Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 53 of 196
Found at i:14856343 original size:14 final size:14
Alignment explanation
Indices: 14856310--14856360 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
14856300 AGAAATAATG
* *
14856310 AATTTCTAAATCATA
1 AATTTCAAAATTA-A
14856325 AATTTCAAAATTAA
1 AATTTCAAAATTAA
* *
14856339 AATTTTAAAATTCA
1 AATTTCAAAATTAA
14856353 AATTTCAA
1 AATTTCAA
14856361 TTCCCAAATA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
14 20 0.65
15 11 0.35
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.39
Consensus pattern (14 bp):
AATTTCAAAATTAA
Found at i:14868892 original size:16 final size:16
Alignment explanation
Indices: 14868864--14868896 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14868854 ACTATAGTAG
14868864 AATGATTTCATAACTA
1 AATGATTTCATAACTA
14868880 AATGAGTTT-ATAACTA
1 AATGA-TTTCATAACTA
14868896 A
1 A
14868897 TAGGCGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.81
17 3 0.19
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.36
Consensus pattern (16 bp):
AATGATTTCATAACTA
Found at i:14873682 original size:18 final size:19
Alignment explanation
Indices: 14873659--14873701 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
14873649 TTAAATTTAG
*
14873659 AAATACGTGCCT-AACAAA
1 AAATACGTGCCTGAAAAAA
*
14873677 AAATACGTGCTTGAAAAAA
1 AAATACGTGCCTGAAAAAA
14873696 AAATAC
1 AAATAC
14873702 TCTTAATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.53, C:0.16, G:0.12, T:0.19
Consensus pattern (19 bp):
AAATACGTGCCTGAAAAAA
Found at i:14874054 original size:29 final size:29
Alignment explanation
Indices: 14873997--14874054 Score: 66
Period size: 29 Copynumber: 2.0 Consensus size: 29
14873987 TCAATCTAGG
* *
14873997 TTATGTTAGGTTCGAATTATGGTTGAATT
1 TTATGTTAGGCTCGAATTATGGTAGAATT
14874026 TTATGTTTAGGCTCG-ATTA-GGTAGCAATT
1 TTATG-TTAGGCTCGAATTATGGTAG-AATT
14874055 GGACAAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
28 4 0.16
29 13 0.52
30 8 0.32
ACGTcount: A:0.24, C:0.07, G:0.24, T:0.45
Consensus pattern (29 bp):
TTATGTTAGGCTCGAATTATGGTAGAATT
Found at i:14874983 original size:11 final size:11
Alignment explanation
Indices: 14874967--14875023 Score: 57
Period size: 11 Copynumber: 5.3 Consensus size: 11
14874957 TGTAAAATCC
14874967 AAAATTATTAA
1 AAAATTATTAA
14874978 AAAATTA-TAA
1 AAAATTATTAA
*
14874988 ATAAAGTA-TAA
1 A-AAATTATTAA
*
14874999 AAAATTATTTTA
1 AAAATTA-TTAA
14875011 AAAATT-TTAA
1 AAAATTATTAA
14875021 AAA
1 AAA
14875024 TTAATTCATG
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
10 15 0.38
11 16 0.41
12 8 0.21
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (11 bp):
AAAATTATTAA
Found at i:14876180 original size:18 final size:16
Alignment explanation
Indices: 14876156--14876235 Score: 58
Period size: 16 Copynumber: 5.1 Consensus size: 16
14876146 ATTATTGTTA
14876156 AATTTTATTATTAAAAT
1 AATTTTATTATT-AAAT
*
14876173 ACATTTTAATATTAAAT
1 A-ATTTTATTATTAAAT
14876190 AA-TTTATTA-T-AAT
1 AATTTTATTATTAAAT
* * *
14876203 AATATTATTAATAATT
1 AATTTTATTATTAAAT
* * *
14876219 TATTATATTATCAAAT
1 AATTTTATTATTAAAT
14876235 A
1 A
14876236 TAAATAAGTT
Statistics
Matches: 48, Mismatches: 11, Indels: 9
0.71 0.16 0.13
Matches are distributed among these distances:
13 5 0.10
14 7 0.15
15 7 0.15
16 13 0.27
17 6 0.12
18 10 0.21
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (16 bp):
AATTTTATTATTAAAT
Found at i:14876212 original size:14 final size:13
Alignment explanation
Indices: 14876182--14876225 Score: 58
Period size: 12 Copynumber: 3.5 Consensus size: 13
14876172 TACATTTTAA
14876182 TATTA-AATAATT
1 TATTATAATAATT
14876194 TATTATAATAA--
1 TATTATAATAATT
14876205 TATTATTAATAATT
1 TATTA-TAATAATT
14876219 TATTATA
1 TATTATA
14876226 TTATCAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
11 5 0.18
12 11 0.39
13 7 0.25
14 5 0.18
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TATTATAATAATT
Found at i:14876219 original size:25 final size:23
Alignment explanation
Indices: 14876179--14876225 Score: 76
Period size: 25 Copynumber: 2.0 Consensus size: 23
14876169 AAATACATTT
14876179 TAATATTAAATAATTTATTATAA
1 TAATATTAAATAATTTATTATAA
14876202 TAATATTATTAATAATTTATTATA
1 TAATATTA--AATAATTTATTATA
14876226 TTATCAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 8 0.36
25 14 0.64
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
TAATATTAAATAATTTATTATAA
Found at i:14877238 original size:5 final size:5
Alignment explanation
Indices: 14877228--14877252 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
14877218 TAAGTGATTC
14877228 TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT
14877253 ATTTCAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:14878657 original size:18 final size:19
Alignment explanation
Indices: 14878634--14878669 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
14878624 TCTTTTTCAC
14878634 GTTTTTCTTTTC-TCTTTA
1 GTTTTTCTTTTCTTCTTTA
14878652 GTTTTTCTTTTCTTCTTT
1 GTTTTTCTTTTCTTCTTT
14878670 CTTTGTTCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.03, C:0.17, G:0.06, T:0.75
Consensus pattern (19 bp):
GTTTTTCTTTTCTTCTTTA
Found at i:14878897 original size:34 final size:34
Alignment explanation
Indices: 14878859--14878929 Score: 99
Period size: 34 Copynumber: 2.1 Consensus size: 34
14878849 TCGTTCAAGT
* *
14878859 TGAGATCATGTATTA-TTTGTTTTGTTTGAATTTG
1 TGAGATCATGTA-GAGTTTGTTTTGTTCGAATTTG
*
14878893 TGAGATCGTGTAGAGTTTGTTTTGTTCGAATTTG
1 TGAGATCATGTAGAGTTTGTTTTGTTCGAATTTG
14878927 TGA
1 TGA
14878930 CTATTGTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
33 1 0.03
34 32 0.97
ACGTcount: A:0.20, C:0.04, G:0.25, T:0.51
Consensus pattern (34 bp):
TGAGATCATGTAGAGTTTGTTTTGTTCGAATTTG
Found at i:14880008 original size:15 final size:15
Alignment explanation
Indices: 14879988--14880017 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14879978 ACGATCCAAC
*
14879988 ATGATATGTTATGAT
1 ATGATAAGTTATGAT
14880003 ATGATAAGTTATGAT
1 ATGATAAGTTATGAT
14880018 CCATATGAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.43
Consensus pattern (15 bp):
ATGATAAGTTATGAT
Found at i:14888125 original size:40 final size:40
Alignment explanation
Indices: 14888057--14888325 Score: 299
Period size: 40 Copynumber: 6.7 Consensus size: 40
14888047 AAGAAAATAT
* * *
14888057 CCCCTGAATGCACATACGTACGCTTGTTTGTACTTCGGTA
1 CCCCTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTA
** * *
14888097 CCCCCAAATGCACATACGTGCCCCTGTTTCTACTTTGGTA
1 CCCCTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTA
14888137 CCCCTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTA
1 CCCCTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTA
* * *
14888177 -CCCTCGAATGCACATATGTGCCCCTATTTTTACTTCGGTA
1 CCCCT-GAATGCACATACGTGCCCCTGTTTGTACTTCGGTA
* * * * * **
14888217 CCCCTGAATACACATACATTCCCTTGTTTATACTTCAATA
1 CCCCTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTA
* * *
14888257 CTCCTGAATGCACATACGTGCCCCTGTATGTACTTCAGTA
1 CCCCTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTA
* * *
14888297 CTCCT-ACTTGCACATACGTGCCCTTGTTT
1 CCCCTGA-ATGCACATACGTGCCCCTGTTT
14888326 ATATTTTGGT
Statistics
Matches: 192, Mismatches: 34, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
39 5 0.03
40 183 0.95
41 4 0.02
ACGTcount: A:0.21, C:0.31, G:0.15, T:0.33
Consensus pattern (40 bp):
CCCCTGAATGCACATACGTGCCCCTGTTTGTACTTCGGTA
Found at i:14890015 original size:9 final size:9
Alignment explanation
Indices: 14890003--14890041 Score: 69
Period size: 9 Copynumber: 4.3 Consensus size: 9
14889993 ATATTTATAG
14890003 AGTCATTAT
1 AGTCATTAT
14890012 AGTCATTAT
1 AGTCATTAT
14890021 AGTCATTAT
1 AGTCATTAT
*
14890030 AGACATTAT
1 AGTCATTAT
14890039 AGT
1 AGT
14890042 TAATTAAGGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.36, C:0.10, G:0.13, T:0.41
Consensus pattern (9 bp):
AGTCATTAT
Found at i:14898380 original size:20 final size:20
Alignment explanation
Indices: 14898353--14898398 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
14898343 AGTGGATGGG
* *
14898353 GATATGATTTGATTTGTTAT
1 GATATGATTCGATTTGATAT
*
14898373 GCTATGATTCGATTTGATAT
1 GATATGATTCGATTTGATAT
14898393 GATATG
1 GATATG
14898399 TTATGATACG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.26, C:0.04, G:0.22, T:0.48
Consensus pattern (20 bp):
GATATGATTCGATTTGATAT
Found at i:14898398 original size:25 final size:25
Alignment explanation
Indices: 14898353--14898431 Score: 79
Period size: 25 Copynumber: 3.2 Consensus size: 25
14898343 AGTGGATGGG
* * *
14898353 GATATGATTTGATTTGTTATGCTAT
1 GATACGATTTGATATGATATGCTAT
* *
14898378 GATTCGATTTGATATGATATGTTAT
1 GATACGATTTGATATGATATGCTAT
* *
14898403 GATACGATCT-AGCATGATATGCTAT
1 GATACGATTTGA-TATGATATGCTAT
14898428 GATA
1 GATA
14898432 TGATAAGTTA
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
24 1 0.02
25 43 0.98
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.43
Consensus pattern (25 bp):
GATACGATTTGATATGATATGCTAT
Found at i:14898444 original size:25 final size:25
Alignment explanation
Indices: 14898390--14898444 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
14898380 TTCGATTTGA
* *
14898390 TATGATATGTTATGATACGATCTAG
1 TATGATATGCTATGATACGATCAAG
* *
14898415 CATGATATGCTATGATATGAT-AAG
1 TATGATATGCTATGATACGATCAAG
14898439 TTATGA
1 -TATGA
14898445 CTCATATGAA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
24 2 0.08
25 22 0.92
ACGTcount: A:0.35, C:0.07, G:0.20, T:0.38
Consensus pattern (25 bp):
TATGATATGCTATGATACGATCAAG
Found at i:14907041 original size:12 final size:12
Alignment explanation
Indices: 14907024--14907048 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14907014 CATCATCATT
14907024 TCCTTCTTCCTC
1 TCCTTCTTCCTC
14907036 TCCTTCTTCCTC
1 TCCTTCTTCCTC
14907048 T
1 T
14907049 TCCCCATGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (12 bp):
TCCTTCTTCCTC
Found at i:14907689 original size:266 final size:265
Alignment explanation
Indices: 14907226--14907761 Score: 905
Period size: 266 Copynumber: 2.0 Consensus size: 265
14907216 TTAGATTTCC
* * * *
14907226 TCTTTGGAAGGGAAGGTGGTACTTCTATCTTTTGCTTTTGGTGTTGATTCAACTTTTGAATTTGC
1 TCTTTGGAAGGGAAAGTGGAACTTCCATCTTTTGCTTTCGGTGTTGATTCAACTTTTGAATTTGC
14907291 TTCATTTGCAATTATCAATATTGTCCAAGAATGCTATCACCAATAATGCTTTTCATGGGTTTATG
66 TTCATTTGCAATTATCAATATTGTCCAAGAATGCTATCACCAATAATGCTTTTCATGGGTTTATG
14907356 GAACTATTCAGTTGGCTCTATTTTCACCTTAGCTTTACGACATAAATCTGTGACCTAGTGTGGAA
131 GAACTATTCAGTTGGCTCTATTTTCACCTTAGCTTTACGACATAAATCTGTGACCTAGTGTGGAA
* * *
14907421 AATATATACAAACTTTACCTCTAGAAACACATTTACACATATATTTGTGAACCCATTTCCCTAAA
196 AATATATACAAACTTTACCTCCAGAAACACAGTTACACATATATTTGTGAACCCATTTCCCCAAA
14907486 AAAAT
261 AAAAT
* *
14907491 TCTTTGGAAGGGAAAGTGGAACTTCCATCTTTTGCTTTCGGTGTTGGTTTC-CCTTTTGAATTTG
1 TCTTTGGAAGGGAAAGTGGAACTTCCATCTTTTGCTTTCGGTGTT-GATTCAACTTTTGAATTTG
* **
14907555 CTTCATTTGCAATTATCAATATTGTCCAAGAATGGTATCACCAATAATGCTTTTTTGTGGGTTTA
65 CTTCATTTGCAATTATCAATATTGTCCAAGAATGCTATCACCAATAATGC-TTTTCATGGGTTTA
14907620 TGGAACTATTCAGTTGGCTCTATTTTCACCTTAGCTTTACTG-CATAAATCTGTGACCTAGTGTG
129 TGGAACTATTCAGTTGGCTCTATTTTCACCTTAGCTTTAC-GACATAAATCTGTGACCTAGTGTG
*
14907684 GAAAATATATACAAACTTTACCTCCAGAAACACAGTTACACATATATTTGTGAATCCATTTCCCC
193 GAAAATATATACAAACTTTACCTCCAGAAACACAGTTACACATATATTTGTGAACCCATTTCCCC
*
14907749 AAGAAAAT
258 AAAAAAAT
14907757 TCTTT
1 TCTTT
14907762 TTTTTCTGAG
Statistics
Matches: 254, Mismatches: 14, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
265 102 0.40
266 151 0.59
267 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (265 bp):
TCTTTGGAAGGGAAAGTGGAACTTCCATCTTTTGCTTTCGGTGTTGATTCAACTTTTGAATTTGC
TTCATTTGCAATTATCAATATTGTCCAAGAATGCTATCACCAATAATGCTTTTCATGGGTTTATG
GAACTATTCAGTTGGCTCTATTTTCACCTTAGCTTTACGACATAAATCTGTGACCTAGTGTGGAA
AATATATACAAACTTTACCTCCAGAAACACAGTTACACATATATTTGTGAACCCATTTCCCCAAA
AAAAT
Found at i:14914701 original size:24 final size:23
Alignment explanation
Indices: 14914658--14914702 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
14914648 GAGAAGAAAA
*
14914658 GAAAAAATGGGAACACATGGTGT
1 GAAAAAATGGGAAAACATGGTGT
*
14914681 GAAAAAATGGGCAAAAGATGGT
1 GAAAAAATGGG-AAAACATGGT
14914703 AGGTTGACTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.47, C:0.07, G:0.31, T:0.16
Consensus pattern (23 bp):
GAAAAAATGGGAAAACATGGTGT
Found at i:14916343 original size:54 final size:54
Alignment explanation
Indices: 14916254--14916365 Score: 134
Period size: 54 Copynumber: 2.1 Consensus size: 54
14916244 AGGTGGGTCT
* * * *
14916254 ACATGGGCACATAAAGTTACAAGGCCTGGCGACACGGCCATGTGACCCTGAGCC
1 ACATAGGCACAGAAAGTTACAAGGCCTGACAACACGGCCATGTGACCCTGAGCC
* * *** *
14916308 ACATAGGCACAGAGAGTTACACGGCCTGACAACACGGTTGTGTGACCCTGAGCT
1 ACATAGGCACAGAAAGTTACAAGGCCTGACAACACGGCCATGTGACCCTGAGCC
14916362 ACAT
1 ACAT
14916366 GGCCTGGTCA
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.29, C:0.28, G:0.27, T:0.17
Consensus pattern (54 bp):
ACATAGGCACAGAAAGTTACAAGGCCTGACAACACGGCCATGTGACCCTGAGCC
Found at i:14921171 original size:23 final size:23
Alignment explanation
Indices: 14921113--14921173 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 23
14921103 ATTATATTTT
* *
14921113 TATATTATTATAAATTTAAAATA
1 TATATTATTTTATATTTAAAATA
** *
14921136 TATAACATCTTATATTTATAAA-A
1 TATATTATTTTATATTTA-AAATA
14921159 TATATTATTTTATAT
1 TATATTATTTTATAT
14921174 CAAGATTTTA
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
23 26 0.90
24 3 0.10
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (23 bp):
TATATTATTTTATATTTAAAATA
Found at i:14921209 original size:23 final size:25
Alignment explanation
Indices: 14921182--14921237 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
14921172 ATCAAGATTT
*
14921182 TATAAAATAT-ATTT-TTCCAAATA
1 TATAAAATATAATTTATACCAAATA
14921205 TATAAAATATAATTTATACCAAATA
1 TATAAAATATAATTTATACCAAATA
14921230 TATAAAAT
1 TATAAAAT
14921238 CTAAAATGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 10 0.33
24 4 0.13
25 16 0.53
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (25 bp):
TATAAAATATAATTTATACCAAATA
Found at i:14921266 original size:17 final size:18
Alignment explanation
Indices: 14921246--14921280 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
14921236 ATCTAAAATG
*
14921246 TATAAAA-ATCATATTTT
1 TATAAAATATCAAATTTT
14921263 TATAAAATATCAAATTTT
1 TATAAAATATCAAATTTT
14921281 ATGTATTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.46
Consensus pattern (18 bp):
TATAAAATATCAAATTTT
Found at i:14921477 original size:20 final size:20
Alignment explanation
Indices: 14921439--14921476 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
14921429 TTAGTGTCAA
14921439 ATAATATTTCTAATATTTTC
1 ATAATATTTCTAATATTTTC
*
14921459 ATAATCTTT-TAATATTTT
1 ATAATATTTCTAATATTTT
14921477 TAGTTTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.34, C:0.08, G:0.00, T:0.58
Consensus pattern (20 bp):
ATAATATTTCTAATATTTTC
Found at i:14924054 original size:17 final size:17
Alignment explanation
Indices: 14924024--14924056 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14924014 TATTTAAAAT
14924024 TTAATTTAATCATAATA
1 TTAATTTAATCATAATA
14924041 TTAACTTTAA-CATAAT
1 TTAA-TTTAATCATAAT
14924057 TTTTATGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (17 bp):
TTAATTTAATCATAATA
Found at i:14928701 original size:27 final size:27
Alignment explanation
Indices: 14928671--14928725 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
14928661 CCCTACTCTT
*
14928671 ATTAAAAATTA-GAAAAATTTTGAAAAA
1 ATTAAAAATTATGAAAAA-TTAGAAAAA
*
14928698 ATTAAAATTTATGAAAAATTAGAAAAA
1 ATTAAAAATTATGAAAAATTAGAAAAA
14928725 A
1 A
14928726 AATTATAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 19 0.76
28 6 0.24
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (27 bp):
ATTAAAAATTATGAAAAATTAGAAAAA
Found at i:14929000 original size:29 final size:27
Alignment explanation
Indices: 14928964--14929057 Score: 73
Period size: 29 Copynumber: 3.3 Consensus size: 27
14928954 TTATATTTTA
14928964 TATAATTTTCTTACAATTTTATAAAATTT
1 TATAATTTT-TTA-AATTTTATAAAATTT
* * *
14928993 TATAATTTTTTTATATTTCTAT-ATATCT
1 TATAA-TTTTTTAAATTT-TATAAAATTT
* *
14929021 TATGATTTTTTATGATTTTTATAAAATTT
1 TATAATTTTTTA--AATTTTATAAAATTT
*
14929050 TACAATTT
1 TATAATTT
14929058 ATATATATTT
Statistics
Matches: 50, Mismatches: 10, Indels: 10
0.71 0.14 0.14
Matches are distributed among these distances:
27 7 0.14
28 15 0.30
29 24 0.48
30 4 0.08
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (27 bp):
TATAATTTTTTAAATTTTATAAAATTT
Found at i:14929002 original size:19 final size:19
Alignment explanation
Indices: 14928980--14929062 Score: 53
Period size: 19 Copynumber: 4.4 Consensus size: 19
14928970 TTTCTTACAA
14928980 TTTTATAAAATTTTATAAT
1 TTTTATAAAATTTTATAAT
* *
14928999 TTTT-TTATATTTCTAT-AT
1 TTTTATAAAATTT-TATAAT
* * ** *
14929017 ATCTTATGATTTTTTATGAT
1 -TTTTATAAAATTTTATAAT
*
14929037 TTTTATAAAATTTTACAAT
1 TTTTATAAAATTTTATAAT
*
14929056 TTATATA
1 TTTTATA
14929063 TATTTACGAT
Statistics
Matches: 48, Mismatches: 12, Indels: 8
0.71 0.18 0.12
Matches are distributed among these distances:
18 8 0.17
19 32 0.67
20 8 0.17
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (19 bp):
TTTTATAAAATTTTATAAT
Found at i:14929178 original size:27 final size:27
Alignment explanation
Indices: 14929074--14929182 Score: 98
Period size: 25 Copynumber: 4.0 Consensus size: 27
14929064 ATTTACGATT
* *
14929074 TTTATATTTTTTTTCTAATTTTTAATA
1 TTTATAGTTTTTTTATAATTTTTAATA
* *
14929101 TTTGAATA-TTTTTATTAAAATTTAATAATA
1 TTT--ATAGTTTTT-TTATAATTT-TTAATA
* * *
14929131 TTTATAGCTTTTAT-TGA-TTTTAATA
1 TTTATAGTTTTTTTATAATTTTTAATA
14929156 TTTATAGTTTTTTTATAATTTTTAATA
1 TTTATAGTTTTTTTATAATTTTTAATA
14929183 AAAGCAGGGG
Statistics
Matches: 64, Mismatches: 11, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
25 17 0.27
26 4 0.06
27 12 0.19
28 9 0.14
29 14 0.22
30 8 0.12
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (27 bp):
TTTATAGTTTTTTTATAATTTTTAATA
Found at i:14929363 original size:88 final size:90
Alignment explanation
Indices: 14929190--14929363 Score: 255
Period size: 88 Copynumber: 2.0 Consensus size: 90
14929180 ATAAAAGCAG
*
14929190 GGGCTTAATTGATTTTCTTGAAAAAGTTTGAGGGTCTTTTTGATGCATTTTAAAAGTTCAAGTAC
1 GGGCTTAATTGATTTTCTTGAAAAAGTTTGAGGGACTTTTTGATGCATTTTAAAAGTTCAAGTAC
* * * *
14929255 CCAATTGAGTGCAAAGAAAAATAGA
66 CCAAATGAATGAAAAAAAAAATAGA
* *
14929280 GGGCTTAATTGCA-TTT-TTGAAAAGGTTTGA-GGACTTTTTGATGCATTTTGAAAGTTCAAGTA
1 GGGCTTAATTG-ATTTTCTTGAAAAAGTTTGAGGGACTTTTTGATGCATTTTAAAAGTTCAAGTA
14929342 CCCAAATGAATGAAAAAAAAAA
65 CCCAAATGAATGAAAAAAAAAA
14929364 GTGACTTAAT
Statistics
Matches: 76, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
88 48 0.63
89 13 0.17
90 14 0.18
91 1 0.01
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (90 bp):
GGGCTTAATTGATTTTCTTGAAAAAGTTTGAGGGACTTTTTGATGCATTTTAAAAGTTCAAGTAC
CCAAATGAATGAAAAAAAAAATAGA
Found at i:14930863 original size:3 final size:3
Alignment explanation
Indices: 14930855--14930891 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
14930845 GGTTTTTATC
14930855 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
14930892 CCATGATTGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:14931651 original size:36 final size:36
Alignment explanation
Indices: 14931608--14931676 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 36
14931598 ATTAGAGTGG
* *
14931608 GAAAGAAAGAGATATGTGAA-AAAGATAGAGAAACAA
1 GAAAGAAAGAGACATG-GAAGAAACATAGAGAAACAA
*
14931644 GAAAGAAATAGACATGGAAGAAACATAGAGAAA
1 GAAAGAAAGAGACATGGAAGAAACATAGAGAAA
14931677 TGAGAGAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
35 3 0.10
36 26 0.90
ACGTcount: A:0.61, C:0.04, G:0.25, T:0.10
Consensus pattern (36 bp):
GAAAGAAAGAGACATGGAAGAAACATAGAGAAACAA
Found at i:14931812 original size:23 final size:21
Alignment explanation
Indices: 14931773--14931814 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 21
14931763 TATCTTTTTT
*
14931773 TTTTTCATATTTGATTTTCTA
1 TTTTTCATATTTCATTTTCTA
14931794 TTTTTCATATACTTCATTTTC
1 TTTTTCATAT--TTCATTTTC
14931815 CTTTCCCATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 10 0.56
23 8 0.44
ACGTcount: A:0.19, C:0.14, G:0.02, T:0.64
Consensus pattern (21 bp):
TTTTTCATATTTCATTTTCTA
Found at i:14939580 original size:27 final size:27
Alignment explanation
Indices: 14939550--14939680 Score: 140
Period size: 27 Copynumber: 4.9 Consensus size: 27
14939540 CTATTATTTT
* * * *
14939550 ATATTATGCCACAAAGGCATTCCTTTA
1 ATATTACGCCACAAAGGCTTTTCTTTC
14939577 ATATTACGCCACAAAGGCTTTTCTTTC
1 ATATTACGCCACAAAGGCTTTTCTTTC
* * *
14939604 ATTTTGCGCCATAAAGGCTTTTCTTTC
1 ATATTACGCCACAAAGGCTTTTCTTTC
* * *
14939631 ATATTATG-C-CATATGCTTTTCTTTC
1 ATATTACGCCACAAAGGCTTTTCTTTC
* *
14939656 ATATTACACCACAAAGGTTTTTCTT
1 ATATTACGCCACAAAGGCTTTTCTT
14939681 ATCTGATGTG
Statistics
Matches: 84, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
25 19 0.23
26 2 0.02
27 63 0.75
ACGTcount: A:0.26, C:0.22, G:0.11, T:0.41
Consensus pattern (27 bp):
ATATTACGCCACAAAGGCTTTTCTTTC
Found at i:14939620 original size:54 final size:52
Alignment explanation
Indices: 14939557--14939672 Score: 124
Period size: 52 Copynumber: 2.2 Consensus size: 52
14939547 TTTATATTAT
14939557 GCCACAAAGGCATTCCTTTAATATTACGCCACAAAGGCTTTTCTTTCATTTTGC
1 GCCACAAAGGCATTCCTTTAATATTACG-C-CAAAGGCTTTTCTTTCATTTTGC
* * * * * * * * *
14939611 GCCATAAAGGCTTTTCTTTCATATTATGCCATATGCTTTTCTTTCATATTAC
1 GCCACAAAGGCATTCCTTTAATATTACGCCAAAGGCTTTTCTTTCATTTTGC
*
14939663 ACCACAAAGG
1 GCCACAAAGG
14939673 TTTTTCTTAT
Statistics
Matches: 51, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
52 27 0.53
53 1 0.02
54 23 0.45
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.37
Consensus pattern (52 bp):
GCCACAAAGGCATTCCTTTAATATTACGCCAAAGGCTTTTCTTTCATTTTGC
Found at i:14941868 original size:26 final size:26
Alignment explanation
Indices: 14941818--14941866 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
14941808 AAGGCATTCC
14941818 TTTCATATTACGCCACAAAGGTTTCT
1 TTTCATATTACGCCACAAAGGTTTCT
* *
14941844 TTTCATATT-TGCCACGAAGGTTT
1 TTTCATATTACGCCACAAAGGTTT
14941867 TCCTTAAGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 12 0.57
26 9 0.43
ACGTcount: A:0.24, C:0.20, G:0.14, T:0.41
Consensus pattern (26 bp):
TTTCATATTACGCCACAAAGGTTTCT
Found at i:14946479 original size:13 final size:13
Alignment explanation
Indices: 14946446--14946491 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
14946436 CCTGCTTTAA
14946446 ATTTTGTTA-TTT
1 ATTTTGTTATTTT
14946458 A--TT-TTATTTT
1 ATTTTGTTATTTT
14946468 ATTTTGTTATTTT
1 ATTTTGTTATTTT
*
14946481 ATTTTATTATT
1 ATTTTGTTATT
14946492 AATTTTAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
9 3 0.10
10 6 0.21
12 3 0.10
13 17 0.59
ACGTcount: A:0.20, C:0.00, G:0.04, T:0.76
Consensus pattern (13 bp):
ATTTTGTTATTTT
Found at i:14954081 original size:20 final size:20
Alignment explanation
Indices: 14954053--14954106 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
14954043 AATACTATGA
* *
14954053 ACCACTCCATTTACTTTCTT
1 ACCATTCCATTTACTTACTT
14954073 ACCATTCCATTTACTTACTT
1 ACCATTCCATTTACTTACTT
* *
14954093 TCCATTTCATTTAC
1 ACCATTCCATTTAC
14954107 CTAGCATAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.22, C:0.31, G:0.00, T:0.46
Consensus pattern (20 bp):
ACCATTCCATTTACTTACTT
Found at i:14957221 original size:18 final size:19
Alignment explanation
Indices: 14957165--14957210 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
14957155 TACAAAAAAA
* *
14957165 AAAAATTCAAAATATTTTT
1 AAAAATCCAAAATATTTAT
14957184 AAAAATCCAAAATATTTAT
1 AAAAATCCAAAATATTTAT
14957203 AAAAATCC
1 AAAAATCC
14957211 CATAATTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAAATCCAAAATATTTAT
Found at i:14957318 original size:17 final size:16
Alignment explanation
Indices: 14957280--14957312 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
14957270 AAAGTTAAAA
*
14957280 AATAAAAATTTTCTAG
1 AATAAAAATTTTATAG
14957296 AATAAAAATTTTATAG
1 AATAAAAATTTTATAG
14957312 A
1 A
14957313 CTTAAATAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (16 bp):
AATAAAAATTTTATAG
Found at i:14957857 original size:27 final size:27
Alignment explanation
Indices: 14957821--14957899 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 27
14957811 TTCCATCCGG
* * *
14957821 GAGTACGCCACAAAGGCTATTCTTTTA
1 GAGTTCGCCACAAAGGCTTTTCTTTCA
* * *
14957848 GAGTTTGCCACAAAGGATTTTCTTCCA
1 GAGTTCGCCACAAAGGCTTTTCTTTCA
* *
14957875 TAGTTCGCCACAATGGCTTTTCTTT
1 GAGTTCGCCACAAAGGCTTTTCTTT
14957900 ACCGACATGT
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (27 bp):
GAGTTCGCCACAAAGGCTTTTCTTTCA
Found at i:14959640 original size:27 final size:27
Alignment explanation
Indices: 14959605--14959683 Score: 92
Period size: 26 Copynumber: 2.9 Consensus size: 27
14959595 CCTTCATGAT
14959605 TCACACACAAAGACGTTCCTTTCATAATG
1 TCAC-CACAAAGACGTTCCTTTCATAA-G
14959634 T-ACCACAAATGA-GTTCCTTTCAT-AG
1 TCACCACAAA-GACGTTCCTTTCATAAG
* *
14959659 TCACCACAAAGGCTTTCCTTTCATA
1 TCACCACAAAGACGTTCCTTTCATA
14959684 TTGCTCTACA
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
25 3 0.07
26 19 0.43
27 17 0.39
28 4 0.09
29 1 0.02
ACGTcount: A:0.32, C:0.28, G:0.10, T:0.30
Consensus pattern (27 bp):
TCACCACAAAGACGTTCCTTTCATAAG
Found at i:14959695 original size:53 final size:52
Alignment explanation
Indices: 14959605--14959732 Score: 123
Period size: 53 Copynumber: 2.4 Consensus size: 52
14959595 CCTTCATGAT
* *
14959605 TCACACACAAAGACGTTCCTTTCATAATGTACCACAAATGAGTTCCTTTCATAG
1 TCAC-CACAAAGGC-TTCCTTTCATAATGTACCACAAAGGAGTTCCTTTCATAG
* * ** * *
14959659 TCACCACAAAGGCTTTCCTTTCATATTGCT-CTACAAAGGCTTTTCTTTCATAT
1 TCACCACAAAGGC-TTCCTTTCATAATG-TACCACAAAGGAGTTCCTTTCATAG
*
14959712 TGCGCCACAAAGGCTTCCTTT
1 T-CACCACAAAGGCTTCCTTT
14959733 ATCTATCGTG
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
53 46 0.74
54 16 0.26
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.34
Consensus pattern (52 bp):
TCACCACAAAGGCTTCCTTTCATAATGTACCACAAAGGAGTTCCTTTCATAG
Found at i:14959701 original size:27 final size:27
Alignment explanation
Indices: 14959587--14959732 Score: 127
Period size: 27 Copynumber: 5.4 Consensus size: 27
14959577 ATTTCCATAG
* *
14959587 AGGCTATCCCTTCATGATT-CACACACAA
1 AGGCTTTCCTTTCAT-ATTGCAC-CACAA
* * * *
14959615 AGACGTTCCTTTCATAATGTACCACAA
1 AGGCTTTCCTTTCATATTGCACCACAA
* ** *
14959642 ATGAGTTCCTTTCATAGT-CACCACAA
1 AGGCTTTCCTTTCATATTGCACCACAA
* *
14959668 AGGCTTTCCTTTCATATTGCTCTACAA
1 AGGCTTTCCTTTCATATTGCACCACAA
* *
14959695 AGGCTTTTCTTTCATATTGCGCCACAA
1 AGGCTTTCCTTTCATATTGCACCACAA
14959722 AGGC-TTCCTTT
1 AGGCTTTCCTTT
14959733 ATCTATCGTG
Statistics
Matches: 95, Mismatches: 21, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
26 27 0.28
27 55 0.58
28 13 0.14
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.34
Consensus pattern (27 bp):
AGGCTTTCCTTTCATATTGCACCACAA
Found at i:14961128 original size:55 final size:58
Alignment explanation
Indices: 14961064--14961211 Score: 160
Period size: 57 Copynumber: 2.6 Consensus size: 58
14961054 ACAAAAACAT
* * *
14961064 CCTTTTAATAAAGATAGCCACAAAGGCTTCC-TTTAACA-TAGTAGCCAC-AAGGCTG
1 CCTTTTAATAGAGATAGCCACAAAGGCTTCCTTTTAACAGAAATAGCCACAAAGGCTG
* * * * * *
14961119 CCTTTTAATAGAGATAGCTAAAAAGGTTTCCTTTTAACAGAAATAGGCACAAATGCTT
1 CCTTTTAATAGAGATAGCCACAAAGGCTTCCTTTTAACAGAAATAGCCACAAAGGCTG
* * *
14961177 CC-TTTAACAGAGATAGCCACAAAGGATTCTTTTTA
1 CCTTTTAATAGAGATAGCCACAAAGGCTTCCTTTTA
14961212 TAGAGATCAC
Statistics
Matches: 76, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
55 27 0.36
56 7 0.09
57 35 0.46
58 7 0.09
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.29
Consensus pattern (58 bp):
CCTTTTAATAGAGATAGCCACAAAGGCTTCCTTTTAACAGAAATAGCCACAAAGGCTG
Found at i:14961151 original size:84 final size:85
Alignment explanation
Indices: 14961063--14961271 Score: 239
Period size: 84 Copynumber: 2.5 Consensus size: 85
14961053 CACAAAAACA
* * *
14961063 TCCTTTTAATAAAGATAGCCACAAAGGCTTCCTTTAACATAG-TAGCCAC-AAGGCTGCCTTTTA
1 TCCTTTTAACAAAGATAGCCACAAAGGCTTCCTTTAACAGAGATAGCCACAAAGGAT-CCTTTTA
*
14961126 ATAGAGAT-AGCTAAAAAGGTT
65 ATAGAGATCA-CCAAAAAGGTT
* * * *
14961147 TCCTTTTAACAGAA-ATAGGCACAAATGCTTCCTTTAACAGAGATAGCCACAAAGGATTCTTTTT
1 TCCTTTTAACA-AAGATAGCCACAAAGGCTTCCTTTAACAGAGATAGCCACAAAGGATCCTTTTA
* *
14961211 ATAGAGATCACCATAAAGTTT
65 ATAGAGATCACCAAAAAGGTT
** *
14961232 TCC-TTTAACAAAGATAGCCATGAAGGCTTCCTTTTACAGA
1 TCCTTTTAACAAAGATAGCCACAAAGGCTTCCTTTAACAGA
14961272 ATCTGCCATA
Statistics
Matches: 105, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
83 2 0.02
84 64 0.61
85 33 0.31
86 6 0.06
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (85 bp):
TCCTTTTAACAAAGATAGCCACAAAGGCTTCCTTTAACAGAGATAGCCACAAAGGATCCTTTTAA
TAGAGATCACCAAAAAGGTT
Found at i:14961192 original size:28 final size:29
Alignment explanation
Indices: 14961063--14961271 Score: 173
Period size: 28 Copynumber: 7.4 Consensus size: 29
14961053 CACAAAAACA
* *
14961063 TCCTTTTAATAAAGATAGCCACAAAGGCT
1 TCCTTTTAACAGAGATAGCCACAAAGGCT
*
14961092 TCC-TTTAACATAG-TAGCCAC-AAGGCT
1 TCCTTTTAACAGAGATAGCCACAAAGGCT
* * * * *
14961118 GCCTTTTAATAGAGATAGCTAAAAAGGTT
1 TCCTTTTAACAGAGATAGCCACAAAGGCT
* * *
14961147 TCCTTTTAACAGAAATAGGCACAAATGCT
1 TCCTTTTAACAGAGATAGCCACAAAGGCT
*
14961176 TCC-TTTAACAGAGATAGCCACAAAGGAT
1 TCCTTTTAACAGAGATAGCCACAAAGGCT
* * * **
14961204 T-CTTTTTATAGAGATCA-CCATAAAGTTT
1 TCCTTTTAACAGAGAT-AGCCACAAAGGCT
* **
14961232 TCC-TTTAACAAAGATAGCCATGAAGGCT
1 TCCTTTTAACAGAGATAGCCACAAAGGCT
14961260 TCCTTTT-ACAGA
1 TCCTTTTAACAGA
14961272 ATCTGCCATA
Statistics
Matches: 140, Mismatches: 32, Indels: 17
0.74 0.17 0.09
Matches are distributed among these distances:
26 8 0.06
27 17 0.12
28 78 0.56
29 37 0.26
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (29 bp):
TCCTTTTAACAGAGATAGCCACAAAGGCT
Found at i:14961267 original size:56 final size:56
Alignment explanation
Indices: 14961175--14961284 Score: 141
Period size: 56 Copynumber: 2.0 Consensus size: 56
14961165 GCACAAATGC
* * *
14961175 TTCCTTTAACAGAGATAGCCACAAAGGATTCTTTTTATAGAGATC-ACCATAAAGTT
1 TTCCTTTAACAAAGATAGCCACAAAGGATTCCTTTTACAGA-ATCTACCATAAAGTT
** * *
14961231 TTCCTTTAACAAAGATAGCCATGAAGGCTTCCTTTTACAGAATCTGCCATAAAG
1 TTCCTTTAACAAAGATAGCCACAAAGGATTCCTTTTACAGAATCTACCATAAAG
14961285 GCACTTATTT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
55 3 0.07
56 43 0.93
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.31
Consensus pattern (56 bp):
TTCCTTTAACAAAGATAGCCACAAAGGATTCCTTTTACAGAATCTACCATAAAGTT
Found at i:14970112 original size:51 final size:51
Alignment explanation
Indices: 14969943--14970142 Score: 210
Period size: 51 Copynumber: 3.9 Consensus size: 51
14969933 TGAAAGTGAA
* *
14969943 AGTGATGATCACGTGTGTAGTACTATGTGCAGGCTACTACATGTACCAGAA-
1 AGTGATGATCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACC-GAAT
* * * * *
14969994 A--GATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGAT
1 AGTGAT-GATCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAT
* * * *
14970044 AGCT-TTGATCACGTGTGTAGTACTATGTGCAGGCAACTACGTGTATCGAAT
1 AG-TGATGATCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAT
* * * *
14970095 AGTGATGGTCACATGTGTAGTACTATGTGTAGGCTACTATGTGAACCG
1 AGTGATGATCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCG
14970143 GTATCATTAA
Statistics
Matches: 119, Mismatches: 24, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
49 5 0.04
50 37 0.31
51 76 0.64
52 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (51 bp):
AGTGATGATCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAT
Found at i:14970143 original size:102 final size:101
Alignment explanation
Indices: 14969948--14970143 Score: 288
Period size: 101 Copynumber: 1.9 Consensus size: 101
14969938 GTGAAAGTGA
* *
14969948 TGATCACGTGTGTAGTACTATGTGCAGGCTACTACATGTACCAGAAAGATAGGTCGCATGTGTAG
1 TGATCACGTGTGTAGTACTATGTGCAGGCAACTACATGTACCAGAAAGATAGGTCACATGTGTAG
*
14970013 TACTATGTGCAGGCTACTATGCGTACCGGATAGCTT
66 TACTATGTGCAGGCTACTATGCGAACCGGATAGCTT
* *
14970049 TGATCACGTGTGTAGTACTATGTGCAGGCAACTACGTGTATC-GAATAG-TGATGGTCACATGTG
1 TGATCACGTGTGTAGTACTATGTGCAGGCAACTACATGTACCAGAA-AGAT-A-GGTCACATGTG
* *
14970112 TAGTACTATGTGTAGGCTACTATGTGAACCGG
63 TAGTACTATGTGCAGGCTACTATGCGAACCGG
14970144 TATCATTAAT
Statistics
Matches: 85, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
100 4 0.05
101 42 0.49
102 39 0.46
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (101 bp):
TGATCACGTGTGTAGTACTATGTGCAGGCAACTACATGTACCAGAAAGATAGGTCACATGTGTAG
TACTATGTGCAGGCTACTATGCGAACCGGATAGCTT
Found at i:14970407 original size:37 final size:38
Alignment explanation
Indices: 14970338--14970410 Score: 103
Period size: 37 Copynumber: 1.9 Consensus size: 38
14970328 ATGTGTGGAA
* **
14970338 TTGAATTGAATATTGACTTGAAAATGGCAAAGTGAATT
1 TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAATT
*
14970376 TTGAATTGAATAGTGA-TTGAAAGTGAAAAAGTGAA
1 TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAA
14970411 ATTACGAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 16 0.52
38 15 0.48
ACGTcount: A:0.42, C:0.03, G:0.23, T:0.32
Consensus pattern (38 bp):
TTGAATTGAATAGTGACTTGAAAATGAAAAAGTGAATT
Found at i:14975533 original size:51 final size:50
Alignment explanation
Indices: 14975414--14975534 Score: 134
Period size: 50 Copynumber: 2.4 Consensus size: 50
14975404 AAAGTGATGG
* * *
14975414 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAAAGATAGG
1 TCACGTGTGTAGTACTATGTACAGGCTACTACGCGTACCAGAAAGATAGA
* * * * * * * *
14975464 TCGCATGTGTAGTACTATGTACCGGCTACTATGCGTACCGGATAGCTTTGA
1 TCACGTGTGTAGTACTATGTACAGGCTACTACGCGTACCAGAAAG-ATAGA
14975515 TCACGTGTGTAGTACTATGT
1 TCACGTGTGTAGTACTATGT
14975535 GTAGGCAACT
Statistics
Matches: 57, Mismatches: 13, Indels: 1
0.80 0.18 0.01
Matches are distributed among these distances:
50 37 0.65
51 20 0.35
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTACAGGCTACTACGCGTACCAGAAAGATAGA
Found at i:14975606 original size:102 final size:101
Alignment explanation
Indices: 14975414--14975606 Score: 255
Period size: 101 Copynumber: 1.9 Consensus size: 101
14975404 AAAGTGATGG
* * *
14975414 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAAAGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGCAGGCAACTACGTGAACCAGAAAGATAGGTCACATGTGTAGTAC
* *
14975479 TATGTACCGGCTACTATGCGTACCGGATAGCTTTGA
66 TATGTACAGGCTACTATGCGAACCGGATAGCTTTGA
* *
14975515 TCACGTGTGTAGTACTATGTGTAGGCAACTACGTGAATC-GAATAG-TGACGGTCACATGTGTAG
1 TCACGTGTGTAGTACTATGTGCAGGCAACTACGTGAACCAGAA-AGAT-A-GGTCACATGTGTAG
** *
14975578 TACTATGTGTAGGCTACTATGTGAACCGG
63 TACTATGTACAGGCTACTATGCGAACCGG
14975607 TATCATTAAT
Statistics
Matches: 79, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
100 4 0.05
101 38 0.48
102 37 0.47
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGCAGGCAACTACGTGAACCAGAAAGATAGGTCACATGTGTAGTAC
TATGTACAGGCTACTATGCGAACCGGATAGCTTTGA
Found at i:14975869 original size:37 final size:38
Alignment explanation
Indices: 14975800--14975872 Score: 105
Period size: 37 Copynumber: 1.9 Consensus size: 38
14975790 ATGTGTGGAA
*
14975800 TTGAATTGAATATTGACTTGAAAATGGCAAAGTGAATT
1 TTGAATTGAATAGTGACTTGAAAATGGCAAAGTGAATT
*
14975838 TTGAATTGAATAGTGA-TTGAAAGT-GCAAAAGTGAA
1 TTGAATTGAATAGTGACTTGAAAATGGC-AAAGTGAA
14975873 ATTATGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 2 0.06
37 15 0.47
38 15 0.47
ACGTcount: A:0.41, C:0.04, G:0.23, T:0.32
Consensus pattern (38 bp):
TTGAATTGAATAGTGACTTGAAAATGGCAAAGTGAATT
Found at i:14981517 original size:26 final size:26
Alignment explanation
Indices: 14981485--14981542 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
14981475 TATTTTATAA
14981485 ATTTCATTATTGAAATGGTATATTAT
1 ATTTCATTATTGAAATGGTATATTAT
14981511 ATTTCATTATTGAAATGGTATATTAT
1 ATTTCATTATTGAAATGGTATATTAT
*
14981537 GTTTCA
1 ATTTCA
14981543 AATTATCGGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.33, C:0.05, G:0.12, T:0.50
Consensus pattern (26 bp):
ATTTCATTATTGAAATGGTATATTAT
Found at i:14982505 original size:10 final size:10
Alignment explanation
Indices: 14982490--14982524 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
14982480 TAACATGTTG
*
14982490 AATTTTAATT
1 AATTTTGATT
14982500 AATTTTGATT
1 AATTTTGATT
14982510 AATTTTGATT
1 AATTTTGATT
14982520 -ATTTT
1 AATTTT
14982525 CGACAGATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 5 0.21
10 19 0.79
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (10 bp):
AATTTTGATT
Found at i:14982669 original size:22 final size:22
Alignment explanation
Indices: 14982643--14982687 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
14982633 ATTATGTGTA
*
14982643 TTAATTCATAATATAAT-TAATT
1 TTAATT-ATAATACAATCTAATT
*
14982665 TTAATTTTAATACAATCTAATT
1 TTAATTATAATACAATCTAATT
14982687 T
1 T
14982688 GGGTTAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.51
Consensus pattern (22 bp):
TTAATTATAATACAATCTAATT
Found at i:14989221 original size:228 final size:229
Alignment explanation
Indices: 14988823--14989276 Score: 775
Period size: 228 Copynumber: 2.0 Consensus size: 229
14988813 CTAGTGTTTG
14988823 CCAACATCAATGCGTCATAGGCGTACTCAAAGGGTTCTTATACTTAGTCTAGTTCTAACACTATA
1 CCAACATCAATGCGTCATAGGCGTACTCAAAGGGTTCTTATACTTAGTCTAGTTCTAACACTATA
* * * *
14988888 CATATTCAAAACTTATCTTGTTTGTCTTATTTCCCTAAACAGTATCTAGACACCAAAGCTTCATC
66 CATATTCAAAACTTATCTCGTTCGTCTTATTTCCCTAAAAAATATCTAGACACCAAAGCTTCATC
* *
14988953 GGGCGAGGTGTTACAATAGCATAACACGCATTCTATTTTCAACATTCACTCATACAATTACATAA
131 GGACGAGGTGTTACAACAGCATAACACGCATTCTATTTTCAACATTCACTCATACAATTACATAA
* *
14989018 CCATCATACTATACTTTTCTAGCTTTGGCATTTT
196 CCAACATACTATAATTTTCTAGCTTTGGCATTTT
* *
14989052 CCAACATCAATGCGTCATAGGCGTGCTCAAAGGGTTTTTATAC-TAGTCTAGTTCTAACACTATA
1 CCAACATCAATGCGTCATAGGCGTACTCAAAGGGTTCTTATACTTAGTCTAGTTCTAACACTATA
* *
14989116 CATATTCAAAAGTTATCTCGTTCGTCTTATTTCCCTAAAAAATATCTAGACACTAAAGCTTCATC
66 CATATTCAAAACTTATCTCGTTCGTCTTATTTCCCTAAAAAATATCTAGACACCAAAGCTTCATC
* *
14989181 GGACGGGGTGTTACAACAGCATAACACGCATTCTATTTTCAACATTCACTCATACAGTTACATAA
131 GGACGAGGTGTTACAACAGCATAACACGCATTCTATTTTCAACATTCACTCATACAATTACATAA
14989246 CCAACATACTATAATTTTCTAGCTTTGGCAT
196 CCAACATACTATAATTTTCTAGCTTTGGCAT
14989277 CATTATTCAA
Statistics
Matches: 211, Mismatches: 14, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
228 170 0.81
229 41 0.19
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.33
Consensus pattern (229 bp):
CCAACATCAATGCGTCATAGGCGTACTCAAAGGGTTCTTATACTTAGTCTAGTTCTAACACTATA
CATATTCAAAACTTATCTCGTTCGTCTTATTTCCCTAAAAAATATCTAGACACCAAAGCTTCATC
GGACGAGGTGTTACAACAGCATAACACGCATTCTATTTTCAACATTCACTCATACAATTACATAA
CCAACATACTATAATTTTCTAGCTTTGGCATTTT
Found at i:14995690 original size:13 final size:15
Alignment explanation
Indices: 14995672--14995703 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
14995662 CTATAGGGGA
14995672 CACATGG-C-TGTGT
1 CACATGGCCGTGTGT
14995685 CACATGGCCGTGTGT
1 CACATGGCCGTGTGT
14995700 CACA
1 CACA
14995704 CATGGCTGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 1 0.06
15 9 0.53
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.25
Consensus pattern (15 bp):
CACATGGCCGTGTGT
Found at i:14998976 original size:25 final size:25
Alignment explanation
Indices: 14998948--14999003 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
14998938 AAGTATTATA
*
14998948 CAGAGAACATAAATGTGCTAATAAT
1 CAGAGAACACAAATGTGCTAATAAT
* **
14998973 CAGAGAGCACCGATGTGCTAATAAT
1 CAGAGAACACAAATGTGCTAATAAT
14998998 CAGAGA
1 CAGAGA
14999004 GCACGCTAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.43, C:0.16, G:0.21, T:0.20
Consensus pattern (25 bp):
CAGAGAACACAAATGTGCTAATAAT
Found at i:14999004 original size:25 final size:25
Alignment explanation
Indices: 14998960--14999007 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
14998950 GAGAACATAA
14998960 ATGTGCTAATAATCAGAGAGCACCG
1 ATGTGCTAATAATCAGAGAGCACCG
14998985 ATGTGCTAATAATCAGAGAGCAC
1 ATGTGCTAATAATCAGAGAGCAC
14999008 GCTAAACTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.21
Consensus pattern (25 bp):
ATGTGCTAATAATCAGAGAGCACCG
Found at i:15000055 original size:50 final size:50
Alignment explanation
Indices: 14999913--15000245 Score: 269
Period size: 50 Copynumber: 6.6 Consensus size: 50
14999903 GAATATAACA
* * * ** * * * *
14999913 TGCCAAAGCTATGTCCCAGACATAGTCTTACATGGGATTTTTCCTGT-AC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAG
* * * * **
14999962 TGCCAATGCCATATCCCAGATATGGTTTTACATGAGAGTTCTCATATCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAG
* ** * **
15000012 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAG
* * * *
15000062 TGCCAACGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAG
* * * *
15000112 TGCCAACGCTATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATTTTAATAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A---T--CAG
* * *
15000168 TGCCAATGCCATGTCCTAGACATGGTCTTACACT-GG--CTCACATATCAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACA-TGGGACCTCTCATATCAG
* *
15000216 TGTCGATGCCATGTCCCAGACATGGTCTTA
1 TGCCAATGCCATGTCCCAGACATGGTCTTA
15000246 TACGAGATCA
Statistics
Matches: 232, Mismatches: 44, Indels: 17
0.79 0.15 0.06
Matches are distributed among these distances:
48 29 0.12
49 36 0.16
50 127 0.55
53 1 0.00
54 7 0.03
56 31 0.13
57 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAG
Found at i:15000257 original size:48 final size:49
Alignment explanation
Indices: 15000173--15000310 Score: 139
Period size: 42 Copynumber: 3.0 Consensus size: 49
15000163 AATAATGCCA
* * * *
15000173 ATGCCATGTCCTAGACATGGTCTTACACTG-GCTCACATATCAATGTCG
1 ATGCCATGTCCCAGACATGGTCTTATACGGAGATCACATATCAATGTCG
*
15000221 ATGCCATGTCCCAGACATGGTCTTATAC-GAGAT--C--A-C-ATGCCG
1 ATGCCATGTCCCAGACATGGTCTTATACGGAGATCACATATCAATGTCG
* * *
15000263 ATGCCATATCCCAGATATGGTCTTATACGGAAATCACATATCACATGT
1 ATGCCATGTCCCAGACATGGTCTTATACGGAGATCACATATCA-ATGT
15000311 TGCCACGGTC
Statistics
Matches: 73, Mismatches: 8, Indels: 16
0.75 0.08 0.16
Matches are distributed among these distances:
42 31 0.42
43 5 0.07
44 1 0.01
45 1 0.01
46 1 0.01
47 2 0.03
48 29 0.40
50 3 0.04
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTATACGGAGATCACATATCAATGTCG
Found at i:15006056 original size:13 final size:14
Alignment explanation
Indices: 15006038--15006075 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
15006028 ATTCCCAAAG
15006038 TTATGGTTTAGGA-
1 TTATGGTTTAGGAT
*
15006051 TTATGGTTTATGAT
1 TTATGGTTTAGGAT
*
15006065 TTACGGTTTAG
1 TTATGGTTTAG
15006076 ACTTTAGGGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.21, C:0.03, G:0.26, T:0.50
Consensus pattern (14 bp):
TTATGGTTTAGGAT
Found at i:15006288 original size:28 final size:28
Alignment explanation
Indices: 15006251--15006318 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
15006241 TAATTGACGA
* *
15006251 GTTTAGGATTTATGGTTTATGGTTTGGG
1 GTTTAGGATTTATAGTTTATAGTTTGGG
*
15006279 GTTTGGGATTTATAGTTTATAGTTTGGG
1 GTTTAGGATTTATAGTTTATAGTTTGGG
*
15006307 GTTTAAGATTTA
1 GTTTAGGATTTA
15006319 CGATTAAGGC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.19, C:0.00, G:0.31, T:0.50
Consensus pattern (28 bp):
GTTTAGGATTTATAGTTTATAGTTTGGG
Found at i:15006467 original size:15 final size:15
Alignment explanation
Indices: 15006447--15006476 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
15006437 GATATTTTAG
*
15006447 AATATAAATGTAAAT
1 AATATAAATATAAAT
15006462 AATATAAATATAAAT
1 AATATAAATATAAAT
15006477 TATTATTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (15 bp):
AATATAAATATAAAT
Found at i:15006723 original size:21 final size:20
Alignment explanation
Indices: 15006683--15006720 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
15006673 AATATATTGA
*
15006683 TGTATTTATTTTTTAAAATG
1 TGTAATTATTTTTTAAAATG
15006703 TGTAATTATTTTTTAAAA
1 TGTAATTATTTTTTAAAA
15006721 ATGCATTACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (20 bp):
TGTAATTATTTTTTAAAATG
Found at i:15007277 original size:19 final size:20
Alignment explanation
Indices: 15007236--15007279 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
15007226 AATTGTCATC
*
15007236 TCCCCTAAATCCCTAAAATT
1 TCCCCTAAATCCCTAAAAGT
*
15007256 TCCCCT-AATCCCTAACAGT
1 TCCCCTAAATCCCTAAAAGT
15007275 TCCCC
1 TCCCC
15007280 AAACCCGACG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.27, C:0.43, G:0.02, T:0.27
Consensus pattern (20 bp):
TCCCCTAAATCCCTAAAAGT
Found at i:15007646 original size:6 final size:6
Alignment explanation
Indices: 15007635--15007751 Score: 234
Period size: 6 Copynumber: 19.5 Consensus size: 6
15007625 CGTTGAAATT
15007635 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
15007683 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
15007731 TATATG TATATG TATATG TAT
1 TATATG TATATG TATATG TAT
15007752 TAAAACTAAA
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 111 1.00
ACGTcount: A:0.33, C:0.00, G:0.16, T:0.50
Consensus pattern (6 bp):
TATATG
Found at i:15009649 original size:27 final size:27
Alignment explanation
Indices: 15009611--15009674 Score: 119
Period size: 27 Copynumber: 2.4 Consensus size: 27
15009601 AAAAAAAATA
15009611 ACCAAAATATTATAACTTTTTTTATTT
1 ACCAAAATATTATAACTTTTTTTATTT
*
15009638 ACCAAAATATTATAATTTTTTTTATTT
1 ACCAAAATATTATAACTTTTTTTATTT
15009665 ACCAAAATAT
1 ACCAAAATAT
15009675 ACCAAAAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.48
Consensus pattern (27 bp):
ACCAAAATATTATAACTTTTTTTATTT
Found at i:15010021 original size:15 final size:15
Alignment explanation
Indices: 15010001--15010030 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
15009991 AACTATTCTC
15010001 ATTTAATAAACTCTA
1 ATTTAATAAACTCTA
15010016 ATTTAATAAACTCTA
1 ATTTAATAAACTCTA
15010031 TTTTGGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (15 bp):
ATTTAATAAACTCTA
Found at i:15010064 original size:23 final size:23
Alignment explanation
Indices: 15010038--15010109 Score: 64
Period size: 23 Copynumber: 3.2 Consensus size: 23
15010028 CTATTTTGGT
15010038 AATTTGATGAGAATAGTTTATTA
1 AATTTGATGAGAATAGTTTATTA
*
15010061 AA-TT-A--A-AATAGAGTTATTAA
1 AATTTGATGAGAATAG-TTTATT-A
15010081 GTAATTTGATGAGAATAGTTTATTA
1 --AATTTGATGAGAATAGTTTATTA
15010106 AATT
1 AATT
15010110 AAAATAGATT
Statistics
Matches: 38, Mismatches: 2, Indels: 18
0.66 0.03 0.31
Matches are distributed among these distances:
18 5 0.13
19 6 0.16
20 1 0.03
21 1 0.03
22 4 0.11
23 8 0.21
24 1 0.03
25 1 0.03
26 6 0.16
27 5 0.13
ACGTcount: A:0.43, C:0.00, G:0.15, T:0.42
Consensus pattern (23 bp):
AATTTGATGAGAATAGTTTATTA
Found at i:15010131 original size:45 final size:45
Alignment explanation
Indices: 15010036--15010124 Score: 169
Period size: 45 Copynumber: 2.0 Consensus size: 45
15010026 CTCTATTTTG
15010036 GTAATTTGATGAGAATAGTTTATTAAATTAAAATAGAGTTATTAA
1 GTAATTTGATGAGAATAGTTTATTAAATTAAAATAGAGTTATTAA
*
15010081 GTAATTTGATGAGAATAGTTTATTAAATTAAAATAGATTTATTA
1 GTAATTTGATGAGAATAGTTTATTAAATTAAAATAGAGTTATTA
15010125 CTTAATTAGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.44, C:0.00, G:0.15, T:0.42
Consensus pattern (45 bp):
GTAATTTGATGAGAATAGTTTATTAAATTAAAATAGAGTTATTAA
Found at i:15010801 original size:19 final size:18
Alignment explanation
Indices: 15010762--15010801 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
15010752 CTGCCACAGG
*
15010762 TTTTTTTTTTTTGTAGGT
1 TTTTTTTTTTTTGTAGAT
*
15010780 TTTTGTTTTTTTTGTATAT
1 TTTT-TTTTTTTTGTAGAT
15010799 TTT
1 TTT
15010802 GGTAAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.07, C:0.00, G:0.12, T:0.80
Consensus pattern (18 bp):
TTTTTTTTTTTTGTAGAT
Found at i:15010825 original size:26 final size:28
Alignment explanation
Indices: 15010795--15010859 Score: 98
Period size: 29 Copynumber: 2.4 Consensus size: 28
15010785 TTTTTTTTGT
15010795 ATATTTTGGTAAAT-AAAAAAA-TTATA
1 ATATTTTGGTAAATAAAAAAAAGTTATA
*
15010821 ATATTTTGATAAATAAAAAAAATGTTATA
1 ATATTTTGGTAAATAAAAAAAA-GTTATA
15010850 ATATTTTGGT
1 ATATTTTGGT
15010860 TATTTTTTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
26 13 0.38
27 7 0.21
29 14 0.41
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.42
Consensus pattern (28 bp):
ATATTTTGGTAAATAAAAAAAAGTTATA
Found at i:15010851 original size:29 final size:26
Alignment explanation
Indices: 15010795--15010857 Score: 90
Period size: 26 Copynumber: 2.3 Consensus size: 26
15010785 TTTTTTTTGT
*
15010795 ATATTTTGGTAAATAAAAAAATTATA
1 ATATTTTGATAAATAAAAAAATTATA
15010821 ATATTTTGATAAATAAAAAAAATGTTATA
1 ATATTTTGATAAAT-AAAAAAA--TTATA
15010850 ATATTTTG
1 ATATTTTG
15010858 GTTATTTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
26 13 0.39
27 7 0.21
29 13 0.39
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.41
Consensus pattern (26 bp):
ATATTTTGATAAATAAAAAAATTATA
Found at i:15011228 original size:20 final size:20
Alignment explanation
Indices: 15011200--15011328 Score: 121
Period size: 20 Copynumber: 6.8 Consensus size: 20
15011190 TTCTAATTAC
*
15011200 ATAAAATTAAGATAACTTAT
1 ATAATATTAAGATAACTTAT
*
15011220 ATAATATTAAGATAAAATT-T
1 ATAATATTAAGAT-AACTTAT
* *
15011240 CT-A-ATT-ACATAACTTAT
1 ATAATATTAAGATAACTTAT
15011257 ATAATATTAAGATAACTTAT
1 ATAATATTAAGATAACTTAT
*
15011277 ATAATATTAAGATCAAATT-T
1 ATAATATTAAGAT-AACTTAT
* *
15011297 CT-A-ATT-ACATAACTTAT
1 ATAATATTAAGATAACTTAT
15011314 ATAATATTAAGATAA
1 ATAATATTAAGATAA
15011329 AATTTCTAAT
Statistics
Matches: 86, Mismatches: 13, Indels: 20
0.72 0.11 0.17
Matches are distributed among these distances:
16 8 0.09
17 10 0.12
18 8 0.09
19 8 0.09
20 44 0.51
21 8 0.09
ACGTcount: A:0.50, C:0.07, G:0.04, T:0.39
Consensus pattern (20 bp):
ATAATATTAAGATAACTTAT
Found at i:15011295 original size:57 final size:57
Alignment explanation
Indices: 15011200--15011328 Score: 240
Period size: 57 Copynumber: 2.3 Consensus size: 57
15011190 TTCTAATTAC
*
15011200 ATAAAATTAAGATAACTTATATAATATTAAGATAAAATTTCTAATTACATAACTTAT
1 ATAATATTAAGATAACTTATATAATATTAAGATAAAATTTCTAATTACATAACTTAT
*
15011257 ATAATATTAAGATAACTTATATAATATTAAGATCAAATTTCTAATTACATAACTTAT
1 ATAATATTAAGATAACTTATATAATATTAAGATAAAATTTCTAATTACATAACTTAT
15011314 ATAATATTAAGATAA
1 ATAATATTAAGATAA
15011329 AATTTCTAAT
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 70 1.00
ACGTcount: A:0.50, C:0.07, G:0.04, T:0.39
Consensus pattern (57 bp):
ATAATATTAAGATAACTTATATAATATTAAGATAAAATTTCTAATTACATAACTTAT
Found at i:15011318 original size:37 final size:37
Alignment explanation
Indices: 15011268--15011379 Score: 170
Period size: 37 Copynumber: 3.0 Consensus size: 37
15011258 TAATATTAAG
15011268 ATAACTTATATAATATTAAGATCAAATTTCTAATTAC
1 ATAACTTATATAATATTAAGATCAAATTTCTAATTAC
*
15011305 ATAACTTATATAATATTAAGATAAAATTTCTAATTAC
1 ATAACTTATATAATATTAAGATCAAATTTCTAATTAC
* ** * *
15011342 ATAACGTATATAATATTAATTTCTAATTTCTAAGTAC
1 ATAACTTATATAATATTAAGATCAAATTTCTAATTAC
15011379 A
1 A
15011380 CATCAATTTC
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.46, C:0.10, G:0.04, T:0.41
Consensus pattern (37 bp):
ATAACTTATATAATATTAAGATCAAATTTCTAATTAC
Found at i:15011363 original size:30 final size:30
Alignment explanation
Indices: 15011329--15011608 Score: 162
Period size: 30 Copynumber: 9.1 Consensus size: 30
15011319 ATTAAGATAA
15011329 AATTTCTAATTACATAACGTATATAATATT
1 AATTTCTAATTACATAACGTATATAATATT
* * *
15011359 AATTTCTAATTTC-TAA-GTACACATCAATTTCT
1 AATTTCTAATTACATAACGT--ATAT-AATAT-T
* * * * *
15011391 AATTT-TATATAACTTATAC-AATAGTAAGATAA
1 AATTTCTA-ATTACATA-ACGTATA-TAATAT-T
15011423 AATTTCTAATTACATAACGTATATAATATT
1 AATTTCTAATTACATAACGTATATAATATT
* * *
15011453 AATTTCTAATTTC-TAA-GTACACATCAATTTCT
1 AATTTCTAATTACATAACGT--ATAT-AATAT-T
* * * * *
15011485 AATTT-TATATAACTTATAC-AATATTAAGATAA
1 AATTTCTA-ATTACATA-ACGTATA-TAATAT-T
* *
15011517 AATTTCGAATTACATAACTTATATAATATT
1 AATTTCTAATTACATAACGTATATAATATT
* *
15011547 AATTTCTAATAACATAACTTATATAATATT
1 AATTTCTAATTACATAACGTATATAATATT
* *
15011577 AATTTCTCATTACATAACTTATATAATATT
1 AATTTCTAATTACATAACGTATATAATATT
15011607 AA
1 AA
15011609 GATAAAATTT
Statistics
Matches: 191, Mismatches: 37, Indels: 44
0.70 0.14 0.16
Matches are distributed among these distances:
28 4 0.02
29 6 0.03
30 88 0.46
31 26 0.14
32 56 0.29
33 9 0.05
34 2 0.01
ACGTcount: A:0.43, C:0.11, G:0.03, T:0.42
Consensus pattern (30 bp):
AATTTCTAATTACATAACGTATATAATATT
Found at i:15011403 original size:94 final size:94
Alignment explanation
Indices: 15011211--15011631 Score: 509
Period size: 94 Copynumber: 4.4 Consensus size: 94
15011201 TAAAATTAAG
* **
15011211 ATAACTTATATAATATTAAGATAAAATTTCTAATTACATAACTTATATAATATTAA--GATAACT
1 ATAACTTATATAATATTAAGATAAAATTTCTAATTACATAACGTATATAATATTAATTTCTAA-T
* * * *
15011274 TATATAA-TATTAAGATCAAATTTCTAA--TTAC
65 T-TCTAAGTA--CACATC-AATTTCTAATTTTAT
15011305 ATAACTTATATAATATTAAGATAAAATTTCTAATTACATAACGTATATAATATTAATTTCTAATT
1 ATAACTTATATAATATTAAGATAAAATTTCTAATTACATAACGTATATAATATTAATTTCTAATT
15011370 TCTAAGTACACATCAATTTCTAATTTTAT
66 TCTAAGTACACATCAATTTCTAATTTTAT
* *
15011399 ATAACTTATACAATAGTAAGATAAAATTTCTAATTACATAACGTATATAATATTAATTTCTAATT
1 ATAACTTATATAATATTAAGATAAAATTTCTAATTACATAACGTATATAATATTAATTTCTAATT
15011464 TCTAAGTACACATCAATTTCTAATTTTAT
66 TCTAAGTACACATCAATTTCTAATTTTAT
* * * *
15011493 ATAACTTATACAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAATTTCTAATA
1 ATAACTTATATAATATTAAGATAAAATTTCTAATTACATAACGTATATAATATTAATTTCTAATT
* * * * *
15011558 ACATAACT-TATAT-AATAT-TAATTTCTCATT
66 TC-TAAGTACACATCAATTTCTAATTT-T-A-T
15011588 ACATAACTTATATAATATTAAGATAAAATTTCGTAA-TACATAAC
1 --ATAACTTATATAATATTAAGATAAAATTTC-TAATTACATAAC
15011632 TTAAATAAAT
Statistics
Matches: 295, Mismatches: 20, Indels: 21
0.88 0.06 0.06
Matches are distributed among these distances:
92 15 0.05
93 9 0.03
94 220 0.75
95 9 0.03
96 3 0.01
97 37 0.13
98 2 0.01
ACGTcount: A:0.45, C:0.10, G:0.03, T:0.41
Consensus pattern (94 bp):
ATAACTTATATAATATTAAGATAAAATTTCTAATTACATAACGTATATAATATTAATTTCTAATT
TCTAAGTACACATCAATTTCTAATTTTAT
Found at i:15011535 original size:37 final size:33
Alignment explanation
Indices: 15011493--15011649 Score: 116
Period size: 30 Copynumber: 4.7 Consensus size: 33
15011483 CTAATTTTAT
*
15011493 ATAACTTATACAATATTAAGATAAAATTTCGAATTAC
1 ATAACTTATATAATATT-A-AT--AATTTCGAATTAC
* *
15011530 ATAACTTATATAATA-T--TAATTTCTAATAAC
1 ATAACTTATATAATATTAATAATTTCGAATTAC
15011560 ATAACTTATATAATATTAAT--TTCTC--ATTAC
1 ATAACTTATATAATATTAATAATT-TCGAATTAC
15011590 ATAACTTATATAATATTAAGATAAAATTTCGTAA-TAC
1 ATAACTTATATAATATT-A-AT--AATTTCG-AATTAC
*
15011627 ATAACTTAAATAA-ATTACATAAT
1 ATAACTTATATAATATTA-ATAAT
15011650 ACACAACTTA
Statistics
Matches: 101, Mismatches: 6, Indels: 30
0.74 0.04 0.22
Matches are distributed among these distances:
30 47 0.47
31 4 0.04
32 5 0.05
33 4 0.04
35 5 0.05
36 6 0.06
37 29 0.29
38 1 0.01
ACGTcount: A:0.48, C:0.10, G:0.03, T:0.39
Consensus pattern (33 bp):
ATAACTTATATAATATTAATAATTTCGAATTAC
Found at i:15011648 original size:9 final size:9
Alignment explanation
Indices: 15011624--15012071 Score: 158
Period size: 9 Copynumber: 53.3 Consensus size: 9
15011614 AATTTCGTAA
15011624 TACATAACT
1 TACATAACT
* *
15011633 TAAATAAAT
1 TACATAACT
15011642 TACATAA--
1 TACATAACT
*
15011649 TACACAACTTAT
1 TACATAAC---T
15011661 TACATAACT
1 TACATAACT
*
15011670 TAAATAACT
1 TACATAACT
15011679 TACATAA--
1 TACATAACT
15011686 TACATAACT
1 TACATAACT
*
15011695 TTCATAACT
1 TACATAACT
*
15011704 TACATTA-T
1 TACATAACT
*
15011712 T-CACAACT
1 TACATAACT
*
15011720 TGGCCGATTAA-T
1 T--AC-A-TAACT
*
15011732 TA-AT-ATT
1 TACATAACT
15011739 ATACATAACT
1 -TACATAACT
15011749 TACAT-A--
1 TACATAACT
15011755 T--ATAACT
1 TACATAACT
15011762 TACATAACT
1 TACATAACT
*
15011771 TACATAGCT
1 TACATAACT
*
15011780 TACAT-TC-
1 TACATAACT
*
15011787 TACACAACT
1 TACATAACT
*
15011796 TACATAACA
1 TACATAACT
15011805 TACATAA--
1 TACATAACT
15011812 TACATAACT
1 TACATAACT
15011821 TACATAACT
1 TACATAACT
*
15011830 AACATAA--
1 TACATAACT
*
15011837 TACATAGCT
1 TACATAACT
15011846 TACATAA--
1 TACATAACT
*
15011853 TAAATAACT
1 TACATAACT
* **
15011862 TA-TTAAAA
1 TACATAACT
15011870 TAC--AACT
1 TACATAACT
*
15011877 TACATAGCT
1 TACATAACT
*
15011886 TACATGA--
1 TACATAACT
15011893 TACATAACT
1 TACATAACT
* *
15011902 TACGTAGCT
1 TACATAACT
15011911 TACATAA--
1 TACATAACT
*
15011918 TAAATAACT
1 TACATAACT
**
15011927 TACATAAAA
1 TACATAACT
15011936 TAC--AACT
1 TACATAACT
15011943 TACATAA--
1 TACATAACT
15011950 -A-A-AAGTCT
1 TACATAA--CT
*
15011958 ATGACATAGCT
1 -T-ACATAACT
15011969 TACATAA--
1 TACATAACT
15011976 TACATAACT
1 TACATAACT
15011985 TACA-AAGCT
1 TACATAA-CT
15011994 TACATAA--
1 TACATAACT
*
15012001 TAAATAACT
1 TACATAACT
**
15012010 TACATAAAA
1 TACATAACT
15012019 TAC--AACT
1 TACATAACT
*
15012026 TACATAGCT
1 TACATAACT
*
15012035 TACTTAA--
1 TACATAACT
*
15012042 TACGTAACT
1 TACATAACT
15012051 TACATAACT
1 TACATAACT
*
15012060 TACATAATT
1 TACATAACT
15012069 TAC
1 TAC
15012072 TTAATACAGA
Statistics
Matches: 322, Mismatches: 59, Indels: 116
0.65 0.12 0.23
Matches are distributed among these distances:
4 4 0.01
5 2 0.01
6 3 0.01
7 87 0.27
8 17 0.05
9 186 0.58
10 5 0.02
11 4 0.01
12 11 0.03
13 3 0.01
ACGTcount: A:0.46, C:0.18, G:0.03, T:0.32
Consensus pattern (9 bp):
TACATAACT
Found at i:15011665 original size:37 final size:37
Alignment explanation
Indices: 15011624--15011695 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
15011614 AATTTCGTAA
15011624 TACATAACTTAAATAAATTACATAATACACAACTTAT
1 TACATAACTTAAATAAATTACATAATACACAACTTAT
* *
15011661 TACATAACTTAAATAACTTACATAATACATAACTT
1 TACATAACTTAAATAAATTACATAATACACAACTT
15011696 TCATAACTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (37 bp):
TACATAACTTAAATAAATTACATAATACACAACTTAT
Found at i:15011689 original size:25 final size:25
Alignment explanation
Indices: 15011661--15011708 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
15011651 CACAACTTAT
15011661 TACATAACTTAAATAACTTACATAA
1 TACATAACTTAAATAACTTACATAA
**
15011686 TACATAACTTTCATAACTTACAT
1 TACATAACTTAAATAACTTACAT
15011709 TATTCACAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.46, C:0.19, G:0.00, T:0.35
Consensus pattern (25 bp):
TACATAACTTAAATAACTTACATAA
Found at i:15011719 original size:25 final size:25
Alignment explanation
Indices: 15011673--15011720 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
15011663 CATAACTTAA
*
15011673 ATAACTTACATAATACATAACTTTC
1 ATAACTTACATAATACACAACTTTC
* *
15011698 ATAACTTACATTATTCACAACTT
1 ATAACTTACATAATACACAACTT
15011721 GGCCGATTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.42, C:0.21, G:0.00, T:0.38
Consensus pattern (25 bp):
ATAACTTACATAATACACAACTTTC
Found at i:15011761 original size:13 final size:13
Alignment explanation
Indices: 15011743--15011767 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15011733 AATATTATAC
15011743 ATAACTTACATAT
1 ATAACTTACATAT
15011756 ATAACTTACATA
1 ATAACTTACATA
15011768 ACTTACATAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (13 bp):
ATAACTTACATAT
Found at i:15011796 original size:25 final size:25
Alignment explanation
Indices: 15011762--15012066 Score: 143
Period size: 25 Copynumber: 11.6 Consensus size: 25
15011752 ATATATAACT
* * **
15011762 TACATAACTTACATAGCTTACATTC
1 TACATAACTTACATAACATACATAA
*
15011787 TACACAACTTACATAACATACATAA
1 TACATAACTTACATAACATACATAA
15011812 TACATAACTTACATAAC-TAACATAA
1 TACATAACTTACATAACAT-ACATAA
* *
15011837 TACATAGCTTACATAATAAATAACTTATTAA
1 TACATAACTTACAT-A-ACAT-AC--A-TAA
* * * * * *
15011868 AATACAACTTACATAGCTTACATGA
1 TACATAACTTACATAACATACATAA
* * *
15011893 TACATAACTTACGTAGCTTACATAA
1 TACATAACTTACATAACATACATAA
* *
15011918 TAAATAACTTACATAAAATACAACTTACA
1 TACATAACTTACATAACATAC-A--TA-A
* * * *
15011947 TAAAAAAGTCTATGACATAGCTTACATAA
1 TACATAA--CT-T-ACATAACATACATAA
*
15011976 TACATAACTTACA-AAGCTTACATAA
1 TACATAACTTACATAA-CATACATAA
* * *
15012001 TAAATAACTTACATAAAATACA-ACT
1 TACATAACTTACATAACATACATA-A
* * *
15012026 TACATAGCTTAC-TTA-ATACGTAA
1 TACATAACTTACATAACATACATAA
15012049 CTTACATAACTTACATAA
1 --TACATAACTTACATAA
15012067 TTTACTTAAT
Statistics
Matches: 214, Mismatches: 44, Indels: 43
0.71 0.15 0.14
Matches are distributed among these distances:
23 4 0.02
24 6 0.03
25 142 0.66
26 8 0.04
27 3 0.01
28 8 0.04
29 14 0.07
30 4 0.02
31 15 0.07
32 2 0.01
33 8 0.04
ACGTcount: A:0.47, C:0.19, G:0.04, T:0.30
Consensus pattern (25 bp):
TACATAACTTACATAACATACATAA
Found at i:15011840 original size:16 final size:16
Alignment explanation
Indices: 15011739--15012079 Score: 110
Period size: 16 Copynumber: 21.3 Consensus size: 16
15011729 AATTAATATT
15011739 ATACATAACTTACAT-
1 ATACATAACTTACATA
15011754 AT--ATAACTTACATA
1 ATACATAACTTACATA
* *
15011768 ACTTACATAGCTTACATT
1 A--TACATAACTTACATA
* *
15011786 CTACACAACTTACATAA
1 ATACATAACTTACAT-A
15011803 CATACATAA--TACATA
1 -ATACATAACTTACATA
*
15011818 ACTTACATAACTAACATA
1 A--TACATAACTTACATA
*
15011836 ATACATAGCTTACATA
1 ATACATAACTTACATA
* * *
15011852 ATAAATAACTTATTAAA
1 ATACATAACTTA-CATA
15011869 ATAC--AACTTACATA
1 ATACATAACTTACATA
* *
15011883 GCTTACATGA--TACATA
1 --ATACATAACTTACATA
* *
15011899 ACTTACGTAGCTTACATA
1 A--TACATAACTTACATA
*
15011917 ATAAATAACTTACATA
1 ATACATAACTTACATA
* * *
15011933 AAATACAACTTACATA
1 ATACATAACTTACATA
*
15011949 A-A-A-AA-GT-C-T-
1 ATACATAACTTACATA
*
15011958 ATGACATAGCTTACATA
1 AT-ACATAACTTACATA
15011975 ATACATAACTTACA-A
1 ATACATAACTTACATA
*
15011990 AGCTTACATAA--TAAATA
1 A---TACATAACTTACATA
**
15012007 ACTTACATAAAATACA-A
1 A--TACATAACTTACATA
* * *
15012024 CTTACATAGCTTACTTA
1 -ATACATAACTTACATA
*
15012041 ATACGTAACTTACATA
1 ATACATAACTTACATA
* *
15012057 ACTTACATAATTTACTTA
1 A--TACATAACTTACATA
15012075 ATACA
1 ATACA
15012080 GAAATATATA
Statistics
Matches: 240, Mismatches: 48, Indels: 75
0.66 0.13 0.21
Matches are distributed among these distances:
9 1 0.00
10 1 0.00
11 2 0.01
12 2 0.01
13 14 0.06
14 6 0.03
15 13 0.05
16 137 0.57
17 11 0.05
18 53 0.22
ACGTcount: A:0.47, C:0.18, G:0.04, T:0.31
Consensus pattern (16 bp):
ATACATAACTTACATA
Found at i:15011850 original size:34 final size:33
Alignment explanation
Indices: 15011756--15011949 Score: 113
Period size: 34 Copynumber: 5.9 Consensus size: 33
15011746 ACTTACATAT
*
15011756 ATAACTTACATAACTTACATAGCTTACAT-TCTAC
1 ATAACTTACATAA--TACATAGCTTACATAACTAC
* *
15011790 ACAACTTACATAACATACATA--ATACATAACTTAC
1 ATAACTTACAT-A-ATACATAGCTTACATAAC-TAC
* *
15011824 ATAACTAACATAATACATAGCTTACATAA-TAA
1 ATAACTTACATAATACATAGCTTACATAACTAC
* * *
15011856 ATAACTTATTAAAATACA-A-CTTACATAGCTTAC
1 ATAACTTA-CATAATACATAGCTTACATAAC-TAC
* * *
15011889 ATGA--TACATAACTTACGTAGCTTACATAA-TAA
1 ATAACTTACATAA--TACATAGCTTACATAACTAC
15011921 ATAACTTACATAAAATACA-A-CTTACATAA
1 ATAACTTACAT--AATACATAGCTTACATAA
15011950 AAAAGTCTAT
Statistics
Matches: 123, Mismatches: 20, Indels: 36
0.69 0.11 0.20
Matches are distributed among these distances:
30 3 0.02
31 10 0.08
32 39 0.32
33 16 0.13
34 51 0.41
35 1 0.01
36 3 0.02
ACGTcount: A:0.47, C:0.19, G:0.03, T:0.30
Consensus pattern (33 bp):
ATAACTTACATAATACATAGCTTACATAACTAC
Found at i:15011985 original size:83 final size:82
Alignment explanation
Indices: 15011790--15012031 Score: 312
Period size: 83 Copynumber: 3.0 Consensus size: 82
15011780 TACATTCTAC
* * * * * *
15011790 ACAACTTACATAACATACATAATACATAACTTACATAACTAACATAATACATAGCTTACATAATA
1 ACAACTTACATAGCTTACATAATACATAACTTACATAGCTTACATAATAAATAACTTACATAA-A
* *
15011855 A-ATAACTTA-TTAAAAT
65 ATACAACTTACATAAAAT
* *
15011871 ACAACTTACATAGCTTACATGATACATAACTTACGTAGCTTACATAATAAATAACTTACATAAAA
1 ACAACTTACATAGCTTACATAATACATAACTTACATAGCTTACATAATAAATAACTTACATAAAA
15011936 TACAACTTACATAAAA-
66 TACAACTTACATAAAAT
* *
15011952 A-AGTCTATGACATAGCTTACATAATACATAACTTACAAAGCTTACATAATAAATAACTTACATA
1 ACA-ACT-T-ACATAGCTTACATAATACATAACTTACATAGCTTACATAATAAATAACTTACATA
15012016 AAATACAACTTACATA
63 AAATACAACTTACATA
15012032 GCTTACTTAA
Statistics
Matches: 142, Mismatches: 14, Indels: 8
0.87 0.09 0.05
Matches are distributed among these distances:
80 3 0.02
81 65 0.46
82 6 0.04
83 68 0.48
ACGTcount: A:0.50, C:0.18, G:0.04, T:0.29
Consensus pattern (82 bp):
ACAACTTACATAGCTTACATAATACATAACTTACATAGCTTACATAATAAATAACTTACATAAAA
TACAACTTACATAAAAT
Found at i:15012079 original size:25 final size:24
Alignment explanation
Indices: 15011968--15012079 Score: 77
Period size: 25 Copynumber: 4.5 Consensus size: 24
15011958 ATGACATAGC
15011968 TTACATAATACATAACTTACA-AA
1 TTACATAATACATAACTTACATAA
*
15011991 GCTTACATAATAAATAACTTACATAAA
1 --TTACATAATACATAACTTACAT-AA
* * * *
15012018 ATACA-ACTTACATAGCTTACTTAA
1 TTACATA-ATACATAACTTACATAA
*
15012042 -TACGTAACTTACATAACTTACATAA
1 TTACATAA--TACATAACTTACATAA
*
15012067 TTTACTTAATACA
1 -TTACATAATACA
15012080 GAAATATATA
Statistics
Matches: 68, Mismatches: 11, Indels: 16
0.72 0.12 0.17
Matches are distributed among these distances:
23 3 0.04
24 4 0.06
25 53 0.78
27 8 0.12
ACGTcount: A:0.46, C:0.18, G:0.03, T:0.33
Consensus pattern (24 bp):
TTACATAATACATAACTTACATAA
Found at i:15015856 original size:86 final size:86
Alignment explanation
Indices: 15015698--15015901 Score: 234
Period size: 86 Copynumber: 2.4 Consensus size: 86
15015688 TTTTTCGAAA
* * * *
15015698 AAGCGCCGCTAAAGAACATGACCTTTAGCGGCGCTTGTGGGAAAAGTGCCGCTAAAAGTCAGGAT
1 AAGCGCCGCTAAAGAACATGACCTTTAGCGGCACTTGTGGGAAAAGCGCCGCTAAAAGACAGGAG
*
15015763 CTATAGCGGCGATTGTGGGAT
66 CTATAGCGGCGATTGTGGAAT
* *
15015784 AAGCGCCGCTAAAGAACATGAGCC-TTAGCGGCATTTGTGGGATAAA-CGCCGCT-AAAGAACAT
1 AAGCGCCGCTAAAGAACATGA-CCTTTAGCGGCACTTGTGGGA-AAAGCGCCGCTAAAAG-ACAG
* *
15015846 GAGCTTTAGCGGCGTTTGTGGAAT
63 GAGCTATAGCGGCGATTGTGGAAT
* ** * *
15015870 AAGCGCTGCTAAAGGTCTTGACCTTTAACGGC
1 AAGCGCCGCTAAAGAACATGACCTTTAGCGGC
15015902 GTCTATTTCT
Statistics
Matches: 100, Mismatches: 14, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
85 6 0.06
86 89 0.89
87 5 0.05
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (86 bp):
AAGCGCCGCTAAAGAACATGACCTTTAGCGGCACTTGTGGGAAAAGCGCCGCTAAAAGACAGGAG
CTATAGCGGCGATTGTGGAAT
Found at i:15015896 original size:43 final size:43
Alignment explanation
Indices: 15015698--15015903 Score: 211
Period size: 43 Copynumber: 4.8 Consensus size: 43
15015688 TTTTTCGAAA
*
15015698 AAGCGCCGCTAAAGAACATGACCTTTAGCGGCGCTTGTGGGAA-
1 AAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTGT-GGAAT
* * * * * * *
15015741 AAGTGCCGCTAAA-AGTCAGGATCTATAGCGGCGATTGTGGGAT
1 AAGCGCCGCTAAAGA-ACATGACCTTTAGCGGCGTTTGTGGAAT
* *
15015784 AAGCGCCGCTAAAGAACATGAGCC-TTAGCGGCATTTGTGGGAT
1 AAGCGCCGCTAAAGAACATGA-CCTTTAGCGGCGTTTGTGGAAT
* *
15015827 AAACGCCGCTAAAGAACATGAGCTTTAGCGGCGTTTGTGGAAT
1 AAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTGTGGAAT
* ** * *
15015870 AAGCGCTGCTAAAGGTCTTGACCTTTAACGGCGT
1 AAGCGCCGCTAAAGAACATGACCTTTAGCGGCGT
15015904 CTATTTCTAT
Statistics
Matches: 133, Mismatches: 25, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
42 5 0.04
43 126 0.95
44 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (43 bp):
AAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTGTGGAAT
Found at i:15017917 original size:32 final size:32
Alignment explanation
Indices: 15017844--15018077 Score: 175
Period size: 32 Copynumber: 7.3 Consensus size: 32
15017834 AATGACTGCA
* * * * *
15017844 AGCCATAAGT-ACAGTAATTTGATTGGCACAA
1 AGCCATCAGTAACAGTGATATGATCGGCACAC
* *
15017875 AGCCATCAGTAGCAGTGATATGATCGACACAC
1 AGCCATCAGTAACAGTGATATGATCGGCACAC
* * * * *
15017907 GGCCATCAGTAACGGTAACATGATCGGCACAA
1 AGCCATCAGTAACAGTGATATGATCGGCACAC
* * * *
15017939 AACCATCAGTAGCAATGATATGATTGGCACAC
1 AGCCATCAGTAACAGTGATATGATCGGCACAC
* * * * *
15017971 ATCCATCAGTAATAGTGAAATGATCGGTACAT
1 AGCCATCAGTAACAGTGATATGATCGGCACAC
** * * *
15018003 AGCCATTGGTAACGGTAATATGATCGGCACAA
1 AGCCATCAGTAACAGTGATATGATCGGCACAC
* * * *
15018035 AGTCATCAGTAATAGT-ACTATGATCGACACAA
1 AGCCATCAGTAACAGTGA-TATGATCGGCACAC
15018067 AGCCATCAGTA
1 AGCCATCAGTA
15018078 GCATCACAGC
Statistics
Matches: 154, Mismatches: 47, Indels: 3
0.75 0.23 0.01
Matches are distributed among these distances:
31 10 0.06
32 144 0.94
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.22
Consensus pattern (32 bp):
AGCCATCAGTAACAGTGATATGATCGGCACAC
Found at i:15017948 original size:64 final size:64
Alignment explanation
Indices: 15017863--15018080 Score: 233
Period size: 64 Copynumber: 3.4 Consensus size: 64
15017853 TACAGTAATT
* * * **
15017863 TGATTGGCACAAAGCCATCAGTAGCAGTGATATGATCGACACACGGCCATCAGTAACGGTAACA
1 TGATCGGCACAAAGCCATCAGTAGCAGTGATATGATCGGCACACAGCCATCAGTAATAGTAACA
* * * *
15017927 TGATCGGCACAAAACCATCAGTAGCAATGATATGATTGGCACACATCCATCAGTAATAGTGAA-A
1 TGATCGGCACAAAGCCATCAGTAGCAGTGATATGATCGGCACACAGCCATCAGTAATAGT-AACA
* * ** * * * * *
15017991 TGATCGGTACATAGCCATTGGTAACGGTAATATGATCGGCACAAAGTCATCAGTAATAGT-ACTA
1 TGATCGGCACAAAGCCATCAGTAGCAGTGATATGATCGGCACACAGCCATCAGTAATAGTAAC-A
*
15018055 TGATCGACACAAAGCCATCAGTAGCA
1 TGATCGGCACAAAGCCATCAGTAGCA
15018081 TCACAGCAAA
Statistics
Matches: 122, Mismatches: 29, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
62 1 0.01
64 119 0.98
65 2 0.02
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.22
Consensus pattern (64 bp):
TGATCGGCACAAAGCCATCAGTAGCAGTGATATGATCGGCACACAGCCATCAGTAATAGTAACA
Found at i:15018027 original size:96 final size:96
Alignment explanation
Indices: 15017863--15018077 Score: 243
Period size: 96 Copynumber: 2.2 Consensus size: 96
15017853 TACAGTAATT
* * *
15017863 TGATTGGCACAAAGCCATCAGTAGCAGTGATATGATCGACACACGGCCATCAGTAACGGTAACAT
1 TGATTGGCACAAAGCCATCAGTAACAGTGAAATGATCGACACACAGCCATCAGTAACGGTAACAT
15017928 GATCGGCACAAAACCATCAGTAGCAATGATA
66 GATCGGCACAAAACCATCAGTAGCAATGATA
* * * ** * ** *
15017959 TGATTGGCACACATCCATCAGTAATAGTGAAATGATCGGTACATAGCCATTGGTAACGGTAATAT
1 TGATTGGCACAAAGCCATCAGTAACAGTGAAATGATCGACACACAGCCATCAGTAACGGTAACAT
** ** *
15018024 GATCGGCACAAAGTCATCAGTAATAGT-ACTA
66 GATCGGCACAAAACCATCAGTAGCAATGA-TA
* *
15018055 TGATCGACACAAAGCCATCAGTA
1 TGATTGGCACAAAGCCATCAGTA
15018078 GCATCACAGC
Statistics
Matches: 97, Mismatches: 21, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
95 1 0.01
96 96 0.99
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.22
Consensus pattern (96 bp):
TGATTGGCACAAAGCCATCAGTAACAGTGAAATGATCGACACACAGCCATCAGTAACGGTAACAT
GATCGGCACAAAACCATCAGTAGCAATGATA
Found at i:15018401 original size:27 final size:27
Alignment explanation
Indices: 15018352--15018874 Score: 339
Period size: 27 Copynumber: 19.5 Consensus size: 27
15018342 GGCAAAAGTA
* *
15018352 GTCA-TTTACCC-ACGAGGGCATTACG
1 GTCATTTTACCCTACAAGGGTATTACG
*
15018377 GTCATTTTACCCTACAAGGGTATTACA
1 GTCATTTTACCCTACAAGGGTATTACG
* *
15018404 GTCATTTTACCCTATAGGGGTATTACG
1 GTCATTTTACCCTACAAGGGTATTACG
* * *
15018431 ATCATTTTACCCTAC-AGGAGCATTACT
1 GTCATTTTACCCTACAAGG-GTATTACG
* * **
15018458 GTCATTTTACCCTATAGGGGCGTTACG
1 GTCATTTTACCCTACAAGGGTATTACG
* * * *
15018485 ATCATTTTACCTTACATGGGCATTACG
1 GTCATTTTACCCTACAAGGGTATTACG
* *
15018512 GTCATTTTACCTGTACAAGGGTATTATG
1 GTCATTTTACC-CTACAAGGGTATTACG
* * * *
15018540 ATCATTATACCCTACAAGGGCATTACA
1 GTCATTTTACCCTACAAGGGTATTACG
* * *
15018567 CTCATTTTACCCTATAGGGGTATTACG
1 GTCATTTTACCCTACAAGGGTATTACG
* *
15018594 GTCATTTTACCCTAC-AGAGGCATTACA
1 GTCATTTTACCCTACAAG-GGTATTACG
* *
15018621 GTCATTTTACCTTAC-AGTGATATTACG
1 GTCATTTTACCCTACAAG-GGTATTACG
* *
15018648 ATCATTTTACCCTAC-AGAGGTATTACA
1 GTCATTTTACCCTACAAG-GGTATTACG
* * ** *
15018675 ATCATTTTATCCTAGGA-GGTATTATG
1 GTCATTTTACCCTACAAGGGTATTACG
* *** *
15018701 GTTATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTACAAGGGTATTACG
* * *
15018728 GT-ATTCTACCCTACGAGGGTATTTCG
1 GTCATTTTACCCTACAAGGGTATTACG
* * *** * * *
15018754 ATTATTTTACCCTATGGGGGCATTTCA
1 GTCATTTTACCCTACAAGGGTATTACG
* ** *
15018781 GTTATTTTACCC-ATTGAGGGTATTTCG
1 GTCATTTTACCCTA-CAAGGGTATTACG
** *
15018808 GTCATTTTACCC-ATCAATAGTATTTCG
1 GTCATTTTACCCTA-CAAGGGTATTACG
* * *
15018835 ATCATTTTACCC-ATCGAGGGTATTTCG
1 GTCATTTTACCCTA-CAAGGGTATTACG
15018862 GTCATTTTACCCT
1 GTCATTTTACCCT
15018875 TCGGGGGTAT
Statistics
Matches: 400, Mismatches: 87, Indels: 19
0.79 0.17 0.04
Matches are distributed among these distances:
25 4 0.01
26 52 0.13
27 320 0.80
28 24 0.06
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCCTACAAGGGTATTACG
Found at i:15018436 original size:54 final size:54
Alignment explanation
Indices: 15018371--15018819 Score: 392
Period size: 54 Copynumber: 8.3 Consensus size: 54
15018361 CCACGAGGGC
* *
15018371 ATTACGGTCATTTTACCCTACAAGGGTATTACAGTCATTTTACCCTATAGGGGT
1 ATTACGATCATTTTACCCTACAAGGGCATTACAGTCATTTTACCCTATAGGGGT
* *
15018425 ATTACGATCATTTTACCCTAC-AGGAGCATTACTGTCATTTTACCCTATAGGGGC
1 ATTACGATCATTTTACCCTACAAGG-GCATTACAGTCATTTTACCCTATAGGGGT
* * * * * * *
15018479 GTTACGATCATTTTACCTTACATGGGCATTACGGTCATTTTACCTGTACAAGGGT
1 ATTACGATCATTTTACCCTACAAGGGCATTACAGTCATTTTACC-CTATAGGGGT
* * *
15018534 ATTATGATCATTATACCCTACAAGGGCATTACACTCATTTTACCCTATAGGGGT
1 ATTACGATCATTTTACCCTACAAGGGCATTACAGTCATTTTACCCTATAGGGGT
* * * * *
15018588 ATTACGGTCATTTTACCCTAC-AGAGGCATTACAGTCATTTTACCTTACAGTGAT
1 ATTACGATCATTTTACCCTACAAG-GGCATTACAGTCATTTTACCCTATAGGGGT
* * *
15018642 ATTACGATCATTTTACCCTAC-AGAGGTATTACAATCATTTTATCC--TAGGAGGT
1 ATTACGATCATTTTACCCTACAAG-GGCATTACAGTCATTTTACCCTATAGG-GGT
* * * *** * * * * *
15018695 ATTATGGTTATTTTACCCTATGGGGGTATTTCGGT-ATTCTACCCTA-CGAGGGT
1 ATTACGATCATTTTACCCTACAAGGGCATTACAGTCATTTTACCCTATAG-GGGT
* * *** * * *
15018748 ATTTCGATTATTTTACCCTATGGGGGCATTTCAGTTATTTTACCC-ATTGAGGGT
1 ATTACGATCATTTTACCCTACAAGGGCATTACAGTCATTTTACCCTATAG-GGGT
* *
15018802 ATTTCGGTCATTTTACCC
1 ATTACGATCATTTTACCC
15018820 ATCAATAGTA
Statistics
Matches: 326, Mismatches: 58, Indels: 22
0.80 0.14 0.05
Matches are distributed among these distances:
52 9 0.03
53 67 0.21
54 205 0.63
55 45 0.14
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (54 bp):
ATTACGATCATTTTACCCTACAAGGGCATTACAGTCATTTTACCCTATAGGGGT
Found at i:15018682 original size:163 final size:163
Alignment explanation
Indices: 15018378--15018683 Score: 445
Period size: 163 Copynumber: 1.9 Consensus size: 163
15018368 GGCATTACGG
* * *
15018378 TCATTTTACCCTACAAGGGTATTACAGTCATTTTACCCTATAGGGGTATTACGATCATTTTACCC
1 TCATTATACCCTACAAGGGCATTACACTCATTTTACCCTATAGGGGTATTACGATCATTTTACCC
* * * * *
15018443 TACAGGAGCATTACTGTCATTTTACCCTATAGGGGCGTTACGATCATTTTACCTTACATGGGCAT
66 TACAGGAGCATTACAGTCATTTTACCCTACAGGGACATTACGATCATTTTACCCTACATGGGCAT
**
15018508 TACGGTCATTTTACCTGTACAAGGGTATTATGA
131 TACAATCATTTTACCTGTACAAGGGTATTATGA
*
15018541 TCATTATACCCTACAAGGGCATTACACTCATTTTACCCTATAGGGGTATTACGGTCATTTTACCC
1 TCATTATACCCTACAAGGGCATTACACTCATTTTACCCTATAGGGGTATTACGATCATTTTACCC
* * * *
15018606 TACA-GAGGCATTACAGTCATTTTACCTTACAGTGATATTACGATCATTTTACCCTACA-GAGGT
66 TACAGGA-GCATTACAGTCATTTTACCCTACAGGGACATTACGATCATTTTACCCTACATG-GGC
15018669 ATTACAATCATTTTA
129 ATTACAATCATTTTA
15018684 TCCTAGGAGG
Statistics
Matches: 126, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
162 3 0.02
163 123 0.98
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (163 bp):
TCATTATACCCTACAAGGGCATTACACTCATTTTACCCTATAGGGGTATTACGATCATTTTACCC
TACAGGAGCATTACAGTCATTTTACCCTACAGGGACATTACGATCATTTTACCCTACATGGGCAT
TACAATCATTTTACCTGTACAAGGGTATTATGA
Found at i:15018723 original size:53 final size:53
Alignment explanation
Indices: 15018641--15018819 Score: 130
Period size: 53 Copynumber: 3.4 Consensus size: 53
15018631 CTTACAGTGA
* * ** * * * *
15018641 TATTACGATCATTTTACCCTACAGAGGTATTACAATCATTTTATCCTAGGA-GG
1 TATTTCGATTATTTTACCCTATGGGGGTATTACAAT-ATTCTACCCTACGAGGG
* * **
15018694 TATTAT-GGTTATTTTACCCTATGGGGGTATTTCGGTATTCTACCCTACGAGGG
1 TATT-TCGATTATTTTACCCTATGGGGGTATTACAATATTCTACCCTACGAGGG
* * * * *
15018747 TATTTCGATTATTTTACCCTATGGGGGCATTTCAGTTATTTTACCC-ATTGAGGG
1 TATTTCGATTATTTTACCCTATGGGGGTATTACA-ATATTCTACCCTA-CGAGGG
* *
15018801 TATTTCGGTCATTTTACCC
1 TATTTCGATTATTTTACCC
15018820 ATCAATAGTA
Statistics
Matches: 101, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
52 12 0.12
53 58 0.57
54 31 0.31
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.40
Consensus pattern (53 bp):
TATTTCGATTATTTTACCCTATGGGGGTATTACAATATTCTACCCTACGAGGG
Found at i:15027728 original size:17 final size:17
Alignment explanation
Indices: 15027702--15027747 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 17
15027692 CACCACTATT
15027702 AAAATATTAATTTTTTA
1 AAAATATTAATTTTTTA
*
15027719 AAAATTTTAATTTTTTTTA
1 AAAATATTAA--TTTTTTA
15027738 AAAA-ATTAAT
1 AAAATATTAAT
15027748 GATGCCGCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
16 1 0.04
17 9 0.36
18 4 0.16
19 11 0.44
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
AAAATATTAATTTTTTA
Found at i:15029157 original size:7 final size:7
Alignment explanation
Indices: 15029140--15029169 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
15029130 TAATAATTAG
15029140 AAATA-A
1 AAATATA
15029146 AAATATA
1 AAATATA
15029153 AAATATA
1 AAATATA
15029160 AAATATA
1 AAATATA
15029167 AAA
1 AAA
15029170 AAATAAAGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.22
7 18 0.78
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (7 bp):
AAATATA
Found at i:15047978 original size:14 final size:14
Alignment explanation
Indices: 15047959--15047992 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
15047949 TTACTATTTC
15047959 ATTATTATATTGTT
1 ATTATTATATTGTT
15047973 ATTATTATATTGTT
1 ATTATTATATTGTT
15047987 ATTATT
1 ATTATT
15047993 TGGATATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (14 bp):
ATTATTATATTGTT
Found at i:15056795 original size:20 final size:20
Alignment explanation
Indices: 15056770--15056809 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
15056760 TTCTCAATAT
15056770 TCTCCATTATCTTTGATTGA
1 TCTCCATTATCTTTGATTGA
15056790 TCTCCATTATCTTTGATTGA
1 TCTCCATTATCTTTGATTGA
15056810 GAATAATCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.10, T:0.50
Consensus pattern (20 bp):
TCTCCATTATCTTTGATTGA
Found at i:15070749 original size:43 final size:43
Alignment explanation
Indices: 15070636--15070750 Score: 130
Period size: 43 Copynumber: 2.7 Consensus size: 43
15070626 TATGATTTCG
*
15070636 TGTAAGACCACATCTGGGACGTTGGCATCGATTTAAGATTTACG
1 TGTAAGACCACATCTGGGACGTTGGCATCGATTT-AGATTTACA
* *
15070680 TGTAAGACC-CTGTCTAGGACAG-TGGCATCGTTATTT-GA-TTACA
1 TGTAAGACCAC-ATCTGGGAC-GTTGGCATCG--ATTTAGATTTACA
15070723 TGTAAGACCACATCTGGGACGTTGGCAT
1 TGTAAGACCACATCTGGGACGTTGGCAT
15070751 TGTACGAGCT
Statistics
Matches: 60, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
42 1 0.02
43 27 0.45
44 27 0.45
45 1 0.02
46 4 0.07
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (43 bp):
TGTAAGACCACATCTGGGACGTTGGCATCGATTTAGATTTACA
Found at i:15077888 original size:22 final size:20
Alignment explanation
Indices: 15077844--15077918 Score: 79
Period size: 18 Copynumber: 3.9 Consensus size: 20
15077834 TAATAATACC
15077844 AAAAAAAAGAAAGAAAAA-G
1 AAAAAAAAGAAAGAAAAAGG
*
15077863 --AAAAGAGAAAGGAAAATAGG
1 AAAAAAAAGAAA-GAAAA-AGG
*
15077883 AAAAAAAAGAAAGAGAAAGG
1 AAAAAAAAGAAAGAAAAAGG
15077903 -AAAAAAA-AAAGAAAAA
1 AAAAAAAAGAAAGAAAAA
15077919 AATAACTTAA
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
17 9 0.19
18 13 0.28
19 8 0.17
20 4 0.09
21 4 0.09
22 9 0.19
ACGTcount: A:0.79, C:0.00, G:0.20, T:0.01
Consensus pattern (20 bp):
AAAAAAAAGAAAGAAAAAGG
Found at i:15077917 original size:28 final size:29
Alignment explanation
Indices: 15077845--15077918 Score: 98
Period size: 28 Copynumber: 2.6 Consensus size: 29
15077835 AATAATACCA
15077845 AAAAAAAGAAAGAAAAAGAAAAGAGAAAGG
1 AAAAAAA-AAAGAAAAAGAAAAGAGAAAGG
**
15077875 AAAATAGGAAA-AAAAAG-AAAGAGAAAGG
1 AAAA-AAAAAAGAAAAAGAAAAGAGAAAGG
15077903 AAAAAAAAAAGAAAAA
1 AAAAAAAAAAGAAAAA
15077919 AATAACTTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
27 4 0.11
28 20 0.53
29 6 0.16
30 7 0.18
31 1 0.03
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.01
Consensus pattern (29 bp):
AAAAAAAAAAGAAAAAGAAAAGAGAAAGG
Found at i:15082192 original size:22 final size:22
Alignment explanation
Indices: 15082162--15082203 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
15082152 AGACCAAAAC
*
15082162 AGGCTTTTAGCGGCGCTTTTTT
1 AGGCCTTTAGCGGCGCTTTTTT
*
15082184 AGGCCTTTAGTGGCGCTTTT
1 AGGCCTTTAGCGGCGCTTTT
15082204 AAGCGCCGCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.10, C:0.19, G:0.29, T:0.43
Consensus pattern (22 bp):
AGGCCTTTAGCGGCGCTTTTTT
Found at i:15082434 original size:43 final size:43
Alignment explanation
Indices: 15082302--15082632 Score: 456
Period size: 43 Copynumber: 7.8 Consensus size: 43
15082292 AGAAATAAAT
*
15082302 GCCGTTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
* * *
15082345 GCCGCTAAAAACC----CCTTTAGCGGCGCTTTTCCCTCAATC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
* * * *
15082384 ACTGCTAAAGACAATGACCTTTAGCGGCAG-TTTTACCACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGC-GCTTTTCCCACAAAC
*
15082427 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTACCACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
* *
15082470 GCCGCTAAAGACCATGACCTTTAGCGGCGATTTTCCCACAAGC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
* * *
15082513 GCCGCTAAGGACCATGACCTTTAGCAGCGTTTTTCCCACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
*
15082556 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCTACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
* * *
15082599 GCCGCTAAAGACCATGACTTTTAGTGGCGTTTTT
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTT
15082633 AAAAAACACC
Statistics
Matches: 254, Mismatches: 28, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
39 33 0.13
42 1 0.00
43 219 0.86
44 1 0.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (43 bp):
GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
Found at i:15082849 original size:19 final size:19
Alignment explanation
Indices: 15082825--15082862 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
15082815 GCAAAAATGT
*
15082825 TAAAAGTTAAAATGATAAA
1 TAAAAGTCAAAATGATAAA
15082844 TAAAAGTCAAAATGATAAA
1 TAAAAGTCAAAATGATAAA
15082863 AATATTTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.63, C:0.03, G:0.11, T:0.24
Consensus pattern (19 bp):
TAAAAGTCAAAATGATAAA
Found at i:15088632 original size:34 final size:34
Alignment explanation
Indices: 15088589--15088710 Score: 140
Period size: 34 Copynumber: 3.6 Consensus size: 34
15088579 AAGTTATTTA
*
15088589 TGTATTATGTAAGCTATGTAAGTGT-TGTAAGTGT
1 TGTATTATGTAAGTTATGTAAGT-TATGTAAGTGT
* * *
15088623 TGTATTATGTAAGTTATATAAGTTATGTAGACT-A
1 TGTATTATGTAAGTTATGTAAGTTATGTA-AGTGT
* * * *
15088657 TGTATTATGCAAGTTATTTAAGTTGTGCAAGTGT
1 TGTATTATGTAAGTTATGTAAGTTATGTAAGTGT
15088691 TGTATTATGTAAGTTATGTA
1 TGTATTATGTAAGTTATGTA
15088711 TTATATAAGT
Statistics
Matches: 73, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
33 3 0.04
34 68 0.93
35 2 0.03
ACGTcount: A:0.30, C:0.03, G:0.22, T:0.45
Consensus pattern (34 bp):
TGTATTATGTAAGTTATGTAAGTTATGTAAGTGT
Found at i:15088727 original size:68 final size:68
Alignment explanation
Indices: 15088556--15088728 Score: 199
Period size: 68 Copynumber: 2.5 Consensus size: 68
15088546 TATTAAGTAA
* * *
15088556 ATTATGTAAGTTATGTATTACATAAGTTATTTATGTATTATGTAAGCTATGTAAGTGTTGTAAGT
1 ATTATGTAAGTTATGTATTATATAAG-T-TTTATGTATTATGCAAGCTATGTAAGTGTTGCAAGT
15088621 GTTGT
64 GTTGT
* * ** * *
15088626 ATTATGTAAGTTATATAAGTTATGT-AG-ACTATGTATTATGCAAGTTATTTAAGT-TGTGCAAG
1 ATTATGTAAGTTATGT-A-TTATATAAGTTTTATGTATTATGCAAGCTATGTAAGTGT-TGCAAG
15088688 TGTTGT
63 TGTTGT
15088694 ATTATGTAAGTTATGTATTATATAAGTTTTATGTA
1 ATTATGTAAGTTATGTATTATATAAGTTTTATGTA
15088729 AAATATGTAA
Statistics
Matches: 85, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
66 5 0.06
67 4 0.05
68 54 0.64
70 15 0.18
71 3 0.04
72 4 0.05
ACGTcount: A:0.31, C:0.03, G:0.19, T:0.47
Consensus pattern (68 bp):
ATTATGTAAGTTATGTATTATATAAGTTTTATGTATTATGCAAGCTATGTAAGTGTTGCAAGTGT
TGT
Found at i:15088835 original size:34 final size:35
Alignment explanation
Indices: 15088695--15089046 Score: 163
Period size: 34 Copynumber: 10.3 Consensus size: 35
15088685 AAGTGTTGTA
* * *
15088695 TTATGTAAGT-TATGTATTATATAAGTTTTATGTAAA
1 TTATGTAAGTGTATGTATTATGTAAG--CTATGTAAG
* * * *
15088731 ATATGTAAGTTGTAT-T-TTATGAAAGTTATATAAG
1 TTATGTAAG-TGTATGTATTATGTAAGCTATGTAAG
* * *
15088765 TTATGT-AG-GCTATGTATTATGCAAGTTATTTAAG
1 TTATGTAAGTG-TATGTATTATGTAAGCTATGTAAG
* *
15088799 TTGTGTAAGTGT-TGTATTATGTAAGATATGTAAG
1 TTATGTAAGTGTATGTATTATGTAAGCTATGTAAG
* * * *
15088833 -T-TGT-ATTTTATGTAAGTTCTGT-A-CTATGTATG
1 TTATGTAAGTGTATGT-A-TTATGTAAGCTATGTAAG
* **
15088865 TTATGTAAGT-TGTGTAGAATGTAAGCTATGTAAG
1 TTATGTAAGTGTATGTATTATGTAAGCTATGTAAG
* *
15088899 TTATGTAAGTG-GTGTATTATGTAAGTTATGTAAG
1 TTATGTAAGTGTATGTATTATGTAAGCTATGTAAG
* * *
15088933 TTATGTAAGTTATTATGTAAGTTATGCAAGCTTATATATAAG
1 TTATGTAAG-T-GTATGT-A-TTATGTAAGC---TATGTAAG
* *
15088975 TTATGT-A-T-TATGTTATTATGT-A-TTATGTAAT
1 TTATGTAAGTGTATG-TATTATGTAAGCTATGTAAG
* * *
15089006 TTAT-TATGT-TAT-TA-TATATAAGATATGTAAG
1 TTATGTAAGTGTATGTATTATGTAAGCTATGTAAG
15089037 TTATGTAAGT
1 TTATGTAAGT
15089047 TATTATGTAA
Statistics
Matches: 246, Mismatches: 40, Indels: 64
0.70 0.11 0.18
Matches are distributed among these distances:
29 4 0.02
30 4 0.02
31 25 0.10
32 27 0.11
33 9 0.04
34 111 0.45
35 7 0.03
36 21 0.09
37 10 0.04
38 5 0.02
39 9 0.04
41 1 0.00
42 13 0.05
ACGTcount: A:0.32, C:0.02, G:0.19, T:0.47
Consensus pattern (35 bp):
TTATGTAAGTGTATGTATTATGTAAGCTATGTAAG
Found at i:15088887 original size:41 final size:41
Alignment explanation
Indices: 15088802--15088889 Score: 97
Period size: 41 Copynumber: 2.1 Consensus size: 41
15088792 ATTTAAGTTG
* ***
15088802 TGTAAGTGTTGTATTATGTAAGATATGTAAGTTGTATTTTA
1 TGTAAGTGTTGTACTATGTAAGATATGTAAGTTGTATAGAA
* * *
15088843 TGTAAGT-TCTGTACTATGTATGTTATGTAAGTTGTGTAGAA
1 TGTAAGTGT-TGTACTATGTAAGATATGTAAGTTGTATAGAA
15088884 TGTAAG
1 TGTAAG
15088890 CTATGTAAGT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
40 1 0.03
41 38 0.97
ACGTcount: A:0.28, C:0.02, G:0.24, T:0.45
Consensus pattern (41 bp):
TGTAAGTGTTGTACTATGTAAGATATGTAAGTTGTATAGAA
Found at i:15088939 original size:25 final size:25
Alignment explanation
Indices: 15088695--15088958 Score: 111
Period size: 25 Copynumber: 10.6 Consensus size: 25
15088685 AAGTGTTGTA
*
15088695 TTATGTAAGTTATGTATTATATAAG
1 TTATGTAAGTTATGTATTATGTAAG
** * **
15088720 TTTTATGTAAAATATGTAAGT-TGTATT
1 --TTATGTAAGTTATGT-ATTATGTAAG
* * *
15088747 TTATGAAAGTTATATAAGTTATGTAGG
1 TTATGTAAGTTATGT-A-TTATGTAAG
* * *
15088774 CTATGT-A-TTATGCAAGTTATTTAAG
1 TTATGTAAGTTATG-TA-TTATGTAAG
*
15088799 TTGTGTAAGTGT-TGTATTATGTAAG
1 TTATGTAAGT-TATGTATTATGTAAG
* * * *
15088824 ATATGTAAGTTGTATTTTATGTAAG
1 TTATGTAAGTTATGTATTATGTAAG
* *
15088849 TTCTGT-A-CTATGTATGTTATGTAAG
1 TTATGTAAGTTATGTA--TTATGTAAG
* * *
15088874 TTGTGT-AG-AATGTAAGCTATGTAAG
1 TTATGTAAGTTATGT-A-TTATGTAAG
**
15088899 TTATGTAAGTGGTGTATTATGTAAG
1 TTATGTAAGTTATGTATTATGTAAG
*
15088924 TTATGTAAGTTATGTA--A-GTTA-
1 TTATGTAAGTTATGTATTATGTAAG
15088945 TTATGTAAGTTATG
1 TTATGTAAGTTATG
15088959 CAAGCTTATA
Statistics
Matches: 180, Mismatches: 43, Indels: 34
0.70 0.17 0.13
Matches are distributed among these distances:
21 14 0.08
22 3 0.02
23 4 0.02
24 2 0.01
25 116 0.64
26 8 0.04
27 30 0.17
28 3 0.02
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.46
Consensus pattern (25 bp):
TTATGTAAGTTATGTATTATGTAAG
Found at i:15088950 original size:12 final size:12
Alignment explanation
Indices: 15088933--15089061 Score: 60
Period size: 12 Copynumber: 12.1 Consensus size: 12
15088923 GTTATGTAAG
15088933 TTATGTAAGTTA
1 TTATGTAAGTTA
15088945 TTATGTAAG---
1 TTATGTAAGTTA
*
15088954 TTATGCAAGCTTA
1 TTATGTAAG-TTA
*
15088967 -TATATAAGTTA
1 TTATGTAAGTTA
*
15088978 TGTAT-TATGTTA
1 T-TATGTAAGTTA
15088990 TTA--T--G-TA
1 TTATGTAAGTTA
*
15088997 TTATGTAATTTA
1 TTATGTAAGTTA
*
15089009 TTATGTTA-TTA
1 TTATGTAAGTTA
*
15089020 -TATATAAG--A
1 TTATGTAAGTTA
15089029 -TATGTAAG---
1 TTATGTAAGTTA
15089037 TTATGTAAGTTA
1 TTATGTAAGTTA
15089049 TTATGTAAGTTA
1 TTATGTAAGTTA
15089061 T
1 T
15089062 GCAAGCTTAT
Statistics
Matches: 92, Mismatches: 9, Indels: 32
0.69 0.07 0.24
Matches are distributed among these distances:
7 5 0.05
8 1 0.01
9 25 0.27
10 6 0.07
11 8 0.09
12 44 0.48
13 3 0.03
ACGTcount: A:0.34, C:0.02, G:0.15, T:0.50
Consensus pattern (12 bp):
TTATGTAAGTTA
Found at i:15088993 original size:8 final size:7
Alignment explanation
Indices: 15088975--15089020 Score: 51
Period size: 7 Copynumber: 6.6 Consensus size: 7
15088965 TATATATAAG
15088975 TTATGTA
1 TTATGTA
15088982 TTATGTTA
1 TTATG-TA
15088990 TTATGTA
1 TTATGTA
15088997 TTATGTA
1 TTATGTA
*
15089004 --ATTTA
1 TTATGTA
15089009 TTATGTTA
1 TTATG-TA
15089017 TTAT
1 TTAT
15089021 ATATAAGATA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
5 4 0.12
7 16 0.48
8 13 0.39
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (7 bp):
TTATGTA
Found at i:15088995 original size:15 final size:15
Alignment explanation
Indices: 15088975--15089020 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
15088965 TATATATAAG
15088975 TTATGTATTATGTTA
1 TTATGTATTATGTTA
15088990 TTATGTATTATG-TA
1 TTATGTATTATGTTA
*
15089004 --ATTTATTATGTTA
1 TTATGTATTATGTTA
15089017 TTAT
1 TTAT
15089021 ATATAAGATA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 9 0.33
13 2 0.07
14 2 0.07
15 14 0.52
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (15 bp):
TTATGTATTATGTTA
Done.