Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 56 of 196
Found at i:15690611 original size:30 final size:30
Alignment explanation
Indices: 15690577--15690736 Score: 146
Period size: 30 Copynumber: 5.4 Consensus size: 30
15690567 GAAGCTATCT
15690577 CTTTTCATAATTTGATGGTCATCACCATCC
1 CTTTTCATAATTTGATGGTCATCACCATCC
** * * *
15690607 CTTTTCATTGTTCGACGGTCGTCACCATCC
1 CTTTTCATAATTTGATGGTCATCACCATCC
*** *
15690637 CTTTTCATAATTTGATAACCA-AAGCCATCC
1 CTTTTCATAATTTGATGGTCATCA-CCATCC
* * * *
15690667 CTTTTCATAGTTCGATGATCGTCACCATCC
1 CTTTTCATAATTTGATGGTCATCACCATCC
* *
15690697 ATTTCCATAA-TTGATGGTCATCACCA-CTC
1 CTTTTCATAATTTGATGGTCATCACCATC-C
15690726 CTTTTCATAAT
1 CTTTTCATAAT
15690737 CGATAGCCAA
Statistics
Matches: 98, Mismatches: 28, Indels: 8
0.73 0.21 0.06
Matches are distributed among these distances:
28 1 0.01
29 23 0.23
30 73 0.74
31 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.11, T:0.38
Consensus pattern (30 bp):
CTTTTCATAATTTGATGGTCATCACCATCC
Found at i:15690637 original size:90 final size:89
Alignment explanation
Indices: 15690543--15690736 Score: 237
Period size: 90 Copynumber: 2.2 Consensus size: 89
15690533 AGTGGAGGCT
* * * * * *
15690543 ATCCCTTTTCATAATTTAATAACCGAAGCTATCTCTTTTCATAATTTGATGGTCATCACCATCCC
1 ATCCCTTTTCATAATTTAATAACCAAAGCCATCCCTTTTCATAATTCGATGATCATCACCATCCA
* ** *
15690608 TTTTCATTGTTCGACGGTCGTCACC
66 TTTCCATAATT-GACGGTCATCACC
* * *
15690633 ATCCCTTTTCATAATTTGATAACCAAAGCCATCCCTTTTCATAGTTCGATGATCGTCACCATCCA
1 ATCCCTTTTCATAATTTAATAACCAAAGCCATCCCTTTTCATAATTCGATGATCATCACCATCCA
*
15690698 TTTCCATAATTGATGGTCATCACC
66 TTTCCATAATTGACGGTCATCACC
15690722 A-CTCCTTTTCATAAT
1 ATC-CCTTTTCATAAT
15690737 CGATAGCCAA
Statistics
Matches: 89, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
88 1 0.01
89 24 0.27
90 64 0.72
ACGTcount: A:0.25, C:0.27, G:0.10, T:0.38
Consensus pattern (89 bp):
ATCCCTTTTCATAATTTAATAACCAAAGCCATCCCTTTTCATAATTCGATGATCATCACCATCCA
TTTCCATAATTGACGGTCATCACC
Found at i:15690641 original size:60 final size:60
Alignment explanation
Indices: 15690577--15690734 Score: 196
Period size: 60 Copynumber: 2.6 Consensus size: 60
15690567 GAAGCTATCT
* *
15690577 CTTTTCATAATTTGATGGTCATCACCATCCCTTTTCATTGTTCGACGGTCGTCACCATCC
1 CTTTTCATAATTTGATGGTCATCACCATCCCTTTTCATAGTTCGACGATCGTCACCATCC
*** * *
15690637 CTTTTCATAATTTGATAACCA-AAGCCATCCCTTTTCATAGTTCGATGATCGTCACCATCC
1 CTTTTCATAATTTGATGGTCATCA-CCATCCCTTTTCATAGTTCGACGATCGTCACCATCC
* *
15690697 ATTTCCATAA-TTGATGGTCATCACCA-CTCCTTTTCATA
1 CTTTTCATAATTTGATGGTCATCACCATC-CCTTTTCATA
15690735 ATCGATAGCC
Statistics
Matches: 82, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
58 1 0.01
59 21 0.26
60 60 0.73
ACGTcount: A:0.23, C:0.28, G:0.11, T:0.37
Consensus pattern (60 bp):
CTTTTCATAATTTGATGGTCATCACCATCCCTTTTCATAGTTCGACGATCGTCACCATCC
Found at i:15690759 original size:29 final size:29
Alignment explanation
Indices: 15690727--15690783 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
15690717 TCACCACTCC
15690727 TTTTCATAATCGATAGCCAAAGCTATCCT
1 TTTTCATAATCGATAGCCAAAGCTATCCT
* * * *
15690756 TTTTCGTAGTCGATAGTCGAAGCTATCC
1 TTTTCATAATCGATAGCCAAAGCTATCC
15690784 CATTTCACCC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (29 bp):
TTTTCATAATCGATAGCCAAAGCTATCCT
Found at i:15691964 original size:19 final size:20
Alignment explanation
Indices: 15691920--15691967 Score: 80
Period size: 21 Copynumber: 2.4 Consensus size: 20
15691910 GGCTGTTACA
15691920 TTTGTGAACTTGATCAAACTC
1 TTTGTGAACTTGATCAAAC-C
15691941 TTTGTGAACTTGATCAAA-C
1 TTTGTGAACTTGATCAAACC
15691960 TTTGTGAA
1 TTTGTGAA
15691968 GATTCAACAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 9 0.33
21 18 0.67
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.40
Consensus pattern (20 bp):
TTTGTGAACTTGATCAAACC
Found at i:15692998 original size:20 final size:20
Alignment explanation
Indices: 15692973--15693013 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
15692963 CAATTCAGGT
*
15692973 AAAGGAATTGAAGAAAGAAG
1 AAAGGAATGGAAGAAAGAAG
15692993 AAAGGAATGGAAGAAAGAAG
1 AAAGGAATGGAAGAAAGAAG
15693013 A
1 A
15693014 TTTTGGGTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.32, T:0.07
Consensus pattern (20 bp):
AAAGGAATGGAAGAAAGAAG
Found at i:15696223 original size:31 final size:30
Alignment explanation
Indices: 15696152--15696210 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
15696142 GAATTTGATT
* *
15696152 AAATCAAAATTTCATATATAAATTTGCACA
1 AAATCAAAGTTTCATATATAAAGTTGCACA
15696182 AAATCAAAGTTT-ATATATAAAGTTGCACA
1 AAATCAAAGTTTCATATATAAAGTTGCACA
15696211 TTGAATCAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 16 0.59
30 11 0.41
ACGTcount: A:0.49, C:0.12, G:0.07, T:0.32
Consensus pattern (30 bp):
AAATCAAAGTTTCATATATAAAGTTGCACA
Found at i:15697898 original size:6 final size:6
Alignment explanation
Indices: 15697889--15697913 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
15697879 TTTAATTTGC
15697889 TTGAAT TTGAAT TTGAAT TTGAAT T
1 TTGAAT TTGAAT TTGAAT TTGAAT T
15697914 GATGGAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (6 bp):
TTGAAT
Found at i:15705036 original size:7 final size:7
Alignment explanation
Indices: 15705024--15705055 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
15705014 GTCCTTAAAC
15705024 ATTTTAA
1 ATTTTAA
15705031 ATTTTAA
1 ATTTTAA
15705038 ATTTTAA
1 ATTTTAA
15705045 ATTTTAA
1 ATTTTAA
15705052 ATTT
1 ATTT
15705056 CAACCCTCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
ATTTTAA
Found at i:15710112 original size:114 final size:114
Alignment explanation
Indices: 15709807--15710115 Score: 286
Period size: 114 Copynumber: 2.7 Consensus size: 114
15709797 TGGTCATAAA
* * * * * *
15709807 CGCCGCAAAAACTATTAAGAAAAAC-ACTGCCGTTTTCAGTTTAGGTTTTGGGGACTTTAGTGGC
1 CGCCGC-AAAACTGTTAAG-AAAACGA-TGTCATTTTCAATTTAGGTTTTAGAGACTTTAGTGGC
*
15709871 GCTTAAT-GAAAAACGCCGCTATAGTCAAGAATTAGCGGCGCTTTATCATAAG
63 GCTT-ATCGAAAAACGCCGCTATAGTCAAGAATTAGCGGCGCTTTATCAGAAG
* * * * * * ** * * *
15709923 CGTCGTAAGACTGTTAAGAAAATGTTGTCGTTTTTC-ATTTATCTTTTCGAGACGTTAGTGGCGA
1 CGCCGCAAAACTGTTAAGAAAACGATGTC-ATTTTCAATTTAGGTTTTAGAGACTTTAGTGGCGC
* * ** *
15709987 TTTTCGGAAAACGCCG-TAGTAG-CGAAGCTTTAGTGGCGCTTTATCAGAAG
65 TTATCGAAAAACGCCGCTA-TAGTC-AAGAATTAGCGGCGCTTTATCAGAAG
*
15710037 TGCCGCAAAACTGTTAAGAAAACGATGTCATTTTCAATTTAGGTTTTAGAGACTTTAGTGGCGCT
1 CGCCGCAAAACTGTTAAGAAAACGATGTCATTTTCAATTTAGGTTTTAGAGACTTTAGTGGCGCT
* *
15710102 TGTCTAAAAACGCC
66 TATCGAAAAACGCC
15710116 ACCAAATATA
Statistics
Matches: 151, Mismatches: 36, Indels: 14
0.75 0.18 0.07
Matches are distributed among these distances:
113 9 0.06
114 123 0.81
115 15 0.10
116 4 0.03
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.31
Consensus pattern (114 bp):
CGCCGCAAAACTGTTAAGAAAACGATGTCATTTTCAATTTAGGTTTTAGAGACTTTAGTGGCGCT
TATCGAAAAACGCCGCTATAGTCAAGAATTAGCGGCGCTTTATCAGAAG
Found at i:15710808 original size:15 final size:15
Alignment explanation
Indices: 15710788--15710820 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
15710778 TTTAAGGATT
*
15710788 GGGGTTAAGGGTTTA
1 GGGGTTAAGGGTTAA
15710803 GGGGTTAAGGGTTAA
1 GGGGTTAAGGGTTAA
15710818 GGG
1 GGG
15710821 CTGGGGTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.00, G:0.52, T:0.27
Consensus pattern (15 bp):
GGGGTTAAGGGTTAA
Found at i:15712345 original size:20 final size:19
Alignment explanation
Indices: 15712322--15712386 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 19
15712312 AAGCTCAAAC
15712322 GAGCTAAAGTAAGCTAAATT
1 GAGCTAAAGT-AGCTAAATT
15712342 GAGCTCAAACG-AGCTAAATT
1 GAGCT-AAA-GTAGCTAAATT
* * * *
15712362 AAGCTCATGTGAGCTAAATC
1 GAGCTAAAGT-AGCTAAATT
15712382 GAGCT
1 GAGCT
15712387 GGGAAAAACT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 30 0.83
21 3 0.08
22 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (19 bp):
GAGCTAAAGTAGCTAAATT
Found at i:15712666 original size:21 final size:22
Alignment explanation
Indices: 15712642--15712697 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
15712632 TATGGATTAT
*
15712642 GGTTTAAGGG-TTGGGGTTAAG
1 GGTTTAAGGGTTTAGGGTTAAG
*
15712663 GGTTTATGGGTTTAGGGTT-AG
1 GGTTTAAGGGTTTAGGGTTAAG
* *
15712684 GGGTTAGGGGTTTA
1 GGTTTAAGGGTTTA
15712698 TAGTTAATGT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 23 0.77
22 7 0.23
ACGTcount: A:0.16, C:0.00, G:0.46, T:0.38
Consensus pattern (22 bp):
GGTTTAAGGGTTTAGGGTTAAG
Found at i:15712674 original size:29 final size:28
Alignment explanation
Indices: 15712638--15712698 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 28
15712628 GGCTTATGGA
15712638 TTATGGTTTAAGGGTT-GGGGTTAAGGGT
1 TTATGGTTT-AGGGTTAGGGGTTAAGGGT
*
15712666 TTATGGGTTTAGGGTTAGGGGTTAGGGGT
1 TTAT-GGTTTAGGGTTAGGGGTTAAGGGT
15712695 TTAT
1 TTAT
15712699 AGTTAATGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
28 10 0.33
29 20 0.67
ACGTcount: A:0.16, C:0.00, G:0.43, T:0.41
Consensus pattern (28 bp):
TTATGGTTTAGGGTTAGGGGTTAAGGGT
Found at i:15715098 original size:15 final size:15
Alignment explanation
Indices: 15715078--15715106 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
15715068 CTGTGCTTCC
15715078 TGTGCTTCCTGTAAT
1 TGTGCTTCCTGTAAT
15715093 TGTGCTTCCTGTAA
1 TGTGCTTCCTGTAA
15715107 CTGTTACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.21, T:0.45
Consensus pattern (15 bp):
TGTGCTTCCTGTAAT
Found at i:15716203 original size:17 final size:17
Alignment explanation
Indices: 15716183--15716232 Score: 72
Period size: 17 Copynumber: 3.2 Consensus size: 17
15716173 TTACTATCTA
15716183 TATAAGTTTTCTAAATT
1 TATAAGTTTTCTAAATT
15716200 TATAAGTTTTCT-AA--
1 TATAAGTTTTCTAAATT
15716214 -ATAAGTTTTCTAAATT
1 TATAAGTTTTCTAAATT
15716230 TAT
1 TAT
15716233 TTGTATTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.38
14 2 0.07
16 2 0.07
17 14 0.48
ACGTcount: A:0.36, C:0.06, G:0.06, T:0.52
Consensus pattern (17 bp):
TATAAGTTTTCTAAATT
Found at i:15716219 original size:13 final size:13
Alignment explanation
Indices: 15716201--15716228 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
15716191 TTCTAAATTT
15716201 ATAAGTTTTCTAA
1 ATAAGTTTTCTAA
15716214 ATAAGTTTTCTAA
1 ATAAGTTTTCTAA
15716227 AT
1 AT
15716229 TTATTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.46
Consensus pattern (13 bp):
ATAAGTTTTCTAA
Found at i:15716259 original size:15 final size:15
Alignment explanation
Indices: 15716224--15716262 Score: 60
Period size: 16 Copynumber: 2.5 Consensus size: 15
15716214 ATAAGTTTTC
*
15716224 TAAATTTATTTGTAT
1 TAAATTTATTAGTAT
15716239 TAAAATTTATTAGTAT
1 T-AAATTTATTAGTAT
15716255 TAAATTTA
1 TAAATTTA
15716263 CTTCGTTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 8 0.36
16 14 0.64
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (15 bp):
TAAATTTATTAGTAT
Found at i:15716305 original size:62 final size:61
Alignment explanation
Indices: 15716194--15716342 Score: 174
Period size: 62 Copynumber: 2.4 Consensus size: 61
15716184 ATAAGTTTTC
* *** * *
15716194 TAAATTTATAAGTTTTCTAAATAAGTTTTCTAAATTTATTTGTATTAAAATTTAT-TAGTAT
1 TAAATTTATAAGTTTTCTAAATAAGTGTTCTAAATTTAGGAGAAATAAAATTTATGT-GTAT
** *
15716255 TAAATTTACTTCGTTTTCTAAATAAGTGTTCTAAATTTGGGAGAAATAAAATTTATGTGTAT
1 TAAATTTA-TAAGTTTTCTAAATAAGTGTTCTAAATTTAGGAGAAATAAAATTTATGTGTAT
* *
15716317 TAATTTTATAAGTTTTCTACATAAGT
1 TAAATTTATAAGTTTTCTAAATAAGT
15716343 TACATAATAC
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
61 23 0.32
62 49 0.67
63 1 0.01
ACGTcount: A:0.36, C:0.05, G:0.10, T:0.48
Consensus pattern (61 bp):
TAAATTTATAAGTTTTCTAAATAAGTGTTCTAAATTTAGGAGAAATAAAATTTATGTGTAT
Found at i:15716381 original size:16 final size:16
Alignment explanation
Indices: 15716362--15716397 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
15716352 CACCACTTAC
*
15716362 ATATCTTACAAAACTT
1 ATATCATACAAAACTT
*
15716378 ATATCATACATAACTT
1 ATATCATACAAAACTT
15716394 ATAT
1 ATAT
15716398 TTAAGTTTGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.44, C:0.17, G:0.00, T:0.39
Consensus pattern (16 bp):
ATATCATACAAAACTT
Found at i:15716412 original size:21 final size:21
Alignment explanation
Indices: 15716384--15716444 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
15716374 ACTTATATCA
*
15716384 TACATAACTTATAT-TTAAGTT
1 TACATAACTTATATAATAA-TT
* *
15716405 TGCATAACTTACATAATAATT
1 TACATAACTTATATAATAATT
15716426 TACATAACTTATAT-ATAAT
1 TACATAACTTATATAATAAT
15716445 AACATAATAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
20 5 0.15
21 26 0.76
22 3 0.09
ACGTcount: A:0.43, C:0.11, G:0.03, T:0.43
Consensus pattern (21 bp):
TACATAACTTATATAATAATT
Found at i:15716507 original size:21 final size:21
Alignment explanation
Indices: 15716481--15716559 Score: 97
Period size: 21 Copynumber: 3.8 Consensus size: 21
15716471 TGTTATAATA
*
15716481 CATAACTTGTATATAAGCTTG
1 CATAACTTATATATAAGCTTG
*
15716502 CATAACTTATATTTAAGCTTG
1 CATAACTTATATATAAGCTTG
* * *
15716523 CATAACTTACATAATAA-TTTA
1 CATAACTTATAT-ATAAGCTTG
15716544 CATAACTTATATATAA
1 CATAACTTATATATAA
15716560 TAACATAATA
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
20 4 0.08
21 43 0.86
22 3 0.06
ACGTcount: A:0.41, C:0.14, G:0.06, T:0.39
Consensus pattern (21 bp):
CATAACTTATATATAAGCTTG
Found at i:15716510 original size:116 final size:116
Alignment explanation
Indices: 15716386--15716626 Score: 464
Period size: 116 Copynumber: 2.1 Consensus size: 116
15716376 TTATATCATA
*
15716386 CATAACTTATATTTAAGTTTGCATAACTTACATAATAATTTACATAACTTATATATAATAACATA
1 CATAACTTATATTTAAGCTTGCATAACTTACATAATAATTTACATAACTTATATATAATAACATA
15716451 ATAAATTACATAATACTTTATGTTATAATACATAACTTGTATATAAGCTTG
66 ATAAATTACATAATACTTTATGTTATAATACATAACTTGTATATAAGCTTG
15716502 CATAACTTATATTTAAGCTTGCATAACTTACATAATAATTTACATAACTTATATATAATAACATA
1 CATAACTTATATTTAAGCTTGCATAACTTACATAATAATTTACATAACTTATATATAATAACATA
15716567 ATAAATTACATAATACTTTATGTTATAATACATAACTTGTATATAAGCTTG
66 ATAAATTACATAATACTTTATGTTATAATACATAACTTGTATATAAGCTTG
*
15716618 CTTAACTTA
1 CATAACTTA
15716627 CATAAATTAA
Statistics
Matches: 123, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
116 123 1.00
ACGTcount: A:0.43, C:0.12, G:0.05, T:0.40
Consensus pattern (116 bp):
CATAACTTATATTTAAGCTTGCATAACTTACATAATAATTTACATAACTTATATATAATAACATA
ATAAATTACATAATACTTTATGTTATAATACATAACTTGTATATAAGCTTG
Found at i:15716649 original size:9 final size:9
Alignment explanation
Indices: 15716620--15716657 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
15716610 TAAGCTTGCT
15716620 TAACTTACA
1 TAACTTACA
* *
15716629 TAAATTAAA
1 TAACTTACA
15716638 TAACTTACA
1 TAACTTACA
15716647 TAACTTACA
1 TAACTTACA
15716656 TA
1 TA
15716658 TAATAACATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.50, C:0.16, G:0.00, T:0.34
Consensus pattern (9 bp):
TAACTTACA
Found at i:15716659 original size:101 final size:95
Alignment explanation
Indices: 15716502--15716688 Score: 284
Period size: 101 Copynumber: 1.9 Consensus size: 95
15716492 TATAAGCTTG
* *
15716502 CATAACTTATATTTAAGCTTGCATAACTTACATAATAATTTACATAACTTATATATAATAACATA
1 CATAACTTATATATAAGCTTGCATAACTTACATAATAATTTACATAACTTACATATAATAACATA
15716567 ATAAATTACATAATACTTTATGTTATAATA
66 ATAAATTACATAATACTTTATGTTATAATA
* *
15716597 CATAACTTGTATATAAGCTTGCTTAACTTACATAAATTAAATAACTTACATAACTTACATATAAT
1 CATAACTTATATATAAGCTTGCATAACTTACAT-AA-T-AAT---TTACATAACTTACATATAAT
15716662 AACATAATAAATTACATAATACTTTAT
60 AACATAATAAATTACATAATACTTTAT
15716689 ATAATGACAT
Statistics
Matches: 82, Mismatches: 4, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
95 30 0.37
96 2 0.02
97 1 0.01
98 3 0.04
101 46 0.56
ACGTcount: A:0.45, C:0.13, G:0.03, T:0.39
Consensus pattern (95 bp):
CATAACTTATATATAAGCTTGCATAACTTACATAATAATTTACATAACTTACATATAATAACATA
ATAAATTACATAATACTTTATGTTATAATA
Found at i:15716676 original size:22 final size:23
Alignment explanation
Indices: 15716636--15716679 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
15716626 ACATAAATTA
* *
15716636 AATAACTTACATAACTTACATAT
1 AATAACATACATAAATTACATAT
15716659 AATAACATA-ATAAATTACATA
1 AATAACATACATAAATTACATA
15716680 ATACTTTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.32
Consensus pattern (23 bp):
AATAACATACATAAATTACATAT
Found at i:15716691 original size:32 final size:29
Alignment explanation
Indices: 15716636--15716732 Score: 95
Period size: 32 Copynumber: 3.2 Consensus size: 29
15716626 ACATAAATTA
* *
15716636 AATAACTTACATAACTTACATATAATAACAT
1 AATAAATTAAATAACTTA--TATAATAACAT
* *
15716667 AATAAATTACATAATACTTTATATAATGACAT
1 AATAAATTAAAT-A-AC-TTATATAATAACAT
**
15716699 AATACCTTAAATAACTTATATAATAACAT
1 AATAAATTAAATAACTTATATAATAACAT
15716728 AATAA
1 AATAA
15716733 CATAATAACT
Statistics
Matches: 56, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
29 17 0.30
30 2 0.04
31 12 0.21
32 20 0.36
33 2 0.04
34 3 0.05
ACGTcount: A:0.53, C:0.12, G:0.01, T:0.34
Consensus pattern (29 bp):
AATAAATTAAATAACTTATATAATAACAT
Found at i:15716733 original size:20 final size:20
Alignment explanation
Indices: 15716636--15716733 Score: 74
Period size: 20 Copynumber: 4.7 Consensus size: 20
15716626 ACATAAATTA
15716636 AATAACTTACATAACTTACATAT
1 AATAACTTA-ATAACTTAC--AT
* *
15716659 AATAACATAATAAATTACAT
1 AATAACTTAATAACTTACAT
*
15716679 AAT-ACTTTATATAA-TGACAT
1 AATAAC-TTA-ATAACTTACAT
* *
15716699 AATACCTTAAATAACTTATAT
1 AATAACTT-AATAACTTACAT
*
15716720 AATAACATAATAAC
1 AATAACTTAATAAC
15716734 ATAATAACTA
Statistics
Matches: 61, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
19 2 0.03
20 27 0.44
21 16 0.26
22 8 0.13
23 8 0.13
ACGTcount: A:0.52, C:0.13, G:0.01, T:0.34
Consensus pattern (20 bp):
AATAACTTAATAACTTACAT
Found at i:15716798 original size:9 final size:9
Alignment explanation
Indices: 15716770--15717030 Score: 263
Period size: 9 Copynumber: 28.8 Consensus size: 9
15716760 CATATATAGA
15716770 AACTTACAT
1 AACTTACAT
* * *
15716779 AAATAAAAT
1 AACTTACAT
15716788 AACTTACAT
1 AACTTACAT
* *
15716797 AAATTAAAT
1 AACTTACAT
15716806 AACTTACAT
1 AACTTACAT
15716815 AACTTACAT
1 AACTTACAT
*
15716824 AAACTTGCAT
1 -AACTTACAT
* *
15716834 AAATTAAAT
1 AACTTACAT
15716843 AACTTACAT
1 AACTTACAT
* *
15716852 AAATTAAAT
1 AACTTACAT
15716861 AACTTACAT
1 AACTTACAT
* *
15716870 AAATTAAAT
1 AACTTACAT
15716879 AACTTACAT
1 AACTTACAT
15716888 AACTTACAT
1 AACTTACAT
*
15716897 AACCTACAT
1 AACTTACAT
* *
15716906 AAATTAAAT
1 AACTTACAT
15716915 AACTTACAT
1 AACTTACAT
15716924 AACTTACAT
1 AACTTACAT
* *
15716933 AAATTAAAT
1 AACTTACAT
15716942 AACTTACAT
1 AACTTACAT
15716951 AACTTACAT
1 AACTTACAT
* * *
15716960 AAATTTCGT
1 AACTTACAT
*
15716969 GGACTTACAT
1 -AACTTACAT
*
15716979 AACCTACAT
1 AACTTACAT
* *
15716988 AAATTAAAT
1 AACTTACAT
15716997 AACTTACAT
1 AACTTACAT
15717006 AACTTACAT
1 AACTTACAT
*
15717015 AAATTGA-AT
1 AACTT-ACAT
15717024 AACTTAC
1 AACTTAC
15717031 CCGTGCAAAT
Statistics
Matches: 198, Mismatches: 50, Indels: 8
0.77 0.20 0.03
Matches are distributed among these distances:
8 1 0.01
9 183 0.92
10 14 0.07
ACGTcount: A:0.50, C:0.16, G:0.02, T:0.32
Consensus pattern (9 bp):
AACTTACAT
Found at i:15716816 original size:27 final size:27
Alignment explanation
Indices: 15716786--15717030 Score: 337
Period size: 27 Copynumber: 9.0 Consensus size: 27
15716776 CATAAATAAA
15716786 ATAACTTACATAAATTAAATAACTTAC
1 ATAACTTACATAAATTAAATAACTTAC
** * *
15716813 ATAACTTACATAAACTTGCATAAATTAA
1 ATAACTTACATAAA-TTAAATAACTTAC
15716841 ATAACTTACATAAATTAAATAACTTAC
1 ATAACTTACATAAATTAAATAACTTAC
* * * *
15716868 ATAAATTAAATAACTTACATAACTTAC
1 ATAACTTACATAAATTAAATAACTTAC
*
15716895 ATAACCTACATAAATTAAATAACTTAC
1 ATAACTTACATAAATTAAATAACTTAC
15716922 ATAACTTACATAAATTAAATAACTTAC
1 ATAACTTACATAAATTAAATAACTTAC
*** *
15716949 ATAACTTACATAAATTTCGTGGACTTAC
1 ATAACTTACATAAATTAAAT-AACTTAC
*
15716977 ATAACCTACATAAATTAAATAACTTAC
1 ATAACTTACATAAATTAAATAACTTAC
*
15717004 ATAACTTACATAAATTGAATAACTTAC
1 ATAACTTACATAAATTAAATAACTTAC
15717031 CCGTGCAAAT
Statistics
Matches: 187, Mismatches: 29, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
27 142 0.76
28 45 0.24
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (27 bp):
ATAACTTACATAAATTAAATAACTTAC
Found at i:15722494 original size:21 final size:21
Alignment explanation
Indices: 15722468--15722518 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
15722458 CTACAACTTA
*
15722468 AAGCAGATGCGGCAGCGAGAG
1 AAGCAGAGGCGGCAGCGAGAG
*
15722489 AAGCAGAGGCTGCAGCGAGAG
1 AAGCAGAGGCGGCAGCGAGAG
15722510 AAGCAGAGG
1 AAGCAGAGG
15722519 TTCAAAAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.35, C:0.18, G:0.43, T:0.04
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGCGAGAG
Found at i:15722958 original size:42 final size:42
Alignment explanation
Indices: 15722898--15723001 Score: 172
Period size: 42 Copynumber: 2.5 Consensus size: 42
15722888 CGTTTTTGTA
15722898 AAAAAGCGCCGCTAAAGAACATGATCTTTAGCAGCGCTTAAGG
1 AAAAA-CGCCGCTAAAGAACATGATCTTTAGCAGCGCTTAAGG
* *
15722941 AAAAATGCCGCTAAAGAACATGATCTTTAGCGGCGCTTAAGG
1 AAAAACGCCGCTAAAGAACATGATCTTTAGCAGCGCTTAAGG
*
15722983 AAAAACGCAGCTAAAGAAC
1 AAAAACGCCGCTAAAGAAC
15723002 GAAAAACGCC
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
42 52 0.91
43 5 0.09
ACGTcount: A:0.40, C:0.20, G:0.22, T:0.17
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGAACATGATCTTTAGCAGCGCTTAAGG
Found at i:15727496 original size:24 final size:23
Alignment explanation
Indices: 15727466--15727520 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
15727456 AATAGAGACA
* *
15727466 AAGATGAAGCCAAAGGTGGAGATG
1 AAGATGAAACC-AAGGTGGAAATG
*
15727490 AATATGAAAACCAAGGTGGAAATG
1 AAGATG-AAACCAAGGTGGAAATG
15727514 AAGATGA
1 AAGATGA
15727521 GTACGAGGGT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 1 0.04
24 21 0.81
25 4 0.15
ACGTcount: A:0.47, C:0.07, G:0.31, T:0.15
Consensus pattern (23 bp):
AAGATGAAACCAAGGTGGAAATG
Found at i:15728608 original size:281 final size:281
Alignment explanation
Indices: 15728090--15728646 Score: 688
Period size: 281 Copynumber: 2.0 Consensus size: 281
15728080 ATGCCTTAAT
* * * ** * *
15728090 GTATTCCTTAATACGGAACATGTTGCCTTTGTATGCCCTGGGTTTCTACAGTACCCGCATAACCT
1 GTATCCCTCAATACAGAACATGTTGCCTTCATATGCCCTAGGTTTCTACAGTACCCACATAACCT
* * * *
15728155 CTGTTGATTGCCTCTCTCCTGAATATCAATATTAGTACTTATCCGAGTAAAATTCGGATGACCTT
66 CTGTTGATTGCCTCTCTCCTGAACATCAATATTAGTACGTATCCGAGTAAAATTCAGACGACCTT
* * * ** * * * * * * *
15728220 TTGGGATGCAACACAAGTTCATGTTCGGGTCCAACTCGAACAGAGCTCTGGGCACTGGCAAACAC
131 TCGAGATACAACACAAGTAAATATTCGGGGCCAAATCAAACAGAGCACTAGACACTGGCAAACAC
* *
15728285 ATACTCTCATCTGAGATAGGTGGGAATTTAGATATTCATACATTGTGCATGCC-TTCTAATTTGT
196 ATACTCTCATCTGAGATAGGTGAGAATTTAGATATCCATACATTGTGCATGCCTTTC-AATTTGT
15728349 ACACATCGTTAATATAATATGG
260 ACACATCGTTAATATAATATGG
*
15728371 GTATCCCTCAATACAGAACATGTTGCCTTCATATGCTCTAGGTTTCTACAGTACCCACATAACCT
1 GTATCCCTCAATACAGAACATGTTGCCTTCATATGCCCTAGGTTTCTACAGTACCCACATAACCT
* * * * * * *
15728436 CTGTTGATTGTCTCTCTCTTGAACATCCATATTGGTGA-GTATCCGAGTGAAATTTAGACGACGT
66 CTGTTGATTGCCTCTCTCCTGAACATCAATATTAGT-ACGTATCCGAGTAAAATTCAGACGACCT
* ** * **
15728500 TTCGAGATACGATGCAAGTAAATATTCGGGGCCAAATCAAAC-GGGACACTAGACACTGGCAGCC
130 TTCGAGATACAACACAAGTAAATATTCGGGGCCAAATCAAACAGAG-CACTAGACACTGGCAAAC
* * *
15728564 ACATACTCTTATCTGGGATAGGTGAGAATTTAGATATCCATACATTGTGCATGCCTTTCAGTTTG
194 ACATACTCTCATCTGAGATAGGTGAGAATTTAGATATCCATACATTGTGCATGCCTTTCAATTTG
15728629 TACACATCGTTAATATAA
259 TACACATCGTTAATATAA
15728647 GGTGTGTACT
Statistics
Matches: 231, Mismatches: 42, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
280 2 0.01
281 225 0.97
282 4 0.02
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (281 bp):
GTATCCCTCAATACAGAACATGTTGCCTTCATATGCCCTAGGTTTCTACAGTACCCACATAACCT
CTGTTGATTGCCTCTCTCCTGAACATCAATATTAGTACGTATCCGAGTAAAATTCAGACGACCTT
TCGAGATACAACACAAGTAAATATTCGGGGCCAAATCAAACAGAGCACTAGACACTGGCAAACAC
ATACTCTCATCTGAGATAGGTGAGAATTTAGATATCCATACATTGTGCATGCCTTTCAATTTGTA
CACATCGTTAATATAATATGG
Found at i:15729010 original size:26 final size:26
Alignment explanation
Indices: 15728975--15729026 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15728965 GAAAAGTATG
*
15728975 CTTCTTTGACAATCGAGGTTATTGGT
1 CTTCTTTGACAACCGAGGTTATTGGT
*
15729001 CTTCTTTGACAACCTAGGTTATTGGT
1 CTTCTTTGACAACCGAGGTTATTGGT
15729027 AAATGACGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.19, C:0.17, G:0.21, T:0.42
Consensus pattern (26 bp):
CTTCTTTGACAACCGAGGTTATTGGT
Found at i:15731903 original size:95 final size:95
Alignment explanation
Indices: 15731729--15731903 Score: 235
Period size: 95 Copynumber: 1.8 Consensus size: 95
15731719 TTATTTATTC
* * *
15731729 GAGTTAGCTGAGTTAAGCTCGCAACTCTGAGACAGCTCACTGACCTACACTCCCAGCTGATAAAC
1 GAGTTAGCTGAGTTAAACTCACAACTCTGAGACAGCTCACGGACCTACACTCCCAGCTGATAAAC
*
15731794 TCCAACATAACTCGCAACTAGGATATAGAT
66 TCCAACACAACTCGCAACTAGGATATAGAT
* * * ** *
15731824 GAGTTAGTTGAGTTAAACTCACAACTAC-GAGATAGCTCGCGGACCTACGTTCCTAGCTGATAAA
1 GAGTTAGCTGAGTTAAACTCACAACT-CTGAGACAGCTCACGGACCTACACTCCCAGCTGATAAA
*
15731888 CTCCAACACAGCTCGC
65 CTCCAACACAACTCGC
15731904 GGACCTACTT
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
95 67 0.99
96 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.22
Consensus pattern (95 bp):
GAGTTAGCTGAGTTAAACTCACAACTCTGAGACAGCTCACGGACCTACACTCCCAGCTGATAAAC
TCCAACACAACTCGCAACTAGGATATAGAT
Found at i:15732202 original size:102 final size:102
Alignment explanation
Indices: 15731993--15732262 Score: 274
Period size: 102 Copynumber: 2.6 Consensus size: 102
15731983 TAGTTGATTT
** * *
15731993 TTAAAGGTTAGCTGAGTTAAGCTCTCAACCTATTTTTTTTGAGGTAGTTGAGTCAAGCTCGCAAC
1 TTAAAGGTTAGCTGAGTTAAGCTCT-AACCTAAATTTTTTGAGTTAGTTGAGTTAAGCTCGCAAC
* * * *
15732058 TCCGAAACAGCTCGCGGACCTACGTTCTCAACTAATGT
65 TCCGAAACAACTCGCGAACCTACGTTCCCAACTAATGC
* * *
15732096 TTAAA-GTTCAGCTAAGTTAAACTCGTAACCTAAATTTTTT-AGTTAGTTGAGTTAAGCTTGCAA
1 TTAAAGGTT-AGCTGAGTTAAGCTC-TAACCTAAATTTTTTGAGTTAGTTGAGTTAAGCTCGCAA
* * * *** *
15732159 CTCTGAAACAACTTGCGAACCTATGTTCCCTGGTTATGC
64 CTCCGAAACAACTCGCGAACCTACGTTCCCAACTAATGC
* * * ** *
15732198 TTAAAGGTTAGTTGAGTTAAGCTTATAACTTAAATTTTTTGAGTTAACTGAGTTAAGCTCACAAC
1 TTAAAGGTTAGCTGAGTTAAGC-TCTAACCTAAATTTTTTGAGTTAGTTGAGTTAAGCTCGCAAC
15732263 CCTAGCTATT
Statistics
Matches: 135, Mismatches: 27, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
102 80 0.59
103 54 0.40
104 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (102 bp):
TTAAAGGTTAGCTGAGTTAAGCTCTAACCTAAATTTTTTGAGTTAGTTGAGTTAAGCTCGCAACT
CCGAAACAACTCGCGAACCTACGTTCCCAACTAATGC
Found at i:15752073 original size:25 final size:25
Alignment explanation
Indices: 15752020--15752089 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 25
15752010 CATATGAGCA
* *
15752020 CATA-AACAGGAAGCTCTCTCTCAAGC
1 CATATAACAGGAAGCT-TATGT-AAGC
* *
15752046 CATATGACGGGAAGCTTATGTAAGC
1 CATATAACAGGAAGCTTATGTAAGC
*
15752071 CATGTAACAGGAAGCTTAT
1 CATATAACAGGAAGCTTAT
15752090 CCGGGCCATA
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
25 20 0.56
26 7 0.19
27 9 0.25
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.23
Consensus pattern (25 bp):
CATATAACAGGAAGCTTATGTAAGC
Found at i:15752754 original size:21 final size:21
Alignment explanation
Indices: 15752730--15752771 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
15752720 TAAATTTAAC
*
15752730 TCAATTTAATACAATTCACAT
1 TCAATTCAATACAATTCACAT
* *
15752751 TCAATTCCATTCAATTCACAT
1 TCAATTCAATACAATTCACAT
15752772 CTTAGGCAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (21 bp):
TCAATTCAATACAATTCACAT
Found at i:15752761 original size:10 final size:11
Alignment explanation
Indices: 15752741--15752771 Score: 55
Period size: 10 Copynumber: 2.9 Consensus size: 11
15752731 CAATTTAATA
15752741 CAATTCACATT
1 CAATTCACATT
15752752 CAATTC-CATT
1 CAATTCACATT
15752762 CAATTCACAT
1 CAATTCACAT
15752772 CTTAGGCAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.53
11 9 0.47
ACGTcount: A:0.35, C:0.29, G:0.00, T:0.35
Consensus pattern (11 bp):
CAATTCACATT
Found at i:15760544 original size:46 final size:46
Alignment explanation
Indices: 15760472--15760611 Score: 235
Period size: 46 Copynumber: 3.0 Consensus size: 46
15760462 ACAATGCTAT
* * **
15760472 AACTCAGTATGGTTTCCTTCACTGAAATTCCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCATTGAAACACCATACCTACTTTTCAC
*
15760518 AACTCTGTATGGTTTTCTTCATTGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCATTGAAACACCATACCTACTTTTCAC
15760564 AACTCAGTATGGTTTTCTTCATTGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCATTGAAACACCATACCTACTTTTCAC
15760610 AA
1 AA
15760612 TTTGTCATGG
Statistics
Matches: 88, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 88 1.00
ACGTcount: A:0.28, C:0.26, G:0.09, T:0.37
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTCATTGAAACACCATACCTACTTTTCAC
Found at i:15768744 original size:24 final size:24
Alignment explanation
Indices: 15768717--15768765 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
15768707 TGAACTTCGA
*
15768717 TTTATTCTGTTTTGATAGCTAACG
1 TTTATTATGTTTTGATAGCTAACG
15768741 TTTATTATGTTTTGATAGCTAACG
1 TTTATTATGTTTTGATAGCTAACG
15768765 T
1 T
15768766 GACAATGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.22, C:0.10, G:0.16, T:0.51
Consensus pattern (24 bp):
TTTATTATGTTTTGATAGCTAACG
Found at i:15768777 original size:23 final size:24
Alignment explanation
Indices: 15768724--15768779 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 24
15768714 CGATTTATTC
* **
15768724 TGTTTTGATAGCTAACGTTTATTA
1 TGTTTTGATAGCTAACGTTGACAA
15768748 TGTTTTGATAGCTAACG-TGACAA
1 TGTTTTGATAGCTAACGTTGACAA
15768771 TGTTTTGAT
1 TGTTTTGAT
15768780 CACTGGGCCA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 12 0.41
24 17 0.59
ACGTcount: A:0.25, C:0.09, G:0.20, T:0.46
Consensus pattern (24 bp):
TGTTTTGATAGCTAACGTTGACAA
Found at i:15774275 original size:12 final size:11
Alignment explanation
Indices: 15774262--15774301 Score: 55
Period size: 12 Copynumber: 3.6 Consensus size: 11
15774252 GAACAATGAG
15774262 AAGAAAAGAAA
1 AAGAAAAGAAA
*
15774273 GA-AAAAGAAA
1 AAGAAAAGAAA
15774283 AAGAAAAAGAAA
1 AAG-AAAAGAAA
15774295 AAGAAAA
1 AAGAAAA
15774302 ATGAGAACGT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
10 9 0.36
11 5 0.20
12 11 0.44
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.00
Consensus pattern (11 bp):
AAGAAAAGAAA
Found at i:15774281 original size:6 final size:6
Alignment explanation
Indices: 15774270--15774302 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
15774260 AGAAGAAAAG
15774270 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAA
15774303 TGAGAACGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:15775890 original size:37 final size:37
Alignment explanation
Indices: 15775843--15775916 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
15775833 TATTTAAGTG
*
15775843 TTTTA-TTTTTTATTTATCTACTTTTTATTTGTGTATA
1 TTTTAGTTTTTTATTTATCTAC-CTTTATTTGTGTATA
15775880 TTTTAGTTTTTTATTTATCTACCTTTATTTGTGTATA
1 TTTTAGTTTTTTATTTATCTACCTTTATTTGTGTATA
15775917 CATTATTGAT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
37 19 0.54
38 16 0.46
ACGTcount: A:0.19, C:0.07, G:0.07, T:0.68
Consensus pattern (37 bp):
TTTTAGTTTTTTATTTATCTACCTTTATTTGTGTATA
Found at i:15789740 original size:36 final size:37
Alignment explanation
Indices: 15789669--15789741 Score: 121
Period size: 37 Copynumber: 2.0 Consensus size: 37
15789659 TATTTAAGTG
*
15789669 TTTTAGTTTTTATTTATCTACTTTTTATTTATGTATA
1 TTTTAGTTTTTATTTATCTACTCTTTATTTATGTATA
*
15789706 TTTTAGTTTTTATTTATCTAC-CTTTATTTGTGTATA
1 TTTTAGTTTTTATTTATCTACTCTTTATTTATGTATA
15789742 CATTATTGAT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
36 13 0.38
37 21 0.62
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (37 bp):
TTTTAGTTTTTATTTATCTACTCTTTATTTATGTATA
Found at i:15794543 original size:5 final size:5
Alignment explanation
Indices: 15794533--15794559 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
15794523 TTCATTCACT
15794533 CAAGC CAAGC CAAGC CAAGC CAAGC CA
1 CAAGC CAAGC CAAGC CAAGC CAAGC CA
15794560 GCCCATTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.41, G:0.19, T:0.00
Consensus pattern (5 bp):
CAAGC
Found at i:15797073 original size:12 final size:11
Alignment explanation
Indices: 15797034--15797079 Score: 58
Period size: 11 Copynumber: 4.2 Consensus size: 11
15797024 AATTTTAAAC
15797034 TTTAAAACAAT
1 TTTAAAACAAT
*
15797045 TTTATAA-AAT
1 TTTAAAACAAT
*
15797055 ATTAAAACCAAT
1 TTTAAAA-CAAT
15797067 TTTAAAACAAT
1 TTTAAAACAAT
15797078 TT
1 TT
15797080 GAGGGCTGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
10 8 0.28
11 12 0.41
12 9 0.31
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.39
Consensus pattern (11 bp):
TTTAAAACAAT
Found at i:15802473 original size:125 final size:125
Alignment explanation
Indices: 15802243--15802666 Score: 645
Period size: 125 Copynumber: 3.4 Consensus size: 125
15802233 ACGTGGACGC
* * *
15802243 GAAGAATTTGTGAAATCGCGCCCTCCTGGACGCGCTTTTGCTACAGTTGGTCCTGGAAGAAATAA
1 GAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAA
15802308 TTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTTTATGA
66 TTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTTTATGA
* ** * *
15802368 GAAGAATTTGTTAAATCGCGCCCACGTGGACATGCTTTTGCTACAGTAGGTCCT-GAAAAAATTA
1 GAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAA
* * * * *
15802432 TTTCAAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTCAAGCAGGATGATATT-TGA
66 TTTCGAGTTGACGTTTCTGAGCAAATAGTAT-AAAATCGCTTCTACCAGGATGCT-TTATGA
* * *
15802493 GAAGAATTTCTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTTGGTCCTGGAAGAAATAA
1 GAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAA
* *
15802558 TTTCGAGTTGACGTTTCTAAGCAAATAGTATAAAATCACTTCTACCAGGATGCTTTATGA
66 TTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTTTATGA
*
15802618 GAAGAATTTGTGAAATCGCGCCCACGTGGACGTGCTTTTGCTACAGTAG
1 GAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTAG
15802667 CATGTTTGGG
Statistics
Matches: 263, Mismatches: 32, Indels: 8
0.87 0.11 0.03
Matches are distributed among these distances:
124 40 0.15
125 184 0.70
126 39 0.15
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (125 bp):
GAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGGAAGAAATAA
TTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTTTATGA
Found at i:15806358 original size:18 final size:18
Alignment explanation
Indices: 15806335--15806374 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
15806325 GACTCGGAAA
* *
15806335 AGGATACATGTAAGGGTT
1 AGGATACATATAAGGGCT
15806353 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
15806371 AGGA
1 AGGA
15806375 AACGCACCTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.38, C:0.07, G:0.33, T:0.23
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:15808279 original size:51 final size:51
Alignment explanation
Indices: 15808184--15808281 Score: 126
Period size: 51 Copynumber: 1.9 Consensus size: 51
15808174 AATTATTTAA
* *
15808184 AAATAGGGATTTAAGAGAAATTTAAGAAGAACTTGTGAGCAAATTGAAATT
1 AAATAGGGATTTAAGAGAAATTTAAGAAGAAATTGAGAGCAAATTGAAATT
* * * *
15808235 AAATATGGATTTGAGAGAAATTT-TGAAGGAAATTGAGAGGAAATTGA
1 AAATAGGGATTTAAGAGAAATTTAAGAA-GAAATTGAGAGCAAATTGA
15808282 GAGAAAATTT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
50 3 0.08
51 37 0.93
ACGTcount: A:0.46, C:0.02, G:0.24, T:0.28
Consensus pattern (51 bp):
AAATAGGGATTTAAGAGAAATTTAAGAAGAAATTGAGAGCAAATTGAAATT
Found at i:15808293 original size:23 final size:23
Alignment explanation
Indices: 15808243--15808296 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
15808233 TTAAATATGG
*
15808243 ATTTGAGA-GAAATTTTGAAGGAA
1 ATTTGAGAGGAAA-TTTGAAGAAA
15808266 A-TTGAGAGGAAA-TTGAGAGAAA
1 ATTTGAGAGGAAATTTGA-AGAAA
15808288 ATTTGAGAG
1 ATTTGAGAG
15808297 AGGATTAGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
21 4 0.15
22 11 0.41
23 12 0.44
ACGTcount: A:0.44, C:0.00, G:0.30, T:0.26
Consensus pattern (23 bp):
ATTTGAGAGGAAATTTGAAGAAA
Found at i:15808295 original size:12 final size:12
Alignment explanation
Indices: 15808243--15808297 Score: 62
Period size: 11 Copynumber: 4.8 Consensus size: 12
15808233 TTAAATATGG
15808243 ATTTGAGAGAAA
1 ATTTGAGAGAAA
* *
15808255 TTTTGA-AGGAA
1 ATTTGAGAGAAA
*
15808266 A-TTGAGAGGAA
1 ATTTGAGAGAAA
15808277 A-TTGAGAGAAA
1 ATTTGAGAGAAA
15808288 ATTTGAGAGA
1 ATTTGAGAGA
15808298 GGATTAGTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
10 4 0.11
11 20 0.54
12 13 0.35
ACGTcount: A:0.45, C:0.00, G:0.29, T:0.25
Consensus pattern (12 bp):
ATTTGAGAGAAA
Found at i:15809344 original size:21 final size:22
Alignment explanation
Indices: 15809306--15809349 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
15809296 TCTCTTATAC
*
15809306 TTTGTTCTTATTTGTTGT-TTG
1 TTTGTTCTTATTTCTTGTATTG
15809327 TTTGTTCATTA-TTCTTGTATTG
1 TTTGTTC-TTATTTCTTGTATTG
15809349 T
1 T
15809350 ATTTTTGCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.09, C:0.07, G:0.16, T:0.68
Consensus pattern (22 bp):
TTTGTTCTTATTTCTTGTATTG
Found at i:15811797 original size:26 final size:26
Alignment explanation
Indices: 15811768--15811904 Score: 148
Period size: 26 Copynumber: 5.3 Consensus size: 26
15811758 TAAAAAACGA
*
15811768 AAGCCTTTGTGGTGTATCTAAAATGG
1 AAGCCTTTGTGGCGTATCTAAAATGG
* * * *
15811794 AAGCCTTTTTGGCATATCTGAATTGG
1 AAGCCTTTGTGGCGTATCTAAAATGG
* *
15811820 AAGCCTTTGTAGCGTATCTAAATTGG
1 AAGCCTTTGTGGCGTATCTAAAATGG
** * * **
15811846 AAGTGTTTGTGGCGTATTTGAAATTA
1 AAGCCTTTGTGGCGTATCTAAAATGG
15811872 AAGCCTTTGTGGCGTATCTAAAATGG
1 AAGCCTTTGTGGCGTATCTAAAATGG
*
15811898 GAGCCTT
1 AAGCCTT
15811905 CGATTTTTTG
Statistics
Matches: 87, Mismatches: 24, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
26 87 1.00
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.36
Consensus pattern (26 bp):
AAGCCTTTGTGGCGTATCTAAAATGG
Found at i:15811847 original size:52 final size:52
Alignment explanation
Indices: 15811767--15811904 Score: 170
Period size: 52 Copynumber: 2.7 Consensus size: 52
15811757 CTAAAAAACG
* *
15811767 AAAGCCTTTGTGGTGTATCTAAAATGGAAGCCTTTTTGGCATATCTG-AATT
1 AAAGCCTTTGTGGCGTATCTAAAATGGAAGCCTTTGTGGCATATCTGAAATT
* * * ** * *
15811818 GGAAGCCTTTGTAGCGTATCTAAATTGGAAGTGTTTGTGGCGTATTTGAAATT
1 -AAAGCCTTTGTGGCGTATCTAAAATGGAAGCCTTTGTGGCATATCTGAAATT
*
15811871 AAAGCCTTTGTGGCGTATCTAAAATGGGAGCCTT
1 AAAGCCTTTGTGGCGTATCTAAAATGGAAGCCTT
15811905 CGATTTTTTG
Statistics
Matches: 70, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
52 66 0.94
53 4 0.06
ACGTcount: A:0.26, C:0.13, G:0.25, T:0.36
Consensus pattern (52 bp):
AAAGCCTTTGTGGCGTATCTAAAATGGAAGCCTTTGTGGCATATCTGAAATT
Found at i:15813920 original size:19 final size:19
Alignment explanation
Indices: 15813896--15813948 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
15813886 TATATATACT
*
15813896 AAATAAATTAATAATAATA
1 AAATAAATTAATAATAAAA
* *
15813915 AAATAAAATAAT-TTAAAA
1 AAATAAATTAATAATAAAA
15813933 AAATCAAATTAA-AATA
1 AAAT-AAATTAATAATA
15813949 TTAATAAACT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
18 8 0.30
19 19 0.70
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (19 bp):
AAATAAATTAATAATAAAA
Found at i:15813930 original size:24 final size:24
Alignment explanation
Indices: 15813896--15813956 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 24
15813886 TATATATACT
*
15813896 AAATAAATTAATAATAAT-AAAATA
1 AAAT-AATTAATAAAAATCAAAATA
*
15813920 AAATAATTTAA-AAAAATCAAATTA
1 AAATAA-TTAATAAAAATCAAAATA
15813944 AAAT-ATTAATAAA
1 AAATAATTAATAAA
15813957 CTAATATTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
22 4 0.12
23 11 0.34
24 17 0.53
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.30
Consensus pattern (24 bp):
AAATAATTAATAAAAATCAAAATA
Found at i:15815692 original size:49 final size:49
Alignment explanation
Indices: 15815623--15815723 Score: 130
Period size: 49 Copynumber: 2.1 Consensus size: 49
15815613 CTCGTTTTCT
* * * *
15815623 CGATACCATAGTCCAACTATGGTCTTACATGTAATCACTTATCACATAC
1 CGATACCATAGCCCAACTATGGTCTTACACGGAATCACATATCACATAC
* * * *
15815672 CGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATATCACTTAC
1 CGATACCATAGCCCAACTATGGTCTTACACGGAATCACATATCACATAC
15815721 CGA
1 CGA
15815724 AAGTACTCAT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.28
Consensus pattern (49 bp):
CGATACCATAGCCCAACTATGGTCTTACACGGAATCACATATCACATAC
Found at i:15818385 original size:4 final size:4
Alignment explanation
Indices: 15818373--15818403 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
15818363 TAAAATTAGT
15818373 TAAA T-AA TAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
15818404 AAGGATAGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
TAAA
Found at i:15818801 original size:31 final size:31
Alignment explanation
Indices: 15818708--15818803 Score: 165
Period size: 31 Copynumber: 3.1 Consensus size: 31
15818698 GGCAAATTAC
* *
15818708 AAGAGTAATTGAATCCTAATAAAATTCTTTC
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
15818739 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
15818771 AAGAGTAATTGAATCCTAATAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
15818802 AA
1 AA
15818804 ATTATCTAAG
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
31 33 0.53
32 29 0.47
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.32
Consensus pattern (31 bp):
AAGAGTAATTGAATCCTAATAAAACTCTTTA
Found at i:15822630 original size:31 final size:31
Alignment explanation
Indices: 15822537--15822632 Score: 174
Period size: 31 Copynumber: 3.1 Consensus size: 31
15822527 GGAAAATTAC
*
15822537 AAGAGTAATTGAATCCTAATAAAACTCTTTC
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
15822568 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
15822600 AAGAGTAATTGAATCCTAATAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
15822631 AA
1 AA
15822633 ATTATCTAAG
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
31 33 0.52
32 30 0.48
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.31
Consensus pattern (31 bp):
AAGAGTAATTGAATCCTAATAAAACTCTTTA
Found at i:15825354 original size:43 final size:43
Alignment explanation
Indices: 15825306--15825418 Score: 142
Period size: 43 Copynumber: 2.6 Consensus size: 43
15825296 GTGATTTCGC
* *
15825306 GTAAGACCACATCTGGGACGTTGGCATCGA-CTTGTGTTTTCAT
1 GTAAGACCACATCTGGGACGTTGGCATCGATC-TGTGATTACAT
*
15825349 GTAAGACC-CTATCTGGGACAG-CGGCATCGATCTGTGATTACAT
1 GTAAGACCAC-ATCTGGGAC-GTTGGCATCGATCTGTGATTACAT
*
15825392 GTAAGACCACGTCTGGGACGTTGGCAT
1 GTAAGACCACATCTGGGACGTTGGCAT
15825419 TGTACGAACC
Statistics
Matches: 60, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.03
43 55 0.92
44 3 0.05
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (43 bp):
GTAAGACCACATCTGGGACGTTGGCATCGATCTGTGATTACAT
Found at i:15826185 original size:26 final size:28
Alignment explanation
Indices: 15826156--15826214 Score: 88
Period size: 27 Copynumber: 2.2 Consensus size: 28
15826146 AATAAACACC
*
15826156 AAAAATTTATTTT-AAAAT-AAAAAATA
1 AAAAATGTATTTTAAAAATAAAAAAATA
15826182 AAAAA-GTATTTTAAAAATAAAAAAATA
1 AAAAATGTATTTTAAAAATAAAAAAATA
15826209 AAAAAT
1 AAAAAT
15826215 AAAAATATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 6 0.21
26 10 0.34
27 13 0.45
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (28 bp):
AAAAATGTATTTTAAAAATAAAAAAATA
Found at i:15826563 original size:19 final size:20
Alignment explanation
Indices: 15826525--15826564 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
15826515 TTTTGAGTGA
15826525 ATTATGGTTTAGGCATATTTTG
1 ATTATGGTTTA-G-ATATTTTG
15826547 ATTATGGTTTA-ATATTTT
1 ATTATGGTTTAGATATTTT
15826565 ATGGATAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.39
22 11 0.61
ACGTcount: A:0.25, C:0.03, G:0.17, T:0.55
Consensus pattern (20 bp):
ATTATGGTTTAGATATTTTG
Found at i:15830393 original size:20 final size:20
Alignment explanation
Indices: 15830357--15830395 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
15830347 TTTGCTTTCA
*
15830357 AATTTTACATTTTTTTTGTT
1 AATTTTACATTTATTTTGTT
15830377 AATTTTAC-TCTTATTTTGT
1 AATTTTACAT-TTATTTTGT
15830396 AAAAGTACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.21, C:0.08, G:0.05, T:0.67
Consensus pattern (20 bp):
AATTTTACATTTATTTTGTT
Found at i:15832291 original size:23 final size:23
Alignment explanation
Indices: 15832251--15832298 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
15832241 TTCCTGATTA
* *
15832251 ATGGCTCTCTAGAGCTTCCCGAT
1 ATGGCTCGCTAGAACTTCCCGAT
* *
15832274 ATGGCTCGCTTGAACTTCCTGAT
1 ATGGCTCGCTAGAACTTCCCGAT
15832297 AT
1 AT
15832299 ATGGCTATTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.19, C:0.27, G:0.21, T:0.33
Consensus pattern (23 bp):
ATGGCTCGCTAGAACTTCCCGAT
Found at i:15832321 original size:73 final size:73
Alignment explanation
Indices: 15832238--15832377 Score: 212
Period size: 73 Copynumber: 1.9 Consensus size: 73
15832228 ACTCTTTGTG
* *
15832238 AGCTTCCTGATTAATGGCTC-TCTAGAGCTTCCCGATA-TGGCTCGCTTGAACTTCCTGATATAT
1 AGCTTCCTGATTAATGGCTCTTC-AGAGCTACCCGATATTGGCTCGCATGAACTTCCTGA-ATAT
15832301 GGCTATTCGT
64 GGCTATTCGT
* *
15832311 AGCTTCCTGATTAATGGCTCTTCAGAGCTACCCGTTATTGGCTCGCATGAGCTTCCTGAATATGG
1 AGCTTCCTGATTAATGGCTCTTCAGAGCTACCCGATATTGGCTCGCATGAACTTCCTGAATATGG
15832376 CT
66 CT
15832378 CTTATGAGCT
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
73 40 0.66
74 21 0.34
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.34
Consensus pattern (73 bp):
AGCTTCCTGATTAATGGCTCTTCAGAGCTACCCGATATTGGCTCGCATGAACTTCCTGAATATGG
CTATTCGT
Found at i:15832339 original size:25 final size:25
Alignment explanation
Indices: 15832237--15832390 Score: 96
Period size: 25 Copynumber: 6.3 Consensus size: 25
15832227 GACTCTTTGT
15832237 GAGCTTCCTGATTAATGGCTC-TCTA
1 GAGCTTCCTGATTAATGGCTCTTC-A
*
15832262 GAGCTTCCCGA-T-ATGGCTCGCTT--
1 GAGCTTCCTGATTAATGGCT--CTTCA
* *
15832285 GAACTTCCTGA-TATATGGCTATTC-
1 GAGCTTCCTGATTA-ATGGCTCTTCA
15832309 GTAGCTTCCTGATTAATGGCTCTTCA
1 G-AGCTTCCTGATTAATGGCTCTTCA
* * * *
15832335 GAGCTACCCG-TTATTGGCTC-GCA
1 GAGCTTCCTGATTAATGGCTCTTCA
*
15832358 TGAGCTTCCTGAAT-ATGGCTCTT-A
1 -GAGCTTCCTGATTAATGGCTCTTCA
15832382 TGAGCTTCC
1 -GAGCTTCC
15832391 CGTTATACAA
Statistics
Matches: 102, Mismatches: 15, Indels: 25
0.72 0.11 0.18
Matches are distributed among these distances:
23 20 0.20
24 35 0.34
25 43 0.42
26 4 0.04
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.34
Consensus pattern (25 bp):
GAGCTTCCTGATTAATGGCTCTTCA
Found at i:15832437 original size:25 final size:25
Alignment explanation
Indices: 15832381--15832447 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 25
15832371 TATGGCTCTT
*
15832381 ATGAGCTTCCCGTTATACAACCCGA
1 ATGAGCTTCCTGTTATACAACCCGA
* * *
15832406 ATAAGCTTCCTGTTATACAGCTC-A
1 ATGAGCTTCCTGTTATACAACCCGA
*
15832430 CATGAGCTTCCTATTATA
1 -ATGAGCTTCCTGTTATA
15832448 TGGCTCGAGA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
24 1 0.03
25 34 0.97
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.31
Consensus pattern (25 bp):
ATGAGCTTCCTGTTATACAACCCGA
Found at i:15835216 original size:9 final size:9
Alignment explanation
Indices: 15835184--15835235 Score: 52
Period size: 9 Copynumber: 5.8 Consensus size: 9
15835174 TTATCACTAT
15835184 TATTATTAC
1 TATTATTAC
*
15835193 TACTT-TTAT
1 TA-TTATTAC
*
15835202 TATTATTAA
1 TATTATTAC
15835211 TATTATTAC
1 TATTATTAC
* *
15835220 TATTGTTGC
1 TATTATTAC
15835229 TATTATT
1 TATTATT
15835236 GATAATATTA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
8 2 0.06
9 31 0.89
10 2 0.06
ACGTcount: A:0.29, C:0.08, G:0.04, T:0.60
Consensus pattern (9 bp):
TATTATTAC
Found at i:15835216 original size:15 final size:15
Alignment explanation
Indices: 15835181--15835223 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
15835171 GTATTATCAC
* *
15835181 TATTATTATTACTAC
1 TATTATTATTATTAA
*
15835196 TTTTATTATTATTAA
1 TATTATTATTATTAA
*
15835211 TATTATTACTATT
1 TATTATTATTATT
15835224 GTTGCTATTA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (15 bp):
TATTATTATTATTAA
Found at i:15835232 original size:27 final size:27
Alignment explanation
Indices: 15835184--15835245 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
15835174 TTATCACTAT
*
15835184 TATTATTACTACTTTTATTATTATTAA
1 TATTATTACTACTTTTACTATTATTAA
* *
15835211 TATTATTACTA-TTGTTGCTATTATTGA
1 TATTATTACTACTT-TTACTATTATTAA
*
15835238 TAATATTA
1 TATTATTA
15835246 TTCGCTTATA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 2 0.07
27 28 0.93
ACGTcount: A:0.32, C:0.06, G:0.05, T:0.56
Consensus pattern (27 bp):
TATTATTACTACTTTTACTATTATTAA
Found at i:15838238 original size:21 final size:22
Alignment explanation
Indices: 15838212--15838258 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
15838202 CTTTATATGC
*
15838212 ATTTTTGAAGAGTGAGGATCAA
1 ATTTTTGAAGAGTAAGGATCAA
15838234 ATTTTTGAAGAGTAAGGATCAA
1 ATTTTTGAAGAGTAAGGATCAA
15838256 ATT
1 ATT
15838259 AACAAAAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.23, T:0.34
Consensus pattern (22 bp):
ATTTTTGAAGAGTAAGGATCAA
Found at i:15859115 original size:44 final size:44
Alignment explanation
Indices: 15858797--15859134 Score: 191
Period size: 44 Copynumber: 7.7 Consensus size: 44
15858787 AGTGAAACCT
* * ** *
15858797 CAAATCCTATCTCCCTGAAGTTGCAGTAGAGTGGATTGAAGATA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA
** * * * * * **
15858841 GCAGGTCTTATCCCCCTGAATTTACAGTGGGGCAGACTGAAGATGG
1 -CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-TTA
* * * * *
15858887 CGAATCTTATCTCCCTGAAGTTGTAGTGGAGCAAATTAAAGTCA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA
* * * * * *
15858931 -ATAATCCTATCTCTCTGAAGTTGCAGTGGAGCGGATTAAAATGA
1 CA-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA
*** * * * * * *
15858975 TGGATCTTATCTCTCTAAAGTTGCAGTAGAGTAGATCGCA--T-
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA
** * * * ** *
15859016 CAGGTCTTATTTCCCTGAAGTTACAGTAGAGCAGACCGAA-TAAA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGT-TA
* *
15859060 CCAATCTTATCTCCCTGAAGTTGCAGTGGAGCATATTGAAGTTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA
* *
15859104 CAAATCCTATCTCCCTGACGTTGCAGTGGAG
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAG
15859135 TGGATCGAAG
Statistics
Matches: 216, Mismatches: 70, Indels: 15
0.72 0.23 0.05
Matches are distributed among these distances:
41 30 0.14
44 125 0.58
45 61 0.28
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (44 bp):
CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA
Found at i:15859887 original size:23 final size:23
Alignment explanation
Indices: 15859856--15859900 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
15859846 GTTAGATGTC
15859856 TTACCTTCTGTTT-TTTTATTTAT
1 TTACCTTCT-TTTCTTTTATTTAT
* *
15859879 TTACTTTCTTTTCTTTTTTTTA
1 TTACCTTCTTTTCTTTTATTTA
15859901 AAAAAGACCG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 3 0.16
23 16 0.84
ACGTcount: A:0.11, C:0.13, G:0.02, T:0.73
Consensus pattern (23 bp):
TTACCTTCTTTTCTTTTATTTAT
Found at i:15862343 original size:19 final size:18
Alignment explanation
Indices: 15862319--15862355 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
15862309 TAGTTGCGTC
15862319 AAACTTAGAAATGTTGAAT
1 AAACTTAGAAATG-TGAAT
15862338 AAACTTAGAAATGTGAAT
1 AAACTTAGAAATGTGAAT
15862356 TCAAAAAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.49, C:0.05, G:0.16, T:0.30
Consensus pattern (18 bp):
AAACTTAGAAATGTGAAT
Found at i:15864427 original size:14 final size:15
Alignment explanation
Indices: 15864394--15864422 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
15864384 TTAAACCGAA
15864394 AAAATAAAAAATTTC
1 AAAATAAAAAATTTC
15864409 AAAATAAAAAATTT
1 AAAATAAAAAATTT
15864423 TAAATTCCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (15 bp):
AAAATAAAAAATTTC
Found at i:15866721 original size:42 final size:42
Alignment explanation
Indices: 15866662--15866741 Score: 124
Period size: 42 Copynumber: 1.9 Consensus size: 42
15866652 GGCGCTTGTA
15866662 CAACAAATGCCGCTAAAGAACATGAGCTATAGCGGCGCAAAC
1 CAACAAATGCCGCTAAAGAACATGAGCTATAGCGGCGCAAAC
* ** *
15866704 CAACAAATGCCGCTAAAGCACATGTTCTTTAGCGGCGC
1 CAACAAATGCCGCTAAAGAACATGAGCTATAGCGGCGC
15866742 TTTCTTCACA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.35, C:0.28, G:0.21, T:0.16
Consensus pattern (42 bp):
CAACAAATGCCGCTAAAGAACATGAGCTATAGCGGCGCAAAC
Found at i:15866763 original size:43 final size:42
Alignment explanation
Indices: 15866623--15866765 Score: 137
Period size: 43 Copynumber: 3.4 Consensus size: 42
15866613 TTACAGAAAT
* ** *
15866623 AAATACCGCTAAAGGTCATGTTCTTTAGCGGCGCTTGTACAAC
1 AAATGCCGCTAAAGCACATGTTCTTTAGCGGCGCTTCT-CAAC
* ** * **
15866666 AAATGCCGCTAAAGAACATGAGCTATAGCGGCGCAAAC-CAAC
1 AAATGCCGCTAAAGCACATGTTCTTTAGCGGCGC-TTCTCAAC
15866708 AAATGCCGCTAAAGCACATGTTCTTTAGCGGCGCTTTCTTC-AC
1 AAATGCCGCTAAAGCACATGTTCTTTAGCGGCGC-TTC-TCAAC
*
15866751 AAACGCCGCTAAAGC
1 AAATGCCGCTAAAGC
15866766 CGCTAAAAGA
Statistics
Matches: 80, Mismatches: 17, Indels: 6
0.78 0.17 0.06
Matches are distributed among these distances:
42 35 0.44
43 44 0.55
44 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (42 bp):
AAATGCCGCTAAAGCACATGTTCTTTAGCGGCGCTTCTCAAC
Found at i:15866781 original size:52 final size:53
Alignment explanation
Indices: 15866712--15866814 Score: 138
Period size: 52 Copynumber: 2.0 Consensus size: 53
15866702 ACCAACAAAT
* * *
15866712 GCCGCTAAAGCACATGTTCTTTAGCGGCGCTTTCTTC-ACAAACGCCGCTAAA
1 GCCGCTAAAGCAAATGTTCTTTAGCGACGCTTTATTCTACAAACGCCGCTAAA
* *
15866764 GCCGCTAAAAG-AAATGTTCTTTAGCGACGTTTTATTCTACAAATGCCGCTA
1 GCCGCT-AAAGCAAATGTTCTTTAGCGACGCTTTATTCTACAAACGCCGCTA
15866815 TAAAACATGA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
52 28 0.64
53 16 0.36
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.28
Consensus pattern (53 bp):
GCCGCTAAAGCAAATGTTCTTTAGCGACGCTTTATTCTACAAACGCCGCTAAA
Found at i:15867248 original size:21 final size:21
Alignment explanation
Indices: 15867224--15867274 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
15867214 TTCTTTTGAA
* *
15867224 CCTCTGCTTCTCTCGCTGCAG
1 CCTCTGCTTCCCTAGCTGCAG
**
15867245 CCTCTGCTTCCCTAGCTGTTG
1 CCTCTGCTTCCCTAGCTGCAG
15867266 CCTCTGCTT
1 CCTCTGCTT
15867275 TTAGTTGTAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.04, C:0.41, G:0.18, T:0.37
Consensus pattern (21 bp):
CCTCTGCTTCCCTAGCTGCAG
Found at i:15873748 original size:101 final size:101
Alignment explanation
Indices: 15873633--15873918 Score: 466
Period size: 101 Copynumber: 2.8 Consensus size: 101
15873623 AAAGTGATGG
*
15873633 TCACGTTTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCATGTGTAGTAC
*
15873698 TATGTGCAGGCTACTATGCGTATCAGAGAGCTTCAA
66 TATGTGCAGGCTACTATGCGTACCAGAGAGCTTCAA
15873734 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCATGTGTAGTAC
* * *
15873799 TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
66 TATGTGCAGGCTACTATGCGTACCAGAGAGCTTCAA
* * *
15873835 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTCTACCGGATAGTGAT-GGTCACATGTGTAGT
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGA-A-TGATAGGTCGCATGTGTAGT
*
15873899 ACTATGTGCATGCTACTATG
64 ACTATGTGCAGGCTACTATG
15873919 TGAATCCGCA
Statistics
Matches: 174, Mismatches: 9, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
101 136 0.78
102 34 0.20
103 4 0.02
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCATGTGTAGTAC
TATGTGCAGGCTACTATGCGTACCAGAGAGCTTCAA
Found at i:15873753 original size:51 final size:50
Alignment explanation
Indices: 15873633--15873865 Score: 213
Period size: 50 Copynumber: 4.6 Consensus size: 50
15873623 AAAGTGATGG
* * * * * *
15873633 TCACGTTTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATG-AT-AGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGAA-GCTTCA-A
* * *
15873683 TCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTATCAGAGAGCTTCAA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGA-AGCTTCAA
* * * * *
15873734 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATG-AT-AGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGAA-GCTTCA-A
* * * *
15873784 TCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGA-AGCTTCAA
*
15873835 TCACGTGTGTAGTACTATGTGTAGGCTACTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTA
15873866 CGTCTACCGG
Statistics
Matches: 146, Mismatches: 29, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
49 1 0.01
50 75 0.51
51 69 0.47
52 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGAAGCTTCAA
Found at i:15873874 original size:51 final size:49
Alignment explanation
Indices: 15873631--15873916 Score: 245
Period size: 51 Copynumber: 5.7 Consensus size: 49
15873621 TGAAAGTGAT
* * * * *
15873631 GGTCACGTTTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATA
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTCTACCAGAA-GTTA
* * *
15873681 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATG-CGTATCAGAGAGCTTCA
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTC-TACCAGA-AG-TT-A
* * * * *
15873733 -ATCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATA
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTCTACCAGAA-GTTA
* * * *
15873782 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATG-CGTACCGGATAGCTTC
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTC-TACCAGA-AG-TTA
* * * * *
15873833 GATCACGTGTGTAGTACTATGTGTAGGCTACTACGTCTACCGGATAGTGA
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTCTACCAGA-AGTTA
*
15873883 TGGTCACATGTGTAGTACTATGTGCATGCTACTA
1 -GGTCACATGTGTAGTACTATGTGCAGGCTACTA
15873917 TGTGAATCCG
Statistics
Matches: 188, Mismatches: 36, Indels: 23
0.76 0.15 0.09
Matches are distributed among these distances:
49 1 0.01
50 76 0.40
51 109 0.58
52 2 0.01
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTCTACCAGAAGTTA
Found at i:15874002 original size:43 final size:43
Alignment explanation
Indices: 15873928--15874139 Score: 256
Period size: 43 Copynumber: 5.0 Consensus size: 43
15873918 GTGAATCCGC
* * *
15873928 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCATCGT
1 ATCATTGACTGTAAAGGTGGTTGCTAAGTGCTGATTCCACCGT
* * * *
15873971 ATCCTTGACTGTGAAAGG-GGTTGCTATGTGCTGATTCC-CTGC
1 ATCATTGACTGT-AAAGGTGGTTGCTAAGTGCTGATTCCACCGT
* *
15874013 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGT
1 ATCATTGACTGTAAAGGTGGTTGCTAAGTGCTGATTCCACCGT
* *
15874056 ATCCTTGACTGTGAAAGG-GGTTGCTATGTGCTGATTCC-CCGT
1 ATCATTGACTGT-AAAGGTGGTTGCTAAGTGCTGATTCCACCGT
15874098 ATCATTGA-T-TATAAGGTGGTTGCTAAGTGCTGATTCCACCGT
1 ATCATTGACTGTA-AAGGTGGTTGCTAAGTGCTGATTCCACCGT
15874140 GTAACGGTTA
Statistics
Matches: 143, Mismatches: 19, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
39 1 0.01
40 5 0.03
41 25 0.17
42 44 0.31
43 58 0.41
44 10 0.07
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (43 bp):
ATCATTGACTGTAAAGGTGGTTGCTAAGTGCTGATTCCACCGT
Found at i:15874069 original size:85 final size:85
Alignment explanation
Indices: 15873924--15874139 Score: 389
Period size: 85 Copynumber: 2.6 Consensus size: 85
15873914 CTATGTGAAT
*
15873924 CCGCATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCATCGTATCCTTGACTGTGAAAGG
1 CCGCATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGACTGTGAAAGG
15873989 GGTTGCTATGTGCTGATTCC
66 GGTTGCTATGTGCTGATTCC
*
15874009 CTGCATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGACTGTGAAAGG
1 CCGCATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGACTGTGAAAGG
15874074 GGTTGCTATGTGCTGATTCC
66 GGTTGCTATGTGCTGATTCC
* *
15874094 CCGTATCATTGATTAT-AAGGTGGTTGCTAAGTGCTGATTCCACCGT
1 CCGCATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGT
15874140 GTAACGGTTA
Statistics
Matches: 126, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
84 30 0.24
85 96 0.76
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.33
Consensus pattern (85 bp):
CCGCATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGACTGTGAAAGG
GGTTGCTATGTGCTGATTCC
Found at i:15875822 original size:7 final size:7
Alignment explanation
Indices: 15875812--15875921 Score: 94
Period size: 7 Copynumber: 14.0 Consensus size: 7
15875802 TGATATATTT
15875812 TTATGTA
1 TTATGTA
15875819 TTATGTAA
1 TTATGT-A
15875827 GTTATGTA
1 -TTATGTA
15875835 TTATGTAA
1 TTATGT-A
15875843 GTTATGTAA
1 -TTATGT-A
*
15875852 GTTGTGTA
1 -TTATGTA
15875860 TTATGTGA
1 TTATGT-A
15875868 GTTATGTA
1 -TTATGTA
*
15875876 GGTTGTGTA
1 --TTATGTA
15875885 TTATGTAA
1 TTATGT-A
15875893 GTTATGTA
1 -TTATGTA
15875901 TTATGTA
1 TTATGTA
15875908 TTATGTA
1 TTATGTA
15875915 TTATGTA
1 TTATGTA
15875922 AGTACTGTAA
Statistics
Matches: 90, Mismatches: 4, Indels: 18
0.80 0.04 0.16
Matches are distributed among these distances:
7 43 0.48
8 8 0.09
9 39 0.43
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.51
Consensus pattern (7 bp):
TTATGTA
Found at i:15875833 original size:9 final size:9
Alignment explanation
Indices: 15875819--15876482 Score: 551
Period size: 9 Copynumber: 77.2 Consensus size: 9
15875809 TTTTTATGTA
15875819 TTATGTAAG
1 TTATGTAAG
15875828 TTATGT-A-
1 TTATGTAAG
15875835 TTATGTAAG
1 TTATGTAAG
15875844 TTATGTAAG
1 TTATGTAAG
*
15875853 TTGTGT-A-
1 TTATGTAAG
*
15875860 TTATGTGAG
1 TTATGTAAG
*
15875869 TTATGTAGG
1 TTATGTAAG
*
15875878 TTGTGT-A-
1 TTATGTAAG
15875885 TTATGTAAG
1 TTATGTAAG
15875894 TTATGT-A-
1 TTATGTAAG
15875901 TTATGT-A-
1 TTATGTAAG
15875908 TTATGT-A-
1 TTATGTAAG
15875915 TTATGTAAG
1 TTATGTAAG
15875924 -TACTGTAAG
1 TTA-TGTAAG
*
15875933 TAATGTAAG
1 TTATGTAAG
*
15875942 TTATATAAG
1 TTATGTAAG
*
15875951 TAATGT-A-
1 TTATGTAAG
15875958 TTATGTAAG
1 TTATGTAAG
*
15875967 TTGTGTATA-
1 TTATGTA-AG
*
15875976 ATAT-TAA-
1 TTATGTAAG
15875983 TTATGTAAG
1 TTATGTAAG
*
15875992 TTGTGT-A-
1 TTATGTAAG
*
15875999 TAATGTAAG
1 TTATGTAAG
*
15876008 TTA-GGAAGG
1 TTATGTAA-G
15876017 TTATGT-A-
1 TTATGTAAG
15876024 TTATGTAAG
1 TTATGTAAG
*
15876033 TTATTTAAG
1 TTATGTAAG
15876042 TTATGTAAG
1 TTATGTAAG
15876051 TTATGTAAG
1 TTATGTAAG
* *
15876060 TTATTTAAT
1 TTATGTAAG
15876069 TTATGTAAG
1 TTATGTAAG
15876078 TTATGTAAG
1 TTATGTAAG
15876087 TTATGTAAG
1 TTATGTAAG
* *
15876096 TTATTTAAT
1 TTATGTAAG
*
15876105 TTATGTAAA
1 TTATGTAAG
15876114 TTATGTAAG
1 TTATGTAAG
*
15876123 TTATGTAGG
1 TTATGTAAG
*
15876132 CTATGT-A-
1 TTATGTAAG
*
15876139 TTATGTAAA
1 TTATGTAAG
*
15876148 TAATGTAAG
1 TTATGTAAG
*
15876157 TTA-GGAAGG
1 TTATGTAA-G
15876166 TTATGT-A-
1 TTATGTAAG
15876173 TTATGTAAG
1 TTATGTAAG
15876182 TTATGTAAG
1 TTATGTAAG
15876191 TTATGTAAG
1 TTATGTAAG
* *
15876200 TTATCTAAT
1 TTATGTAAG
15876209 TTATGTAAG
1 TTATGTAAG
15876218 TTATGTAAG
1 TTATGTAAG
* *
15876227 TTATTTAAT
1 TTATGTAAG
15876236 TTATGTAAG
1 TTATGTAAG
*
15876245 TTAT-TTAG
1 TTATGTAAG
*** *
15876253 --AAAAAAA
1 TTATGTAAG
15876260 TTATGTAAG
1 TTATGTAAG
15876269 TTATGTACTAAG
1 TTATG---TAAG
15876281 TTATGT-A-
1 TTATGTAAG
*
15876288 TTATGTAAA
1 TTATGTAAG
*
15876297 TAATGTAAG
1 TTATGTAAG
*
15876306 TTA-GGAAGG
1 TTATGTAA-G
15876315 TTATGT-A-
1 TTATGTAAG
15876322 TTATGTAAG
1 TTATGTAAG
*
15876331 TTATTTAAG
1 TTATGTAAG
15876340 TTATGTAAG
1 TTATGTAAG
15876349 TTATGTAAG
1 TTATGTAAG
* *
15876358 TTATTTAAT
1 TTATGTAAG
15876367 TTATGTAAG
1 TTATGTAAG
15876376 TTATGTAAG
1 TTATGTAAG
* *
15876385 TTATTTAAT
1 TTATGTAAG
15876394 TTATGTAAG
1 TTATGTAAG
*
15876403 TCATGTAAG
1 TTATGTAAG
* *
15876412 TTATTTAAT
1 TTATGTAAG
15876421 TTATGTAAG
1 TTATGTAAG
15876430 TTATGTAAG
1 TTATGTAAG
*
15876439 TTATGTAGG
1 TTATGTAAG
*
15876448 CTATGT-A-
1 TTATGTAAG
*
15876455 TTATGTTA-
1 TTATGTAAG
*
15876463 TTATATAAG
1 TTATGTAAG
*
15876472 TTATGCAAG
1 TTATGTAAG
15876481 TT
1 TT
15876483 TATATATAAG
Statistics
Matches: 525, Mismatches: 89, Indels: 82
0.75 0.13 0.12
Matches are distributed among these distances:
6 1 0.00
7 84 0.16
8 43 0.08
9 383 0.73
10 5 0.01
12 9 0.02
ACGTcount: A:0.34, C:0.01, G:0.19, T:0.46
Consensus pattern (9 bp):
TTATGTAAG
Found at i:15876173 original size:149 final size:147
Alignment explanation
Indices: 15875875--15876445 Score: 648
Period size: 149 Copynumber: 3.9 Consensus size: 147
15875865 TGAGTTATGT
* * * *
15875875 AGGTTGTGTATTATGTAAGTTATGT-A-TTATGT-A-TTATGT-A-TTATGTAA-GTACTGTAAG
1 AGGTTATGTATTATGTAAGTTATTTAAGTTATGTAAGTTATGTAAGTTATTTAATTTA-TGTAAG
* * * * * * * * *
15875933 TAATGTAAGTTATATAAGTAATGTATTATGTAAGTTGTGTATA-ATAT-TAA-TTATGTAAGTTG
65 TTATGTAAGTTATGTAAGTTATTTAATATGTAAATTATGTA-AGTTATGTAAGTTATGT-A-TTA
15875995 TGT--ATAATGTAAGTTAGGA
127 TGTAAATAATGTAAGTTAGGA
15876014 AGGTTATGTATTATGTAAGTTATTTAAGTTATGTAAGTTATGTAAGTTATTTAATTTATGTAAGT
1 AGGTTATGTATTATGTAAGTTATTTAAGTTATGTAAGTTATGTAAGTTATTTAATTTATGTAAGT
* *
15876079 TATGTAAGTTATGTAAGTTATTTAATTTATGTAAATTATGTAAGTTATGTAGGCTATGTATTATG
66 TATGTAAGTTATGTAAGTTATTTAA--TATGTAAATTATGTAAGTTATGTAAGTTATGTATTATG
15876144 TAAATAATGTAAGTTAGGA
129 TAAATAATGTAAGTTAGGA
* * * * *
15876163 AGGTTATGTATTATGTAAGTTATGTAAGTTATGTAAGTTATCTAATTTATGTAAGTTATGTAAGT
1 AGGTTATGTATTATGTAAGTTATTTAAGTTATGTAAGTTATGTAAGTTATTTAATTTATGTAAGT
* * **
15876228 TATTTAATTTATGTAAGTTATTTAGA-A-AAAAATTATGTAAGTTATGTACTAAGTTATGTATTA
66 TATGTAAGTTATGTAAGTTATTTA-ATATGTAAATTATGTAAGTTATG---TAAGTTATGTATTA
15876291 TGTAAATAATGTAAGTTAGGA
127 TGTAAATAATGTAAGTTAGGA
15876312 AGGTTATGTATTATGTAAGTTATTTAAGTTATGTAAGTTATGTAAGTTATTTAATTTATGTAAGT
1 AGGTTATGTATTATGTAAGTTATTTAAGTTATGTAAGTTATGTAAGTTATTTAATTTATGTAAGT
* * * * * *
15876377 TATGTAAGTTATTTAATTTATGTAAGTCATGTAAGTTATTTAATTTATGTAAGTTATGTAAGTTA
66 TATGTAAGTTATGTAAGTTATTTAA-T-ATGTAAATTATGTAAGTTATGTAAGTTATGT-A-TTA
15876442 TGTA
127 TGTA
15876446 GGCTATGTAT
Statistics
Matches: 367, Mismatches: 41, Indels: 36
0.83 0.09 0.08
Matches are distributed among these distances:
139 23 0.06
140 1 0.00
141 6 0.02
142 1 0.00
143 6 0.02
144 1 0.00
145 34 0.09
146 20 0.05
147 22 0.06
148 4 0.01
149 225 0.61
150 2 0.01
151 8 0.02
152 14 0.04
ACGTcount: A:0.35, C:0.01, G:0.19, T:0.46
Consensus pattern (147 bp):
AGGTTATGTATTATGTAAGTTATTTAAGTTATGTAAGTTATGTAAGTTATTTAATTTATGTAAGT
TATGTAAGTTATGTAAGTTATTTAATATGTAAATTATGTAAGTTATGTAAGTTATGTATTATGTA
AATAATGTAAGTTAGGA
Found at i:15876669 original size:9 final size:9
Alignment explanation
Indices: 15876655--15876723 Score: 79
Period size: 9 Copynumber: 7.9 Consensus size: 9
15876645 TAAATATTTA
15876655 TAAGTTATG
1 TAAGTTATG
*
15876664 TAAGTTATT
1 TAAGTTATG
*
15876673 TAATTTATG
1 TAAGTTATG
15876682 TAAGTTATG
1 TAAGTTATG
15876691 TAAGTTATG
1 TAAGTTATG
* *
15876700 TAGGTAATG
1 TAAGTTATG
15876709 T-A-TTATG
1 TAAGTTATG
*
15876716 TTAGTTAT
1 TAAGTTAT
15876724 TATGTTATTA
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
7 5 0.10
8 1 0.02
9 44 0.88
ACGTcount: A:0.32, C:0.00, G:0.19, T:0.49
Consensus pattern (9 bp):
TAAGTTATG
Found at i:15876693 original size:256 final size:264
Alignment explanation
Indices: 15876399--15876924 Score: 793
Period size: 268 Copynumber: 2.0 Consensus size: 264
15876389 TTAATTTATG
15876399 TAAGTCATGTAAGTTATTTAATTTATGTAAGTTATGTAAGTTATGTA-G-G-CTA-T-G-TATTA
1 TAAGTCATGTAAGTTATTTAATTTATGTAAGTTATGTAAGTTATGTAGGAGACTATTAGTTATTA
15876458 TGTTATTATATAAGTTATGCAAGTTTATATATAAGTTTATATATTGTATGTTATTTAAGTTATGT
66 TGTTATTATATAAGTTATGCAAGTTTATATATAAGTTTATATATTGTATGTTATTTAAGTTATGT
*
15876523 ATTATGTAAGTTTATATATAAGTTATG-ATATGATTGATAAATTTGAGTTATGTAAGTTATG-CT
131 ATTATGTAAGTTTATATATAAGTTATGAATATGATTGATAAATTTGAGTTATGTAACTTATGAC-
15876586 AGGATCGATAAATTTTGAAAAAAAAAATAGATTTT-AAAA-ATATATATTAAAAATGTATATAAA
195 AGGATCGATAAATTTTG-AAAAAAAAATAGATTTTAAAAATATATATATTAAAAATGTATATAAA
15876649 TATTTA
259 TATTTA
* *
15876655 TAAGTTATGTAAGTTATTTAATTTATGTAAGTTATGTAAGTTATGTAGGTAATGTATTATGTTAG
1 TAAGTCATGTAAGTTATTTAATTTATGTAAGTTATGTAAGTTATGTAGG--A-G-ACTA--TTAG
* * *
15876720 TTATTATGTTATTATATAAGTTATGCAAGTTTCTATATATGTTTATATATTGTATGTTATTTTAG
60 TTATTATGTTATTATATAAGTTATGCAAGTTTATATATAAGTTTATATATTGTATGTTATTTAAG
*
15876785 TTATGTATTATGTAAGTTTATATATAAGTTATGATATATATTATTGATAAATTTGAGTTATGTAA
125 TTATGTATTATGTAAGTTTATATATAAGTTATG--A-ATATGATTGATAAATTTGAGTTATGTAA
* * *
15876850 CTTATGACATGATTGATAAATTTTGAAAAAAATATAGATTTTAAAAATATATATATTAAAAATGT
187 CTTATGACAGGATCGATAAATTTTGAAAAAAAAATAGATTTTAAAAATATATATATTAAAAATGT
15876915 ATATAAATAT
252 ATATAAATAT
15876925 GTAAGTTATT
Statistics
Matches: 241, Mismatches: 10, Indels: 21
0.89 0.04 0.08
Matches are distributed among these distances:
256 46 0.19
257 1 0.00
261 1 0.00
263 2 0.01
266 1 0.00
267 1 0.00
268 94 0.39
271 16 0.07
272 51 0.21
273 28 0.12
ACGTcount: A:0.38, C:0.02, G:0.14, T:0.46
Consensus pattern (264 bp):
TAAGTCATGTAAGTTATTTAATTTATGTAAGTTATGTAAGTTATGTAGGAGACTATTAGTTATTA
TGTTATTATATAAGTTATGCAAGTTTATATATAAGTTTATATATTGTATGTTATTTAAGTTATGT
ATTATGTAAGTTTATATATAAGTTATGAATATGATTGATAAATTTGAGTTATGTAACTTATGACA
GGATCGATAAATTTTGAAAAAAAAATAGATTTTAAAAATATATATATTAAAAATGTATATAAATA
TTTA
Found at i:15876901 original size:17 final size:18
Alignment explanation
Indices: 15876869--15876902 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
15876859 TGATTGATAA
15876869 ATTTTGAAAAAAATATAG
1 ATTTTGAAAAAAATATAG
*
15876887 ATTTT-AAAAATATATA
1 ATTTTGAAAAAAATATA
15876903 TATTAAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (18 bp):
ATTTTGAAAAAAATATAG
Found at i:15876917 original size:15 final size:15
Alignment explanation
Indices: 15876877--15876919 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
15876867 AAATTTTGAA
* *
15876877 AAAAATATAGATTTT
1 AAAAATATATATATT
15876892 AAAAATATATATATT
1 AAAAATATATATATT
*
15876907 AAAAATGTATATA
1 AAAAATATATATA
15876920 AATATGTAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (15 bp):
AAAAATATATATATT
Found at i:15876953 original size:23 final size:23
Alignment explanation
Indices: 15876922--15876987 Score: 105
Period size: 23 Copynumber: 2.8 Consensus size: 23
15876912 TGTATATAAA
*
15876922 TATGTAAGTTATTATAAGTGAGT
1 TATGAAAGTTATTATAAGTGAGT
15876945 TATGAAAGTTATTATAAGTGAGT
1 TATGAAAGTTATTATAAGTGAGT
*
15876968 TATGAAAGTCATTTATAAGT
1 TATGAAAGTTA-TTATAAGT
15876988 TTATATATAA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
23 32 0.80
24 8 0.20
ACGTcount: A:0.38, C:0.02, G:0.20, T:0.41
Consensus pattern (23 bp):
TATGAAAGTTATTATAAGTGAGT
Found at i:15876998 original size:12 final size:12
Alignment explanation
Indices: 15876981--15877005 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15876971 GAAAGTCATT
15876981 TATAAGTTTATA
1 TATAAGTTTATA
15876993 TATAAGTTTATA
1 TATAAGTTTATA
15877005 T
1 T
15877006 TAAATTTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TATAAGTTTATA
Found at i:15877083 original size:43 final size:47
Alignment explanation
Indices: 15877002--15877090 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 47
15876992 ATATAAGTTT
*
15877002 ATATTAAATTTTAAAAGTATATATAAATTAAAATTTAAAATATATAC
1 ATATTAAAATTTAAAAGTATATATAAATTAAAATTTAAAATATATAC
* *
15877049 ATATTAAAATTT-AAAG-ATATATATA-T-AATTTTAAAATATATA
1 ATATTAAAATTTAAAAGTATATATAAATTAAAATTTAAAATATATA
15877091 TTAATAAGTT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
43 15 0.38
44 1 0.03
45 8 0.21
46 4 0.10
47 11 0.28
ACGTcount: A:0.55, C:0.01, G:0.02, T:0.42
Consensus pattern (47 bp):
ATATTAAAATTTAAAAGTATATATAAATTAAAATTTAAAATATATAC
Found at i:15878680 original size:13 final size:13
Alignment explanation
Indices: 15878662--15878686 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15878652 CTGAAACGAG
15878662 TTAGGGATTTCAC
1 TTAGGGATTTCAC
15878675 TTAGGGATTTCA
1 TTAGGGATTTCA
15878687 GATCAGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.40
Consensus pattern (13 bp):
TTAGGGATTTCAC
Found at i:15898536 original size:43 final size:42
Alignment explanation
Indices: 15898464--15898648 Score: 162
Period size: 43 Copynumber: 4.3 Consensus size: 42
15898454 ACGTCGCTAA
* *
15898464 CTTTTGCGGCGCTTACAGAAAAAAACGCCGCTAAAGATCATGTT
1 CTTTAGCGGCGC-TA-AGGAAAAAACGCCGCTAAAGATCATGTT
15898508 CTTTAGCGGCGCTAAGGAAATAAACGCCGCTAAAGATCATGTT
1 CTTTAGCGGCGCTAAGGAAA-AAACGCCGCTAAAGATCATGTT
* * * * *
15898551 ATTTAGCGGTGCTTAGGAAGAAAACACCGCTAAA-AGTAATGTT
1 CTTTAGCGGCGCTAAGGAA-AAAACGCCGCTAAAGA-TCATGTT
* * * * *
15898594 CTATAGCGGCACT-TGGTCAAAAATGCCGCTAAA-AGT-AGTGTT
1 CTTTAGCGGCGCTAAGG-AAAAAACGCCGCTAAAGA-TCA-TGTT
15898636 CTTTAGCGGCGCT
1 CTTTAGCGGCGCT
15898649 TATTTCACAA
Statistics
Matches: 119, Mismatches: 17, Indels: 12
0.80 0.11 0.08
Matches are distributed among these distances:
41 1 0.01
42 38 0.32
43 68 0.57
44 12 0.10
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.25
Consensus pattern (42 bp):
CTTTAGCGGCGCTAAGGAAAAAACGCCGCTAAAGATCATGTT
Found at i:15901510 original size:47 final size:47
Alignment explanation
Indices: 15901458--15902197 Score: 1207
Period size: 47 Copynumber: 15.6 Consensus size: 47
15901448 GATAATTGTG
* *
15901458 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
15901505 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
15901552 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
15901601 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
15901650 ATGTG--AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
15901695 ATGTGAAAGTGTATATATGTGATAAGGCCAAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
15901742 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
15901791 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
15901840 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
15901887 ATGTGAAAGT-TATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
15901933 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
15901982 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
15902031 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
15902078 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
15902125 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
15902172 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
15902198 TCCTGAAGGG
Statistics
Matches: 660, Mismatches: 24, Indels: 18
0.94 0.03 0.03
Matches are distributed among these distances:
45 41 0.06
46 44 0.07
47 297 0.45
49 278 0.42
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:15901565 original size:96 final size:94
Alignment explanation
Indices: 15901458--15902197 Score: 1207
Period size: 96 Copynumber: 7.8 Consensus size: 94
15901448 GATAATTGTG
* *
15901458 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
15901523 GTGATAAGGCCGAATGGCCGATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
15901552 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
15901617 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
62 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
15901650 ATGTG--AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
15901713 GTGATAAGGCCAAATGGCCGATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
15901742 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
15901807 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
62 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
15901840 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT-TATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
15901904 GTGATAAGGCCGAATGGCCAATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
15901933 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
15901998 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
62 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
15902031 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
15902096 GTGATGAGGCCTAATGGCCGATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * *
15902125 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
15902190 GTGATAAG
66 GTGATAAG
15902198 TCCTGAAGGG
Statistics
Matches: 610, Mismatches: 21, Indels: 30
0.92 0.03 0.05
Matches are distributed among these distances:
92 40 0.07
93 45 0.07
94 158 0.26
95 46 0.08
96 190 0.31
98 131 0.21
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (94 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:15909287 original size:25 final size:25
Alignment explanation
Indices: 15909256--15909496 Score: 127
Period size: 25 Copynumber: 9.2 Consensus size: 25
15909246 ATTTTTCTCA
15909256 ATGTAAGTTATGTATTAAGTAAATT
1 ATGTAAGTTATGTATTAAGTAAATT
*
15909281 ATGTAAGTTATGTA-TATAGTATAAAAGAT
1 ATGTAAGTTATGTATTA-AG--T-AAA-TT
* *
15909310 ATGTAAGTTATGTATTATGTAAGTT
1 ATGTAAGTTATGTATTAAGTAAATT
**
15909335 ATGTAAGTTATGTAGGTTATTA-TAAGCT
1 ATGTAAGTTATGTA--TTA--AGTAAATT
15909363 ATGTAAGTTATTATGTAAGTTAAGATATAATAT
1 ATGTAAG---TTATGT-A-TTAAG-TA-AAT-T
*
15909396 ATGT-TGATTATGTATTAAGTAAATT
1 ATGTAAG-TTATGTATTAAGTAAATT
* * * *
15909421 ATGTAAGTTATGGAGTATGTAAGTT
1 ATGTAAGTTATGTATTAAGTAAATT
* * *
15909446 ATATAAGCTATG---TAAGT-TATT
1 ATGTAAGTTATGTATTAAGTAAATT
* * *
15909467 ATGTAAGTAATGTATTAAATAAGTT
1 ATGTAAGTTATGTATTAAGTAAATT
15909492 ATGTA
1 ATGTA
15909497 TTTATTTAAG
Statistics
Matches: 168, Mismatches: 25, Indels: 46
0.70 0.10 0.19
Matches are distributed among these distances:
21 11 0.07
22 4 0.02
24 6 0.04
25 67 0.40
26 6 0.04
27 7 0.04
28 20 0.12
29 18 0.11
30 9 0.05
31 12 0.07
32 3 0.02
33 5 0.03
ACGTcount: A:0.38, C:0.01, G:0.18, T:0.43
Consensus pattern (25 bp):
ATGTAAGTTATGTATTAAGTAAATT
Found at i:15909291 original size:9 final size:9
Alignment explanation
Indices: 15909256--15909601 Score: 159
Period size: 9 Copynumber: 38.6 Consensus size: 9
15909246 ATTTTTCTCA
15909256 ATGTAAGTT
1 ATGTAAGTT
15909265 ATGT-A-TT
1 ATGTAAGTT
* *
15909272 AAGTAAATT
1 ATGTAAGTT
15909281 ATGTAAGTT
1 ATGTAAGTT
15909290 ATGTATA-TAGT
1 ATGTA-AGT--T
** *
15909301 ATAAAAGAT
1 ATGTAAGTT
15909310 ATGTAAGTT
1 ATGTAAGTT
15909319 ATGT-A-TT
1 ATGTAAGTT
15909326 ATGTAAGTT
1 ATGTAAGTT
15909335 ATGTAAGTT
1 ATGTAAGTT
*
15909344 ATGTAGGTT
1 ATGTAAGTT
* *
15909353 ATTATAAGCT
1 A-TGTAAGTT
15909363 ATGTAAGTTATT
1 ATGTAAG---TT
15909375 ATGTAAGTT
1 ATGTAAGTT
* *
15909384 AAGATATAATAT
1 ATG-TA-AGT-T
*
15909396 ATGT-TGATT
1 ATGTAAG-TT
15909405 ATGT-A-TT
1 ATGTAAGTT
* *
15909412 AAGTAAATT
1 ATGTAAGTT
15909421 ATGTAAGTT
1 ATGTAAGTT
*
15909430 ATG-GAG-T
1 ATGTAAGTT
15909437 ATGTAAGTT
1 ATGTAAGTT
* *
15909446 ATATAAGCT
1 ATGTAAGTT
15909455 ATGTAAGTTATT
1 ATGTAAG---TT
*
15909467 ATGTAAGTA
1 ATGTAAGTT
15909476 ATGT-A-TT
1 ATGTAAGTT
**
15909483 AAATAAGTT
1 ATGTAAGTT
*
15909492 ATGT-ATTT
1 ATGTAAGTT
*
15909500 ATTTAAGTT
1 ATGTAAGTT
15909509 ATGT-A-TT
1 ATGTAAGTT
15909516 ATGTAAGTT
1 ATGTAAGTT
* *
15909525 ATATAAGCT
1 ATGTAAGTT
*
15909534 ATGTACCATTT
1 ATGTA--AGTT
15909545 AT-TAAGTT
1 ATGTAAGTT
*
15909553 ATGTATG-T
1 ATGTAAGTT
* *
15909561 ATGTGACTT
1 ATGTAAGTT
*
15909570 TTGTAAGTT
1 ATGTAAGTT
*
15909579 ATGTGAGTT
1 ATGTAAGTT
*
15909588 ATGTAAATT
1 ATGTAAGTT
15909597 ATGTA
1 ATGTA
15909602 TTAAATTAAA
Statistics
Matches: 248, Mismatches: 57, Indels: 64
0.67 0.15 0.17
Matches are distributed among these distances:
7 29 0.12
8 29 0.12
9 147 0.59
10 13 0.05
11 11 0.04
12 19 0.08
ACGTcount: A:0.36, C:0.02, G:0.18, T:0.45
Consensus pattern (9 bp):
ATGTAAGTT
Found at i:15909365 original size:19 final size:19
Alignment explanation
Indices: 15909325--15909376 Score: 70
Period size: 19 Copynumber: 2.8 Consensus size: 19
15909315 AGTTATGTAT
* *
15909325 TATGTAAGTTA-TGTAAGT
1 TATGTAAGTTATTATAAGC
*
15909343 TATGTAGGTTATTATAAGC
1 TATGTAAGTTATTATAAGC
15909362 TATGTAAGTTATTAT
1 TATGTAAGTTATTAT
15909377 GTAAGTTAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
18 10 0.34
19 19 0.66
ACGTcount: A:0.33, C:0.02, G:0.19, T:0.46
Consensus pattern (19 bp):
TATGTAAGTTATTATAAGC
Found at i:15909490 original size:46 final size:46
Alignment explanation
Indices: 15909322--15909493 Score: 129
Period size: 46 Copynumber: 3.7 Consensus size: 46
15909312 GTAAGTTATG
* ** *
15909322 TATTATGTAAGTTATGTAAGTTATGTAGGTTATTATAAGCTATGTAAGT
1 TATTATGTAAGTAATGT-A-TTAAATAAGTTA-TATAAGCTATGTAAGT
* *
15909371 TATTATGTAAGTTAA-G-ATATAATATATGTTGAT-TATG-TAT-TAAGT
1 TATTATGTAAG-TAATGTAT-TAA-ATAAGTT-ATATAAGCTATGTAAGT
* * * * **
15909416 AAATTATGTAAGTTATGGAGTATGTAAGTTATATAAGCTATGTAAGT
1 -TATTATGTAAGTAATGTATTAAATAAGTTATATAAGCTATGTAAGT
15909463 TATTATGTAAGTAATGTATTAAATAAGTTAT
1 TATTATGTAAGTAATGTATTAAATAAGTTAT
15909494 GTATTTATTT
Statistics
Matches: 95, Mismatches: 18, Indels: 23
0.70 0.13 0.17
Matches are distributed among these distances:
44 2 0.02
45 15 0.16
46 45 0.47
47 12 0.13
48 6 0.06
49 13 0.14
50 2 0.02
ACGTcount: A:0.37, C:0.01, G:0.18, T:0.44
Consensus pattern (46 bp):
TATTATGTAAGTAATGTATTAAATAAGTTATATAAGCTATGTAAGT
Found at i:15909508 original size:17 final size:16
Alignment explanation
Indices: 15909309--15909526 Score: 109
Period size: 16 Copynumber: 13.8 Consensus size: 16
15909299 GTATAAAAGA
15909309 TATGTAAGTTATGTAT
1 TATGTAAGTTATGTAT
15909325 TATGTAAGTTATGTAAGT
1 TATGTAAGTTATGT-A-T
*
15909343 TATGTAGGTTAT-TA-
1 TATGTAAGTTATGTAT
* * *
15909357 TAAGCTATG-TAAGTTAT
1 TATG-TAAGTTATG-TAT
*
15909374 TATGTAAGTTAAGATAT
1 TATGTAAGTTATG-TAT
* * *
15909391 AATATATGTTGAT-TAT
1 TATGTAAGTT-ATGTAT
*
15909407 GTAT-TAAG-TA--AAT
1 -TATGTAAGTTATGTAT
* *
15909420 TATGTAAGTTATGGAG
1 TATGTAAGTTATGTAT
* *
15909436 TATGTAAGTTATATAAGC
1 TATGTAAGTTATGT-A-T
15909454 TATGTAAG---T-TAT
1 TATGTAAGTTATGTAT
*
15909466 TATGTAAGTAATGTAT
1 TATGTAAGTTATGTAT
**
15909482 TAAATAAGTTATGTATT
1 TATGTAAGTTATGTA-T
*
15909499 TATTTAAGTTATGTAT
1 TATGTAAGTTATGTAT
15909515 TATGTAAGTTAT
1 TATGTAAGTTAT
15909527 ATAAGCTATG
Statistics
Matches: 156, Mismatches: 26, Indels: 40
0.70 0.12 0.18
Matches are distributed among these distances:
12 11 0.07
13 7 0.04
14 9 0.06
15 6 0.04
16 66 0.42
17 36 0.23
18 21 0.13
ACGTcount: A:0.36, C:0.01, G:0.18, T:0.45
Consensus pattern (16 bp):
TATGTAAGTTATGTAT
Found at i:15909588 original size:79 final size:80
Alignment explanation
Indices: 15909414--15909601 Score: 193
Period size: 79 Copynumber: 2.4 Consensus size: 80
15909404 TATGTATTAA
* * **
15909414 GTAAATTATGTAAGTTATGGAGTATGTAAGTTATATAAGCTATGTAAGTTATTATGTAAGTAATG
1 GTAAATTATGTAAGTTATGTATTATGTAAGTTATATAAGCTATGTAACATATTATGTAAGTAATG
*
15909479 TATTAAATAAGTTAT
66 TATTAAATAACTTAT
* * * *
15909494 GT-ATTTATTTAAGTTATGTATTATGTAAGTTATATAAGCTATGTACCAT-TTAT-TAAGTTATG
1 GTAAATTATGTAAGTTATGTATTATGTAAGTTATATAAGCTATGTAACATATTATGTAAGTAATG
** * *
15909556 TATGTATGTGACTTTT
66 TAT-TAAATAACTTAT
* *
15909572 GTAAGTTATGTGAGTTATGTAAATTATGTA
1 GTAAATTATGTAAGTTATGT--ATTATGTA
15909602 TTAAATTAAA
Statistics
Matches: 88, Mismatches: 16, Indels: 7
0.79 0.14 0.06
Matches are distributed among these distances:
77 11 0.12
78 13 0.15
79 54 0.61
80 2 0.02
81 8 0.09
ACGTcount: A:0.34, C:0.03, G:0.18, T:0.45
Consensus pattern (80 bp):
GTAAATTATGTAAGTTATGTATTATGTAAGTTATATAAGCTATGTAACATATTATGTAAGTAATG
TATTAAATAACTTAT
Found at i:15911528 original size:173 final size:173
Alignment explanation
Indices: 15911239--15911681 Score: 771
Period size: 173 Copynumber: 2.6 Consensus size: 173
15911229 CGATTGTTGC
* *
15911239 GGCAGAGGAGACCGACGGAGGGAGACGGTGATGCGCCAGAGGAAACGGCAACGTTGCAAGAGGTC
1 GGCAGAGGAGACCGACGGAGGGAGACGGTGATGCGCCAAAGGAAACGGCAACGTTGCAAGAGGTT
* *
15911304 GGGTTTGGGGAAATGTGGATTAGGGGAAATTTCTCAATATTTCAGGGAGAAATAGATTTTGGGGA
66 AGGTTTGGGGAAATATGGATTAGGGGAAATTTCTCAATATTTCAGGGAGAAATAGATTTTGGGGA
*
15911369 TAAGTCACAATAGTTGGGGTTTAAGTTTCGGTTAAATGTATGG
131 TAAGTCACAATAGTTGGGGTTTAAGTTTCAGTTAAATGTATGG
15911412 GGCAGAGGAGACCGACGGAGGGAGACGGTGATGCGCCAAAGGAAACGGCAACGTTGCAAGAGGTT
1 GGCAGAGGAGACCGACGGAGGGAGACGGTGATGCGCCAAAGGAAACGGCAACGTTGCAAGAGGTT
* * *
15911477 AGGTTTAGAGAAATATGGATTAGGGGAAATTTCTCAATATTTCAGGGAGAAATGGATTTTGGGGA
66 AGGTTTGGGGAAATATGGATTAGGGGAAATTTCTCAATATTTCAGGGAGAAATAGATTTTGGGGA
15911542 TAAGTCACAATAGTTGGGGTTTAAGTTTCAGTTAAATGTATGG
131 TAAGTCACAATAGTTGGGGTTTAAGTTTCAGTTAAATGTATGG
*
15911585 AGCAGAGGAGACCGACGGAGGGAGACGGTGATGCGCCAAAGGAAACGGCAACGTTGCAAGAGG-T
1 GGCAGAGGAGACCGACGGAGGGAGACGGTGATGCGCCAAAGGAAACGGCAACGTTGCAAGAGGTT
* *
15911649 CGGCTTTGGGGAAATCTGGATTAGGGGAAATTT
66 AGG-TTTGGGGAAATATGGATTAGGGGAAATTT
15911682 AGGGATTTGG
Statistics
Matches: 256, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
172 3 0.01
173 253 0.99
ACGTcount: A:0.30, C:0.12, G:0.36, T:0.22
Consensus pattern (173 bp):
GGCAGAGGAGACCGACGGAGGGAGACGGTGATGCGCCAAAGGAAACGGCAACGTTGCAAGAGGTT
AGGTTTGGGGAAATATGGATTAGGGGAAATTTCTCAATATTTCAGGGAGAAATAGATTTTGGGGA
TAAGTCACAATAGTTGGGGTTTAAGTTTCAGTTAAATGTATGG
Found at i:15912350 original size:261 final size:261
Alignment explanation
Indices: 15911886--15912416 Score: 945
Period size: 261 Copynumber: 2.0 Consensus size: 261
15911876 AGAGTAAAAA
* * *
15911886 CGCCACTAATAACACGGACAAAACGACATCGTTATAAGATAACATTAAACATTTTTGTGGCGCTT
1 CGCCACTAATAACACGGACAAAACGACACCGCTATAAGATAACATTAAACATTTTTGCGGCGCTT
* * * *
15911951 TAGCTAAAGGGCCACTAATAAAAATAGGAAACGGTGCCGTTTCCTCAGCTCGTAATAAATATTTG
66 TAGCTAAAGCGCCACTAATAAAAATAGGAAACGGCGCCATTTCCTCAGCTCGTAATAAATATTTA
15912016 TGGCGTTTTTAAAATGCGCCACTAAAAGAAAACAACAAAACGGCACCGTCTTCGTTACAGTTAAA
131 TGGCGTTTTTAAAATGCGCCACTAAAAGAAAACAACAAAACGGCACCGTCTTCGTTACAGTTAAA
*
15912081 GGAAATTTGTGGCTTTTCTTCGTAAAACACCAGTAATATATCACCTTTAGCGGCGTTTTTCAAAT
196 GGAAATTTGTGGCGTTTCTTCGTAAAACACCAGTAATATATCACCTTTAGCGGCGTTTTTCAAAT
15912146 G
261 G
*
15912147 CGCCACTAATAACACGGACAAAACGGCACCGCTATAAGATAACATTAAACATTTTTGCGGCGCTT
1 CGCCACTAATAACACGGACAAAACGACACCGCTATAAGATAACATTAAACATTTTTGCGGCGCTT
15912212 TAGCTAAAGCGCCACTAATAAAAATAGGAAACGGCGCCATTTCCTCAGCTCGTAATAAATATTTA
66 TAGCTAAAGCGCCACTAATAAAAATAGGAAACGGCGCCATTTCCTCAGCTCGTAATAAATATTTA
*
15912277 TGGCGTTTTTAAAATGCGCCACTAAAAGAAAACAACAAAACGGCACCGTCTTTGTTACAGTTAAA
131 TGGCGTTTTTAAAATGCGCCACTAAAAGAAAACAACAAAACGGCACCGTCTTCGTTACAGTTAAA
* * *
15912342 GGAAATTTGTGGCGTTTCTTCGTAAAACGCCGGTAATATATCACTTTTAGCGGCGTTTTTCAAAT
196 GGAAATTTGTGGCGTTTCTTCGTAAAACACCAGTAATATATCACCTTTAGCGGCGTTTTTCAAAT
15912407 G
261 G
15912408 CGCCACTAA
1 CGCCACTAA
15912417 AAGAAAACAA
Statistics
Matches: 257, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
261 257 1.00
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (261 bp):
CGCCACTAATAACACGGACAAAACGACACCGCTATAAGATAACATTAAACATTTTTGCGGCGCTT
TAGCTAAAGCGCCACTAATAAAAATAGGAAACGGCGCCATTTCCTCAGCTCGTAATAAATATTTA
TGGCGTTTTTAAAATGCGCCACTAAAAGAAAACAACAAAACGGCACCGTCTTCGTTACAGTTAAA
GGAAATTTGTGGCGTTTCTTCGTAAAACACCAGTAATATATCACCTTTAGCGGCGTTTTTCAAAT
G
Found at i:15912516 original size:117 final size:115
Alignment explanation
Indices: 15912278--15912517 Score: 417
Period size: 115 Copynumber: 2.1 Consensus size: 115
15912268 AAATATTTAT
15912278 GGCGTTTTTAAAATGCGCCACTAAAAGAAAACAACAAAACGGCACCGTCTTTGTTACAGTTAAAG
1 GGCGTTTTTAAAATGCGCCACTAAAAGAAAACAACAAAACGGCACCGTCTTTGTTACAGTTAAAG
* ** *
15912343 GAAATTTGTGGCGTTTCTTCGTAAAACGCCGGTAATATATCACTTTTAGC
66 GAAATTTGCGGCGTTTCTTCACAAAACGCCGGTAATATATCACCTTTAGC
*
15912393 GGCGTTTTTCAAATGCGCCACTAAAAGAAAACAACAAAACGGCACCGTCTTTGTTACAGTTAAAA
1 GGCGTTTTTAAAATGCGCCACTAAAAGAAAACAACAAAACGGCACCGTCTTTGTTACAGTT--AA
15912458 AGGAAATTTGCGGCGTTTCTTCACAAAACGCCGGTAATATATCACCTTTAGC
64 AGGAAATTTGCGGCGTTTCTTCACAAAACGCCGGTAATATATCACCTTTAGC
15912510 GGCGTTTT
1 GGCGTTTT
15912518 CTCTGAAGCG
Statistics
Matches: 118, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
115 60 0.51
117 58 0.49
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (115 bp):
GGCGTTTTTAAAATGCGCCACTAAAAGAAAACAACAAAACGGCACCGTCTTTGTTACAGTTAAAG
GAAATTTGCGGCGTTTCTTCACAAAACGCCGGTAATATATCACCTTTAGC
Found at i:15913006 original size:14 final size:13
Alignment explanation
Indices: 15912974--15913040 Score: 55
Period size: 14 Copynumber: 4.8 Consensus size: 13
15912964 TCATAAATCT
*
15912974 TAAATCCTAAACCC
1 TAAA-CCTAAACTC
*
15912988 CAAACCTAAAACTC
1 TAAACCT-AAACTC
15913002 TAAACTCTAAAC-C
1 TAAAC-CTAAACTC
*
15913015 GTAAACCCTAAACTG
1 -TAAA-CCTAAACTC
15913030 TAAACCTAAAC
1 TAAACCTAAAC
15913041 AATATTTTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
13 11 0.25
14 30 0.68
15 3 0.07
ACGTcount: A:0.46, C:0.31, G:0.03, T:0.19
Consensus pattern (13 bp):
TAAACCTAAACTC
Found at i:15913013 original size:21 final size:21
Alignment explanation
Indices: 15912979--15913039 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
15912969 AATCTTAAAT
* *
15912979 CCTAAACCCCAAACCTAAAAC
1 CCTAAACTCTAAACCTAAAAC
*
15913000 TCTAAACTCTAAACCGT-AAAC
1 CCTAAACTCTAAACC-TAAAAC
*
15913021 CCTAAACTGTAAACCTAAA
1 CCTAAACTCTAAACCTAAA
15913040 CAATATTTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
20 1 0.03
21 31 0.94
22 1 0.03
ACGTcount: A:0.46, C:0.33, G:0.03, T:0.18
Consensus pattern (21 bp):
CCTAAACTCTAAACCTAAAAC
Found at i:15913209 original size:20 final size:21
Alignment explanation
Indices: 15913171--15913220 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
15913161 TCTTCAATTT
15913171 CCAAACT-AAACCCTAAAACC
1 CCAAACTCAAACCCTAAAACC
* *
15913191 CTAAACTCAAA-CCTTAAACC
1 CCAAACTCAAACCCTAAAACC
15913211 CCAAACTCAA
1 CCAAACTCAA
15913221 TCTCTAACAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 23 0.88
21 3 0.12
ACGTcount: A:0.48, C:0.38, G:0.00, T:0.14
Consensus pattern (21 bp):
CCAAACTCAAACCCTAAAACC
Found at i:15914086 original size:73 final size:72
Alignment explanation
Indices: 15914007--15914141 Score: 182
Period size: 72 Copynumber: 1.9 Consensus size: 72
15913997 TCGTCAAAGC
* * * *
15914007 GCCGCTAATTCCACGAAAACTGA-GAAAACGACACCGTTTGGCTTAGGTTTTTTAGCGGCGCTTC
1 GCCGCTAAATCC-CAAAAACT-ACGAAAACGACACCGTTTGGCTTAGGATTGTTAGCGGCGCTTC
15914071 CCCAAAAAT
64 CCCAAAAAT
* * *
15914080 GCCGCTAAATCCCAAAAACTACGGAAACGGCACCGTTTGGCTTAGGATTGTTAGTGGCGCTT
1 GCCGCTAAATCCCAAAAACTACGAAAACGACACCGTTTGGCTTAGGATTGTTAGCGGCGCTT
15914142 GATTAAAAAC
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
71 1 0.02
72 42 0.78
73 11 0.20
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.24
Consensus pattern (72 bp):
GCCGCTAAATCCCAAAAACTACGAAAACGACACCGTTTGGCTTAGGATTGTTAGCGGCGCTTCCC
CAAAAAT
Found at i:15914150 original size:72 final size:72
Alignment explanation
Indices: 15914006--15914182 Score: 178
Period size: 72 Copynumber: 2.4 Consensus size: 72
15913996 TTCGTCAAAG
* * * * * *
15914006 CGCCGCTAATTCCACGAAAACT-GAGAAAACGACACCGTTTGGCTTAGGTTTTTTAGCGGCGCTT
1 CGCCGCTAAATCCCCAAAAACTCG-G-AAACGGCACCGTTTGGCTTAGGATTGTTAGCGGCGCTT
*
15914070 CCCCAAAAA
64 CACCAAAAA
* * *
15914079 TGCCGCTAAAT-CCCAAAAACTACGGAAACGGCACCGTTTGGCTTAGGATTGTTAGTGGCGCTTG
1 CGCCGCTAAATCCCCAAAAACT-CGGAAACGGCACCGTTTGGCTTAGGATTGTTAGCGGCGCTTC
**
15914143 ATTAAAAA
65 ACCAAAAA
** *
15914151 CGTTGCTAAATCCCCAAAATCTCGGAAACGGC
1 CGCCGCTAAATCCCCAAAAACTCGGAAACGGC
15914183 GTCGTTGGGC
Statistics
Matches: 85, Mismatches: 16, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
72 65 0.76
73 19 0.22
74 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.23
Consensus pattern (72 bp):
CGCCGCTAAATCCCCAAAAACTCGGAAACGGCACCGTTTGGCTTAGGATTGTTAGCGGCGCTTCA
CCAAAAA
Found at i:15917290 original size:25 final size:25
Alignment explanation
Indices: 15917253--15917309 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
15917243 TCTATGGCGC
*
15917253 CCCAAACCCGGTCGGGGCGGTCCGA
1 CCCAAACCCGGTCGGGGCAGTCCGA
* * *
15917278 CCCAAACCTGGTCGTGGTAGTCCGA
1 CCCAAACCCGGTCGGGGCAGTCCGA
15917303 CCCAAAC
1 CCCAAAC
15917310 ACGAAACGAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.21, C:0.39, G:0.28, T:0.12
Consensus pattern (25 bp):
CCCAAACCCGGTCGGGGCAGTCCGA
Found at i:15917568 original size:18 final size:18
Alignment explanation
Indices: 15917545--15917579 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
15917535 GTAATTGAAC
15917545 ATATATGAAA-ATGTGTAT
1 ATATAT-AAATATGTGTAT
15917563 ATATATAAATATGTGTA
1 ATATATAAATATGTGTA
15917580 ATTGAATGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.46, C:0.00, G:0.14, T:0.40
Consensus pattern (18 bp):
ATATATAAATATGTGTAT
Found at i:15920288 original size:22 final size:22
Alignment explanation
Indices: 15920248--15920289 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
15920238 ATTTGTTTCA
*
15920248 TTTTTTCGAAAACTGTTTTAAT
1 TTTTTTCGAAAACTATTTTAAT
* *
15920270 TTTTTTCGAATATTATTTTA
1 TTTTTTCGAAAACTATTTTA
15920290 GTAAAATTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.26, C:0.07, G:0.07, T:0.60
Consensus pattern (22 bp):
TTTTTTCGAAAACTATTTTAAT
Found at i:15924985 original size:8 final size:9
Alignment explanation
Indices: 15924954--15925025 Score: 56
Period size: 9 Copynumber: 7.7 Consensus size: 9
15924944 CTAGTTCAAG
*
15924954 TTTTTATGA
1 TTTTTATAA
**
15924963 TTTTTATGTT
1 TTTTTAT-AA
15924973 TTTTTATAA
1 TTTTTATAA
15924982 TTTTTATAA
1 TTTTTATAA
15924991 TTTTATATCAA
1 TTTT-TAT-AA
*
15925002 TTTTAAT-A
1 TTTTTATAA
*
15925010 TTTTTAATAC
1 TTTTT-ATAA
15925020 TTTTTA
1 TTTTTA
15925026 AAGAATTCTA
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
8 5 0.10
9 23 0.45
10 17 0.33
11 6 0.12
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (9 bp):
TTTTTATAA
Done.