATGCCACCTCCAACAAAGTCTCTTA
TCGAAAAAAATTGAATCAAAATACTATAATAATACGAGCAAATATGATAATTAGTAATATAAAAC
AATAAAAACAATTAGAATTTTGAATAGAAAAAACAGTTATATTCTAGTTTCAGCCCCACTAATAT
AAATTTTCTTTTTTTTTAAAATAAGACAAAATCACAAGAATCTGAAAATTACACCTACGAAATTT
AAACAAAAATCACAAGACTACTTATAGCCTTCAAATTCACTCATTTCTTCCTTCAACCTTCAAAC
TCCCTCCTTTCTTCACTCCT
Found at i:14268174 original size:29 final size:29
Alignment explanation
Indices: 14268105--14268175 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 29
14268095 CTGGCTTTAG
* **
14268105 CCTTTAAGCTCCCTCATTTCTTCTTTCAT
1 CCTTCAAGCTCCCTCATTTCTTCACTCAT
*
14268134 CCTTCATA-CTCCCTCATTTCTTCACTCTT
1 CCTTCA-AGCTCCCTCATTTCTTCACTCAT
14268163 CCTTCAAGCTCCC
1 CCTTCAAGCTCCC
14268176 AACTTTATTC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 1 0.03
29 34 0.94
30 1 0.03
ACGTcount: A:0.14, C:0.41, G:0.03, T:0.42
Consensus pattern (29 bp):
CCTTCAAGCTCCCTCATTTCTTCACTCAT
Found at i:14270681 original size:29 final size:29
Alignment explanation
Indices: 14270612--14270682 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 29
14270602 CTGGCTTTAG
* **
14270612 CCTTTAAGCTCCCTCATTTCTTCTTTCAT
1 CCTTCAAGCTCCCTCATTTCTTCACTCAT
*
14270641 CCTTCATA-CTCCCTCATTTCTTCACTCTT
1 CCTTCA-AGCTCCCTCATTTCTTCACTCAT
14270670 CCTTCAAGCTCCC
1 CCTTCAAGCTCCC
14270683 AACTTTATTC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 1 0.03
29 34 0.94
30 1 0.03
ACGTcount: A:0.14, C:0.41, G:0.03, T:0.42
Consensus pattern (29 bp):
CCTTCAAGCTCCCTCATTTCTTCACTCAT
Found at i:14274446 original size:29 final size:29
Alignment explanation
Indices: 14274414--14274483 Score: 86
Period size: 29 Copynumber: 2.4 Consensus size: 29
14274404 GTCTTCATGT
**
14274414 TCCCTCCTTTCTTCTTTCAACCTTCAAAC
1 TCCCTCCTTTCTTCACTCAACCTTCAAAC
** *
14274443 TCCCTCCTTTCTTCACTCCTCCTTCAAGC
1 TCCCTCCTTTCTTCACTCAACCTTCAAAC
*
14274472 TCCCTACTTTCT
1 TCCCTCCTTTCT
14274484 CGCTTAACCT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.13, C:0.44, G:0.01, T:0.41
Consensus pattern (29 bp):
TCCCTCCTTTCTTCACTCAACCTTCAAAC
Found at i:14275091 original size:671 final size:671
Alignment explanation
Indices: 14273821--14275104 Score: 1715
Period size: 671 Copynumber: 1.9 Consensus size: 671
14273811 TTTCCCTCAA
*
14273821 CTCTCATCATCATATTTCTCATCCTTTTCATTGCTTAATTATTTTAGACTCTAAAATGTTTGGAA
1 CTCTCATCATCATATTTCTCATCATTTTCATTGCTTAATTATTTTAGACTCTAAAATGTTTGGAA
* * * * * * * * *
14273886 TAGAAACTTTTGCATGGTCAACCCTTTTTATAACTGCTTATACAGTGATTCTCACACTTCTTCTA
66 TAGAAACTCTTACATGGTCAACCCCTTTCATAACCGCTTATAAAGCGATTCTCACACGTCTTCCA
* * *
14273951 CATTCTGATTGAGGAGAAAAGCTTTTTAAAGCATTATAAGTCCATGGTTTTATGGTCCTATTATG
131 CATTCTGATTCAAGAGAAAAGCTTTTTAAAGCATTATAAGTCCATGGTATTATGGTCCTATTATG
* *
14274016 TACCCTATTTGGCAGTTGATTCTCCCCTTTGGTTATTTGTTCCCTGTTAATATTTACATGTTTTT
196 TACCCTATTTGGCAGTTGATTCTCCACTCTGGTTATTTGTTCCCTGTTAATATTTACATGTTTTT
14274081 GGAGAAATATGGTATTATAGTAAAGACATGTACGTCTCAAATTCATTACGTCTCAAATTAGTCAC
261 GGAGAAATATGGTATTATAGTAAAGACATGTACGTCTCAAATTCATTACGTCTCAAATTAGTCAC
* * *
14274146 CATAACTTGCAACACCACCTCCAACAATGTCTCTTATCGAAAAAAATTGAATCCAAATACTATAA
326 AATAACCTGCAACACCACCTCCAACAATGTCTCTTATCGAAAAAAACTGAATCCAAATACTATAA
* * * * ** *
14274211 TAATAAGAGCAAGTATGGTCATTAGTAATATAAAACCATAACAACAATTAGAATTTTTAATATAA
391 TAATAAGAGCAAATATGGTCATCAATAATATAAAACCAAAACAACAATTAGAATTTGGAATAGAA
* *
14274276 AAAACAATCTTATTGTGGTTTCAGTCCCACTAATATAATTTTTCTTTTTTTTCTAGAATAAGACA
456 AAAACAATCTTATTGTGGTTTCAGTCCCACTAATATAATTTTTCTTTTTGTTCTAAAATAAGACA
* * * *
14274341 AAATCACAAGAATTTGAAAATTACACCTAGGAAAATCACACAAAAATCACAAGACTGCCTTTAGT
521 AAATCACAAGAATTTGAAAATTACACCTACGAAAATCAAACAAAAATCACAAGACTACCTTTAGC
* *
14274406 CTTCATGTTCCCTCCTTTCTTCTTTCAACCTTCAAACTCCCTCCTTTCTTCACTCCTCCTTCAAG
586 CTTCAGGCTCCCTCCTTTCTTCTTTCAACCTTCAAACTCCCTCCTTTCTTCACTCCTCCTTCAAG
14274471 CTCCCTACTTTCTCGCTTAAC
651 CTCCCTACTTTCTCGCTTAAC
* * * * *
14274492 CTCTCATCATCATATTTCTTATCATTTTTATTGTTTACTTATTTTCGACTCTAAAATGTTTGGAA
1 CTCTCATCATCATATTTCTCATCATTTTCATTGCTTAATTATTTTAGACTCTAAAATGTTTGGAA
*
14274557 TAGAAACTCTTACATGGTCAGCCCCTTTCATAACCGCTTATAAAGCGATTCTCTAC-CGTC-TCA
66 TAGAAACTCTTACATGGTCAACCCCTTTCATAACCGCTTATAAAGCGATTCTC-ACACGTCTTC-
* * * * *
14274620 CACATTCTGCTTCAAGAGAAAAG-TTGTTTAAAGTCGTTATGAGTCTATGGTATTATGGTCTTAT
129 CACATTCTGATTCAAGAGAAAAGCTT-TTTAAAG-CATTATAAGTCCATGGTATTATGGTCCTAT
* * * * *
14274684 TCTGTTCCCTGTTTGGCATTTGATTCTCCACTCTGGTTATTTGTTCCCT-TGTAATGTTTACATG
192 TATGTACCCTATTTGGCAGTTGATTCTCCACTCTGGTTATTTGTTCCCTGT-TAATATTTACATG
* * * *
14274748 -TTTTGGGGAAATATTGTATTATAGTAAAGACATGTACTTCTCAAATTCATTACGTCTCAAATTG
256 TTTTTGGAGAAATATGGTATTATAGTAAAGACATGTACGTCTCAAATTCATTACGTCTCAAATTA
* ** * * *
14274812 GTCACAATAACCTGGAATGCCACCTCCAACAATGTCTCTTATCG-AAAAAGCTGGATCCAAATGC
321 GTCACAATAACCTGCAACACCACCTCCAACAATGTCTCTTATCGAAAAAAACTGAATCCAAATAC
* * *
14274876 TATAATAATATGAGCAAATATGGTTC-TCAATAATATAAAACCAAAACAACATTTAGCATTTGGA
386 TATAATAATAAGAGCAAATATGG-TCATCAATAATATAAAACCAAAACAACAATTAGAATTTGGA
* *** * *** *
14274940 ATAGAAAGAATGGT-TATATTGTGGTTTTAGTCTGTCTAATATTATTTTTCCTTTTTGTT-TAAA
450 ATAGAAAAAACAATCT-TATTGTGGTTTCAGTCCCACTAATATAATTTTT-CTTTTTGTTCTAAA
* * * * * *
14275003 ATAAGATAAAATCATAAGAATTCT-AAAATTACACCTACGAAAATTAAACAAAAAATCTCTAGGC
513 ATAAGACAAAATCACAAGAATT-TGAAAATTACACCTACGAAAATCAAAC-AAAAATCACAAGAC
14275067 TACCTTTAGCCTTCAGGCTCCCTCCTTTCTTCTTTCAA
576 TACCTTTAGCCTTCAGGCTCCCTCCTTTCTTCTTTCAA
14275105 TTCACATCAT
Statistics
Matches: 526, Mismatches: 77, Indels: 20
0.84 0.12 0.03
Matches are distributed among these distances:
669 1 0.00
670 154 0.29
671 289 0.55
672 82 0.16
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (671 bp):
CTCTCATCATCATATTTCTCATCATTTTCATTGCTTAATTATTTTAGACTCTAAAATGTTTGGAA
TAGAAACTCTTACATGGTCAACCCCTTTCATAACCGCTTATAAAGCGATTCTCACACGTCTTCCA
CATTCTGATTCAAGAGAAAAGCTTTTTAAAGCATTATAAGTCCATGGTATTATGGTCCTATTATG
TACCCTATTTGGCAGTTGATTCTCCACTCTGGTTATTTGTTCCCTGTTAATATTTACATGTTTTT
GGAGAAATATGGTATTATAGTAAAGACATGTACGTCTCAAATTCATTACGTCTCAAATTAGTCAC
AATAACCTGCAACACCACCTCCAACAATGTCTCTTATCGAAAAAAACTGAATCCAAATACTATAA
TAATAAGAGCAAATATGGTCATCAATAATATAAAACCAAAACAACAATTAGAATTTGGAATAGAA
AAAACAATCTTATTGTGGTTTCAGTCCCACTAATATAATTTTTCTTTTTGTTCTAAAATAAGACA
AAATCACAAGAATTTGAAAATTACACCTACGAAAATCAAACAAAAATCACAAGACTACCTTTAGC
CTTCAGGCTCCCTCCTTTCTTCTTTCAACCTTCAAACTCCCTCCTTTCTTCACTCCTCCTTCAAG
CTCCCTACTTTCTCGCTTAAC
Found at i:14276581 original size:671 final size:668
Alignment explanation
Indices: 14275233--14277020 Score: 2269
Period size: 671 Copynumber: 2.7 Consensus size: 668
14275223 TACCTTCTCG
** * *
14275233 CACATTCTATTTTAGGAGAAAAGCTGTTTAAAGTCTTTATGAGTCCATGGTATTAT-AGTCCTTT
1 CACATTCTGCTTTAGGAGAAAAGATGTTTAAAGTCTTTATGAGTCCATGGTATTATGA-TCCTAT
* * *
14275297 TATGTTCTTTATTTGGTAGTTGATTCTCC-TTTGGTTATTTGTTCCC-TGCTAATGTTTACACGG
65 TATGTTCCTTATTTGGTAGTTGATTCTCCTTTTGGTTATTTATTCCCTTG-TAATGTTTACACGT
* * * * *
14275360 TTTTGGGGAAATATGGGATTATAGTAAAGAGATGTACGTCTCAAATTCAGTACATCTAAAATTGA
129 TTTTGGGGAAATATGGTATTATAGTAAAGACATGTACGTCTCAAATTCATTACGTCTCAAATTG-
* * * * ***
14275425 T-AACAATAACCTGTAATGCCATCTCCAACAAAGTCTCTTATTGAAAAAATTGAAGATAAATACT
193 TCAA-AAT-ACATGCAATGCCACCTCCAACAAAGTCTCTTATCGAAAAAATTGAATCCAAATACT
*
14275489 ATAATAATACGAGCAAATATGGTGATTAGTAATATAAAACCATAACAACAATTAACATTTTCAAT
256 ATAATAATACGAGCAAATATGGTGATTAGTAATATAAAACCATAACAACAATTAGCATTTTCAAT
* * * ***
14275554 ATAAAAAATGGTTAGATTGTGGTTTTACTCTTGCTAATATAATTTTTC-TTTTT-TTTTAAATAA
321 ATAAAAAATGGTTATATTGTCGTTTTAGTCCCACTAATATAATTTTTCATTTTTATTTTAAATAA
* * * *
14275617 GACAAAAT-AGCAATAATCTGAAAATTACACCTATGAAAATTACACAAAAATCACAAGACTGCCT
386 GACAAAATCA-TAAAAATCTGAAAATTACACCTATGAAAATTACAAAAAAATCACAAGACTACCT
* * *
14275681 TTAGCCTTCAGGCTCCCTTCTTTCTTCTTTCAACCTTCAAACTCCCTCATTTCTTCACTCTTCCT
450 TTAGCCTTCAAGCTCCCTCCTTTCTTCTTTCAACCTTCAAACTCCCTCATTTCTACACTCTTCCT
** * **
14275746 TAAAGCTCCCTAATTTCTTCCTTAACCTCTCATCATCGTATTTGTCATCGTTTTCATTGTTTACT
515 TAAAGCTCCCTAATTTCTTCCTTAACCTCTCATCATCAAATTTCTCATCCCTTTCATTGTTTACT
* *
14275811 TATTTTTGACTCTAAAATGTTTAGAATAGAAACTCTTGCATGGTCAGCCCTTTTTAAAACCACTT
580 TATTTTGGACTCTAAAATGTTTAGAATAGAAACTCTTGCATGGTCAGCCCTTTCTAAAACCACTT
* * * * *
14275876 ACACAGCGATTCTCTATTGTCTCG
645 ACACAACAATTCTCTACTGTCCCA
*
14275900 CACATTCTGCTTTAGGAGAAAAGATGTTTAAAGTCTTTATGAGTTCATGGTATTATGATCCTATT
1 CACATTCTGCTTTAGGAGAAAAGATGTTTAAAGTCTTTATGAGTCCATGGTATTATGATCCTATT
*
14275965 ATATTCCTTATTTGGTAGTTGATTCTCCTATTTGGTTATTTATTCCCTTGTAATGTTTACACGTT
66 ATGTTCCTTATTTGGTAGTTGATTCTCCT-TTTGGTTATTTATTCCCTTGTAATGTTTACACGTT
** * * *
14276030 TTTGGGGAAATATAATATTACAGCAAAGACAAGTACGTCTCAAATTCATTACGTCTCAAATTGGT
130 TTTGGGGAAATATGGTATTATAGTAAAGACATGTACGTCTCAAATTCATTACGTCTCAAATT-GT
* * *
14276095 CATAAATACATGCAATACTAGCTCCAACAAAGTCTCTTATCGAAAAAATTGAATCCAAATACTAT
194 CA-AAATACATGCAATGCCACCTCCAACAAAGTCTCTTATCGAAAAAATTGAATCCAAATACTAT
* *
14276160 AATTATACGAGCAAATATGGTGATTAGTAATATAAAACCATAACAACAGTTAGCATTTTCAATAT
258 AATAATACGAGCAAATATGGTGATTAGTAATATAAAACCATAACAACAATTAGCATTTTCAATAT
* * * *
14276225 AAAAAATGGATATATTGTCATTTTAGTCCCACTAATATAATTTTTCATTTTTAGTTAAAATAAGA
323 AAAAAATGGTTATATTGTCGTTTTAGTCCCACTAATATAATTTTTCATTTTTATTTTAAATAAGA
* * * * *
14276290 CAAAATCATAAAAATTTGAAAATTACATCAATGAAAATTACATAAAAATCACAAGGCTACCTTTA
388 CAAAATCATAAAAATCTGAAAATTACACCTATGAAAATTACAAAAAAATCACAAGACTACCTTTA
* * * * * *
14276355 GCCTTCAAGTTCCCTCCTTTCTTCTTTCATCCTTCATACTCCCTCATTTCTACACTTTTTCTTCA
453 GCCTTCAAGCTCCCTCCTTTCTTCTTTCAACCTTCAAACTCCCTCATTTCTACACTCTTCCTTAA
**
14276420 AGCTCCCTGTTTTAC-TCCTTCAA-CTCTCATCATCAAATTTCTCATCCCTTTCATTGTTTACTT
518 AGCTCCCTAATTT-CTTCCTT-AACCTCTCATCATCAAATTTCTCATCCCTTTCATTGTTTACTT
* * * ** *
14276483 ATTTTGGACTCTATAATGTTTGGAATATAAACTCTTGCATGGTCAGCCCTTTCTATTACCGCTTA
581 ATTTTGGACTCTAAAATGTTTAGAATAGAAACTCTTGCATGGTCAGCCCTTTCTAAAACCACTTA
* * * *
14276548 TATAACAATTTTGTACCT-TCCCA
646 CACAACAATTCTCTA-CTGTCCCA
* * *
14276571 TACATTCTGCTTTAGGAGAAAAGTTGTTTAAAGTCTTTATGAGTCCATGGCATTATGATCCTATT
1 CACATTCTGCTTTAGGAGAAAAGATGTTTAAAGTCTTTATGAGTCCATGGTATTATGATCCTATT
* * * ** *
14276636 ATGTTCCCTATTTGGCAATTGATTCTCCTCTCTT-GTTATTTATTCCCTACTAATGTTTACAAGT
66 ATGTTCCTTATTTGGTAGTTGATTCTCCT-T-TTGGTTATTTATTCCCTTGTAATGTTTACACGT
*** *
14276700 TTTTGAAAAAATATGGTATTATAGTAAAGACATGTACGTCTC-AA---ATT--G-ATC--A----
129 TTTTGGGGAAATATGGTATTATAGTAAAGACATGTACGTCTCAAATTCATTACGTCTCAAATTGT
* * * *
14276752 CAATA-ACTTGCAATGCCACCT-CAAAAAAGTCTCTTATCGAAAAAATTGGATCCAAATACTATA
194 CAAAATACATGCAATGCCACCTCCAACAAAGTCTCTTATCGAAAAAATTGAATCCAAATACTATA
* *
14276815 ATAATACGATCAAATATGGTGATTAGTAATATAAAACCATAACAACACTTAGCATTTTCAATATA
259 ATAATACGAGCAAATATGGTGATTAGTAATATAAAACCATAACAACAATTAGCATTTTCAATATA
* * *
14276880 AAAAATGGTTATGTTGTTGTTTTAGTCCCACTAATATAATTTTTAATTTTTATTTTAAATAAGAC
324 AAAAATGGTTATATTGTCGTTTTAGTCCCACTAATATAATTTTTCATTTTTATTTTAAATAAGAC
* * * * *
14276945 AAAATCATAAGAATCTGAAAATTACACCTATGAAAATTACAAAAAAATCACAAGATTGCCTATAA
389 AAAATCATAAAAATCTGAAAATTACACCTATGAAAATTACAAAAAAATCACAAGACTACCTTTAG
14277010 CCTTCAAGCTC
454 CCTTCAAGCTC
14277021 TATCCTTTTT
Statistics
Matches: 976, Mismatches: 131, Indels: 41
0.85 0.11 0.04
Matches are distributed among these distances:
654 225 0.23
655 12 0.01
656 2 0.00
657 2 0.00
662 1 0.00
664 2 0.00
665 1 0.00
667 87 0.09
668 1 0.00
669 232 0.24
670 14 0.01
671 390 0.40
672 7 0.01
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.37
Consensus pattern (668 bp):
CACATTCTGCTTTAGGAGAAAAGATGTTTAAAGTCTTTATGAGTCCATGGTATTATGATCCTATT
ATGTTCCTTATTTGGTAGTTGATTCTCCTTTTGGTTATTTATTCCCTTGTAATGTTTACACGTTT
TTGGGGAAATATGGTATTATAGTAAAGACATGTACGTCTCAAATTCATTACGTCTCAAATTGTCA
AAATACATGCAATGCCACCTCCAACAAAGTCTCTTATCGAAAAAATTGAATCCAAATACTATAAT
AATACGAGCAAATATGGTGATTAGTAATATAAAACCATAACAACAATTAGCATTTTCAATATAAA
AAATGGTTATATTGTCGTTTTAGTCCCACTAATATAATTTTTCATTTTTATTTTAAATAAGACAA
AATCATAAAAATCTGAAAATTACACCTATGAAAATTACAAAAAAATCACAAGACTACCTTTAGCC
TTCAAGCTCCCTCCTTTCTTCTTTCAACCTTCAAACTCCCTCATTTCTACACTCTTCCTTAAAGC
TCCCTAATTTCTTCCTTAACCTCTCATCATCAAATTTCTCATCCCTTTCATTGTTTACTTATTTT
GGACTCTAAAATGTTTAGAATAGAAACTCTTGCATGGTCAGCCCTTTCTAAAACCACTTACACAA
CAATTCTCTACTGTCCCA
Found at i:14277986 original size:81 final size:81
Alignment explanation
Indices: 14277876--14278037 Score: 261
Period size: 81 Copynumber: 2.0 Consensus size: 81
14277866 ATGTGACCAT
* * *
14277876 GGTATTATGGTCCTATTTTGTTCCCTATTTGGCTGTTGATTCTCCACTTTGGTTATTTGTTCCCT
1 GGTATTATAGTCCTATTTTGTTCCCTATTTGGCAGTTGATTCTCCACTATGGTTATTTGTTCCCT
14277941 TGTAATGTTTACACAG
66 TGTAATGTTTACACAG
* * *
14277957 GGTATTCTAGTCCTATTTTGTTCCTTATTTGGCAGTTGATTCTTCACTATGGTTATTTGTTCCCT
1 GGTATTATAGTCCTATTTTGTTCCCTATTTGGCAGTTGATTCTCCACTATGGTTATTTGTTCCCT
*
14278022 TGTAATGTTTGCACAG
66 TGTAATGTTTACACAG
14278038 TTTTGGGGAA
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 74 1.00
ACGTcount: A:0.15, C:0.18, G:0.19, T:0.48
Consensus pattern (81 bp):
GGTATTATAGTCCTATTTTGTTCCCTATTTGGCAGTTGATTCTCCACTATGGTTATTTGTTCCCT
TGTAATGTTTACACAG
Done.