Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 51 of 196
Found at i:14280862 original size:13 final size:13
Alignment explanation
Indices: 14280844--14280869 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14280834 ATATGTGATT
14280844 ATTCATCTACAAA
1 ATTCATCTACAAA
14280857 ATTCATCTACAAA
1 ATTCATCTACAAA
14280870 TTGTTATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (13 bp):
ATTCATCTACAAA
Found at i:14283016 original size:42 final size:42
Alignment explanation
Indices: 14282926--14283036 Score: 109
Period size: 42 Copynumber: 2.6 Consensus size: 42
14282916 CCTCATAAAC
* * * * *
14282926 AACTTCTAAACCATCTCCAACATCCTATAAACCTTCACCAGT
1 AACTTTTAAACCATCTCTAACACCCCATAAACCTTCACCAGA
* *
14282968 AGCTTTTAAACCATCTCTAACACCCCATAAACCTTCATC-GAA
1 AACTTTTAAACCATCTCTAACACCCCATAAACCTTCACCAG-A
14283010 AACTTTT-AACCTATCTCTGTAACACCC
1 AACTTTTAAACC-ATCTC--TAACACCC
14283037 TTAACCTATC
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
41 5 0.09
42 44 0.77
44 8 0.14
ACGTcount: A:0.34, C:0.34, G:0.04, T:0.28
Consensus pattern (42 bp):
AACTTTTAAACCATCTCTAACACCCCATAAACCTTCACCAGA
Found at i:14286842 original size:25 final size:25
Alignment explanation
Indices: 14286808--14286902 Score: 136
Period size: 25 Copynumber: 3.8 Consensus size: 25
14286798 TTGTACATGT
* *
14286808 ATGCTCACACGAGCTGCGAATCAGA
1 ATGCTCACACGAGCTGTGAATTAGA
*
14286833 ATGCTCACACGAGCAGTGAATTAGA
1 ATGCTCACACGAGCTGTGAATTAGA
14286858 ATGCTCACACGAGCTGTGAATTAGA
1 ATGCTCACACGAGCTGTGAATTAGA
* * *
14286883 ATGGTCATACAAGCTGTGAA
1 ATGCTCACACGAGCTGTGAA
14286903 AATGGGCCTG
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 63 1.00
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (25 bp):
ATGCTCACACGAGCTGTGAATTAGA
Found at i:14298450 original size:17 final size:17
Alignment explanation
Indices: 14298428--14298462 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
14298418 GTGCACATTA
14298428 TCATTGCATCTTT-ATTT
1 TCATTGCAT-TTTAATTT
14298445 TCATTGCATTTTAATTT
1 TCATTGCATTTTAATTT
14298462 T
1 T
14298463 AGTGCATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.18
17 14 0.82
ACGTcount: A:0.20, C:0.14, G:0.06, T:0.60
Consensus pattern (17 bp):
TCATTGCATTTTAATTT
Found at i:14299016 original size:11 final size:11
Alignment explanation
Indices: 14299000--14299024 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14298990 CCTTATTCAC
14299000 AAAAAAAGAAA
1 AAAAAAAGAAA
14299011 AAAAAAAGAAA
1 AAAAAAAGAAA
14299022 AAA
1 AAA
14299025 GGAGACATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAGAAA
Found at i:14300482 original size:625 final size:626
Alignment explanation
Indices: 14299292--14300542 Score: 2414
Period size: 625 Copynumber: 2.0 Consensus size: 626
14299282 CTTGAGGACA
14299292 AGTAAAAACTCTAGTTTGAGGGTGTGTGATAATACTAGAAAGAACATATGTTTTCTCCCTACTTA
1 AGTAAAAACTCTAGTTTGAGGGTGTGTGATAATACTAGAAAGAACATATGTTTTCTCCCTACTTA
14299357 TTGGTTAATTTGTCCCCATTTAGTCATCTTTAGCACATATTTTAGCAGTTTTAGTTCAGTAAATT
66 TTGGTTAATTTGTCCCCATTTAGTCATCTTTAGCACATATTTTAGCAGTTTTAGTTCAGTAAATT
14299422 GTATTTTATAACTCAGTGGATCTTAGGCTATTTATCCTTAATTTTGTCATGTTTTGGTATCGACA
131 GTATTTTATAACTCAGTGGATCTTAGGCTATTTATCCTTAATTTTGTCATGTTTTGGTATCGACA
* * *
14299487 TCGTTGCATGAGTATTTCTAGATTGTGCCCAAAATTTTCACCGCACCTGATAGTTGTCTGAATAA
196 TCATTGCATGAGTATTTCTAGATTGTGCCCAAAATTTTCACCCCACCTGATAGTTGTCCGAATAA
14299552 GAAGAGAAATGTATGAGCTGTCTAGTTTGCTATAATCAGCTTGTACGTTCAGAGGCAGCATGATA
261 GAAGAGAAATGTATGAGCTGTCTAGTTTGCTATAATCAGCTTGTACGTTCAGAGGCAGCATGATA
14299617 CTGAAAAAAGGACACCTGTGCTATTTGGAAGAATATAAATATTCACGTGAAAAGGAAAAAAAGGG
326 CTGAAAAAAGGACACCTGTGCTATTTGGAAGAATATAAATATTCACGTGAAAAGGAAAAAAAGGG
14299682 AGGCTTTTTAGGAAGTAGTATCTTCTTCAACCTATCTTTTGAAGCTTTTCGGCTATGGCAGCTTA
391 AGGCTTTTTAGGAAGTAGTATCTTCTTCAACCTATCTTTTGAAGCTTTTCGGCTATGGCAGCTTA
*
14299747 AGTCTCCTATGAGTGAACCGATGTGAAAGGGACGCAGATCAGCTCCTGACAAAGAGCCCTAAGTG
456 AGTCTCCTATGAGTGAACCGATGTGAAAGGGACGCAGATCAGCTCCTGAAAAAGAGCCCTAAGTG
*
14299812 CGACATAAGAGGGAATGGAGAGATTCAAGTCTAGATTTTCTAGGAATAGTATTCTCCACTTGTTT
521 CGACACAAGAGGGAATGGAGAGATTCAAGTCTAGATTTTCTAGGAATAGTATTCTCCACTTGTTT
*
14299877 CGTTTATATTTCTTTTCTAAACGATGGTGATTACTTTTTAT
586 CATTTATATTTCTTTTCTAAACGATGGTGATTACTTTTTAT
14299918 AGTAAAAACTCTAGTTTGAGGGTGTGTGATAATACTAGAAAGAACATATGTTTTCTCCCTACTTA
1 AGTAAAAACTCTAGTTTGAGGGTGTGTGATAATACTAGAAAGAACATATGTTTTCTCCCTACTTA
*
14299983 TTGGTTAATTTGTCCCCATTTAGTTATCTTTAGCACATATTTTAGCAGTTTTAGTTCAGTAAATT
66 TTGGTTAATTTGTCCCCATTTAGTCATCTTTAGCACATATTTTAGCAGTTTTAGTTCAGTAAATT
*
14300048 GTATTTTATAACTCAGTGGATCTTAGGCTATTTATCCTTAATTTTGTCATGTTTTGGTATTGACA
131 GTATTTTATAACTCAGTGGATCTTAGGCTATTTATCCTTAATTTTGTCATGTTTTGGTATCGACA
14300113 TCATTGCATGAGTATTTCTAGATTGTGCCCAAAATTTTCACCCCACCTGATAGTTGTCCGAATAA
196 TCATTGCATGAGTATTTCTAGATTGTGCCCAAAATTTTCACCCCACCTGATAGTTGTCCGAATAA
14300178 GAAGAGAAATGTATGAGCTGTCTAG-TTGCTATAATCAGCTTGTACGTTCAGAGGCAGCATGATA
261 GAAGAGAAATGTATGAGCTGTCTAGTTTGCTATAATCAGCTTGTACGTTCAGAGGCAGCATGATA
14300242 CTGAAAAAAGGACACCTGTGCTATTTGGAAGAATATAAATATTCACGTGAAAAGGAAAAAAAGGG
326 CTGAAAAAAGGACACCTGTGCTATTTGGAAGAATATAAATATTCACGTGAAAAGGAAAAAAAGGG
*
14300307 AGGCTTTTTAGGAAGTATTATCTTCTTCAACCTATCTTTTGAAGCTTTTCGGCTATGGCAGCTTA
391 AGGCTTTTTAGGAAGTAGTATCTTCTTCAACCTATCTTTTGAAGCTTTTCGGCTATGGCAGCTTA
14300372 AGTCTCCTATGAGTGAACCGATGTGAAAGGGACGCAGATCAGCTCCTGAAAAAGAGCCCTAAGTG
456 AGTCTCCTATGAGTGAACCGATGTGAAAGGGACGCAGATCAGCTCCTGAAAAAGAGCCCTAAGTG
14300437 CGACACAAGAGGGAATGGAGAGATTCAAGTCTAGATTTTCTAGGAATAGTATTCTCCACTTGTTT
521 CGACACAAGAGGGAATGGAGAGATTCAAGTCTAGATTTTCTAGGAATAGTATTCTCCACTTGTTT
14300502 CATTTATATTTCTTTTCTAAACGATGGTGATTACTTTTTAT
586 CATTTATATTTCTTTTCTAAACGATGGTGATTACTTTTTAT
14300543 TTCATGTTTG
Statistics
Matches: 616, Mismatches: 9, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
625 336 0.55
626 280 0.45
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (626 bp):
AGTAAAAACTCTAGTTTGAGGGTGTGTGATAATACTAGAAAGAACATATGTTTTCTCCCTACTTA
TTGGTTAATTTGTCCCCATTTAGTCATCTTTAGCACATATTTTAGCAGTTTTAGTTCAGTAAATT
GTATTTTATAACTCAGTGGATCTTAGGCTATTTATCCTTAATTTTGTCATGTTTTGGTATCGACA
TCATTGCATGAGTATTTCTAGATTGTGCCCAAAATTTTCACCCCACCTGATAGTTGTCCGAATAA
GAAGAGAAATGTATGAGCTGTCTAGTTTGCTATAATCAGCTTGTACGTTCAGAGGCAGCATGATA
CTGAAAAAAGGACACCTGTGCTATTTGGAAGAATATAAATATTCACGTGAAAAGGAAAAAAAGGG
AGGCTTTTTAGGAAGTAGTATCTTCTTCAACCTATCTTTTGAAGCTTTTCGGCTATGGCAGCTTA
AGTCTCCTATGAGTGAACCGATGTGAAAGGGACGCAGATCAGCTCCTGAAAAAGAGCCCTAAGTG
CGACACAAGAGGGAATGGAGAGATTCAAGTCTAGATTTTCTAGGAATAGTATTCTCCACTTGTTT
CATTTATATTTCTTTTCTAAACGATGGTGATTACTTTTTAT
Found at i:14307126 original size:9 final size:10
Alignment explanation
Indices: 14307112--14307154 Score: 52
Period size: 10 Copynumber: 4.2 Consensus size: 10
14307102 ATTAGTATAC
14307112 AAAT-AAGTA
1 AAATAAAGTA
*
14307121 AAATAAAATA
1 AAATAAAGTA
14307131 AAATAAAGTAA
1 AAATAAAGT-A
14307142 TAAATAAAGTA
1 -AAATAAAGTA
14307153 AA
1 AA
14307155 GAAAAAAACA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
9 4 0.14
10 14 0.48
11 2 0.07
12 9 0.31
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.21
Consensus pattern (10 bp):
AAATAAAGTA
Found at i:14308901 original size:13 final size:13
Alignment explanation
Indices: 14308883--14308908 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14308873 CGAGGCATAA
14308883 CGTATGACATGTG
1 CGTATGACATGTG
14308896 CGTATGACATGTG
1 CGTATGACATGTG
14308909 GTTCTTTGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.31
Consensus pattern (13 bp):
CGTATGACATGTG
Found at i:14321019 original size:28 final size:28
Alignment explanation
Indices: 14320988--14321216 Score: 162
Period size: 28 Copynumber: 8.2 Consensus size: 28
14320978 AAAAGATGCT
* *
14320988 TTTGTGGTGAACCTATGAAGGGAAAGCC
1 TTTGTGGTGAACCTCTGAAAGGAAAGCC
* * **
14321016 TTTGTGGCGAACCTCT-AGAAGGATAGAT
1 TTTGTGGTGAACCTCTGA-AAGGAAAGCC
* ** * ** * *
14321044 TTTATGGCAAACCTTTGAAATAAAATCT
1 TTTGTGGTGAACCTCTGAAAGGAAAGCC
14321072 TTTGTGGTGAA-CTCCT-AGAAGG-AAGCC
1 TTTGTGGTGAACCT-CTGA-AAGGAAAGCC
* *
14321099 TTTGTGGCGAACCTCTAAAAGGAAAGCC
1 TTTGTGGTGAACCTCTGAAAGGAAAGCC
* ** *
14321127 TTTGTAGAAAACTTCTGAAAGGAAAGCC
1 TTTGTGGTGAACCTCTGAAAGGAAAGCC
* *
14321155 TTTGTGGTGAACCTTTGAAAGGAAAGAC
1 TTTGTGGTGAACCTCTGAAAGGAAAGCC
* * *
14321183 TTTATGGTAAACCTCTTAAA-GAAAGCC
1 TTTGTGGTGAACCTCTGAAAGGAAAGCC
*
14321210 CTTGTGG
1 TTTGTGG
14321217 CAATCTTAAT
Statistics
Matches: 153, Mismatches: 41, Indels: 15
0.73 0.20 0.07
Matches are distributed among these distances:
27 34 0.22
28 118 0.77
29 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (28 bp):
TTTGTGGTGAACCTCTGAAAGGAAAGCC
Found at i:14321146 original size:83 final size:85
Alignment explanation
Indices: 14320985--14321207 Score: 217
Period size: 83 Copynumber: 2.7 Consensus size: 85
14320975 TGAAAAAGAT
* * *
14320985 GCTTTTGTGGTGAA-CCTATGAAGGGAAAGCCTTTGTGGCGAACCTCTAGAAGGATAGATTTTAT
1 GCTTTTGTGGTGAACCCTATGAAGGGAAAGCCTTTGTGGCGAACCTCTAAAAGGAAAGACTTTAT
* * *
14321049 GGCAAACCTTTGAAATAAAA
66 AGCAAAACTTTGAAAGAAAA
* * *
14321069 TCTTTTGTGGTGAACTCCTA-GAA-GG-AAGCCTTTGTGGCGAACCTCTAAAAGGAAAGCCTTTG
1 GCTTTTGTGGTGAAC-CCTATGAAGGGAAAGCCTTTGTGGCGAACCTCTAAAAGGAAAGACTTTA
*
14321131 TAG-AAAACTTCTGAAAGGAAA
65 TAGCAAAACTT-TGAAAGAAAA
* * * * * ** *
14321152 GCCTTTGTGGTGAA-CCTTTGAAAGGAAAGACTTTATGGTAAACCTCTTAAA-GAAAG
1 GCTTTTGTGGTGAACCCTATGAAGGGAAAGCCTTTGTGGCGAACCTCTAAAAGGAAAG
14321208 CCCTTGTGGC
Statistics
Matches: 115, Mismatches: 18, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
81 3 0.03
82 9 0.08
83 61 0.53
84 35 0.30
85 3 0.03
86 4 0.03
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (85 bp):
GCTTTTGTGGTGAACCCTATGAAGGGAAAGCCTTTGTGGCGAACCTCTAAAAGGAAAGACTTTAT
AGCAAAACTTTGAAAGAAAA
Found at i:14321229 original size:27 final size:27
Alignment explanation
Indices: 14321199--14321262 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
14321189 GTAAACCTCT
14321199 TAAAGAAAGCCCTTGTGGCAATCTT-AA
1 TAAAGAAAGCCCTTGTGGCAAT-TTGAA
*
14321226 TAAATAAAGCCCTTGTGGCAATTTGAA
1 TAAAGAAAGCCCTTGTGGCAATTTGAA
*
14321253 TAAAGGAAGC
1 TAAAGAAAGC
14321263 TTTGTGGTGA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
26 2 0.06
27 31 0.94
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (27 bp):
TAAAGAAAGCCCTTGTGGCAATTTGAA
Found at i:14322961 original size:31 final size:31
Alignment explanation
Indices: 14322923--14322981 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
14322913 TTCGTCATAA
14322923 TTAATATTTGATTTT-ACAAACCAAAAAATCC
1 TTAATATTTGATTTTGA-AAACCAAAAAATCC
*
14322954 TTAATATTTGATTTTGAAGACCAAAAAA
1 TTAATATTTGATTTTGAAAACCAAAAAA
14322982 ATCCCTGTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 25 0.96
32 1 0.04
ACGTcount: A:0.46, C:0.12, G:0.07, T:0.36
Consensus pattern (31 bp):
TTAATATTTGATTTTGAAAACCAAAAAATCC
Found at i:14338522 original size:18 final size:18
Alignment explanation
Indices: 14338467--14338522 Score: 55
Period size: 18 Copynumber: 3.3 Consensus size: 18
14338457 TTTAAAATGG
14338467 TAAATGATTAATTACACT
1 TAAATGATTAATTACACT
* * *
14338485 TAAAT--TAAATAAAAC-
1 TAAATGATTAATTACACT
*
14338500 AAAATGATTAATTACACT
1 TAAATGATTAATTACACT
14338518 TAAAT
1 TAAAT
14338523 TAATTTTCTT
Statistics
Matches: 27, Mismatches: 8, Indels: 6
0.66 0.20 0.15
Matches are distributed among these distances:
15 4 0.15
16 7 0.26
17 7 0.26
18 9 0.33
ACGTcount: A:0.54, C:0.09, G:0.04, T:0.34
Consensus pattern (18 bp):
TAAATGATTAATTACACT
Found at i:14349176 original size:47 final size:46
Alignment explanation
Indices: 14349119--14349283 Score: 146
Period size: 47 Copynumber: 3.6 Consensus size: 46
14349109 CATACATACT
*
14349119 CATATTTTTTTTATATTTTATAATTTATATACATATCTATATATATA
1 CATATATTTTTTATATTTTATAATTTATATACATA-CTATATATATA
* * * * *
14349166 CATATATTTTTTCT-TCTCACGAATATATATATACATACT-TATACAT-
1 CATATATTTTTTATATTTTA-TAAT-T-TATATACATACTATATATATA
*
14349212 -ATATATTTTTTATATTTTATAATTT-T-TATATAC-ATATATATA
1 CATATATTTTTTATATTTTATAATTTATATACATACTATATATATA
14349254 CATATATATCTTTTTATATTTTTATAATTT
1 C--ATATAT-TTTTTATA-TTTTATAATTT
14349284 TATTCATTTT
Statistics
Matches: 95, Mismatches: 12, Indels: 22
0.74 0.09 0.17
Matches are distributed among these distances:
41 12 0.13
42 1 0.01
43 1 0.01
44 1 0.01
45 21 0.22
46 14 0.15
47 32 0.34
48 3 0.03
49 10 0.11
ACGTcount: A:0.35, C:0.08, G:0.01, T:0.56
Consensus pattern (46 bp):
CATATATTTTTTATATTTTATAATTTATATACATACTATATATATA
Found at i:14349242 original size:45 final size:46
Alignment explanation
Indices: 14349120--14349284 Score: 169
Period size: 45 Copynumber: 3.6 Consensus size: 46
14349110 ATACATACTC
* *
14349120 ATATTTTTTTTATATTTTATAA--TTTATATACATATCTATATATAT
1 ATATATTTTTTATATTTTATAATTTTTATATACATA-CTATATACAT
* * * * * *
14349165 ACATATATTTTTTCT-TCTCACGAATATATATATACATACT-TATACAT
1 --ATATATTTTTTATATTTTA-TAATTTTTATATACATACTATATACAT
14349212 ATATATTTTTTATATTTTATAATTTTTATATACATA-TATATACAT
1 ATATATTTTTTATATTTTATAATTTTTATATACATACTATATACAT
14349257 ATATATCTTTTTATATTTTTATAATTTT
1 ATATAT-TTTTTATA-TTTTATAATTTT
14349285 ATTCATTTTC
Statistics
Matches: 98, Mismatches: 13, Indels: 14
0.78 0.10 0.11
Matches are distributed among these distances:
44 1 0.01
45 39 0.40
46 14 0.14
47 31 0.32
48 2 0.02
49 11 0.11
ACGTcount: A:0.35, C:0.08, G:0.01, T:0.56
Consensus pattern (46 bp):
ATATATTTTTTATATTTTATAATTTTTATATACATACTATATACAT
Found at i:14349253 original size:10 final size:10
Alignment explanation
Indices: 14349238--14349262 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14349228 TTATAATTTT
14349238 TATATACATA
1 TATATACATA
14349248 TATATACATA
1 TATATACATA
14349258 TATAT
1 TATAT
14349263 CTTTTTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (10 bp):
TATATACATA
Found at i:14351916 original size:24 final size:22
Alignment explanation
Indices: 14351865--14351906 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
14351855 AAATCTTATA
*
14351865 TATATTACTAAAATATTTATTT
1 TATATTACTAAAATATTAATTT
14351887 TATATTA-TAAAATATTAATT
1 TATATTACTAAAATATTAATT
14351907 ATTGAATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (22 bp):
TATATTACTAAAATATTAATTT
Found at i:14352810 original size:19 final size:19
Alignment explanation
Indices: 14352786--14352826 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
14352776 CGTATACTTG
14352786 AATAAACAAGATGGAATAC
1 AATAAACAAGATGGAATAC
* *
14352805 AATAAAGAAGGTGGAATAC
1 AATAAACAAGATGGAATAC
14352824 AAT
1 AAT
14352827 TGATATTGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.56, C:0.07, G:0.20, T:0.17
Consensus pattern (19 bp):
AATAAACAAGATGGAATAC
Found at i:14354945 original size:26 final size:26
Alignment explanation
Indices: 14354916--14354975 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
14354906 TTCTTCATTT
14354916 GCCACACA-ACCTCCATTTCTTAAATC
1 GCCACA-AGACCTCCATTTCTTAAATC
* * *
14354942 GCCACTAAGGCTTCCATTTCTTATATC
1 GCCAC-AAGACCTCCATTTCTTAAATC
14354969 GCCACAA
1 GCCACAA
14354976 AGGCTTCAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.28, C:0.35, G:0.08, T:0.28
Consensus pattern (26 bp):
GCCACAAGACCTCCATTTCTTAAATC
Found at i:14354962 original size:27 final size:27
Alignment explanation
Indices: 14354927--14354991 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
14354917 CCACACAACC
*
14354927 TCCATTTCTTAAATCGCCACTAAGGCT
1 TCCATTTCTTAAATCGCCACAAAGGCT
*
14354954 TCCATTTCTTATATCGCCACAAAGGCT
1 TCCATTTCTTAAATCGCCACAAAGGCT
*
14354981 TCAATTTCTTA
1 TCCATTTCTTA
14354992 GATCACCATA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.26, C:0.28, G:0.09, T:0.37
Consensus pattern (27 bp):
TCCATTTCTTAAATCGCCACAAAGGCT
Found at i:14364981 original size:47 final size:49
Alignment explanation
Indices: 14364898--14365001 Score: 124
Period size: 47 Copynumber: 2.1 Consensus size: 49
14364888 TTGCACATTG
* * *
14364898 TCACATATCACACACCGAAGCCATAGTCTAGCTATGGTCTTACACGGAAA
1 TCACATAT-ACACACCGAAGCCATAGTCCAGATATGGTCTTACACGAAAA
* *
14364948 -CACATAT-CACACCGATGCCATA-TCCCAGATATGGTCTTACCCGAAAA
1 TCACATATACACACCGAAGCCATAGT-CCAGATATGGTCTTACACGAAAA
14364995 TCACATA
1 TCACATA
14365002 ATCATATTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
46 1 0.02
47 33 0.70
48 6 0.13
49 7 0.15
ACGTcount: A:0.35, C:0.30, G:0.13, T:0.22
Consensus pattern (49 bp):
TCACATATACACACCGAAGCCATAGTCCAGATATGGTCTTACACGAAAA
Found at i:14366264 original size:22 final size:22
Alignment explanation
Indices: 14366236--14366290 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
14366226 TATGCACTAT
*
14366236 TAAACAGAGAGCACTAAAGTGC
1 TAAACAGAGAGCACGAAAGTGC
* *
14366258 TATACAGAGAGCACGAATGTGC
1 TAAACAGAGAGCACGAAAGTGC
14366280 TAAACAGAGAG
1 TAAACAGAGAG
14366291 TGTGCTAGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.44, C:0.16, G:0.25, T:0.15
Consensus pattern (22 bp):
TAAACAGAGAGCACGAAAGTGC
Found at i:14366327 original size:25 final size:25
Alignment explanation
Indices: 14366292--14366412 Score: 206
Period size: 25 Copynumber: 4.8 Consensus size: 25
14366282 AACAGAGAGT
14366292 GTGCTAGTAATCAGAGAGCACTGAC
1 GTGCTAGTAATCAGAGAGCACTGAC
* *
14366317 GTGCTAATAATCAGAGAGCACTTAC
1 GTGCTAGTAATCAGAGAGCACTGAC
*
14366342 GTGCTTGTAATCAGAGAGCACTGAC
1 GTGCTAGTAATCAGAGAGCACTGAC
*
14366367 GTGCTAGTAATCAGAGAGCACTTAC
1 GTGCTAGTAATCAGAGAGCACTGAC
14366392 GTGCTAGTAATCAGAGAGCAC
1 GTGCTAGTAATCAGAGAGCAC
14366413 GCTAAACTCC
Statistics
Matches: 89, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 89 1.00
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (25 bp):
GTGCTAGTAATCAGAGAGCACTGAC
Found at i:14384097 original size:45 final size:41
Alignment explanation
Indices: 14384038--14384147 Score: 107
Period size: 45 Copynumber: 2.6 Consensus size: 41
14384028 TTTGGTTCGC
* *
14384038 TGTATTGGATTAGAGGTGTAATAGCAAATCAACTGTTTGGTT
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGG-T
* * ***
14384080 GAATGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGT
1 ---TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
14384123 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
14384148 TAATGGAAAA
Statistics
Matches: 55, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
39 20 0.36
40 2 0.04
43 1 0.02
44 11 0.20
45 21 0.38
ACGTcount: A:0.32, C:0.05, G:0.29, T:0.34
Consensus pattern (41 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
Found at i:14384322 original size:14 final size:16
Alignment explanation
Indices: 14384291--14384324 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
14384281 AATAATTATT
14384291 AAATATATTTTAATTA
1 AAATATATTTTAATTA
14384307 AAATATA-TTTAA-TA
1 AAATATATTTTAATTA
14384321 AAAT
1 AAAT
14384325 TCTTAATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.33
15 5 0.28
16 7 0.39
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
AAATATATTTTAATTA
Found at i:14384542 original size:26 final size:25
Alignment explanation
Indices: 14384485--14384542 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 25
14384475 TATGAATTTG
*
14384485 TATAATTTAAAATAATAATTATTCA
1 TATAATTTAAAATAATAATAATTCA
*
14384510 TATAATTTAATAATAATTATAATTTCA
1 TATAATTTAA-AATAATAATAA-TTCA
14384537 TA-AATT
1 TATAATT
14384543 CTTGATAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 10 0.34
26 13 0.45
27 6 0.21
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (25 bp):
TATAATTTAAAATAATAATAATTCA
Found at i:14384566 original size:87 final size:89
Alignment explanation
Indices: 14384460--14384659 Score: 275
Period size: 88 Copynumber: 2.3 Consensus size: 89
14384450 TAATTATAAC
* * *
14384460 TAATAAATTATATTTTATGAATTTGTAT-AATTTAAAATAA-TAATTATT-CATATAATTTAATA
1 TAATAAATT-TCTTATATGAATTT-TATCAATTTAAAATAATTAA-TATTAAATATAATTTAATA
*
14384522 ATAAT-TATAATTTCATAAATTCTTGA
63 ATAATATATAATTTCATAAATTCTTAA
* *
14384548 TAATAAATTTCTTATATGAA-TTTATCAATTTAAAATAATTAATATTAAATATAATTTAATAGTG
1 TAATAAATTTCTTATATGAATTTTATCAATTTAAAATAATTAATATTAAATATAATTTAATAATA
14384612 ATATATAATTTCATAAATTCTTAA
66 ATATATAATTTCATAAATTCTTAA
14384636 TAATAAATGTTCTTATATGAATTT
1 TAATAAAT-TTCTTATATGAATTT
14384660 ACTAAAATAA
Statistics
Matches: 100, Mismatches: 6, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
85 3 0.03
86 18 0.18
87 28 0.28
88 37 0.37
89 12 0.12
90 2 0.02
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (89 bp):
TAATAAATTTCTTATATGAATTTTATCAATTTAAAATAATTAATATTAAATATAATTTAATAATA
ATATATAATTTCATAAATTCTTAA
Found at i:14387736 original size:33 final size:33
Alignment explanation
Indices: 14387697--14387773 Score: 154
Period size: 33 Copynumber: 2.3 Consensus size: 33
14387687 ATTATAAAGC
14387697 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
14387730 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
14387763 ATGTATAATTG
1 ATGTATAATTG
14387774 TTGGTGTATG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.43
Consensus pattern (33 bp):
ATGTATAATTGACCTAAAATTAATTGTTGGTGT
Found at i:14387773 original size:18 final size:18
Alignment explanation
Indices: 14387750--14387791 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
14387740 GACCTAAAAT
14387750 TAATTGTTGGTGTATGTA
1 TAATTGTTGGTGTATGTA
14387768 TAATTGTTGGTGTATGTA
1 TAATTGTTGGTGTATGTA
14387786 TAATTG
1 TAATTG
14387792 ACCTAAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (18 bp):
TAATTGTTGGTGTATGTA
Found at i:14387776 original size:51 final size:51
Alignment explanation
Indices: 14387717--14387820 Score: 199
Period size: 51 Copynumber: 2.0 Consensus size: 51
14387707 GACCTAAAAT
*
14387717 TAATTGTTGGTGTATGTATAATTGACCTAAAATTAATTGTTGGTGTATGTA
1 TAATTGTTGGTGTATGTATAATTGACCTAAAATTAATTGTTGGTATATGTA
14387768 TAATTGTTGGTGTATGTATAATTGACCTAAAATTAATTGTTGGTATATGTA
1 TAATTGTTGGTGTATGTATAATTGACCTAAAATTAATTGTTGGTATATGTA
14387819 TA
1 TA
14387821 CTTCAAGTTT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.31, C:0.04, G:0.20, T:0.45
Consensus pattern (51 bp):
TAATTGTTGGTGTATGTATAATTGACCTAAAATTAATTGTTGGTATATGTA
Found at i:14387921 original size:37 final size:37
Alignment explanation
Indices: 14387866--14387952 Score: 122
Period size: 37 Copynumber: 2.4 Consensus size: 37
14387856 GTATAAATAT
* * *
14387866 ATTGATTAGTTCATTAAAGCATGTTCAAAGTCCT-CAC
1 ATTGATTAGTTTAATAAAGCATGTTCAAAGT-CTGAAC
*
14387903 ATTGATTAGTTTAATAAAGCATGTTCAAAGTTTGAAC
1 ATTGATTAGTTTAATAAAGCATGTTCAAAGTCTGAAC
14387940 ATTGATTAGTTTA
1 ATTGATTAGTTTA
14387953 TTTATTTATG
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
36 1 0.02
37 44 0.98
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.39
Consensus pattern (37 bp):
ATTGATTAGTTTAATAAAGCATGTTCAAAGTCTGAAC
Found at i:14389209 original size:71 final size:69
Alignment explanation
Indices: 14389071--14389209 Score: 181
Period size: 71 Copynumber: 2.0 Consensus size: 69
14389061 ATAAAGATCT
* *
14389071 AGTTTCATATTCTACTGACTAACAAATCAAGAACAATTTCCAGCAAACAATCAAAACAACTGCCA
1 AGTTTCATATTCTACTCACTAACAAATAAAGAACAATTTCCAGCAAACAATCAAAACAACTGCCA
14389136 GAAA
66 GAAA
* * * * *
14389140 AGTTTCATCTTCTACTCACTAACAAATTAAAATAACATTTTCCAGCAGACTATCAAAACAA-TGT
1 AGTTTCATATTCTACTCACTAACAAA-T-AAAGAACAATTTCCAGCAAACAATCAAAACAACTG-
14389204 CCAGAA
63 CCAGAA
14389210 CAAACCAACA
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
69 24 0.40
70 3 0.05
71 33 0.55
ACGTcount: A:0.44, C:0.23, G:0.08, T:0.25
Consensus pattern (69 bp):
AGTTTCATATTCTACTCACTAACAAATAAAGAACAATTTCCAGCAAACAATCAAAACAACTGCCA
GAAA
Found at i:14390319 original size:36 final size:37
Alignment explanation
Indices: 14390226--14390357 Score: 169
Period size: 36 Copynumber: 3.6 Consensus size: 37
14390216 GCAAATCGAC
* *
14390226 AGAAAC-TGTGAGCAAATCGGCCGAAAAAGAAAAGAAA
1 AGAAACATGGGAGCAAATCGGCAG-AAAAGAAAAGAAA
*
14390263 AGAAACGAGGGGAGCAAATCGGCAGAAAAGAAAAGAAA
1 AGAAAC-ATGGGAGCAAATCGGCAGAAAAGAAAAGAAA
* *
14390301 ATAAAC-TGGGAGCAAATCGGCAGAAAAGAAAAGCAA
1 AGAAACATGGGAGCAAATCGGCAGAAAAGAAAAGAAA
* *
14390337 AGAAACAAGGAAGCAAATCGG
1 AGAAACATGGGAGCAAATCGG
14390358 ATGAAGGTAG
Statistics
Matches: 83, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
36 33 0.40
37 18 0.22
38 18 0.22
39 14 0.17
ACGTcount: A:0.54, C:0.13, G:0.27, T:0.06
Consensus pattern (37 bp):
AGAAACATGGGAGCAAATCGGCAGAAAAGAAAAGAAA
Found at i:14391452 original size:20 final size:19
Alignment explanation
Indices: 14391412--14391456 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
14391402 CAAGAATATC
* *
14391412 AAATAAACAAGAATATGAA
1 AAATAAACAAAAAAATGAA
*
14391431 AACATAAACAAAAAAATTAA
1 AA-ATAAACAAAAAAATGAA
14391451 AAATAA
1 AAATAA
14391457 GAAAGGAAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.73, C:0.07, G:0.04, T:0.16
Consensus pattern (19 bp):
AAATAAACAAAAAAATGAA
Found at i:14391838 original size:10 final size:10
Alignment explanation
Indices: 14391794--14391831 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
14391784 GTATATGGAA
14391794 ATAAATATAT
1 ATAAATATAT
14391804 AT-AA-ATAT
1 ATAAATATAT
*
14391812 ATACATATAT
1 ATAAATATAT
14391822 ATAAATATAT
1 ATAAATATAT
14391832 GAAAATAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
8 6 0.25
9 3 0.12
10 15 0.62
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (10 bp):
ATAAATATAT
Found at i:14393421 original size:44 final size:40
Alignment explanation
Indices: 14393365--14393474 Score: 114
Period size: 44 Copynumber: 2.6 Consensus size: 40
14393355 TTCAGTCTAC
* * *
14393365 CTCACTGCAACTTCAGGAGGATAAGACTTGCTTGCTGAGTCTG
1 CTCACTGTAACTTCAGGAGGATAAGACTAG-ATGC-GA-TCTG
14393408 CTCCACTGTAACTTCAGG-GAGATAAGACTAGATGCGATCTG
1 CT-CACTGTAACTTCAGGAG-GATAAGACTAGATGCGATCTG
* * *
14393449 CTCTCTGTAACTTCAGAAAGATAAGA
1 CTCACTGTAACTTCAGGAGGATAAGA
14393475 TCAAAGGTTT
Statistics
Matches: 58, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
40 20 0.34
41 6 0.10
42 2 0.03
43 6 0.10
44 24 0.41
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (40 bp):
CTCACTGTAACTTCAGGAGGATAAGACTAGATGCGATCTG
Found at i:14393782 original size:132 final size:132
Alignment explanation
Indices: 14393541--14394131 Score: 984
Period size: 132 Copynumber: 4.5 Consensus size: 132
14393531 CTGCAACTTC
* * * * * *
14393541 AGGGAGATAAGATTTGCCATCTTCAACCTACTCTGCTGCTGCTCAGGGAGATAAGGCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGC
*
14393606 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCAACTACTGC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGC
14393671 TT
131 TT
* *
14393673 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGTTCAGGGAGACAAGGCTTTGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGC
*
14393738 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTTGATCTGCTCCACTACTGC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGC
14393803 TT
131 TT
* * * **
14393805 AGGGAGATAAGATCTACAATCTTCAACCTACTCTGTTGCTGCTCAGGGAGATGAGGCTTGGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGC
*
14393870 TTAAATTTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGC
14393935 TT
131 TT
*
14393937 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTTGTGGC
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGC
* *
14394002 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTTGATCTGCTCCTCTACTGC
66 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGC
14394067 TT
131 TT
* * *
14394069 AGGGAGATAATATCTACAATCTTCAACCTTCTCCACTGCTGCTCAAGGAGACAAGGCTTGGTG
1 AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTG
14394132 TTTCACCGGT
Statistics
Matches: 427, Mismatches: 32, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 427 1.00
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (132 bp):
AGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGC
TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGC
TT
Found at i:14393813 original size:44 final size:44
Alignment explanation
Indices: 14393633--14394078 Score: 159
Period size: 44 Copynumber: 10.1 Consensus size: 44
14393623 TATCTTGGAA
* * *
14393633 AGATAAGATTTGCCGTCTTTGATCTGCTCAACTACTGCTTAGGG
1 AGATAAGATTTGTCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * * * * * * *
14393677 AGATAAGATCT-ACAATCTTCAACCTTCTCCGCTGCTG-TTCAGGG
1 AGATAAGATTTGTC-GTCTTTAATCTGCTCCACTACTGCTT-AGGG
* * * * *
14393721 AGACAAGGCTTTGT-GGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTTGTCGTCTTTAATCTGC-T-CCACTACTGCTTAGG-G
*
14393765 AGATAAGATTTGTCGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGTCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * * * * * *** * *
14393809 AGATAAGATCT-ACAATCTTCAACCTACTCTGTTGCTGCTCAGGG
1 AGATAAGATTTGTC-GTCTTTAATCTGCTCCACTACTGCTTAGGG
* * * * * * *
14393853 AGATGAGGCTTGGT-GGCTTAAATTTGCTTCCCACTA-T-CTT-GGAA
1 AGAT-AAGATTTGTCGTCTTTAATCTGC-T-CCACTACTGCTTAGG-G
* *
14393897 AGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGTCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * * * * * * * *
14393941 AGATAAGATCT-ACAATCTTCAACCTTCTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGTC-GTCTTTAATCTGCTCCACTACTGCTTAGGG
* * * * *
14393985 AGACAAGGCTTTGT-GGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTTGTCGTCTTTAATCTGC-T-CCACTACTGCTTAGG-G
* *
14394029 AGATAAGATTTGTCGTCTTTGATCTGCTCCTCTACTGCTTAGGG
1 AGATAAGATTTGTCGTCTTTAATCTGCTCCACTACTGCTTAGGG
14394073 AGATAA
1 AGATAA
14394079 TATCTACAAT
Statistics
Matches: 274, Mismatches: 96, Indels: 64
0.63 0.22 0.15
Matches are distributed among these distances:
42 17 0.06
43 34 0.12
44 190 0.69
45 23 0.08
46 10 0.04
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.33
Consensus pattern (44 bp):
AGATAAGATTTGTCGTCTTTAATCTGCTCCACTACTGCTTAGGG
Found at i:14406103 original size:20 final size:19
Alignment explanation
Indices: 14406063--14406107 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
14406053 CAAGAATATC
* *
14406063 AAATAAACAAGAATATGAAA
1 AAATAAACAAAAAAAT-AAA
*
14406083 ACATAAACAAAAAAATAAA
1 AAATAAACAAAAAAATAAA
14406102 AAATAA
1 AAATAA
14406108 GAAAGGAAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.76, C:0.07, G:0.04, T:0.13
Consensus pattern (19 bp):
AAATAAACAAAAAAATAAA
Found at i:14406463 original size:12 final size:12
Alignment explanation
Indices: 14406444--14406477 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
14406434 GTATATGGAA
14406444 ATAAATATATAT
1 ATAAATATATAT
*
14406456 ATACATATATAT
1 ATAAATATATAT
14406468 ATAAATATAT
1 ATAAATATAT
14406478 GAAAATAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (12 bp):
ATAAATATATAT
Found at i:14410915 original size:45 final size:45
Alignment explanation
Indices: 14410820--14410908 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
14410810 AAAATGGTAG
*
14410820 AGAAAGCTAACCTTTTCTAATGATGTTTCTATGATCGAAAAAACA
1 AGAAAGCTAACCTTTTCTAATGACGTTTCTATGATCGAAAAAACA
*
14410865 AGAAAGCTAACTTTTTCTAATGACGTTTCTATGATCGAAAAAAC
1 AGAAAGCTAACCTTTTCTAATGACGTTTCTATGATCGAAAAAAC
14410909 TTGAAAGTCA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.31
Consensus pattern (45 bp):
AGAAAGCTAACCTTTTCTAATGACGTTTCTATGATCGAAAAAACA
Found at i:14430933 original size:11 final size:11
Alignment explanation
Indices: 14430917--14430942 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
14430907 ACTTGAATGG
14430917 AAATAAAAATA
1 AAATAAAAATA
14430928 AAATAAAAATA
1 AAATAAAAATA
14430939 AAAT
1 AAAT
14430943 TACATAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (11 bp):
AAATAAAAATA
Found at i:14436534 original size:22 final size:21
Alignment explanation
Indices: 14436492--14436535 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
14436482 ATGCATATTG
*
14436492 AGTTATAATATGTAATGCATT
1 AGTTATAAAATGTAATGCATT
14436513 AGTTAGTAAAATGT-ATGTCATT
1 AGTTA-TAAAATGTAATG-CATT
14436535 A
1 A
14436536 TATGTGGTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.39, C:0.05, G:0.16, T:0.41
Consensus pattern (21 bp):
AGTTATAAAATGTAATGCATT
Found at i:14437197 original size:39 final size:40
Alignment explanation
Indices: 14437102--14437319 Score: 228
Period size: 39 Copynumber: 5.7 Consensus size: 40
14437092 TTGAATGATG
*
14437102 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC--AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
14437140 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
14437181 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAG-TACTAA-
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
14437218 TCCGGG-TAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
14437255 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
14437294 AACCGGGCTATGT-CCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
14437320 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 7, Indels: 24
0.84 0.04 0.13
Matches are distributed among these distances:
35 9 0.06
36 20 0.12
37 12 0.08
38 10 0.06
39 63 0.39
40 43 0.27
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:14437314 original size:114 final size:116
Alignment explanation
Indices: 14437102--14437319 Score: 284
Period size: 114 Copynumber: 1.9 Consensus size: 116
14437092 TTGAATGATG
* *
14437102 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACATATCCGGACTAAGATCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACAAATCCGGACTAAGATCCGAAGGCATTTG
*
14437167 TGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTACTAA
66 TGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGTGCGAGTACTAA
* * **
14437218 TCCGGG-TAAG-CCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGAC-AAATCCGGACTAAGAT-CCGAAGGCATT
* * *
14437279 TGTGCGAGTTACT-ATAACCGGGCTATGTCCGAAGGCATTTG
64 TGTGCGAGATACTAAT-ACCGGGCTAAGCCCGAAGGCATTTG
14437320 AACGAGGAGC
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
113 8 0.09
114 71 0.80
115 4 0.04
116 6 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (116 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGTGCGAGTACTAA
Found at i:14437350 original size:78 final size:75
Alignment explanation
Indices: 14437154--14437352 Score: 201
Period size: 75 Copynumber: 2.6 Consensus size: 75
14437144 GGACTAAGAT
* * *
14437154 CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCT-AAGCCCGAAGGCATTTGTGCGAGTACTA
1 CCGAAGGCA-TTGTGCGAG-TGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTACTA
*
14437217 ATCCGGGTAAGC
64 AACCGGGTAAGC
* *
14437229 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
1 CCGAAGGCATTGTGCGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAG-TACTA-
* *
14437294 AACCGGGCTATGT
64 AACCGGG-TAAGC
* *
14437307 CCGAAGGCATT-TGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTGTG--CGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
14437353 TACGTGATTT
Statistics
Matches: 105, Mismatches: 11, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
73 1 0.01
74 21 0.20
75 30 0.29
76 5 0.05
77 8 0.08
78 29 0.28
79 11 0.10
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (75 bp):
CCGAAGGCATTGTGCGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTACTAAA
CCGGGTAAGC
Found at i:14444800 original size:22 final size:21
Alignment explanation
Indices: 14444758--14444801 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
14444748 ATGCATATTG
*
14444758 AGTTATAATATGTAATGCATT
1 AGTTATAAAATGTAATGCATT
14444779 AGTTAGTAAAATGT-ATGTCATT
1 AGTTA-TAAAATGTAATG-CATT
14444801 A
1 A
14444802 TATGTGGTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.39, C:0.05, G:0.16, T:0.41
Consensus pattern (21 bp):
AGTTATAAAATGTAATGCATT
Found at i:14445467 original size:39 final size:40
Alignment explanation
Indices: 14445366--14445589 Score: 282
Period size: 40 Copynumber: 5.7 Consensus size: 40
14445356 TTGAATGATG
*
14445366 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
14445405 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
14445446 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
14445485 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
14445524 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
14445563 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
14445590 AACGAGGAGC
Statistics
Matches: 167, Mismatches: 10, Indels: 14
0.87 0.05 0.07
Matches are distributed among these distances:
39 75 0.45
40 78 0.47
41 13 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:14445553 original size:79 final size:81
Alignment explanation
Indices: 14445366--14445589 Score: 291
Period size: 79 Copynumber: 2.8 Consensus size: 81
14445356 TTGAATGATG
* * *
14445366 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATATCCGGGCTAAGACCCGAAGGCA
*
14445428 TTTGTGCGAGATACTAAT
64 TTTGTGCGAGATACTAAA
14445446 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
*
14445508 TGTGCGAGTTACTAAA
66 TGTGCGAGATACTAAA
* * * * *
14445524 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
14445588 TG
66 TG
14445590 AACGAGGAGC
Statistics
Matches: 129, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
78 37 0.29
79 54 0.42
80 37 0.29
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:14445611 original size:79 final size:79
Alignment explanation
Indices: 14445366--14445622 Score: 233
Period size: 79 Copynumber: 3.3 Consensus size: 79
14445356 TTGAATGATG
* * * *
14445366 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
14445428 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
14445446 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
14445510 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
14445524 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
14445588 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
14445604 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
14445623 TACGTGATTT
Statistics
Matches: 154, Mismatches: 15, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
77 1 0.01
78 36 0.23
79 68 0.44
80 48 0.31
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:14447939 original size:23 final size:23
Alignment explanation
Indices: 14447910--14447954 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
14447900 GGGTCAGTCA
14447910 AAAAAAGGTAAGTTAATTAATCC
1 AAAAAAGGTAAGTTAATTAATCC
*
14447933 AAAAAAGGTATGTTAATTAATC
1 AAAAAAGGTAAGTTAATTAATC
14447955 AAAGGTCCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.51, C:0.07, G:0.13, T:0.29
Consensus pattern (23 bp):
AAAAAAGGTAAGTTAATTAATCC
Found at i:14449396 original size:36 final size:36
Alignment explanation
Indices: 14449349--14449419 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
14449339 GGTATGACTG
14449349 CATTGTTTCTTGGCAAAGCTATATTTCTTTGTTCTA
1 CATTGTTTCTTGGCAAAGCTATATTTCTTTGTTCTA
14449385 CATTGTTTCTTGGCAAAGCTATATTTCTTTGTTCT
1 CATTGTTTCTTGGCAAAGCTATATTTCTTTGTTCT
14449420 CGAAGTCTCC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.51
Consensus pattern (36 bp):
CATTGTTTCTTGGCAAAGCTATATTTCTTTGTTCTA
Found at i:14458427 original size:43 final size:43
Alignment explanation
Indices: 14458313--14458441 Score: 133
Period size: 43 Copynumber: 3.0 Consensus size: 43
14458303 AACTCATACA
*
14458313 ATGCCAACGTCCCAGACGTGGTCTT--ACATGCAATCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACATG-AA-CACATATCG
* * *
14458356 ATGCC-ACTATCCTAGACAGGGTCTTACACATGAACACA-AGTCG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACATGAACACATA-TCG
*
14458399 ATGCCAACGTCCCCGACATGGTCTTACACGAT-AACACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACAC-ATGAACACATATCG
14458442 GAAATCCTAT
Statistics
Matches: 71, Mismatches: 8, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
42 3 0.04
43 56 0.79
44 7 0.10
45 5 0.07
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACATGAACACATATCG
Found at i:14460432 original size:43 final size:43
Alignment explanation
Indices: 14460312--14460450 Score: 185
Period size: 41 Copynumber: 3.3 Consensus size: 43
14460302 TTTTTAAAAT
* *
14460312 AAACGTCGCTAAAGGTCATAACCTTTAGCGGCGCTTTCCTCAC
1 AAACGTCGCTAAAGATCATAACCTTTAGCGACGCTTTCCTCAC
** * *
14460355 AAACACCGCT--AGACCATAACCTTTAGCGACGCTTTCCCCAC
1 AAACGTCGCTAAAGATCATAACCTTTAGCGACGCTTTCCTCAC
* *
14460396 AAACGTCGCTAAAGATCATGACCTTTAGCGACGCTTT-GTCAC
1 AAACGTCGCTAAAGATCATAACCTTTAGCGACGCTTTCCTCAC
14460438 AAACGTCGCTAAA
1 AAACGTCGCTAAA
14460451 AACATAAGTT
Statistics
Matches: 82, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
41 35 0.43
42 16 0.20
43 31 0.38
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (43 bp):
AAACGTCGCTAAAGATCATAACCTTTAGCGACGCTTTCCTCAC
Found at i:14464147 original size:19 final size:18
Alignment explanation
Indices: 14464125--14464169 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
14464115 AATTATAAAA
14464125 TTTAGTTTTT-TATTTCTAT
1 TTTA-TTTTTGTATTT-TAT
14464144 TTTATTTTTGTATTTTATT
1 TTTATTTTTGTATTTTA-T
14464163 TTTATTT
1 TTTATTT
14464170 CTTATAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.16, C:0.02, G:0.04, T:0.78
Consensus pattern (18 bp):
TTTATTTTTGTATTTTAT
Found at i:14464157 original size:13 final size:13
Alignment explanation
Indices: 14464141--14464165 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14464131 TTTTTATTTC
14464141 TATTTTATTTTTG
1 TATTTTATTTTTG
14464154 TATTTTATTTTT
1 TATTTTATTTTT
14464166 ATTTCTTATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.04, T:0.80
Consensus pattern (13 bp):
TATTTTATTTTTG
Found at i:14464594 original size:21 final size:22
Alignment explanation
Indices: 14464543--14464648 Score: 69
Period size: 21 Copynumber: 4.9 Consensus size: 22
14464533 GACCCCTGAC
14464543 TCCCTAAACCCCT-AACTCTT-AA
1 TCCCT-AACCCCTAAAC-CTTAAA
*
14464565 CCCCTAACCCCTAAACCTTAAA
1 TCCCTAACCCCTAAACCTTAAA
* * *
14464587 TCCC-AACCCTTAAATCAT-AA
1 TCCCTAACCCCTAAACCTTAAA
* * * *
14464607 TCCCTAATCCATAATCCCTAAA
1 TCCCTAACCCCTAAACCTTAAA
*
14464629 TCCAT-ACTCCCTAAACCTTA
1 TCCCTAAC-CCCTAAACCTTA
14464649 CACTATTAAC
Statistics
Matches: 64, Mismatches: 15, Indels: 10
0.72 0.17 0.11
Matches are distributed among these distances:
20 6 0.09
21 31 0.48
22 27 0.42
ACGTcount: A:0.35, C:0.40, G:0.00, T:0.25
Consensus pattern (22 bp):
TCCCTAACCCCTAAACCTTAAA
Found at i:14464630 original size:15 final size:15
Alignment explanation
Indices: 14464597--14464643 Score: 71
Period size: 15 Copynumber: 3.3 Consensus size: 15
14464587 TCCCAACCCT
14464597 TAAAT-CATAATCCC
1 TAAATCCATAATCCC
14464611 T-AATCCATAATCCC
1 TAAATCCATAATCCC
*
14464625 TAAATCCATACTCCC
1 TAAATCCATAATCCC
14464640 TAAA
1 TAAA
14464644 CCTTACACTA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
13 3 0.10
14 11 0.37
15 16 0.53
ACGTcount: A:0.40, C:0.32, G:0.00, T:0.28
Consensus pattern (15 bp):
TAAATCCATAATCCC
Found at i:14465018 original size:19 final size:19
Alignment explanation
Indices: 14464975--14465012 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
14464965 ATTGAATTTT
14464975 AATT-AATATAAATAAACA
1 AATTAAATATAAATAAACA
14464993 AATTAAATAGTAAATAAACA
1 AATTAAATA-TAAATAAACA
14465013 GATAAAATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
19 4 0.22
20 10 0.56
ACGTcount: A:0.66, C:0.05, G:0.03, T:0.26
Consensus pattern (19 bp):
AATTAAATATAAATAAACA
Found at i:14465020 original size:20 final size:19
Alignment explanation
Indices: 14464979--14465020 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
14464969 AATTTTAATT
*
14464979 AATATAAATAAACAAATTA
1 AATATAAATAAACAAATAA
*
14464998 AATAGTAAATAAACAGATAA
1 AATA-TAAATAAACAAATAA
14465018 AAT
1 AAT
14465021 GTTTTTACAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.24
Consensus pattern (19 bp):
AATATAAATAAACAAATAA
Found at i:14465138 original size:41 final size:41
Alignment explanation
Indices: 14465030--14465225 Score: 261
Period size: 41 Copynumber: 4.8 Consensus size: 41
14465020 TGTTTTTACA
* * * *
14465030 GCGCTTTTTCAGAAACGCCGCTAAAGCCCCAAGCATTAGTAG
1 GCGCCTTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAG-CG
* *
14465072 GCG-CTTTTCCAAAAACGTCGCTAAAGCCCCGAGCATTAGTG
1 GCGCCTTTT-CAAAAACGCCGCTAAAGCCCCGAGCATTAGCG
*
14465113 GTGCCTTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCG
1 GCGCCTTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCG
* *
14465154 GCGCCTTTTCAAAAACGCAGCTAAAGCCCCGAGCCTTAGCG
1 GCGCCTTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCG
* *
14465195 GCGCCTTCTCAAAAATGCCGC-AAAGCCCCGA
1 GCGCCTTTTCAAAAACGCCGCTAAAGCCCCGA
14465226 AAGGTCAAAA
Statistics
Matches: 138, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
40 10 0.07
41 93 0.67
42 35 0.25
ACGTcount: A:0.28, C:0.32, G:0.21, T:0.19
Consensus pattern (41 bp):
GCGCCTTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCG
Found at i:14479123 original size:19 final size:19
Alignment explanation
Indices: 14479099--14479147 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
14479089 GTCGTGTTTC
14479099 CAGCCCGTGTGAAATGGCA
1 CAGCCCGTGTGAAATGGCA
* *
14479118 CAGCCCTTGCGAAATGGCA
1 CAGCCCGTGTGAAATGGCA
14479137 CAGCCCGTGTG
1 CAGCCCGTGTG
14479148 GCTCCTAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.22, C:0.31, G:0.31, T:0.16
Consensus pattern (19 bp):
CAGCCCGTGTGAAATGGCA
Found at i:14480416 original size:33 final size:31
Alignment explanation
Indices: 14480288--14480416 Score: 95
Period size: 33 Copynumber: 4.1 Consensus size: 31
14480278 TTAAAATTAA
*
14480288 AAAATTAAAAAA-A-TTAAAAATTTATTTCT
1 AAAATTAAAAAATATTTAAAACTTTATTTCT
* * * *
14480317 AATATTTAAAAGTA-TTAAATATATATTATTTCT
1 AAAATTAAAAAATATTTAAA-A-CT-TTATTTCT
* * *
14480350 AAAATTAAAAACTATTTAAAACTCTATTCCT
1 AAAATTAAAAAATATTTAAAACTTTATTTCT
*
14480381 AAAA-TAAAAAATAATTTTTTAAACTTTATTTCT
1 AAAATTAAAAAAT-A--TTTAAAACTTTATTTCT
14480414 AAA
1 AAA
14480417 CTTATTACCT
Statistics
Matches: 79, Mismatches: 13, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
29 9 0.11
30 13 0.16
31 12 0.15
32 3 0.04
33 37 0.47
34 5 0.06
ACGTcount: A:0.51, C:0.07, G:0.01, T:0.41
Consensus pattern (31 bp):
AAAATTAAAAAATATTTAAAACTTTATTTCT
Found at i:14482528 original size:29 final size:29
Alignment explanation
Indices: 14482428--14482526 Score: 134
Period size: 29 Copynumber: 3.5 Consensus size: 29
14482418 AAAAATAAAA
*
14482428 ATTTATCAAAACATTACAACTTTTTTTTT
1 ATTTATCAAAATATTACAACTTTTTTTTT
14482457 ATTTA-CTAAAATATTACAA--TTTTTTTT
1 ATTTATC-AAAATATTACAACTTTTTTTTT
*
14482484 ATTTACCAAAATATATA-AACTTTTTTTTT
1 ATTTATCAAAATAT-TACAACTTTTTTTTT
14482513 ATTTATCAAAATAT
1 ATTTATCAAAATAT
14482527 ATCAAAAAAA
Statistics
Matches: 63, Mismatches: 2, Indels: 10
0.84 0.03 0.13
Matches are distributed among these distances:
27 22 0.35
28 4 0.06
29 37 0.59
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.52
Consensus pattern (29 bp):
ATTTATCAAAATATTACAACTTTTTTTTT
Found at i:14483120 original size:19 final size:18
Alignment explanation
Indices: 14483096--14483156 Score: 59
Period size: 19 Copynumber: 3.3 Consensus size: 18
14483086 TCTAATTAAG
14483096 TAATAATTCTATTTTAATT
1 TAATAA-TCTATTTTAATT
* * *
14483115 TAATAAACTATTCTCATT
1 TAATAATCTATTTTAATT
* *
14483133 TAATAACTATATTTTAAAT
1 TAATAA-TCTATTTTAATT
14483152 TAATA
1 TAATA
14483157 GAAATATCAG
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
18 15 0.45
19 18 0.55
ACGTcount: A:0.43, C:0.08, G:0.00, T:0.49
Consensus pattern (18 bp):
TAATAATCTATTTTAATT
Found at i:14483125 original size:18 final size:18
Alignment explanation
Indices: 14483104--14483156 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
14483094 AGTAATAATT
14483104 CTATTTTAATTTAATAAA
1 CTATTTTAATTTAATAAA
* *
14483122 CTATTCTCATTTAAT-AA
1 CTATTTTAATTTAATAAA
*
14483139 CTATATTTTAAATTAATA
1 C--TATTTTAATTTAATA
14483157 GAAATATCAG
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
17 3 0.11
18 13 0.48
19 11 0.41
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.49
Consensus pattern (18 bp):
CTATTTTAATTTAATAAA
Found at i:14483683 original size:27 final size:27
Alignment explanation
Indices: 14483647--14483730 Score: 143
Period size: 27 Copynumber: 3.1 Consensus size: 27
14483637 TTTTAGTCCT
14483647 TTGGCA-CATTGGTGCCGCCAATGGCA
1 TTGGCACCATTGGTGCCGCCAATGGCA
*
14483673 TTGGCACCATTGGTGCTGCCAATGGCA
1 TTGGCACCATTGGTGCCGCCAATGGCA
*
14483700 TTGGCACCTTTGGTGCCGCCAATGGCA
1 TTGGCACCATTGGTGCCGCCAATGGCA
14483727 TTGG
1 TTGG
14483731 GGTGATCAGG
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
26 6 0.11
27 48 0.89
ACGTcount: A:0.17, C:0.26, G:0.31, T:0.26
Consensus pattern (27 bp):
TTGGCACCATTGGTGCCGCCAATGGCA
Found at i:14483804 original size:29 final size:29
Alignment explanation
Indices: 14483765--14483865 Score: 177
Period size: 29 Copynumber: 3.5 Consensus size: 29
14483755 TTTTTTTGAT
14483765 ATATTTTGGTAAATAAAAAAAAAGTT-TA
1 ATATTTTGGTAAATAAAAAAAAAGTTGTA
14483793 TATATTTTGGTAAATAAAAAAAAAGTTGTA
1 -ATATTTTGGTAAATAAAAAAAAAGTTGTA
14483823 ATATTTTGGTAAATAAAAAAAAAGTTGTA
1 ATATTTTGGTAAATAAAAAAAAAGTTGTA
*
14483852 ATGTTTTGGTAAAT
1 ATATTTTGGTAAAT
14483866 TTTTATTTTT
Statistics
Matches: 70, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
29 68 0.97
30 2 0.03
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.38
Consensus pattern (29 bp):
ATATTTTGGTAAATAAAAAAAAAGTTGTA
Found at i:14483883 original size:58 final size:58
Alignment explanation
Indices: 14483750--14483893 Score: 141
Period size: 58 Copynumber: 2.5 Consensus size: 58
14483740 GCTGTGTCAG
14483750 TTTTT-TTTTTTTGAT-ATATTTTGGTAAATAAAAAAAAAGTTTATATATTTTGGTAAA
1 TTTTTATTTTTTT-ATAATATTTTGGTAAATAAAAAAAAAGTTTATATATTTTGGTAAA
**** ***** * *
14483807 TAAAAAAAAAGTTGTAATATTTTGGTAAATAAAAAAAAAGTTGTA-ATGTTTTGGTAAA
1 TTTTTATTTTTTTATAATATTTTGGTAAATAAAAAAAAAGTT-TATATATTTTGGTAAA
*
14483865 TTTTTATTTTTTTATAATATTTTTGTAAA
1 TTTTTATTTTTTTATAATATTTTGGTAAA
14483894 AAACCCAGTT
Statistics
Matches: 62, Mismatches: 22, Indels: 5
0.70 0.25 0.06
Matches are distributed among these distances:
57 2 0.03
58 58 0.94
59 2 0.03
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (58 bp):
TTTTTATTTTTTTATAATATTTTGGTAAATAAAAAAAAAGTTTATATATTTTGGTAAA
Found at i:14486935 original size:28 final size:30
Alignment explanation
Indices: 14486883--14486939 Score: 82
Period size: 28 Copynumber: 1.9 Consensus size: 30
14486873 GGTTTTTTTA
*
14486883 TAAAATCAAAAACTATATTCTAATTAAAAAT
1 TAAAATCAAAAAC-ATATTATAATTAAAAAT
14486914 TAAAA-CAAAAA-ATATTATAATTAAAA
1 TAAAATCAAAAACATATTATAATTAAAA
14486940 GTTTTAGGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 14 0.56
30 6 0.24
31 5 0.20
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (30 bp):
TAAAATCAAAAACATATTATAATTAAAAAT
Found at i:14493774 original size:18 final size:20
Alignment explanation
Indices: 14493733--14493779 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
14493723 GTATGTGTAC
*
14493733 ATATATAAGGTATATAAATA
1 ATATATAAGGTATAAAAATA
14493753 ATATATAA-GTATAAAAATA
1 ATATATAAGGTATAAAAATA
14493772 TATATATA
1 -ATATATA
14493780 CAAATAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 10 0.40
20 15 0.60
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.36
Consensus pattern (20 bp):
ATATATAAGGTATAAAAATA
Found at i:14493779 original size:14 final size:14
Alignment explanation
Indices: 14493743--14493785 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
14493733 ATATATAAGG
14493743 TATATAAATAATATA
1 TATATAAA-AATATA
14493758 TAAGTATAAAAATATA
1 T-A-TATAAAAATATA
*
14493774 TATATACAAATA
1 TATATAAAAATA
14493786 AATTTAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 9 0.36
15 2 0.08
16 8 0.32
17 6 0.24
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (14 bp):
TATATAAAAATATA
Found at i:14493833 original size:24 final size:23
Alignment explanation
Indices: 14493800--14493845 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
14493790 TAAAAAAAAT
* *
14493800 ATGTACGTATGTATATATGACAAA
1 ATGTAAGTATGTACATAT-ACAAA
14493824 ATGTAAGTATGTACATATACAA
1 ATGTAAGTATGTACATATACAA
14493846 CAAAATTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.43, C:0.09, G:0.15, T:0.33
Consensus pattern (23 bp):
ATGTAAGTATGTACATATACAAA
Found at i:14495509 original size:44 final size:44
Alignment explanation
Indices: 14495455--14495637 Score: 155
Period size: 44 Copynumber: 4.3 Consensus size: 44
14495445 TCCACTACTG
* *
14495455 TTTAGGGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAAC
1 TTTAGGGAGATAAGATCTGTGGTTTTAATCCACTCCACTACAAC
* ** ** **
14495499 TTTAGGGAGATAAGAT-TG-GTTTCTTCTGTCTGCTCCACTACTGC
1 TTTAGGGAGATAAGATCTGTGGTT-TT-AATCCACTCCACTACAAC
* * * * **
14495543 -TTAGGGAGATAAGA-CT-T-GATGTGATCTACTCCACTATTAC
1 TTTAGGGAGATAAGATCTGTGGTTTTAATCCACTCCACTACAAC
*
14495583 -TTAGGGAGATAAGATCTGTGGTTTTAATCCACTCCACTGCAAC
1 TTTAGGGAGATAAGATCTGTGGTTTTAATCCACTCCACTACAAC
14495626 TTTAGGGAGATA
1 TTTAGGGAGATA
14495638 GGATTGGTTT
Statistics
Matches: 109, Mismatches: 22, Indels: 16
0.74 0.15 0.11
Matches are distributed among these distances:
40 27 0.25
41 3 0.03
42 5 0.05
43 35 0.32
44 39 0.36
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (44 bp):
TTTAGGGAGATAAGATCTGTGGTTTTAATCCACTCCACTACAAC
Found at i:14495517 original size:127 final size:127
Alignment explanation
Indices: 14495290--14495726 Score: 676
Period size: 127 Copynumber: 3.4 Consensus size: 127
14495280 CTGTAACTTC
* * * * * * * *
14495290 AGGGAGATAAGGCTGGATGCGATCTTCTCTACTACTACTTCAGAGAGATAAGATCTTTGTTTTTA
1 AGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTT-AGGGAGATAAGATCTGTGGTTTTA
** * *
14495355 ATCCGCTCCACTGTGACTTCAGAGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTACTGCTT
65 ATCCGCTCCACTGCAACTTTAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTACTGCTT
*
14495418 AGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTGTGGTTTTAA
1 AGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTTTAA
*
14495483 TCCGCTCCACTGCAACTTTAGGGAGATAAGATTGGTTTCTTCTGTCTGCTCCACTACTGCTT
66 TCCGCTCCACTGCAACTTTAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTACTGCTT
* * * *
14495545 AGGGAGATAAGACTTGATGTGATCTACTCCACTATTACTTAGGGAGATAAGATCTGTGGTTTTAA
1 AGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTTTAA
*
14495610 TCCACTCCACTGCAACTTTAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTACTGCTT
66 TCCGCTCCACTGCAACTTTAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTACTGCTT
* *
14495672 AGGGAGATAAGACTTGGTGCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCT
1 AGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
14495727 ACCATCTTTG
Statistics
Matches: 282, Mismatches: 27, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
127 248 0.88
128 34 0.12
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.33
Consensus pattern (127 bp):
AGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTTTAA
TCCGCTCCACTGCAACTTTAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTACTGCTT
Found at i:14495662 original size:44 final size:42
Alignment explanation
Indices: 14495378--14495689 Score: 167
Period size: 43 Copynumber: 7.3 Consensus size: 42
14495368 TGACTTCAGA
* **
14495378 GAGATAGGATTGGTTTCTTCTGTCTGCTCCACTACTGCTTAGG
1 GAGATAAGATTGGTTT-TTCTGTCTGCTCCACTACAACTTAGG
* * ***
14495421 GAGATAAGACTT-G--ATGC-GATCTGCTCCACTACTGTTTAGG
1 GAGATAAGA-TTGGTTTTTCTG-TCTGCTCCACTACAACTTAGG
* ** * *
14495461 GAGATAAGATCTGTGGTTTT-AATCCGCTCCACTGCAACTTTAGG
1 GAGATAAGAT-TG-GTTTTTCTGTCTGCTCCACTACAAC-TTAGG
**
14495505 GAGATAAGATTGGTTTCTTCTGTCTGCTCCACTACTGCTTAGG
1 GAGATAAGATTGGTTT-TTCTGTCTGCTCCACTACAACTTAGG
* * * **
14495548 GAGATAAGACTT-G---ATGTGATCTACTCCACTATTACTTAGG
1 GAGATAAGA-TTGGTTTTTCTG-TCTGCTCCACTACAACTTAGG
* ** ** *
14495588 GAGATAAGATCTGTGGTTTT-AATCCACTCCACTGCAACTTTAGG
1 GAGATAAGAT-TG-GTTTTTCTGTCTGCTCCACTACAAC-TTAGG
* **
14495632 GAGATAGGATTGGTTTCTTCTGTCTGCTCCACTACTGCTTAGG
1 GAGATAAGATTGGTTT-TTCTGTCTGCTCCACTACAACTTAGG
14495675 GAGATAAGACTTGGT
1 GAGATAAGA-TTGGT
14495690 GCGATCTGCT
Statistics
Matches: 205, Mismatches: 41, Indels: 45
0.70 0.14 0.15
Matches are distributed among these distances:
39 6 0.03
40 60 0.29
42 8 0.04
43 68 0.33
44 62 0.30
45 1 0.00
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.34
Consensus pattern (42 bp):
GAGATAAGATTGGTTTTTCTGTCTGCTCCACTACAACTTAGG
Found at i:14495853 original size:131 final size:129
Alignment explanation
Indices: 14495627--14496645 Score: 826
Period size: 131 Copynumber: 7.8 Consensus size: 129
14495617 CACTGCAACT
* ** * * * *
14495627 TTAGGGAGATAGGATTGGTTTCTTCTG-TCTGCTCCACTACTGCTTAGGGAGATA-A-GA-CTTG
1 TTAGGGAGATAGGACTGGTGGCTT-AGATCTGCTTCACTACTGCTTAGGGAGATAGATCACCAT-
* *
14495688 GTGCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTG
64 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTG
14495753 C
129 C
* * * * *
14495754 TTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTACTTAGGAAGATGAGATTCGCCGT
1 TTAGGGAGATAGGACTGGTGGCTTAGATCTGCTTCACTACTGCTTAGGGAGAT-AGA-TCACCAT
14495819 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTG
64 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTG
14495884 C
129 C
* * *
14495885 TTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATGAGATTCACCGT
1 TTAGGGAGATAGGACTGGTGGCTTAGATCTGCTTCACTACTGCTTAGGGAGAT-AGA-TCACCAT
*
14495950 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTACTCCACTACTG
64 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTG
14496015 C
129 C
* * ** * * * **
14496016 TTAGGGAGATATGA-T-TTACCATCTCCGACCTGCTCCACTACTGCTTAGGGAGATATGA-C-TG
1 TTAGGGAGATAGGACTGGTGGC-T-T-AGATCTGCTTCACTACTGCTTAGGGAGATA-GATCACC
* ** * * * * * *
14496077 GTGGCTTAAATCTGCTTCATTACTGCTTAGGAAGAT-GAGAT-TCACCGTCTTCGATCTGCTCCA
62 AT--CTTCGATCTGCTCCACTACTGCTTAGGGAGATAG-GATCT-ACCATCTTTGACCTGCTCCA
14496140 CTACTGC
123 CTACTGC
***** * *
14496147 TTAGGGAGATAGGATCTACCATCTTTGACCTGC-TCTACTACTGCTTAGGGAGATAAGATCTACC
1 TTAGGGAGATAGGA-CTGGTGGCTTAGATCTGCTTC-ACTACTGCTTAGGGAGAT-AGATC-ACC
* ***** ** * *
14496211 ATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTGGCTTAAATCTGCTTCACTAC
62 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTAC
14496275 TGC
127 TGC
* * * * * * *
14496278 TTAGGAAGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATATGATCTACCA
1 TTAGGGAGATAGGACTGGT-GGCTTAGATCTGCTTCACTACTGCTTAGGGAGATA-GATC-ACCA
* * * ***** ** * *
14496343 TCTTTGACCTGCTCCACTACTGCTTAAGGAGATAGGA-CTGGTGGCTTAAATCTGCTTCACTACT
63 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACT
*
14496407 AC
128 GC
* * * ** * * *
14496409 TTAAGAAGAT-GAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACC
1 TTAGGGAGATAG-GACT-GGTGGCTTAGATCTGCTTCACTACTGCTTAGGGAGATA-GATC-ACC
* * * * * *
14496473 ATCTTTGACCTCCTCCACTACTGATTAGGGAGATAGGATCTACCATCTTCGACCTGCTCTACTAC
62 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTAC
14496538 TGC
127 TGC
* * * * * **
14496541 TCAGGGAGATAGGACTGGTGGCTTAAATTTGCTTCACTACTACTTAGGAAGATAAGATTCGTCAT
1 TTAGGGAGATAGGACTGGTGGCTTAGATCTGCTTCACTACTGCTTAGGGAGAT-AGA-TCACCAT
*
14496606 CTTC-AGTCTGGTCCACTACTGCTTAGGGAGATAGGATCTA
64 CTTCGA-TCTGCTCCACTACTGCTTAGGGAGATAGGATCTA
14496646 ATATGATGAC
Statistics
Matches: 747, Mismatches: 111, Indels: 64
0.81 0.12 0.07
Matches are distributed among these distances:
127 44 0.06
128 1 0.00
129 5 0.01
130 9 0.01
131 589 0.79
132 92 0.12
133 4 0.01
134 3 0.00
ACGTcount: A:0.23, C:0.24, G:0.22, T:0.30
Consensus pattern (129 bp):
TTAGGGAGATAGGACTGGTGGCTTAGATCTGCTTCACTACTGCTTAGGGAGATAGATCACCATCT
TCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGC
Found at i:14495961 original size:175 final size:175
Alignment explanation
Indices: 14495826--14496554 Score: 1016
Period size: 175 Copynumber: 4.2 Consensus size: 175
14495816 CGTCTTCGAT
*
14495826 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGG
14495891 AGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATGAGATTCACCGTCTTCGA
66 AGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATGAGATTCACCGTCTTCGA
14495956 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGAC
131 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGAC
* * * *
14496001 CTACTCCACTACTGCTTAGGGAGATATGATTTACCATCTCCGACCTGCTCCACTACTGCTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGG
* *
14496066 AGATATGACTGGTGGCTTAAATCTGCTTCATTACTGCTTAGGAAGATGAGATTCACCGTCTTCGA
66 AGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATGAGATTCACCGTCTTCGA
14496131 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGAC
131 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGAC
* *
14496176 CTGCTCTACTACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGG
* **
14496241 AGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATTCGTCGTCTTCGA
66 AGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATGAGATTCACCGTCTTCGA
*
14496306 TCTGCTCCACTACTGCTTAGGGAGATATGATCTACCATCTTTGAC
131 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGAC
* ***** ** * * * * *
14496351 CTGCTCCACTACTGCTTAAGGAGATAGGA-CTGGTGGCTTAAATCTGCTTCACTACTACTTAAGA
1 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGG
* ** * ** * * *
14496415 AGAT-GAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAT-AGGA-TCTACCATCT
66 AGATAG-GACT-GGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATGA-GATTC-ACCGTCT
* * * * *
14496477 TTGACCTCCTCCACTACTGATTAGGGAGATAGGATCTACCATCTTCGAC
127 TCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGAC
* *
14496526 CTGCTCTACTACTGCTCAGGGAGATAGGA
1 CTGCTCCACTACTGCTTAGGGAGATAGGA
14496555 CTGGTGGCTT
Statistics
Matches: 497, Mismatches: 53, Indels: 8
0.89 0.09 0.01
Matches are distributed among these distances:
173 1 0.00
174 33 0.07
175 463 0.93
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (175 bp):
CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGG
AGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATGAGATTCACCGTCTTCGA
TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGAC
Found at i:14496057 original size:306 final size:305
Alignment explanation
Indices: 14495654--14496645 Score: 1325
Period size: 306 Copynumber: 3.3 Consensus size: 305
14495644 GTTTCTTCTG
* * * * *
14495654 TCTGCTCCACTACTGCTTAGGGAGATAAGACTT-G---GTGCGATCTGCTCCACTACTGCTTAGG
1 TCTGCTCCACTACTGCTTAGGAAGATAAGA-TTCGCATCTTCGACCTACTCCACTACTGCTTAGG
*
14495715 GAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAA
65 GAGATATGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAA
14495780 ATCTGCTTCACTACTACTTAGGAAGATGAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAG
130 ATCTGCTTCACTACTACTTAGGAAGATGAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAG
****
14495845 GGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTGGCTT
195 GGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAGCTT
* * * * **
14495909 AAATCTGCTTCACTACTGCTTAGGAAGAT-GAGATTCACCGTCTTCGA
260 AAACCTGCTCCACTACTGCTTAGGAAGATAG-GACT-ACCGGCTTAAA
* * *
14495956 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTAC-CATCTTTGACCTACTCCACTACTGCTTAG
1 TCTGCTCCACTACTGCTTAGGAAGATAAGAT-T-CGCATCTTCGACCTACTCCACTACTGCTTAG
* ** *
14496020 GGAGATATGATTTACCATCTCCGACCTGCTCCACTACTGCTTAGGGAGATATGACTGGTGGCTTA
64 GGAGATATGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTA
* * *
14496085 AATCTGCTTCATTACTGCTTAGGAAGATGAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTA
129 AATCTGCTTCACTACTACTTAGGAAGATGAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
* * *
14496150 GGGAGATAGGATCTACCATCTTTGACCTGCTCTACTACTGCTTAGGGAGATAAGATCTACCATCT
194 GGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAGCT
** * ***
14496215 TCGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAA
259 TAAACCTGCTCCACTACTGCTTAGGAAGATAGGACTACCGGCTTAAA
* * * *
14496262 TCTGCTTCACTACTGCTTAGGAAGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTGCTTAGG
1 TCTGCTCCACTACTGCTTAGGAAGATAAGATTCG-CATCTTCGACCTACTCCACTACTGCTTAGG
*
14496327 GAGATATGATCTACCATCTTTGACCTGCTCCACTACTGCTTAAGGAGATAGGACTGGTGGCTTAA
65 GAGATATGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAA
*
14496392 ATCTGCTTCACTACTACTTAAGAAGATGAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAG
130 ATCTGCTTCACTACTACTTAGGAAGATGAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAG
* * *
14496457 GGAGATAGGATCTACCATCTTTGACCTCCTCCACTACTGATTAGGGAGATAGGATCTACCATCTT
195 GGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAGCTT
** * * * ***
14496522 CGACCTGCTCTACTACTGCTCAGGGAGATAGGACTGGTGGCTTAAA
260 AAACCTGCTCCACTACTGCTTAGGAAGATAGGACTACCGGCTTAAA
* * * * **
14496568 TTTGCTTCACTACTACTTAGGAAGATAAGATTCGTCATCTTC-AGTCTGGTCCACTACTGCTTAG
1 TCTGCTCCACTACTGCTTAGGAAGATAAGATTCG-CATCTTCGA-CCTACTCCACTACTGCTTAG
*
14496632 GGAGATAGGATCTA
64 GGAGATATGATCTA
14496646 ATATGATGAC
Statistics
Matches: 619, Mismatches: 60, Indels: 18
0.89 0.09 0.03
Matches are distributed among these distances:
301 1 0.00
302 30 0.05
304 1 0.00
305 2 0.00
306 552 0.89
307 32 0.05
308 1 0.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (305 bp):
TCTGCTCCACTACTGCTTAGGAAGATAAGATTCGCATCTTCGACCTACTCCACTACTGCTTAGGG
AGATATGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAA
TCTGCTTCACTACTACTTAGGAAGATGAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGG
GAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCAGCTTA
AACCTGCTCCACTACTGCTTAGGAAGATAGGACTACCGGCTTAAA
Found at i:14496555 original size:175 final size:173
Alignment explanation
Indices: 14495655--14496594 Score: 869
Period size: 175 Copynumber: 5.4 Consensus size: 173
14495645 TTTCTTCTGT
* * * * *
14495655 CTGCTCCACTACTGCTTAGGGAGATAAGACTTGGT-GC---GATCTGCTCCACTACTGCTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGATAGGAC-TGGTAGCTTAAACCTGCTCCACTACTACTTAGGA
** ** ** * * * * *** * **
14495716 AGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAA
65 AGATAGGA-CTGGCGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAGGATTACCGTCTTCGA
* * * * * * *
14495781 TCTGCTTCACTACTACTTAGGAAGAT-GAGAT-TCGCCGTCTTCGAT
129 TCTGCTCCACTACTGCTTAGGGAGATAG-GATCT-ACCATCTTTGAC
*** * ** * *
14495826 CTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGACCTGCTCCACTACTGCTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTAGCTTAAACCTGCTCCACTACTACTTAGGA
*
14495891 AGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGAT-GAGATTCACCGTCTTCG
65 AGATAGGACTGGCGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAG-GATT-ACCGTCTTCG
14495955 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGAC
128 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGAC
* * * * ** *
14496001 CTACTCCACTACTGCTTAGGGAGATATGA-T-TTACCATCTCCGACCTGCTCCACTACTGCTTAG
1 CTGCTCCACTACTGCTTAGGGAGATAGGACTGGTAGC-T-T-AAACCTGCTCCACTACTACTTAG
* * * *
14496064 GGAGATATGACTGGTGGCTTAAATCTGCTTCATTACTGCTTAGGAAGAT-GAGATTCACCGTCTT
63 GAAGATAGGACTGGCGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAG-GATT-ACCGTCTT
14496128 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGAC
126 CGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGAC
* * *** * ** * *
14496176 CTGCTCTACTACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACTACTGCTTAGGG
1 CTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTAGCTTAAACCTGCTCCACTACTACTTAGGA
* *
14496241 AGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAAGATT-CGTCGTCTTCG
65 AGATAGGACTGGCGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAGGATTAC--CGTCTTCG
*
14496305 ATCTGCTCCACTACTGCTTAGGGAGATATGATCTACCATCTTTGAC
128 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGAC
* * * * *
14496351 CTGCTCCACTACTGCTTAAGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTACTTAAGAA
1 CTGCTCCACTACTGCTTAGGGAGATAGGACTGGTAGCTTAAACCTGCTCCACTACTACTTAGGAA
* * * ** * * * *
14496416 GAT-GAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTG
66 GATAG-GACT-GGCGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAGGAT-TACCGTCTTCG
* * * *
14496480 ACCTCCTCCACTACTGATTAGGGAGATAGGATCTACCATCTTCGAC
128 ATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGAC
* * * ** *
14496526 CTGCTCTACTACTGCTCAGGGAGATAGGACTGGTGGCTTAAATTTGCTTCACTACTACTTAGGAA
1 CTGCTCCACTACTGCTTAGGGAGATAGGACTGGTAGCTTAAACCTGCTCCACTACTACTTAGGAA
14496591 GATA
66 GATA
14496595 AGATTCGTCA
Statistics
Matches: 662, Mismatches: 84, Indels: 41
0.84 0.11 0.05
Matches are distributed among these distances:
171 29 0.04
172 4 0.01
173 5 0.01
174 63 0.10
175 552 0.83
176 4 0.01
177 3 0.00
178 2 0.00
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.30
Consensus pattern (173 bp):
CTGCTCCACTACTGCTTAGGGAGATAGGACTGGTAGCTTAAACCTGCTCCACTACTACTTAGGAA
GATAGGACTGGCGGCTTAAATCTGCTTCACTACTGCTTAGGAAGATAGGATTACCGTCTTCGATC
TGCTCCACTACTGCTTAGGGAGATAGGATCTACCATCTTTGAC
Found at i:14503164 original size:18 final size:20
Alignment explanation
Indices: 14503123--14503169 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
14503113 GTATGTGTAC
14503123 ATATATAAGGTATATAAATA
1 ATATATAAGGTATATAAATA
14503143 ATATATAA-GTATGA-AAATA
1 ATATATAAGGTAT-ATAAATA
14503162 TATATATA
1 -ATATATA
14503170 CAAATAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 9 0.36
20 16 0.64
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (20 bp):
ATATATAAGGTATATAAATA
Found at i:14503221 original size:24 final size:23
Alignment explanation
Indices: 14503188--14503233 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
14503178 TTAAAAAAAT
* *
14503188 ATGTACGTATGTATATATGACAAA
1 ATGTAAGTATGTACATAT-ACAAA
14503212 ATGTAAGTATGTACATATACAA
1 ATGTAAGTATGTACATATACAA
14503234 CAAAATTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.43, C:0.09, G:0.15, T:0.33
Consensus pattern (23 bp):
ATGTAAGTATGTACATATACAAA
Found at i:14519189 original size:5 final size:5
Alignment explanation
Indices: 14519169--14519203 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
14519159 ATCTCTCTCT
*
14519169 TTCCC -TCCC TTTCC TTCCC TTCCC TTCCC TTCCC T
1 TTCCC TTCCC TTCCC TTCCC TTCCC TTCCC TTCCC T
14519204 CGCTCGCTCC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.00, C:0.57, G:0.00, T:0.43
Consensus pattern (5 bp):
TTCCC
Found at i:14520834 original size:26 final size:26
Alignment explanation
Indices: 14520805--14520857 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
14520795 ATAATTTAAA
14520805 TTAAATGTATGTGTTT-CAA-ATTGTTT
1 TTAAATGTA-GT-TTTACAAGATTGTTT
*
14520831 TTAAATTTAGTTTTACAAGATTGTTT
1 TTAAATGTAGTTTTACAAGATTGTTT
14520857 T
1 T
14520858 AACATTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 3 0.12
25 5 0.21
26 16 0.67
ACGTcount: A:0.28, C:0.04, G:0.13, T:0.55
Consensus pattern (26 bp):
TTAAATGTAGTTTTACAAGATTGTTT
Found at i:14522431 original size:18 final size:19
Alignment explanation
Indices: 14522395--14522432 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
14522385 TTATATGTAA
* *
14522395 TATATATACATTTATATTT
1 TATATATACATATACATTT
14522414 TATA-ATACATATACATTT
1 TATATATACATATACATTT
14522432 T
1 T
14522433 CCTTATTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.39, C:0.08, G:0.00, T:0.53
Consensus pattern (19 bp):
TATATATACATATACATTT
Found at i:14522803 original size:5 final size:5
Alignment explanation
Indices: 14522793--14522817 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
14522783 TTTTTGTTTC
14522793 TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT
14522818 GGCTATAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:14523343 original size:10 final size:10
Alignment explanation
Indices: 14523330--14523356 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
14523320 TTTGAAGGTT
14523330 TTTTTTTTTG
1 TTTTTTTTTG
14523340 TTTTTTTTTG
1 TTTTTTTTTG
14523350 TTTTTTT
1 TTTTTTT
14523357 GAAGAAGGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:14527087 original size:21 final size:21
Alignment explanation
Indices: 14527063--14527108 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
14527053 TGTGGTGCAC
14527063 TTTTAAAAGGAATCTAGGAAT
1 TTTTAAAAGGAATCTAGGAAT
** * *
14527084 TTTTGGAAGGGATCTAGGCAT
1 TTTTAAAAGGAATCTAGGAAT
14527105 TTTT
1 TTTT
14527109 TGTAACACCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.07, G:0.24, T:0.39
Consensus pattern (21 bp):
TTTTAAAAGGAATCTAGGAAT
Found at i:14529396 original size:43 final size:43
Alignment explanation
Indices: 14529317--14529472 Score: 156
Period size: 43 Copynumber: 3.7 Consensus size: 43
14529307 AATTCCATAT
* * * * *
14529317 CCCAGATACGGTCTTACATGTAATCTCGTATTGATGCCAATAG
1 CCCAGACATGGTCTTACACGAAATCTCATATTGATGCCAATAG
* * *
14529360 CCCAGCCATGGTCTTACACGAAATCACATATCGATGCCAAT-G
1 CCCAGACATGGTCTTACACGAAATCTCATATTGATGCCAATAG
* * *
14529402 TCCCAAACATGGTCTTACAC-AAATTCTCATGTTGATGCC-ATAT
1 -CCCAGACATGGTCTTACACGAAA-TCTCATATTGATGCCAATAG
* *
14529445 CCCAGATATGGTCTTACACGTAATCTCA
1 CCCAGACATGGTCTTACACGAAATCTCA
14529473 GTAACCCGAA
Statistics
Matches: 92, Mismatches: 17, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
42 28 0.30
43 64 0.70
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.28
Consensus pattern (43 bp):
CCCAGACATGGTCTTACACGAAATCTCATATTGATGCCAATAG
Found at i:14531279 original size:47 final size:47
Alignment explanation
Indices: 14531228--14531319 Score: 184
Period size: 47 Copynumber: 2.0 Consensus size: 47
14531218 CTTTTTCTTA
14531228 CTAAGTTTTCTTTCTTTAAGGAAAAATTAGAGTCGTTCAAAGGGGTG
1 CTAAGTTTTCTTTCTTTAAGGAAAAATTAGAGTCGTTCAAAGGGGTG
14531275 CTAAGTTTTCTTTCTTTAAGGAAAAATTAGAGTCGTTCAAAGGGG
1 CTAAGTTTTCTTTCTTTAAGGAAAAATTAGAGTCGTTCAAAGGGG
14531320 GGTTGTGAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.30, C:0.11, G:0.23, T:0.36
Consensus pattern (47 bp):
CTAAGTTTTCTTTCTTTAAGGAAAAATTAGAGTCGTTCAAAGGGGTG
Found at i:14532310 original size:44 final size:44
Alignment explanation
Indices: 14532260--14532427 Score: 148
Period size: 44 Copynumber: 3.8 Consensus size: 44
14532250 AGACCAGTTG
14532260 CAAATACAATTTTATCATTAAGTTTGATATTCAAAACTTGAATT
1 CAAATACAATTTTATCATTAAGTTTGATATTCAAAACTTGAATT
* *
14532304 CAAATACAACTTTATCATTAAGTTTGATATTC--AA-TAGAATT
1 CAAATACAATTTTATCATTAAGTTTGATATTCAAAACTTGAATT
* * ** * *
14532345 CTAAT--ATTTATTAGGAGTAGAGTTTATATTATTTATTCAAAACTTGAATT
1 CAAATACAATT-TTATCATTA-AG--T-T-TGA--TATTCAAAACTTGAATT
*
14532395 CAAATACAATTTTATCATTAAGTTTAATATTCA
1 CAAATACAATTTTATCATTAAGTTTGATATTCA
14532428 TTAGAATTCT
Statistics
Matches: 95, Mismatches: 16, Indels: 26
0.69 0.12 0.19
Matches are distributed among these distances:
39 2 0.02
40 6 0.06
41 12 0.13
42 2 0.02
43 1 0.01
44 38 0.40
45 2 0.02
46 2 0.02
47 6 0.06
48 1 0.01
49 2 0.02
50 12 0.13
51 6 0.06
52 3 0.03
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42
Consensus pattern (44 bp):
CAAATACAATTTTATCATTAAGTTTGATATTCAAAACTTGAATT
Found at i:14532491 original size:91 final size:91
Alignment explanation
Indices: 14532287--14532471 Score: 334
Period size: 91 Copynumber: 2.0 Consensus size: 91
14532277 TTAAGTTTGA
*
14532287 TATTCAAAACTTGAATTCAAATACAACTTTATCATTAAGTTTGATATTCAATAGAATTCTAATAT
1 TATTCAAAACTTGAATTCAAATACAACTTTATCATTAAGTTTAATATTCAATAGAATTCTAATAT
14532352 TTATTAGGAGTAGAGTTTATATTATT
66 TTATTAGGAGTAGAGTTTATATTATT
* * *
14532378 TATTCAAAACTTGAATTCAAATACAATTTTATCATTAAGTTTAATATTCATTAGAATTCTAGTAT
1 TATTCAAAACTTGAATTCAAATACAACTTTATCATTAAGTTTAATATTCAATAGAATTCTAATAT
14532443 TTATTAGGAGTAGAGTTTATATTATT
66 TTATTAGGAGTAGAGTTTATATTATT
14532469 TAT
1 TAT
14532472 ATTCCTTATA
Statistics
Matches: 90, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
91 90 1.00
ACGTcount: A:0.38, C:0.08, G:0.10, T:0.44
Consensus pattern (91 bp):
TATTCAAAACTTGAATTCAAATACAACTTTATCATTAAGTTTAATATTCAATAGAATTCTAATAT
TTATTAGGAGTAGAGTTTATATTATT
Found at i:14533417 original size:21 final size:21
Alignment explanation
Indices: 14533393--14533438 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
14533383 TGTGGTGCAC
14533393 TTTTAAAAGGAATCTAGGAAT
1 TTTTAAAAGGAATCTAGGAAT
* *
14533414 TTTTCAAAGGGATCTAGGAAT
1 TTTTAAAAGGAATCTAGGAAT
14533435 TTTT
1 TTTT
14533439 GGGTCAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.35, C:0.07, G:0.20, T:0.39
Consensus pattern (21 bp):
TTTTAAAAGGAATCTAGGAAT
Found at i:14537658 original size:23 final size:22
Alignment explanation
Indices: 14537608--14537660 Score: 56
Period size: 21 Copynumber: 2.4 Consensus size: 22
14537598 ACAACTTTTG
14537608 ATTTTAAATATGATTATAGAAAA
1 ATTTTAAA-ATGATTATAGAAAA
* *
14537631 A--TTAAAATGGTTAATATAAAA
1 ATTTTAAAATGATT-ATAGAAAA
14537652 ATTTTAAAA
1 ATTTTAAAA
14537661 ATTGATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 5 0.20
21 13 0.52
23 7 0.28
ACGTcount: A:0.55, C:0.00, G:0.08, T:0.38
Consensus pattern (22 bp):
ATTTTAAAATGATTATAGAAAA
Found at i:14539713 original size:32 final size:32
Alignment explanation
Indices: 14539622--14539766 Score: 160
Period size: 32 Copynumber: 4.7 Consensus size: 32
14539612 ATAGGTTCCA
* * *
14539622 TTTT-AGTTTATTAGATTTTGAAATTATTATG
1 TTTTAAGTTTGTTAGATATTGAATTTATTATG
*
14539653 TCTTGAA-TTTGTTAGATATTG-----ATTATG
1 T-TTTAAGTTTGTTAGATATTGAATTTATTATG
14539680 TTTTAAGTTTGTTAGATATTGAATTTATTATG
1 TTTTAAGTTTGTTAGATATTGAATTTATTATG
* * *
14539712 TTTTAAGCTTGTTGGATATTGAATTTATTATA
1 TTTTAAGTTTGTTAGATATTGAATTTATTATG
*
14539744 TTTTAAGTTTGTTGGATATTGAA
1 TTTTAAGTTTGTTAGATATTGAA
14539767 ATGATTGACA
Statistics
Matches: 98, Mismatches: 8, Indels: 15
0.81 0.07 0.12
Matches are distributed among these distances:
26 4 0.04
27 21 0.21
31 1 0.01
32 71 0.72
33 1 0.01
ACGTcount: A:0.28, C:0.01, G:0.17, T:0.54
Consensus pattern (32 bp):
TTTTAAGTTTGTTAGATATTGAATTTATTATG
Found at i:14539724 original size:59 final size:60
Alignment explanation
Indices: 14539621--14539768 Score: 158
Period size: 59 Copynumber: 2.4 Consensus size: 60
14539611 GATAGGTTCC
* * *
14539621 ATTTT-AGTTTATTAGATTTTGAAATTATTATGTCTTGAATTTGTTAGATATTG-ATTAT
1 ATTTTAAGTTTGTTAGATATTGAAATTATTATGTCTTGAACTTGTTAGATATTGTATTAT
* * * *
14539679 GTTTTAAGTTTGTTAGATATTGAATTTATTATGT-TTTAAGCTTGTTGGATATTGAATTTATTAT
1 ATTTTAAGTTTGTTAGATATTGAAATTATTATGTCTTGAA-CTTGTTAGATATTG----TATTAT
*
14539743 ATTTTAAGTTTGTTGGATATTGAAAT
1 ATTTTAAGTTTGTTAGATATTGAAAT
14539769 GATTGACAAT
Statistics
Matches: 73, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
58 8 0.11
59 37 0.51
64 28 0.38
ACGTcount: A:0.28, C:0.01, G:0.16, T:0.54
Consensus pattern (60 bp):
ATTTTAAGTTTGTTAGATATTGAAATTATTATGTCTTGAACTTGTTAGATATTGTATTAT
Found at i:14541045 original size:20 final size:20
Alignment explanation
Indices: 14541020--14541057 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
14541010 ACAATTTAAA
14541020 ATATAAATTTATTAATATGT
1 ATATAAATTTATTAATATGT
14541040 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
14541058 ATGTAAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (20 bp):
ATATAAATTTATTAATATGT
Found at i:14541169 original size:20 final size:19
Alignment explanation
Indices: 14541143--14541186 Score: 70
Period size: 20 Copynumber: 2.3 Consensus size: 19
14541133 CCAAACACCA
*
14541143 AAAAAGTAAATTATTTTCC
1 AAAAAGTAAATCATTTTCC
14541162 AGAAAAGTAAATCATTTTCC
1 A-AAAAGTAAATCATTTTCC
14541182 AAAAA
1 AAAAA
14541187 TTATTTTCCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.52, C:0.11, G:0.07, T:0.30
Consensus pattern (19 bp):
AAAAAGTAAATCATTTTCC
Found at i:14541365 original size:24 final size:24
Alignment explanation
Indices: 14541310--14541357 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
14541300 TCCTAAGGTT
*
14541310 AAGTTTTTAATATTTTTAGGTTTA
1 AAGTTTTTAATATATTTAGGTTTA
14541334 AAGTTTTTAATATATTTAGGTTTA
1 AAGTTTTTAATATATTTAGGTTTA
14541358 GGGTTTTTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (24 bp):
AAGTTTTTAATATATTTAGGTTTA
Found at i:14541370 original size:15 final size:15
Alignment explanation
Indices: 14541352--14541381 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14541342 AATATATTTA
*
14541352 GGTTTAGGGTTTTTG
1 GGTTTAGGATTTTTG
14541367 GGTTTAGGATTTTTG
1 GGTTTAGGATTTTTG
14541382 ACAAAAACTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.00, G:0.37, T:0.53
Consensus pattern (15 bp):
GGTTTAGGATTTTTG
Found at i:14543086 original size:19 final size:19
Alignment explanation
Indices: 14543064--14543104 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
14543054 ATTGCATTTC
14543064 ATTCA-TTGCATTTAGGTTA
1 ATTCATTTGCATTTA-GTTA
14543083 ATTCATTTGCATTTAGTTA
1 ATTCATTTGCATTTAGTTA
14543102 ATT
1 ATT
14543105 AAATTAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.27, C:0.10, G:0.12, T:0.51
Consensus pattern (19 bp):
ATTCATTTGCATTTAGTTA
Found at i:14545923 original size:23 final size:23
Alignment explanation
Indices: 14545889--14545940 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
14545879 AACTAATATT
*
14545889 TTTA-AACGAGAATATTGA-AAAA
1 TTTAGAACAAGAA-ATTGAGAAAA
*
14545911 TTTAGAACAAGAACTTGAGAAAA
1 TTTAGAACAAGAAATTGAGAAAA
*
14545934 TTGAGAA
1 TTTAGAA
14545941 AGTTGAGAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
22 8 0.32
23 17 0.68
ACGTcount: A:0.52, C:0.06, G:0.17, T:0.25
Consensus pattern (23 bp):
TTTAGAACAAGAAATTGAGAAAA
Found at i:14546009 original size:37 final size:37
Alignment explanation
Indices: 14545965--14546040 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
14545955 GGAAATTAGA
14545965 AAGAATTGAGAGAATAGAATATGAGTGAAAAATAAAT
1 AAGAATTGAGAGAATAGAATATGAGTGAAAAATAAAT
14546002 AAGAATTGAGAGAATAGAATATGAGTGAAAAATAAAT
1 AAGAATTGAGAGAATAGAATATGAGTGAAAAATAAAT
14546039 AA
1 AA
14546041 ATTTGAGGCG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.58, C:0.00, G:0.21, T:0.21
Consensus pattern (37 bp):
AAGAATTGAGAGAATAGAATATGAGTGAAAAATAAAT
Found at i:14550823 original size:12 final size:12
Alignment explanation
Indices: 14550806--14550846 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
14550796 ACTTAATCAC
14550806 TTTAATATTAAA
1 TTTAATATTAAA
14550818 TTTAATATTAAA
1 TTTAATATTAAA
*
14550830 TCT--TATTAAA
1 TTTAATATTAAA
14550840 -TTAATAT
1 TTTAATAT
14550847 AATATTTATC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
9 1 0.04
10 7 0.28
11 3 0.12
12 14 0.56
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:14550975 original size:62 final size:61
Alignment explanation
Indices: 14550814--14550975 Score: 155
Period size: 68 Copynumber: 2.5 Consensus size: 61
14550804 ACTTTAATAT
* ** * *
14550814 TAAATTTAATATTAAATCTTATTAAATTAATATAATATTTATCTACAAGATAAACATTAAAT
1 TAAATTTAATATTAAATC-TATTAAATTAATTTAATAAATATCTAAAAGATAAACATTAAAA
* **
14550876 TAAATTTAATATTAAGATAATCACTTTAATATTAATTTAATAAAATAT-TATAAAGATAAGTATT
1 TAAATTTAATATTAA-AT-CT-A--TTAA-ATTAATTTAAT-AAATATCTA-AAAGATAAACATT
14550940 AAAA
58 AAAA
*
14550944 TAAATTTAATATTAAATCTATTAAAATAATTT
1 TAAATTTAATATTAAATCTATTAAATTAATTT
14550976 TATTTTTGAA
Statistics
Matches: 82, Mismatches: 10, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
62 22 0.27
63 7 0.09
64 1 0.01
65 1 0.01
66 5 0.06
67 14 0.17
68 32 0.39
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.42
Consensus pattern (61 bp):
TAAATTTAATATTAAATCTATTAAATTAATTTAATAAATATCTAAAAGATAAACATTAAAA
Found at i:14551356 original size:9 final size:9
Alignment explanation
Indices: 14551342--14551371 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
14551332 AAAGTATCAT
14551342 ATTAATTTA
1 ATTAATTTA
*
14551351 ATTAATTTG
1 ATTAATTTA
14551360 ATTAATTTA
1 ATTAATTTA
14551369 ATT
1 ATT
14551372 TTATTTGATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (9 bp):
ATTAATTTA
Found at i:14554984 original size:19 final size:19
Alignment explanation
Indices: 14554962--14555025 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 19
14554952 GCACAAAGCA
14554962 CATCCTAGCACACAAAGTG
1 CATCCTAGCACACAAAGTG
* * *
14554981 CATCTTAGCGCACCAAGTG
1 CATCCTAGCACACAAAGTG
* **
14555000 CATACCTGGCACATGAAGTG
1 CAT-CCTAGCACACAAAGTG
14555020 CATCCT
1 CATCCT
14555026 GGTGCAAGAG
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
19 22 0.61
20 14 0.39
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.20
Consensus pattern (19 bp):
CATCCTAGCACACAAAGTG
Found at i:14559607 original size:41 final size:41
Alignment explanation
Indices: 14559550--14559740 Score: 328
Period size: 41 Copynumber: 4.6 Consensus size: 41
14559540 GACTATACGT
14559550 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
*
14559591 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAAGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
*
14559632 CTAGCAGGTTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
* * *
14559673 CTAGCAGGCTAAGTGTCGGTGATCTGAATCAGGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
14559714 CTAGCAGGCTAAGTGCCGGTGAATCTG
1 CTAGCAGGCTAAGTGCCGGTG-ATCTG
14559741 TTAAATTAAG
Statistics
Matches: 141, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
41 136 0.96
42 5 0.04
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
Found at i:14561022 original size:23 final size:23
Alignment explanation
Indices: 14560996--14561069 Score: 80
Period size: 23 Copynumber: 3.2 Consensus size: 23
14560986 AAAATGGTAT
14560996 CAAAATAGCACAAAAAACAACAC
1 CAAAATAGCACAAAAAACAACAC
* *
14561019 CAAAACAACACAAAAAACAACAC
1 CAAAATAGCACAAAAAACAACAC
* *
14561042 C--ACTAGCAACACCAAAACAACAC
1 CAAAATAGC-ACA-AAAAACAACAC
14561065 CAAAA
1 CAAAA
14561070 ACCTGCAAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
21 3 0.08
22 3 0.08
23 33 0.82
25 1 0.03
ACGTcount: A:0.64, C:0.31, G:0.03, T:0.03
Consensus pattern (23 bp):
CAAAATAGCACAAAAAACAACAC
Found at i:14561023 original size:11 final size:11
Alignment explanation
Indices: 14561009--14561069 Score: 77
Period size: 11 Copynumber: 5.4 Consensus size: 11
14560999 AATAGCACAA
14561009 AAAACAACACC
1 AAAACAACACC
*
14561020 AAAACAACACAA
1 AAAACAACAC-C
14561032 AAAACAACACC
1 AAAACAACACC
* *
14561043 ACTAGCAACACC
1 A-AAACAACACC
14561055 AAAACAACACC
1 AAAACAACACC
14561066 AAAA
1 AAAA
14561070 ACCTGCAAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
11 23 0.55
12 19 0.45
ACGTcount: A:0.64, C:0.33, G:0.02, T:0.02
Consensus pattern (11 bp):
AAAACAACACC
Found at i:14561023 original size:12 final size:12
Alignment explanation
Indices: 14561008--14561071 Score: 78
Period size: 12 Copynumber: 5.5 Consensus size: 12
14560998 AAATAGCACA
14561008 AAAAACAACACC
1 AAAAACAACACC
*
14561020 -AAAACAACACA
1 AAAAACAACACC
14561031 AAAAACAACACC
1 AAAAACAACACC
** *
14561043 ACTAGCAACACC
1 AAAAACAACACC
14561055 -AAAACAACACC
1 AAAAACAACACC
14561066 AAAAAC
1 AAAAAC
14561072 CTGCAAAATA
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
11 18 0.43
12 24 0.57
ACGTcount: A:0.64, C:0.33, G:0.02, T:0.02
Consensus pattern (12 bp):
AAAAACAACACC
Found at i:14561710 original size:70 final size:70
Alignment explanation
Indices: 14561597--14561736 Score: 244
Period size: 70 Copynumber: 2.0 Consensus size: 70
14561587 AAATAAATGT
* * * *
14561597 CCAACTGTGAATTTTTACTCTTAGTGCTAGATTCATTTAAATACCATTTATAATCATCACTCTCA
1 CCAACTGCGAATTTTCAATCTTAGTGCTAGATTCATTTAAATACCATTTATAATCACCACTCTCA
14561662 TCAAA
66 TCAAA
14561667 CCAACTGCGAATTTTCAATCTTAGTGCTAGATTCATTTAAATACCATTTATAATCACCACTCTCA
1 CCAACTGCGAATTTTCAATCTTAGTGCTAGATTCATTTAAATACCATTTATAATCACCACTCTCA
14561732 TCAAA
66 TCAAA
14561737 ATCTCCCCCA
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 66 1.00
ACGTcount: A:0.34, C:0.23, G:0.07, T:0.36
Consensus pattern (70 bp):
CCAACTGCGAATTTTCAATCTTAGTGCTAGATTCATTTAAATACCATTTATAATCACCACTCTCA
TCAAA
Found at i:14562305 original size:20 final size:19
Alignment explanation
Indices: 14562260--14562307 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 19
14562250 ATATTTGGAA
* *
14562260 AATTAATTTTAAAGTAATT
1 AATTAATTTTAAAGAAAAT
* *
14562279 AAATAATTATTAATGAAAAT
1 AATTAATT-TTAAAGAAAAT
14562299 AATTAATTT
1 AATTAATTT
14562308 GAGTCAAAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (19 bp):
AATTAATTTTAAAGAAAAT
Found at i:14565753 original size:10 final size:10
Alignment explanation
Indices: 14565738--14565779 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
14565728 ATTTTTTCTT
14565738 TTTCTTTTTA
1 TTTCTTTTTA
14565748 TTTCTTTTTA
1 TTTCTTTTTA
*
14565758 TTTATTATTTA
1 TTTCTT-TTTA
14565769 TATT-TTTTTA
1 T-TTCTTTTTA
14565779 T
1 T
14565780 GCTTTAGAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
10 20 0.69
11 7 0.24
12 2 0.07
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.79
Consensus pattern (10 bp):
TTTCTTTTTA
Found at i:14565753 original size:16 final size:17
Alignment explanation
Indices: 14565727--14565767 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
14565717 CTCCAAATTA
* *
14565727 TATTTTTTCTTTTTCTT
1 TATTATTTCTTTTTATT
14565744 T-TTATTTCTTTTTATT
1 TATTATTTCTTTTTATT
14565760 TATTATTT
1 TATTATTT
14565768 ATATTTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 14 0.67
17 7 0.33
ACGTcount: A:0.12, C:0.07, G:0.00, T:0.80
Consensus pattern (17 bp):
TATTATTTCTTTTTATT
Found at i:14566486 original size:16 final size:16
Alignment explanation
Indices: 14566465--14566516 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
14566455 TTTGGTTCAC
14566465 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
14566481 TGTATTGAATTAGAGG
1 TGTATTGGATTAGAGG
* *
14566497 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
14566513 TGTA
1 TGTA
14566517 ATAGCAAATC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.35, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:14566603 original size:39 final size:43
Alignment explanation
Indices: 14566497--14566606 Score: 120
Period size: 45 Copynumber: 2.6 Consensus size: 43
14566487 GAATTAGAGG
14566497 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT--A
** * ***
14566542 TGTAATGGAATAGAGGCATAATAG-TAATCTTGTGTTTGG-T-
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
14566582 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
14566607 TAATGGAAAA
Statistics
Matches: 55, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
39 19 0.35
40 2 0.04
43 1 0.02
44 11 0.20
45 22 0.40
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.32
Consensus pattern (43 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
Found at i:14566770 original size:16 final size:16
Alignment explanation
Indices: 14566733--14566774 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
14566723 TTAATCATAT
*
14566733 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
14566749 TT-AAATATATTATAA
1 TTAAAATATATTATAA
14566764 TTAAAATATAT
1 TTAAAATATAT
14566775 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:14566781 original size:14 final size:15
Alignment explanation
Indices: 14566742--14566783 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
14566732 TTTAAACATA
*
14566742 ATTATTATTAAATAT
1 ATTATAATTAAATAT
14566757 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
14566771 A-TATAATTTAATA
1 ATTATAATTAAATA
14566784 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:14567007 original size:88 final size:89
Alignment explanation
Indices: 14566915--14567125 Score: 277
Period size: 88 Copynumber: 2.4 Consensus size: 89
14566905 AATTTAAAAT
* * * *
14566915 AATTATAACTAATAAATTATCTTATATGAATTTGTATAATTTAAAATAATTATTATTACATATAA
1 AATTATAA-TAATAAATTATCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA
14566980 TTTAAT-A-ATATATAATTTCATAA
65 TTTAATAAGATATATAATTTCATAA
* * *
14567003 AATTATTGATAATAATTTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA
1 AATTA-TAATAATAAATTATCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA
14567068 TTTAATAATGATATATAATTTCATAA
65 TTTAATAA-GATATATAATTTCATAA
* *
14567094 AATTCTTAATAATAAA--ATGTTATATGAATTTA
1 AATT-ATAATAATAAATTATCTTATATGAATTTA
14567126 CTAAAATCAA
Statistics
Matches: 106, Mismatches: 12, Indels: 9
0.83 0.09 0.07
Matches are distributed among these distances:
88 61 0.58
89 17 0.16
91 28 0.26
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.45
Consensus pattern (89 bp):
AATTATAATAATAAATTATCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAAT
TTAATAAGATATATAATTTCATAA
Done.