Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 57 of 196
Found at i:15924994 original size:19 final size:18
Alignment explanation
Indices: 15924954--15925025 Score: 63
Period size: 19 Copynumber: 3.8 Consensus size: 18
15924944 CTAGTTCAAG
* *
15924954 TTTTTATGATTTTTATGTT
1 TTTTTATAATTTTTAT-AT
15924973 TTTTTATAATTTTTATAAT
1 TTTTTATAATTTTTAT-AT
* *
15924992 TTTATATCAATTTTAATAT
1 TTTTTAT-AATTTTTATAT
* *
15925011 TTTTAATACTTTTTA
1 TTTTTATAATTTTTA
15925026 AAGAATTCTA
Statistics
Matches: 43, Mismatches: 9, Indels: 3
0.78 0.16 0.05
Matches are distributed among these distances:
18 6 0.14
19 29 0.67
20 8 0.19
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (18 bp):
TTTTTATAATTTTTATAT
Found at i:15925003 original size:20 final size:19
Alignment explanation
Indices: 15924962--15925025 Score: 67
Period size: 19 Copynumber: 3.4 Consensus size: 19
15924952 AGTTTTTATG
* *
15924962 ATTTTTATGTTTTTTTATA
1 ATTTTTATATTTTTATATA
*
15924981 ATTTTTATAATTTTATATCA
1 ATTTTTATATTTTTATAT-A
*
15925001 ATTTTAATATTTTTA-ATA
1 ATTTTTATATTTTTATATA
*
15925019 CTTTTTA
1 ATTTTTA
15925026 AAGAATTCTA
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
18 6 0.16
19 17 0.46
20 14 0.38
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.66
Consensus pattern (19 bp):
ATTTTTATATTTTTATATA
Found at i:15925122 original size:8 final size:8
Alignment explanation
Indices: 15925092--15925230 Score: 50
Period size: 8 Copynumber: 16.1 Consensus size: 8
15925082 ATAAAAAAAA
15925092 TTATAATTT
1 TTAT-ATTT
*
15925101 ATTAGATTT
1 -TTATATTT
*
15925110 CTATATTT
1 TTATATTT
*
15925118 TTATAATAT
1 TTAT-ATTT
15925127 TTATAAGTTT
1 TTAT-A-TTT
15925137 TTATATTT
1 TTATATTT
15925145 TTATAATTT
1 TTAT-ATTT
*
15925154 TAATAAGTTT
1 TTAT-A-TTT
*
15925164 ATATTAATTT
1 TTA-T-ATTT
*
15925174 TAATATTT
1 TTATATTT
* *
15925182 TAATTTTTT
1 TTA-TATTT
**
15925191 TTATAACT
1 TTATATTT
15925199 TT-T-TTT
1 TTATATTT
15925205 TTAT-TTT
1 TTATATTT
15925212 TTAATAATTT
1 TT-AT-ATTT
15925222 TTATATTT
1 TTATATTT
15925230 T
1 T
15925231 AGTTAACGTC
Statistics
Matches: 101, Mismatches: 18, Indels: 22
0.72 0.13 0.16
Matches are distributed among these distances:
6 3 0.03
7 7 0.07
8 34 0.34
9 32 0.32
10 22 0.22
11 3 0.03
ACGTcount: A:0.31, C:0.01, G:0.02, T:0.65
Consensus pattern (8 bp):
TTATATTT
Found at i:15925144 original size:27 final size:27
Alignment explanation
Indices: 15925097--15925163 Score: 91
Period size: 27 Copynumber: 2.4 Consensus size: 27
15925087 AAAAATTATA
*
15925097 ATTTATTAGATTTCTATATTTTTATAAT
1 ATTTATAAG-TTTCTATATTTTTATAAT
*
15925125 ATTTATAAGTTTTTATATTTTTATAAT
1 ATTTATAAGTTTCTATATTTTTATAAT
15925152 -TTTAATAAGTTT
1 ATTT-ATAAGTTT
15925164 ATATTAATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
26 3 0.08
27 25 0.69
28 8 0.22
ACGTcount: A:0.33, C:0.01, G:0.04, T:0.61
Consensus pattern (27 bp):
ATTTATAAGTTTCTATATTTTTATAAT
Found at i:15925147 original size:18 final size:18
Alignment explanation
Indices: 15925114--15925189 Score: 63
Period size: 18 Copynumber: 4.3 Consensus size: 18
15925104 AGATTTCTAT
15925114 ATTTTTATAATATTTATA
1 ATTTTTATAATATTTATA
*
15925132 AGTTTTTAT-ATTTTTATA
1 A-TTTTTATAATATTTATA
* *
15925150 ATTTTAATAA-GTTTAT-
1 ATTTTTATAATATTTATA
15925166 ATTAATTT-TAATATTT-TA
1 ATT--TTTATAATATTTATA
15925184 ATTTTT
1 ATTTTT
15925190 TTTATAACTT
Statistics
Matches: 47, Mismatches: 5, Indels: 14
0.71 0.08 0.21
Matches are distributed among these distances:
16 6 0.13
17 15 0.32
18 19 0.40
19 7 0.15
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (18 bp):
ATTTTTATAATATTTATA
Found at i:15925166 original size:35 final size:35
Alignment explanation
Indices: 15925092--15925159 Score: 84
Period size: 35 Copynumber: 1.9 Consensus size: 35
15925082 ATAAAAAAAA
*
15925092 TTATAATTTATTAGATTTCTATATTTTTATAATAT
1 TTATAATTTATTAGATTTCTATATTTTAATAATAT
* *
15925127 TTATAAGTTT-TTATATTTTTATAATTTTAATAA
1 TTATAA-TTTATTAGATTTCTAT-ATTTTAATAA
15925160 GTTTATATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
35 16 0.57
36 12 0.43
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.60
Consensus pattern (35 bp):
TTATAATTTATTAGATTTCTATATTTTAATAATAT
Found at i:15926344 original size:42 final size:42
Alignment explanation
Indices: 15926287--15926373 Score: 165
Period size: 42 Copynumber: 2.1 Consensus size: 42
15926277 TAGGCAGAAA
15926287 ATATATATATATAATTGAAAGTAAATCTAAAGCAAATCGGAT
1 ATATATATATATAATTGAAAGTAAATCTAAAGCAAATCGGAT
*
15926329 ATATATATATATAATTGAAAGTAACTCTAAAGCAAATCGGAT
1 ATATATATATATAATTGAAAGTAAATCTAAAGCAAATCGGAT
15926371 ATA
1 ATA
15926374 AATAACAGGA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.49, C:0.08, G:0.11, T:0.31
Consensus pattern (42 bp):
ATATATATATATAATTGAAAGTAAATCTAAAGCAAATCGGAT
Found at i:15937700 original size:40 final size:40
Alignment explanation
Indices: 15937656--15937746 Score: 164
Period size: 40 Copynumber: 2.3 Consensus size: 40
15937646 AATGGAAAAA
15937656 GGAGTAAATGGAAGAGCCAAGATGGTATTGAATGAGGATT
1 GGAGTAAATGGAAGAGCCAAGATGGTATTGAATGAGGATT
15937696 GGAGTAAATGGAAGAGCCAAGATGGTATTGAATGAGGATT
1 GGAGTAAATGGAAGAGCCAAGATGGTATTGAATGAGGATT
* *
15937736 GAAGTCAATGG
1 GGAGTAAATGG
15937747 TGAAGTTTAG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.37, C:0.05, G:0.35, T:0.22
Consensus pattern (40 bp):
GGAGTAAATGGAAGAGCCAAGATGGTATTGAATGAGGATT
Found at i:15943036 original size:30 final size:30
Alignment explanation
Indices: 15943000--15943060 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
15942990 ATTGAGGCAA
**
15943000 AAGAAAATCAAGATTCAAAATCTTGGTTTC
1 AAGAAAATCAAGAAACAAAATCTTGGTTTC
* *
15943030 AAGAAAATTACGAAACAAAATCTTGGTTTC
1 AAGAAAATCAAGAAACAAAATCTTGGTTTC
15943060 A
1 A
15943061 TACAAACTCA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.46, C:0.13, G:0.13, T:0.28
Consensus pattern (30 bp):
AAGAAAATCAAGAAACAAAATCTTGGTTTC
Found at i:15953386 original size:27 final size:26
Alignment explanation
Indices: 15953300--15953396 Score: 126
Period size: 25 Copynumber: 3.8 Consensus size: 26
15953290 TCCTGTACAT
*
15953300 GTATGCTCACACGAGCTGTG-AATTG
1 GTATGCTCACACGAGCTGTGAAAATG
*
15953325 GTATGCTCACACGAGCTGT-AAACTG
1 GTATGCTCACACGAGCTGTGAAAATG
*
15953350 GTATGCTCACATGAGCTGTGAAAATGG
1 GTATGCTCACACGAGCTGTGAAAAT-G
* *
15953377 GTCTGCTCACACGAGTTGTG
1 GTATGCTCACACGAGCTGTG
15953397 GGTCAGAACA
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
25 41 0.65
26 4 0.06
27 18 0.29
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (26 bp):
GTATGCTCACACGAGCTGTGAAAATG
Found at i:15954926 original size:54 final size:54
Alignment explanation
Indices: 15954839--15954954 Score: 133
Period size: 54 Copynumber: 2.1 Consensus size: 54
15954829 TCAAGTTAGT
* * * * * * * *
15954839 GAGTTACATGGCCTAGTACATGGCTTGGCACACGGGTGTGTGTGGCAACTCAAA
1 GAGTTACACGACCTAGCACACGGCCTGGAACACGGGCGTGTGGGGCAACTCAAA
* **
15954893 GAGTTACACGACCTAGCACACGGCCTGGAACACGGGCGTGTGGGGCTACTCAGT
1 GAGTTACACGACCTAGCACACGGCCTGGAACACGGGCGTGTGGGGCAACTCAAA
15954947 GAGTTACA
1 GAGTTACA
15954955 TGGGTGAGGA
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.24, C:0.23, G:0.32, T:0.21
Consensus pattern (54 bp):
GAGTTACACGACCTAGCACACGGCCTGGAACACGGGCGTGTGGGGCAACTCAAA
Found at i:15957159 original size:23 final size:22
Alignment explanation
Indices: 15957133--15957175 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
15957123 TCGATTTCTT
15957133 TTCCTATCTTTT-TGTGAAAAAAA
1 TTCCTAT-TTTTCTG-GAAAAAAA
15957156 TTCCTATTTTTCTGGAAAAA
1 TTCCTATTTTTCTGGAAAAA
15957176 TACCATGTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.33, C:0.14, G:0.09, T:0.44
Consensus pattern (22 bp):
TTCCTATTTTTCTGGAAAAAAA
Found at i:15961248 original size:40 final size:39
Alignment explanation
Indices: 15961211--15961433 Score: 256
Period size: 40 Copynumber: 5.6 Consensus size: 39
15961201 GCTACTCGTT
* *
15961211 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCA
* *
15961251 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
*
15961291 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
*
15961330 C-AATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
* * * * *
15961368 CAAATGCCTTCGGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGAAT-TAGTAAC-TCGCA
15961409 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
15961434 CATCATTCAA
Statistics
Matches: 163, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
38 38 0.23
39 36 0.22
40 79 0.48
41 10 0.06
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
Found at i:15961420 original size:117 final size:119
Alignment explanation
Indices: 15961213--15961433 Score: 299
Period size: 117 Copynumber: 1.9 Consensus size: 119
15961203 TACTCGTTCA
*
15961213 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
15961278 TTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCAC
66 ATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCAC
* * **
15961331 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
15961393 ATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 ATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAGCCCGGA
15961434 CATCATTCAA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
116 4 0.04
117 55 0.61
118 31 0.34
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCAC
Found at i:15965788 original size:39 final size:37
Alignment explanation
Indices: 15965726--15965893 Score: 185
Period size: 39 Copynumber: 4.4 Consensus size: 37
15965716 GCTACTCGTT
* *
15965726 CAAATGCCTTCGGGAATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTC-GGATTAACCCGGTT-TAGTAACTCGCA
15965765 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGA-TTAACCCGG-TTTAGTAACTCGCA
* * * *
15965804 CAAATGCCTTCGGCTT-AGCCGGATTAGTATCTCGCA
1 CAAATGCCTTCGGATTAACCCGGTTTAGTAACTCGCA
* * * *
15965840 CAAACGCCTTCGGGATTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTC-GGATTAACCCGG-TTTAGTAACTCGCA
15965879 CAAATGCCTTCGGAT
1 CAAATGCCTTCGGAT
15965894 CTCTAGTCCG
Statistics
Matches: 113, Mismatches: 11, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
36 22 0.19
37 9 0.08
38 13 0.12
39 67 0.59
40 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (37 bp):
CAAATGCCTTCGGATTAACCCGGTTTAGTAACTCGCA
Found at i:15965863 original size:75 final size:76
Alignment explanation
Indices: 15965726--15965945 Score: 241
Period size: 75 Copynumber: 2.8 Consensus size: 76
15965716 GCTACTCGTT
** * *
15965726 CAAATGCCTTCGGGAATAGCCCGGTTATAGTAACTCGCACAAATGCCTTC-GGACTTAACCCGGA
1 CAAATGCCTTC-GGCTTAGCCCGGATATAGT-ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGA
*
15965790 TTTAGTAACTCGCA
63 ATTAGTAACTCGCA
15965804 CAAATGCCTTCGGCTTAG-CCGGAT-TAGTATCTCGCACAAACGCCTTCGGGA-TTAGCCCGGAA
1 CAAATGCCTTCGGCTTAGCCCGGATATAGTA-CTCGCACAAA-GCCTTCGGGACTTAGCCCGGAA
*
15965866 TTAGTATCTCGCA
64 TTAGTAACTCGCA
* * *
15965879 CAAATGCCTTCGGATCTCTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG--CT-TAGCCCGGATATAGT-AC-TCGCACAAAGCCTTCGGGACTTAGCCCG
15965944 GA
61 GA
15965946 CATCATTCAA
Statistics
Matches: 123, Mismatches: 9, Indels: 17
0.83 0.06 0.11
Matches are distributed among these distances:
74 1 0.01
75 54 0.44
76 8 0.07
77 7 0.06
78 14 0.11
79 6 0.05
80 14 0.11
81 19 0.15
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (76 bp):
CAAATGCCTTCGGCTTAGCCCGGATATAGTACTCGCACAAAGCCTTCGGGACTTAGCCCGGAATT
AGTAACTCGCA
Found at i:15970236 original size:77 final size:79
Alignment explanation
Indices: 15970095--15970317 Score: 242
Period size: 77 Copynumber: 2.8 Consensus size: 79
15970085 TTTGATGATG
* * * *
15970095 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTATAACCGGGCTAAG-TCCCGAAGGCA
*
15970157 TTTGTGCGAGATACTAAT
62 TTTGTGCGAGATACTAAA
* **
15970175 TCCGGGCTAAG-CCGAAGGTATTTGTGCGAGATACTA-ATTCGCGGCTAAG-CCCGAAGGCATTT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTATAACCG-GGCTAAGTCCCGAAGGCATTT
*
15970237 GTGCGAGTTACTAAA
65 GTGCGAGATACTAAA
* * *
15970252 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
15970317 G
65 G
15970318 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 13, Indels: 16
0.81 0.09 0.11
Matches are distributed among these distances:
77 39 0.32
78 16 0.13
79 38 0.31
80 29 0.24
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:15970324 original size:40 final size:40
Alignment explanation
Indices: 15970095--15970317 Score: 253
Period size: 40 Copynumber: 5.7 Consensus size: 40
15970085 TTTGATGATG
* * * *
15970095 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
15970135 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
15970175 TCCGGGCTAAG--CCGAAGGTATTTGTGCGAGATACT-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
15970212 TTCGCGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCG-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
15970252 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
15970293 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
15970318 AACGAGTAGC
Statistics
Matches: 159, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
37 4 0.03
38 30 0.19
39 28 0.18
40 87 0.55
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:15983532 original size:77 final size:79
Alignment explanation
Indices: 15983436--15983616 Score: 217
Period size: 77 Copynumber: 2.3 Consensus size: 79
15983426 TGAATGATGT
*
15983436 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAAT-CCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTGA-CAAATCCGGACTAAATCCCGAAGGCATTT
*
15983499 GTGCGAGATACTA-AT
64 GTGCGAGATACTATAA
* * * * ** *
15983514 TCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTATAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACAAATCCGGACTAAATCCCGAAGGCATTTGT
*
15983578 GCGAGTTACTATAA
66 GCGAGATACTATAA
*
15983592 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
15983617 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
76 11 0.13
77 37 0.43
78 25 0.29
79 14 0.16
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACAAATCCGGACTAAATCCCGAAGGCATTTGT
GCGAGATACTATAA
Found at i:15983578 original size:39 final size:40
Alignment explanation
Indices: 15983435--15983616 Score: 214
Period size: 40 Copynumber: 4.7 Consensus size: 40
15983425 TTGAATGATG
* * * *
15983435 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
15983475 TCCGGACTAAAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
15983513 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTA-TAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
15983551 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
15983592 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
15983617 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
37 1 0.01
38 41 0.34
39 35 0.29
40 42 0.35
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:15983638 original size:79 final size:77
Alignment explanation
Indices: 15983482--15983649 Score: 198
Period size: 79 Copynumber: 2.2 Consensus size: 77
15983472 ATATCCGGAC
** **
15983482 TAAAT-CCGAAGGCATTTGTGCGAGATACTAATTCGGGCTAAGCCCGAAGGCATTTGTGCGAGTT
1 TAAATCCCGAAGGCATTTGTGCGAGATACTAAACCGGGCTAAGCCCGAAGGCATTTGAACGAGTT
15983546 ATAAATCCGGGT
66 ATAAATCCGGGT
* * *
15983558 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAATCCCGAAGGCATTTGTGCGAGATACTA-AACCGGGCTAAG-CCCGAAGGCATTTGAACGAG
*
15983623 -TAGCTATATCC-GGT
64 TTA--TAAATCCGGGT
*
15983637 TAAATTCCGAAGG
1 TAAATCCCGAAGG
15983650 TACGTGATTT
Statistics
Matches: 77, Mismatches: 10, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
76 4 0.05
77 24 0.31
78 11 0.14
79 32 0.42
80 6 0.08
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (77 bp):
TAAATCCCGAAGGCATTTGTGCGAGATACTAAACCGGGCTAAGCCCGAAGGCATTTGAACGAGTT
ATAAATCCGGGT
Found at i:15988926 original size:40 final size:38
Alignment explanation
Indices: 15988842--15989063 Score: 268
Period size: 40 Copynumber: 5.7 Consensus size: 38
15988832 TTGAATGATG
* * *
15988842 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTA-A
* * *
15988882 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAA
15988921 TTCCGGGCTAAGCCCGAAGGCATTTGTGCGAG-TACTAA
1 -TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
15988959 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACT-AA
*
15988998 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-A
* *
15989038 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
15989064 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
37 31 0.19
38 10 0.06
39 33 0.20
40 82 0.50
41 7 0.04
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (38 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:15996924 original size:39 final size:40
Alignment explanation
Indices: 15996825--15997046 Score: 262
Period size: 40 Copynumber: 5.6 Consensus size: 40
15996815 TGAATGATGT
* *
15996825 CGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT-TC
*
15996865 CGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAATTC
15996905 CGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTC
* *
15996944 CGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTC
* *
15996983 CGGG-TCAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAAC
1 CGGGCT-AAGTCCCGAAGGCATTTGTGCGAGATACTAAT-TC
*
15997023 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
15997047 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 9, Indels: 18
0.86 0.05 0.09
Matches are distributed among these distances:
38 1 0.01
39 74 0.45
40 75 0.46
41 13 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTC
Found at i:15997010 original size:79 final size:79
Alignment explanation
Indices: 15996825--15997046 Score: 258
Period size: 79 Copynumber: 2.8 Consensus size: 79
15996815 TGAATGATGT
* * * *
15996825 CGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTATAACCGGGCTAAG-TCCCGAAGGCATT
*
15996887 TGTGCGAGATACTAATTC
62 TGTGCGAGATACTAAATC
*
15996905 CGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATTTGT
1 CGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTATA-ACCGGGCTAAGTCCCGAAGGCATTTGT
*
15996968 GCGAGTTACTAAATC
65 GCGAGATACTAAATC
* *
15996983 CGGG-TCAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 CGGGCT-AAG-CCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTTG
15997047 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 8, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
77 1 0.01
78 35 0.28
79 56 0.44
80 33 0.26
81 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
CGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTTGTG
CGAGATACTAAATC
Found at i:15997077 original size:79 final size:79
Alignment explanation
Indices: 15996876--15997079 Score: 218
Period size: 79 Copynumber: 2.6 Consensus size: 79
15996866 GGACTAAGAT
** * * * *
15996876 CCGAAGGCATTTGTGCGAGATACTAATTCCGGG-CTAAGCCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTCAAATCCCGAAGGCATTTGTGCGAGATACTA
*
15996940 ATTCCGGGCTAAGC
66 ATACCGGGCTAAGC
** * *
15996954 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTCAAGTCCCGAAGGCATTTGTGCGAGTTACT-
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTCAAATCCCGAAGGCATTTGTGCGAGATACTA
*
15997018 ATAACCGGGCTATGTC
66 AT-ACCGGGCTAAG-C
* * *
15997034 CCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTCAAATCCCGAAGG
15997080 TACGTGATTT
Statistics
Matches: 108, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
78 33 0.31
79 50 0.46
80 25 0.23
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTCAAATCCCGAAGGCATTTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:16005767 original size:41 final size:41
Alignment explanation
Indices: 16005722--16005854 Score: 203
Period size: 41 Copynumber: 3.2 Consensus size: 41
16005712 AGAACACCGA
* *
16005722 CATTAGGCCTGCTAGACGTAAAGTCTGAAATATTTCACCAG
1 CATTAAGCCTGCTAGACGTAAAGTCTGAATTATTTCACCAG
**
16005763 CATTAAGCCTGCTAGACGTAAAGTCTGAATTATTTCACTGG
1 CATTAAGCCTGCTAGACGTAAAGTCTGAATTATTTCACCAG
***
16005804 CATTAAGCCTGCTAGACGTAAAGTCTGAATTATTTCAGTGG
1 CATTAAGCCTGCTAGACGTAAAGTCTGAATTATTTCACCAG
16005845 CATTAAGCCT
1 CATTAAGCCT
16005855 ACTAAGCATA
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 87 1.00
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (41 bp):
CATTAAGCCTGCTAGACGTAAAGTCTGAATTATTTCACCAG
Found at i:16006054 original size:61 final size:61
Alignment explanation
Indices: 16005971--16006101 Score: 156
Period size: 61 Copynumber: 2.1 Consensus size: 61
16005961 ACATGAATAA
* * * * *
16005971 ATATATATAATTCATAACATTAAGTTTAGCTCAAAGAACTTGTATA-TTACATTCGAACCTC
1 ATATATATAATTCAAAACATTAAATTCAGCTCAAAGAACTTGTA-ACCTACATTCGAACCAC
* * * * *
16006032 ATATGTATAGTTCAAAACATTAAATTCAGCTCAATGAATTTGTAACCTATATTCGAACCAC
1 ATATATATAATTCAAAACATTAAATTCAGCTCAAAGAACTTGTAACCTACATTCGAACCAC
16006093 ATATATATA
1 ATATATATA
16006102 TAAAAATGTA
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
60 1 0.02
61 57 0.98
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.35
Consensus pattern (61 bp):
ATATATATAATTCAAAACATTAAATTCAGCTCAAAGAACTTGTAACCTACATTCGAACCAC
Found at i:16006179 original size:65 final size:65
Alignment explanation
Indices: 16006053--16006195 Score: 164
Period size: 65 Copynumber: 2.2 Consensus size: 65
16006043 TCAAAACATT
* *
16006053 AAATTCAGCTCAATGAATTTGTAACCTATATTCGAACCACATATATATATAAAAATGTATATATC
1 AAATTCAGCTCAATGAATTTGCAACCTATATTCGAACCACATACATATATAAAAATGTATATATC
* * * * * *
16006118 AAATTCAGCTCAA-GAGATTTTGCAATCTATGTTTGAACCACATACGTATA-AGAAATTTATATA
1 AAATTCAGCTCAATGA-A-TTTGCAACCTATATTCGAACCACATACATATATAAAAATGTATATA
*
16006181 TT
64 TC
*
16006183 AAATTCAACTCAA
1 AAATTCAGCTCAA
16006196 AAACTTGAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
64 2 0.03
65 38 0.58
66 26 0.39
ACGTcount: A:0.42, C:0.15, G:0.09, T:0.34
Consensus pattern (65 bp):
AAATTCAGCTCAATGAATTTGCAACCTATATTCGAACCACATACATATATAAAAATGTATATATC
Found at i:16013763 original size:41 final size:41
Alignment explanation
Indices: 16013702--16013837 Score: 157
Period size: 41 Copynumber: 3.3 Consensus size: 41
16013692 ATTCACGGAC
* * *
16013702 ATTAAGCGTGCTAGATGTAAAGTCTGAAATATTTCACCGGT
1 ATTAAGCCTGCTAGACGTAAAGTCTGAAATATTTCACTGGT
* * *
16013743 ATTAAGCCTGTTAGACGTAAAGTCTGAATTATTTCATTGGT
1 ATTAAGCCTGCTAGACGTAAAGTCTGAAATATTTCACTGGT
* * * * *
16013784 CTTTAGCCTGCTAGACGGAAAGTCT-AAATTATTTCAGTGGC
1 ATTAAGCCTGCTAGACGTAAAGTCTGAAA-TATTTCACTGGT
16013825 ATTAAGCCTGCTA
1 ATTAAGCCTGCTA
16013838 AGCACAGAGC
Statistics
Matches: 79, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
40 2 0.03
41 77 0.97
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (41 bp):
ATTAAGCCTGCTAGACGTAAAGTCTGAAATATTTCACTGGT
Found at i:16019584 original size:33 final size:33
Alignment explanation
Indices: 16019547--16019621 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 33
16019537 CTGTTGGGAC
* * * *
16019547 AGTAAATACCAAACAAAGTAAGTCCGCTAAGGT
1 AGTAAACACAAAACAAAGTAAATCCGCTAAGAT
* * *
16019580 AGTAAACACAAAATAGAGTAAATCCTCTAAGAT
1 AGTAAACACAAAACAAAGTAAATCCGCTAAGAT
16019613 AGTAAACAC
1 AGTAAACAC
16019622 GTGTAATGCC
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.49, C:0.17, G:0.15, T:0.19
Consensus pattern (33 bp):
AGTAAACACAAAACAAAGTAAATCCGCTAAGAT
Found at i:16020936 original size:11 final size:13
Alignment explanation
Indices: 16020920--16020952 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
16020910 ATTTCACAGA
16020920 AAAATTTCG-T-G
1 AAAATTTCGTTCG
16020931 AAAATTTCGTTCG
1 AAAATTTCGTTCG
16020944 AAAATTTCG
1 AAAATTTCG
16020953 AAGTTTGGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.45
12 1 0.05
13 10 0.50
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (13 bp):
AAAATTTCGTTCG
Found at i:16022274 original size:50 final size:50
Alignment explanation
Indices: 16022152--16022386 Score: 344
Period size: 50 Copynumber: 4.7 Consensus size: 50
16022142 TATCGATGAA
* * * *** *
16022152 CACGTGTGTAGTACTGTGTGAAGGCTACTATGTGAATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGAT
* * *
16022203 CACATGTGTAGTACTAAGTGAAGGCTGCTACGTGAACCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
16022253 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
* *
16022303 CACGTGTATAGTACTATGTGAAGGCTACTACGTGAACTGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
*
16022353 CACGTGCGTAGTACTATGTGAAGGCTACTACGTG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
16022387 TATCGAATGA
Statistics
Matches: 167, Mismatches: 17, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
50 134 0.80
51 33 0.20
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.29
Consensus pattern (50 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
Found at i:16023561 original size:18 final size:18
Alignment explanation
Indices: 16023540--16023575 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
16023530 TGAACGTATA
*
16023540 ATTGAATTTGGTTGAAAT
1 ATTGAAGTTGGTTGAAAT
*
16023558 ATTGAAGTTGTTTGAAAT
1 ATTGAAGTTGGTTGAAAT
16023576 TATGTTCCGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (18 bp):
ATTGAAGTTGGTTGAAAT
Found at i:16029418 original size:11 final size:13
Alignment explanation
Indices: 16029402--16029434 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
16029392 AATTTCACAA
16029402 AAAATTTCG-T-G
1 AAAATTTCGTTCG
16029413 AAAATTTCGTTCG
1 AAAATTTCGTTCG
16029426 AAAATTTCG
1 AAAATTTCG
16029435 ACGTTTGGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.45
12 1 0.05
13 10 0.50
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (13 bp):
AAAATTTCGTTCG
Found at i:16034080 original size:19 final size:20
Alignment explanation
Indices: 16034038--16034080 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
16034028 TCATGCTTTC
*
16034038 TATTCACATTTTCATATTCA
1 TATTCACATTTTCAAATTCA
16034058 -ATTCACATTTTCAAATT-A
1 TATTCACATTTTCAAATTCA
16034076 TATTC
1 TATTC
16034081 CACTTAGTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 20 0.95
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.49
Consensus pattern (20 bp):
TATTCACATTTTCAAATTCA
Found at i:16034227 original size:45 final size:45
Alignment explanation
Indices: 16034160--16034247 Score: 122
Period size: 45 Copynumber: 2.0 Consensus size: 45
16034150 ACAGATACTC
* * ** *
16034160 GGTGGATTCAGCACATATCAACCACGTTATTAATCAATGATGTCT
1 GGTGGAATCAGCACATAGCAACCACCATACTAATCAATGATGTCT
*
16034205 GGTGGAATCAGTACATAGCAACCACCATACTAATCAATGATGT
1 GGTGGAATCAGCACATAGCAACCACCATACTAATCAATGATGT
16034248 TCGGTTCACA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.27
Consensus pattern (45 bp):
GGTGGAATCAGCACATAGCAACCACCATACTAATCAATGATGTCT
Found at i:16034283 original size:26 final size:26
Alignment explanation
Indices: 16034254--16034334 Score: 62
Period size: 26 Copynumber: 3.2 Consensus size: 26
16034244 ATGTTCGGTT
*
16034254 CACATAGTAGCCTGCACATGGTACTA
1 CACATAGTAGCCTGCACATAGTACTA
* * *
16034280 CACAT-GTGGCCAT-TACCATCCG-A-TA
1 CACATAGTAGCC-TGCA-CAT-AGTACTA
*
16034305 CACGTAGTAGCCTGCACATAGTACTA
1 CACATAGTAGCCTGCACATAGTACTA
16034331 CACA
1 CACA
16034335 CGTGATCGGA
Statistics
Matches: 40, Mismatches: 8, Indels: 14
0.65 0.13 0.23
Matches are distributed among these distances:
24 1 0.03
25 17 0.43
26 21 0.52
27 1 0.03
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (26 bp):
CACATAGTAGCCTGCACATAGTACTA
Found at i:16034334 original size:51 final size:49
Alignment explanation
Indices: 16034258--16034435 Score: 194
Period size: 51 Copynumber: 3.5 Consensus size: 49
16034248 TCGGTTCACA
* *
16034258 TAGTAGCCTGCACATGGTACTACACATGTGGCCATTACCATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACC--TACCATCCGATACACG
* ** * * ** *
16034309 TAGTAGCCTGCACATAGTACTACACACGTGATCGGAACTATCCGTTATGCA
1 TAGTAGCCTGCACATAGTACTACACATGTGA-C-CTACCATCCGATACACG
* * *
16034360 TAGTAGCCTGCACATAGTACTACACATGCGACCTATCATTCCGGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCTACCA-TCCGATACACG
16034410 TAGTAGCCTGCACATAGTACTACACA
1 TAGTAGCCTGCACATAGTACTACACA
16034436 CATGACCATC
Statistics
Matches: 104, Mismatches: 20, Indels: 7
0.79 0.15 0.05
Matches are distributed among these distances:
49 2 0.02
50 34 0.33
51 67 0.64
52 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCTACCATCCGATACACG
Found at i:16034463 original size:101 final size:101
Alignment explanation
Indices: 16034255--16034474 Score: 273
Period size: 101 Copynumber: 2.2 Consensus size: 101
16034245 TGTTCGGTTC
* * *
16034255 ACATAGTAGCCTGCACATGGTACTACACATGTGGCCATTACCATCCGATACACGTAGTAGCCTGC
1 ACATAGTAGCCTGCACATAGTACTACACATGCGACCA-TACCATCCGATACACGTAGTAGCCTGC
* * *
16034320 ACATAGTACTACACACGTGATCGGAACTATCCGTTAT
65 ACATAGTACTACACACATGACCAGAACTATCCGTTAT
* * *
16034357 GCATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCCGGTACACGTAGTAGCCTGC
1 ACATAGTAGCCTGCACATAGTACTACACATGCGACCATACCA-TCCGATACACGTAGTAGCCTGC
** *
16034421 ACATAGTACTACACACATGACCATCACTTTCAC-TTAT
65 ACATAGTACTACACACATGACCAGAACTATC-CGTTAT
* *
16034458 ACATAGTGGCCTACACA
1 ACATAGTAGCCTGCACA
16034475 CAATCTGTGC
Statistics
Matches: 101, Mismatches: 15, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
100 4 0.04
101 64 0.63
102 33 0.33
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.25
Consensus pattern (101 bp):
ACATAGTAGCCTGCACATAGTACTACACATGCGACCATACCATCCGATACACGTAGTAGCCTGCA
CATAGTACTACACACATGACCAGAACTATCCGTTAT
Found at i:16038025 original size:50 final size:50
Alignment explanation
Indices: 16037861--16038042 Score: 231
Period size: 51 Copynumber: 3.6 Consensus size: 50
16037851 GATGAACACG
* ** ***
16037861 TGTGTAGTACTGTGTGAAGGCTACTACGTGAATTGATAAATGATGGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGGTCACA
* * * *
16037912 TGTGTAGTACTAAGTGAAGGCTACTATGTGTACCG-AAAAGCTTTGGTCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAA-C-TTGGTCACA
*
16037963 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGATCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGGTCACA
16038013 TGTGTAGTACTATGTGAAGGCTACTACGTG
1 TGTGTAGTACTATGTGAAGGCTACTACGTG
16038043 TATCGAATGA
Statistics
Matches: 113, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
49 3 0.03
50 37 0.33
51 69 0.61
52 4 0.04
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGGTCACA
Found at i:16038044 original size:101 final size:102
Alignment explanation
Indices: 16037857--16038049 Score: 289
Period size: 101 Copynumber: 1.9 Consensus size: 102
16037847 TATCGATGAA
* ** ** *
16037857 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATTGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAAACATGATCACATGTGTAGTAC
*
16037922 TAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGGT
66 TAAGTGAAGGCTACTACGTGTACCGAAAAGCTTTGGT
*
16037959 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGATCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAAACATGATCACATGTGTAGTAC
* *
16038023 TATGTGAAGGCTACTACGTGTATCGAA
66 TAAGTGAAGGCTACTACGTGTACCGAA
16038050 TGATAAAAGT
Statistics
Matches: 81, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
101 45 0.56
102 36 0.44
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.30
Consensus pattern (102 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAAACATGATCACATGTGTAGTAC
TAAGTGAAGGCTACTACGTGTACCGAAAAGCTTTGGT
Found at i:16038071 original size:101 final size:102
Alignment explanation
Indices: 16037864--16038081 Score: 251
Period size: 101 Copynumber: 2.1 Consensus size: 102
16037854 GAACACGTGT
** ** *
16037864 GTAGTACTGTGTGAAGGCTACTACGTGAATTGATAAATGATGGTCACATGTGTAGTACTAAGTGA
1 GTAGTACTGTGTGAAGGCTACTACGTGAACCGATAAAACATGATCACATGTGTAGTACTAAGTGA
* * *** * * *
16037929 AGGCTACTATGTGTACCGAAAAGCTTTGGTCACGTGT
66 AGGCTACTACGTGTACCGAAAAGATAAAGTAACATGG
* * *
16037966 GTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGATCACATGTGTAGTACTATGTGA
1 GTAGTACTGTGTGAAGGCTACTACGTGAACCGATAAAACATGATCACATGTGTAGTACTAAGTGA
* *
16038030 AGGCTACTACGTGTATCG-AATGATAAAAGTAACATGG
66 AGGCTACTACGTGTACCGAAAAGAT-AAAGTAACATGG
16038067 GTAGTACTGTGTGAA
1 GTAGTACTGTGTGAA
16038082 AAACCCCAAA
Statistics
Matches: 96, Mismatches: 19, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
100 4 0.04
101 63 0.66
102 29 0.30
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (102 bp):
GTAGTACTGTGTGAAGGCTACTACGTGAACCGATAAAACATGATCACATGTGTAGTACTAAGTGA
AGGCTACTACGTGTACCGAAAAGATAAAGTAACATGG
Found at i:16039850 original size:26 final size:27
Alignment explanation
Indices: 16039821--16039871 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
16039811 GACCGTAATG
16039821 CCCCTAGAGGGTAAATGACT-ATTTTT
1 CCCCTAGAGGGTAAATGACTGATTTTT
*
16039847 CCCCTCGAGGGTAAATGACTGATTT
1 CCCCTAGAGGGTAAATGACTGATTT
16039872 GTGCTATGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (27 bp):
CCCCTAGAGGGTAAATGACTGATTTTT
Found at i:16042093 original size:77 final size:77
Alignment explanation
Indices: 16041964--16042178 Score: 227
Period size: 77 Copynumber: 2.8 Consensus size: 77
16041954 CAACAATAAA
* * *
16041964 TTTTATTTTGTTTCAAACATAAATTCAATTGAACAATCCTATTTCAGAATTTTATTCCTGCCATT
1 TTTTATTTTGTTTCAAACAAAAAATCAATTGAACAATCATATTTCAGAATTTTATTCCTGCCATT
* *
16042029 TAATAGGATTTG
66 TAACAAGATTTG
* * * * *
16042041 TTTTATTTTGTTTCAAATAGAAAAAT-AATTGAATAATCATGTTTTAGGATTTTATTCCTGCCAT
1 TTTTATTTTGTTTCAAACA-AAAAATCAATTGAACAATCATATTTCAGAATTTTATTCCTGCCAT
16042105 TTAACAAGATTTG
65 TTAACAAGATTTG
* * * * * ** *
16042118 TTTGATTTTTATTTTAAACAGAAAATCAATTTAACAATTTTGTTTCA-AGATTTTATTCCTG
1 TTTTA-TTTTGTTTCAAACAAAAAATCAATTGAACAATCATATTTCAGA-ATTTTATTCCTG
16042179 TCGCTTCATA
Statistics
Matches: 113, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
77 71 0.63
78 42 0.37
ACGTcount: A:0.33, C:0.11, G:0.10, T:0.47
Consensus pattern (77 bp):
TTTTATTTTGTTTCAAACAAAAAATCAATTGAACAATCATATTTCAGAATTTTATTCCTGCCATT
TAACAAGATTTG
Found at i:16050099 original size:20 final size:20
Alignment explanation
Indices: 16050070--16050120 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
16050060 GTATCGATCT
*
16050070 GGTATCGATACT-TTTCTTAA
1 GGTATCGATA-TATTTCCTAA
*
16050090 GGTATTGATATATTTCCTAA
1 GGTATCGATATATTTCCTAA
*
16050110 GGTATCAATAT
1 GGTATCGATAT
16050121 TCGTACTCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 1 0.04
20 25 0.96
ACGTcount: A:0.29, C:0.12, G:0.16, T:0.43
Consensus pattern (20 bp):
GGTATCGATATATTTCCTAA
Found at i:16051564 original size:58 final size:58
Alignment explanation
Indices: 16051474--16051589 Score: 223
Period size: 58 Copynumber: 2.0 Consensus size: 58
16051464 GTGAAGAAGA
16051474 AATAATTATGAAAAAGAATGTTGGTAAAGCTCTAAAATCCACCACTAATAATGATAGT
1 AATAATTATGAAAAAGAATGTTGGTAAAGCTCTAAAATCCACCACTAATAATGATAGT
*
16051532 AATAATTATGAAAAAGAATGTTGGTAAAGCTCTAAAATCCACCATTAATAATGATAGT
1 AATAATTATGAAAAAGAATGTTGGTAAAGCTCTAAAATCCACCACTAATAATGATAGT
16051590 GAATCAAGTG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.47, C:0.11, G:0.14, T:0.28
Consensus pattern (58 bp):
AATAATTATGAAAAAGAATGTTGGTAAAGCTCTAAAATCCACCACTAATAATGATAGT
Found at i:16055812 original size:23 final size:23
Alignment explanation
Indices: 16055781--16055840 Score: 61
Period size: 23 Copynumber: 2.6 Consensus size: 23
16055771 TGATATATTA
* *
16055781 TAGTTTATTGTTACTGA-AAATGT
1 TAGTATATTGTTA-TGATAAAGGT
*
16055804 TAGTATATTATT-TGATTAAAGGT
1 TAGTATATTGTTATGA-TAAAGGT
16055827 TAGTATATTGTTAT
1 TAGTATATTGTTAT
16055841 ATTCTATTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
21 3 0.10
23 26 0.87
24 1 0.03
ACGTcount: A:0.32, C:0.02, G:0.17, T:0.50
Consensus pattern (23 bp):
TAGTATATTGTTATGATAAAGGT
Found at i:16056341 original size:26 final size:26
Alignment explanation
Indices: 16056311--16056363 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16056301 TTATTGTTAG
*
16056311 TTAAATGTTAGTATATTGAGATATTT
1 TTAAATATTAGTATATTGAGATATTT
* **
16056337 TTAAATATTATTATATTGTTATATTT
1 TTAAATATTAGTATATTGAGATATTT
16056363 T
1 T
16056364 AGTTTATTGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (26 bp):
TTAAATATTAGTATATTGAGATATTT
Found at i:16067456 original size:45 final size:45
Alignment explanation
Indices: 16067392--16067485 Score: 152
Period size: 45 Copynumber: 2.1 Consensus size: 45
16067382 AACAGATACT
* * *
16067392 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCATACTAATCAATGATGTC
*
16067437 CGGTGGAATCAGCACATAGCAACCACCATACTAATCAATGATGTT
1 CGGTGGAATCAGCACATAGCAACCACCATACTAATCAATGATGTC
16067482 CGGT
1 CGGT
16067486 TCACATAGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.24
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCATACTAATCAATGATGTC
Found at i:16067516 original size:26 final size:26
Alignment explanation
Indices: 16067487--16067568 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
16067477 ATGTTCGGTT
16067487 CACATAGTAGCCTGCACATAGTACTA
1 CACATAGTAGCCTGCACATAGTACTA
* * *
16067513 CACAT-GTGGCCAT-TACCATCCG-A-TA
1 CACATAGTAGCC-TGCA-CAT-AGTACTA
*
16067538 CACGTAGTAGCCTGCACATAGTACTA
1 CACATAGTAGCCTGCACATAGTACTA
16067564 CACAT
1 CACAT
16067569 GTGATCGAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 14
0.65 0.13 0.22
Matches are distributed among these distances:
24 1 0.02
25 17 0.41
26 22 0.54
27 1 0.02
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (26 bp):
CACATAGTAGCCTGCACATAGTACTA
Found at i:16067549 original size:51 final size:50
Alignment explanation
Indices: 16067491--16067677 Score: 209
Period size: 51 Copynumber: 3.7 Consensus size: 50
16067481 TCGGTTCACA
*
16067491 TAGTAGCCTGCACATAGTACTACACATGTGGCCATTACCATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCA-TACCATCCGATACACG
* * * *
16067542 TAGTAGCCTGCACATAGTACTACACATGTGATCGAAACTATCTCGTATGCA--
1 TAGTAGCCTGCACATAGTACTACACATGTGA-CCATACCATC-CG-ATACACG
* * * *
16067593 TAGTAGCCTGCACATAGTACTACATATGCGACC-TATCATTCCGGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATACCA-TCCGATACACG
* *
16067643 TAGTAGCCTACACATAGTACTACACACGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACATGTGACCAT
16067678 CACTTTCACT
Statistics
Matches: 112, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
48 3 0.03
49 4 0.04
50 32 0.29
51 65 0.58
52 4 0.04
53 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCATACCATCCGATACACG
Found at i:16067665 original size:101 final size:101
Alignment explanation
Indices: 16067489--16067673 Score: 282
Period size: 101 Copynumber: 1.8 Consensus size: 101
16067479 GTTCGGTTCA
* * *
16067489 CATAGTAGCCTGCACATAGTACTACACATGTGGCCATTACCATCCGATACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCA-TACCATCCGATACACGTAGTAGCCTACA
*
16067554 CATAGTACTACACATGTGATCGAAACTATCTCGTATG
65 CATAGTACTACACACGTGATCGAAACTATCTCGTATG
* * *
16067591 CATAGTAGCCTGCACATAGTACTACATATGCGACC-TATCATTCCGGTACACGTAGTAGCCTACA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATACCA-TCCGATACACGTAGTAGCCTACA
16067655 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
16067674 CCATCACTTT
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
100 4 0.05
101 39 0.52
102 32 0.43
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATACCATCCGATACACGTAGTAGCCTACAC
ATAGTACTACACACGTGATCGAAACTATCTCGTATG
Found at i:16067696 original size:101 final size:101
Alignment explanation
Indices: 16067488--16067707 Score: 264
Period size: 101 Copynumber: 2.2 Consensus size: 101
16067478 TGTTCGGTTC
* * *
16067488 ACATAGTAGCCTGCACATAGTACTACACATGTGGCCATTACCATCCGATACACGTAGTAGCCTGC
1 ACATAGTAGCCTGCACATAGTACTACACATGCGACCA-TACCATCCGATACACGTAGTAGCCTAC
* * *
16067553 ACATAGTACTACACATGTGATCGAAACTATCTCGTAT
65 ACATAGTACTACACACGTGATCCAAACTATCACGTAT
* * * *
16067590 GCATAGTAGCCTGCACATAGTACTACATATGCGACC-TATCATTCCGGTACACGTAGTAGCCTAC
1 ACATAGTAGCCTGCACATAGTACTACACATGCGACCATACCA-TCCGATACACGTAGTAGCCTAC
* * *
16067654 ACATAGTACTACACACGTGA-CCATCACTTTCACTTAT
65 ACATAGTACTACACACGTGATCCA-AACTATCACGTAT
* *
16067691 ACATAGTGGCCTACACA
1 ACATAGTAGCCTGCACA
16067708 CAATATGTGC
Statistics
Matches: 100, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
100 6 0.06
101 62 0.62
102 32 0.32
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (101 bp):
ACATAGTAGCCTGCACATAGTACTACACATGCGACCATACCATCCGATACACGTAGTAGCCTACA
CATAGTACTACACACGTGATCCAAACTATCACGTAT
Found at i:16071185 original size:51 final size:50
Alignment explanation
Indices: 16071122--16071307 Score: 223
Period size: 51 Copynumber: 3.7 Consensus size: 50
16071112 TATCGTTGAA
* * *
16071122 CACATGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGT
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAA-GTTGGT
* * * *
16071173 CACATGTATAGTACTAAGTGAAGGCTACTATGTGTACCGA-AAAGCTTTGGT
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAAG--TTGGT
* * *
16071224 CATATGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGAT
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTGAACCGAT-AAAGTTGGT
*
16071274 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTG
16071308 TATCGAATGA
Statistics
Matches: 115, Mismatches: 16, Indels: 9
0.82 0.11 0.06
Matches are distributed among these distances:
49 1 0.01
50 39 0.34
51 72 0.63
52 3 0.03
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (50 bp):
CACATGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAAGTTGGT
Found at i:16071337 original size:101 final size:102
Alignment explanation
Indices: 16071123--16071346 Score: 254
Period size: 101 Copynumber: 2.2 Consensus size: 102
16071113 ATCGTTGAAC
* ** *
16071123 ACATGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTATAGTACT
1 ACATGTGTAGTACTGTGTGAAGGCTACTACGTGAACCGATAAAACATGATCACATGTATAGTACT
* * *** *
16071188 AAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGGTC
66 AAGTGAAGGCTACTACGTGTACCGAAAAGATAAAGTA
* * * * *
16071225 ATATGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGATCACGTGTGTAGTACT
1 ACATGTGTAGTACTGTGTGAAGGCTACTACGTGAACCGATAAAACATGATCACATGTATAGTACT
* * *
16071289 ATGTGAAGGCTACTACGTGTATCG-AATGATAAAAGTA
66 AAGTGAAGGCTACTACGTGTACCGAAAAGAT-AAAGTA
*
16071326 ACATGGGTAGTACTGTGTGAA
1 ACATGTGTAGTACTGTGTGAA
16071347 AAACCCAAAA
Statistics
Matches: 100, Mismatches: 21, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
100 4 0.04
101 61 0.61
102 35 0.35
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.29
Consensus pattern (102 bp):
ACATGTGTAGTACTGTGTGAAGGCTACTACGTGAACCGATAAAACATGATCACATGTATAGTACT
AAGTGAAGGCTACTACGTGTACCGAAAAGATAAAGTA
Found at i:16073118 original size:26 final size:27
Alignment explanation
Indices: 16073089--16073141 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
16073079 ATGACCGTAA
16073089 TGCCCCTAGAGGGTAAATGACT-ATTT
1 TGCCCCTAGAGGGTAAATGACTGATTT
**
16073115 TGCCCCTCTAGGGTAAATGACTGATTT
1 TGCCCCTAGAGGGTAAATGACTGATTT
16073142 GTGCTATGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (27 bp):
TGCCCCTAGAGGGTAAATGACTGATTT
Found at i:16076132 original size:77 final size:77
Alignment explanation
Indices: 16076004--16076185 Score: 217
Period size: 77 Copynumber: 2.4 Consensus size: 77
16075994 AACAATAAAT
* * * *
16076004 TTTATTTTGTTTCAAACA-TAAATTCAATTGAACAATCCTATTTCAGAATTTTATTCCTGCCATT
1 TTTATTTTGTTTCAAACAGAAAAATCAACTGAACAATCATATTTCAGAATTTTATTCCTGCCATT
* *
16076068 TAATAGGATTTG
66 TAACAAGATTTG
* * * *
16076080 TCTTATTTTGTTTCAAATAGAAAAAT-AACTGAACAATCATGTTTTAGGATTTTATTCCTGCCAT
1 T-TTATTTTGTTTCAAACAGAAAAATCAACTGAACAATCATATTTCAGAATTTTATTCCTGCCAT
16076144 TTAACAAGATTTG
65 TTAACAAGATTTG
*
16076157 TTTGATTTTTGTTTTAAACAG-AAAATCAA
1 TTT-A-TTTTGTTTCAAACAGAAAAATCAA
16076186 TTTATCAATT
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
76 3 0.03
77 67 0.75
78 19 0.21
ACGTcount: A:0.34, C:0.13, G:0.10, T:0.43
Consensus pattern (77 bp):
TTTATTTTGTTTCAAACAGAAAAATCAACTGAACAATCATATTTCAGAATTTTATTCCTGCCATT
TAACAAGATTTG
Found at i:16084076 original size:20 final size:20
Alignment explanation
Indices: 16084047--16084097 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
16084037 GTATCGATCT
*
16084047 GGTATCGATACT-TTTCTTAA
1 GGTATCGATA-TATTTCCTAA
*
16084067 GGTATTGATATATTTCCTAA
1 GGTATCGATATATTTCCTAA
*
16084087 GGTATCAATAT
1 GGTATCGATAT
16084098 TCGTACTCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 1 0.04
20 25 0.96
ACGTcount: A:0.29, C:0.12, G:0.16, T:0.43
Consensus pattern (20 bp):
GGTATCGATATATTTCCTAA
Found at i:16085541 original size:58 final size:58
Alignment explanation
Indices: 16085451--16085566 Score: 223
Period size: 58 Copynumber: 2.0 Consensus size: 58
16085441 GTGAAGAAGA
16085451 AATAATTATGAAAAAGAATGTTGGTAAAGCTCTAAAATCCACCACTAATAATGATAGT
1 AATAATTATGAAAAAGAATGTTGGTAAAGCTCTAAAATCCACCACTAATAATGATAGT
*
16085509 AATAATTATGAAAAAGAATGTTGGTAAAGCTCTAAAATCCACCATTAATAATGATAGT
1 AATAATTATGAAAAAGAATGTTGGTAAAGCTCTAAAATCCACCACTAATAATGATAGT
16085567 GAATCAAGTG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.47, C:0.11, G:0.14, T:0.28
Consensus pattern (58 bp):
AATAATTATGAAAAAGAATGTTGGTAAAGCTCTAAAATCCACCACTAATAATGATAGT
Found at i:16089788 original size:23 final size:23
Alignment explanation
Indices: 16089757--16089816 Score: 61
Period size: 23 Copynumber: 2.6 Consensus size: 23
16089747 TGATATATTA
* *
16089757 TAGTTTATTGTTACTGA-AAATGT
1 TAGTATATTGTTA-TGATAAAGGT
*
16089780 TAGTATATTATT-TGATTAAAGGT
1 TAGTATATTGTTATGA-TAAAGGT
16089803 TAGTATATTGTTAT
1 TAGTATATTGTTAT
16089817 ATTCTATTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
21 3 0.10
23 26 0.87
24 1 0.03
ACGTcount: A:0.32, C:0.02, G:0.17, T:0.50
Consensus pattern (23 bp):
TAGTATATTGTTATGATAAAGGT
Found at i:16090320 original size:26 final size:26
Alignment explanation
Indices: 16090290--16090342 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16090280 TTATTGTTAG
*
16090290 TTAAATGTTAGTATATTGAGATATTT
1 TTAAATATTAGTATATTGAGATATTT
* **
16090316 TTAAATATTATTATATTGTTATATTT
1 TTAAATATTAGTATATTGAGATATTT
16090342 T
1 T
16090343 AGTTTATTGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (26 bp):
TTAAATATTAGTATATTGAGATATTT
Found at i:16102194 original size:89 final size:89
Alignment explanation
Indices: 16102071--16102486 Score: 246
Period size: 89 Copynumber: 4.4 Consensus size: 89
16102061 TCAATATGGT
* *
16102071 GAATCTTATCTTCCTGAAGTTACAGTGCAGCAGATTGAAGCCA-CCAACCTTATCTCCCTAAAGT
1 GAATCTTAT-TTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAGCCAACCTTATCTCCCTAAAGT
*
16102135 TGCAGCGAAGTAGACTGAAGACAGC
65 TGCAGCGAAGCAGACTGAAGACAGC
* * * * *
16102160 GAATCTTATTTCCCTGACGTTGCAGTGGAACAGATTAAAGCTACAAATTATGGCAGATCTTATCT
1 GAATCTTATTT-CCTGAAGTTGCAGTGGAGCAGATTGAAGC--C-----A-GCCA-ACCTTATCT
* * * * * * *
16102225 TCTTGAAGTTGCAGTGGAGCAGATTGAAGCCA-C
56 CCCTAAAGTTGCAGCGAAGCAGACTGAAGACAGC
* ** * * * * * * ***
16102258 CAGCCTTATCTACCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGT
1 GAATCTTAT-TTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAGCCAACCTTATCTCCCTAAAGT
* * *
16102323 TGCAGTGGAA-CAGATTAAAGCTACAAATTATTGC
65 TGCAG-CGAAGCAGACTGAAG--AC-----A--GC
* *
16102357 GGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCA-CCAGCCTTATCTCCCTAAAGT
1 GAATCTTAT-TTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAGCCAACCTTATCTCCCTAAAGT
* *
16102421 TGCAGCGGAGCAGGCTGAAGACAGC
65 TGCAGCGAAGCAGACTGAAGACAGC
** * *
16102446 GAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGC
1 GAATCTTATTT-CCTGAAGTTGCAGTGGAGCAGATTGAAGC
16102487 TACAAATTAT
Statistics
Matches: 243, Mismatches: 59, Indels: 50
0.69 0.17 0.14
Matches are distributed among these distances:
88 4 0.02
89 95 0.39
90 4 0.02
91 4 0.02
96 5 0.02
97 2 0.01
98 59 0.24
99 70 0.29
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (89 bp):
GAATCTTATTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAGCCAACCTTATCTCCCTAAAGTT
GCAGCGAAGCAGACTGAAGACAGC
Found at i:16102281 original size:44 final size:44
Alignment explanation
Indices: 16102218--16102433 Score: 171
Period size: 44 Copynumber: 4.7 Consensus size: 44
16102208 TATGGCAGAT
* *
16102218 CTTATCTTCTTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGC
* * * * **
16102262 CTTATCTACCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCGAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCA-CCAGC
* ** * * **
16102307 CTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTACAAATTATTGC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC--C--ACCA--GC
*
16102357 GGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGC
1 ----CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGC
* *
16102405 CTTATCTCCCTAAAGTTGCAGCGGAGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAG
16102434 GCTGAAGACA
Statistics
Matches: 131, Mismatches: 30, Indels: 22
0.72 0.16 0.12
Matches are distributed among these distances:
44 61 0.47
45 31 0.24
47 1 0.01
48 3 0.02
49 1 0.01
50 2 0.02
52 1 0.01
54 31 0.24
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGC
Found at i:16102324 original size:143 final size:143
Alignment explanation
Indices: 16102073--16102574 Score: 799
Period size: 143 Copynumber: 3.5 Consensus size: 143
16102063 AATATGGTGA
* * *
16102073 ATCTTATCTTCCTGAAGTTACAGTGCAGCAGATTGAAGCCACCAACCTTATCTCCCTAAAGTTGC
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTAAAGTTGC
* * *
16102138 AGCGAAGTAGACTGAAGACAGCGAATCTTATTTCCCTGACGTTGCAGTGGAACAGATTAAAGCTA
66 AGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTA
16102203 CAAATTATGGCAG
131 CAAATTATGGCAG
* * *
16102216 ATCTTATCTTCTTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTACCTGAAGTTGC
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTAAAGTTGC
*
16102281 AGTGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTA
66 AGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTA
* *
16102346 CAAATTATTGCGG
131 CAAATTATGGCAG
16102359 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTAAAGTTGC
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTAAAGTTGC
*
16102424 AGCGGAGCAGGCTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTA
66 AGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTA
16102489 CAAATTATGGCAG
131 CAAATTATGGCAG
* * * * * * *
16102502 ATTTTATCTTCCTGAATTTGTAGTGGAGCAAATTGAAGCCACCAATCC-TATCTTCCTGAAGTTG
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACC-AGCCTTATCTCCCTAAAGTTG
*
16102566 CAGTGGAGC
65 CAGCGGAGC
16102575 GGATTAAAAC
Statistics
Matches: 331, Mismatches: 27, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
143 328 0.99
144 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (143 bp):
ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTAAAGTTGC
AGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTA
CAAATTATGGCAG
Found at i:16103823 original size:12 final size:12
Alignment explanation
Indices: 16103800--16103831 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
16103790 ATTAAAATTA
16103800 ATTATT-TTACT
1 ATTATTATTACT
16103811 ATTATTATTACT
1 ATTATTATTACT
16103823 ATTATTATT
1 ATTATTATT
16103832 TTACTTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (12 bp):
ATTATTATTACT
Found at i:16103851 original size:26 final size:26
Alignment explanation
Indices: 16103785--16103843 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 26
16103775 TTTTGCTATT
**
16103785 TTATTATTAAAATTAATTATTTTACTA
1 TTATTATTACTATT-ATTATTTTACTA
16103812 TTATTATTACTATTATTATTTTACT-
1 TTATTATTACTATTATTATTTTACTA
16103837 TT-TTATT
1 TTATTATT
16103844 TATTTATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
24 5 0.17
25 2 0.07
26 11 0.37
27 12 0.40
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (26 bp):
TTATTATTACTATTATTATTTTACTA
Found at i:16105012 original size:18 final size:18
Alignment explanation
Indices: 16104991--16105034 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
16104981 TGGTTCTTAC
16104991 TATTTTTAAAATTAAAT-A
1 TATTTTTAAAA-TAAATCA
*
16105009 TA-TTTTAAAATAATTCA
1 TATTTTTAAAATAAATCA
16105026 TATTTTTAA
1 TATTTTTAA
16105035 TAAAACTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 4 0.17
17 11 0.48
18 8 0.35
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (18 bp):
TATTTTTAAAATAAATCA
Found at i:16106724 original size:16 final size:16
Alignment explanation
Indices: 16106703--16106771 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
16106693 TTTGGTTCGC
16106703 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
16106719 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
16106735 TGTATTGAGATTAGAGG
1 TGTATTG-GATTAGAGG
16106752 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
16106768 TGTA
1 TGTA
16106772 ATAGCTAATC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.26, C:0.00, G:0.36, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:16106749 original size:33 final size:32
Alignment explanation
Indices: 16106703--16106771 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
16106693 TTTGGTTCGC
16106703 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
16106735 TGTATTGAGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTG-GATTAGAGGTGTATTGGATTAGAGG
16106768 TGTA
1 TGTA
16106772 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 7 0.19
33 29 0.81
ACGTcount: A:0.26, C:0.00, G:0.36, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGGATTAGAGG
Found at i:16107028 original size:18 final size:17
Alignment explanation
Indices: 16107007--16107041 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16106997 TTATTATTAA
*
16107007 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
16107025 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
16107042 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:16107268 original size:18 final size:17
Alignment explanation
Indices: 16107247--16107281 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16107237 TTATTATTAA
*
16107247 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
16107265 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
16107282 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:16107474 original size:119 final size:120
Alignment explanation
Indices: 16106990--16108446 Score: 2764
Period size: 119 Copynumber: 12.2 Consensus size: 120
16106980 ATCATATTTA
*
16106990 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
*
16107055 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* *
16107110 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
*
16107175 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
16107230 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
16107295 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
16107350 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAA-AAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
16107414 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* *
16107469 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
*
16107534 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
16107589 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
16107654 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
16107709 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAA-AAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
16107773 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
16107828 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
16107893 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
16107948 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAA-AAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
16108012 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
16108067 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAA-AAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
16108131 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
16108186 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAA-AAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
*
16108250 TGTTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
16108305 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAA-AAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
16108369 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
16108424 AACATAATTATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
16108447 AACTTGAAAA
Statistics
Matches: 1321, Mismatches: 14, Indels: 5
0.99 0.01 0.00
Matches are distributed among these distances:
119 687 0.52
120 634 0.48
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:16107627 original size:18 final size:17
Alignment explanation
Indices: 16107606--16107640 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16107596 TTATTATTAA
*
16107606 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
16107624 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
16107641 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:16107650 original size:359 final size:358
Alignment explanation
Indices: 16106990--16108446 Score: 2790
Period size: 359 Copynumber: 4.1 Consensus size: 358
16106980 ATCATATTTA
*
16106990 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAA-AAAATTCTTAATAATTAA
*
16107055 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
65 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTA
16107120 TTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAATATTCTTATA
130 TTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAATATTCTTATA
*
16107185 TTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATA
195 TTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATA
16107250 TATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATTAATTTACT
260 TATTTTAATTAAAATATATAATTTAA-AAAATTCTTAATAATTAATATTCTTATATTAATTTACT
16107315 CAAATCATAATATATGATACTGTAAAATATAAATT
324 CAAATCATAATATATGATACTGTAAAATATAAATT
16107350 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAATTCTTAATAATTAAT
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAATTCTTAATAATTAAT
16107415 ATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTAT
66 ATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTAT
16107480 TATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAATATTCTTATAT
131 TATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAATATTCTTATAT
*
16107545 TAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATAT
196 TAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATAT
16107610 ATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATTAATTTACTC
261 ATTTTAATTAAAATATATAATTTAA-AAAATTCTTAATAATTAATATTCTTATATTAATTTACTC
16107675 AAATCATAATATATGATACTGTAAAATATAAATT
325 AAATCATAATATATGATACTGTAAAATATAAATT
16107709 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAATTCTTAATAATTAAT
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAATTCTTAATAATTAAT
16107774 ATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTAT
66 ATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTAT
*
16107839 TATTAAATATATTTTAATTAAACTATATAATTTAATGAAATTCTTAATAATTAATATTCTTATAT
131 TATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAATATTCTTATAT
16107904 TAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATAT
196 TAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATAT
*
16107969 ATTTTAATTAAACTATATAATTTAAAAAATTCTTAATAATTAATATTCTTATATTAATTTACTCA
261 ATTTTAATTAAAATATATAATTTAAAAAATTCTTAATAATTAATATTCTTATATTAATTTACTCA
16108034 AATCATAATATATGATACTGTAAAATATAAATT
326 AATCATAATATATGATACTGTAAAATATAAATT
16108067 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAATTCTTAATAATTAAT
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAATTCTTAATAATTAAT
16108132 ATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTAT
66 ATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTAT
* * *
16108197 TATTAAATATATTTTAATTAAACTATATAATTTAA-AAAATTCTTAATAATTAATGTTCTTATAT
131 TATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAATATTCTTATAT
16108261 TAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATAT
196 TAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATAT
*
16108326 ATTTTAATTAAACTATATAATTTAAAAAATTCTTAATAATTAATATTCTTATATTAATTTACTCA
261 ATTTTAATTAAAATATATAATTTAAAAAATTCTTAATAATTAATATTCTTATATTAATTTACTCA
16108391 AATCATAATATATGATACTGTAAAATATAAATT
326 AATCATAATATATGATACTGTAAAATATAAATT
16108424 AACATAATTATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
16108447 AACTTGAAAA
Statistics
Matches: 1090, Mismatches: 7, Indels: 3
0.99 0.01 0.00
Matches are distributed among these distances:
357 213 0.20
358 238 0.22
359 594 0.54
360 45 0.04
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (358 bp):
AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAATTCTTAATAATTAAT
ATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTAT
TATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATAATTAATATTCTTATAT
TAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATAT
ATTTTAATTAAAATATATAATTTAAAAAATTCTTAATAATTAATATTCTTATATTAATTTACTCA
AATCATAATATATGATACTGTAAAATATAAATT
Found at i:16113491 original size:45 final size:46
Alignment explanation
Indices: 16113403--16113493 Score: 130
Period size: 46 Copynumber: 2.0 Consensus size: 46
16113393 AAAATATGTC
*
16113403 TATAGTGATTGTATTTTTTGAAAATTTCAAAGGAGGAAATTTAATT
1 TATAGTGATTGTATTTTTTAAAAATTTCAAAGGAGGAAATTTAATT
* * * *
16113449 TATAGTGGTTGTATTTTTTAAAAATTTTATAGTAGG-AATTTAATT
1 TATAGTGATTGTATTTTTTAAAAATTTCAAAGGAGGAAATTTAATT
16113494 CTGTGAAGAA
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
45 9 0.22
46 31 0.77
ACGTcount: A:0.35, C:0.01, G:0.16, T:0.47
Consensus pattern (46 bp):
TATAGTGATTGTATTTTTTAAAAATTTCAAAGGAGGAAATTTAATT
Found at i:16113546 original size:25 final size:26
Alignment explanation
Indices: 16113508--16113556 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
16113498 GAAGAATAAG
*
16113508 TTTTATTATAAAAATCATGTTTAATT
1 TTTTATTATAAAAATCAAGTTTAATT
*
16113534 TTTTATT-TCAAAATCAAGTTTAA
1 TTTTATTATAAAAATCAAGTTTAA
16113557 GAATTGGAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.39, C:0.06, G:0.04, T:0.51
Consensus pattern (26 bp):
TTTTATTATAAAAATCAAGTTTAATT
Found at i:16113830 original size:23 final size:23
Alignment explanation
Indices: 16113800--16113845 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
16113790 AGAAGCTAGT
16113800 ATGTAACTTAATCAGGCAGCAGA
1 ATGTAACTTAATCAGGCAGCAGA
16113823 ATGTAACTTAATCAGGCAGCAGA
1 ATGTAACTTAATCAGGCAGCAGA
16113846 CATGAAACAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (23 bp):
ATGTAACTTAATCAGGCAGCAGA
Found at i:16115044 original size:23 final size:22
Alignment explanation
Indices: 16114993--16115049 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 22
16114983 ATTTATATAG
16114993 CAAATTGTAACAAAAAATAACAAT
1 CAAATT-TAA-AAAAAATAACAAT
*
16115017 AAAATTTAAAAAAACCATAA-AAT
1 CAAATTTAAAAAAA--ATAACAAT
16115040 CAAATTTAAA
1 CAAATTTAAA
16115050 TTTAAAAAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
22 5 0.17
23 15 0.52
24 9 0.31
ACGTcount: A:0.65, C:0.11, G:0.02, T:0.23
Consensus pattern (22 bp):
CAAATTTAAAAAAAATAACAAT
Found at i:16117822 original size:50 final size:50
Alignment explanation
Indices: 16117754--16117942 Score: 213
Period size: 50 Copynumber: 3.7 Consensus size: 50
16117744 TTTTCTGTAC
* * *
16117754 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGCTCTCATATCGA
* *
16117804 TGCTC-ATGCCATGTCCCAGACATGGTCTTAC--GGGAGACCTCTCATCTCGG
1 TGC-CAATGCCATGTCCCAGACATGGTCTTACATGGGAG--CTCTCATATCGA
* *
16117854 TGCCAATGCCATGTCCCAGACATGGTCTCACATGGGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGCTCTCAT-A--TC---GA
16117910 TGCCAATGCCATGTCCCAGACATGGTCTTACAT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAT
16117943 CGGATCTCAT
Statistics
Matches: 117, Mismatches: 10, Indels: 18
0.81 0.07 0.12
Matches are distributed among these distances:
48 5 0.04
49 1 0.01
50 71 0.61
51 1 0.01
52 4 0.03
53 2 0.02
56 33 0.28
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGCTCTCATATCGA
Found at i:16117881 original size:100 final size:103
Alignment explanation
Indices: 16117754--16117940 Score: 265
Period size: 100 Copynumber: 1.8 Consensus size: 103
16117744 TTTTCTGTAC
* * **
16117754 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCAT-A-TC-GATGCTC-ATGCCA
1 TGCCAATGCCATATCCCAGACATGGTCTCACATGGGACCTCTCATAACTCAGATGC-CAATGCCA
16117815 TGTCCCAGACATGGTCTTACGGGAGACCTCTCATCTCGG
65 TGTCCCAGACATGGTCTTACGGGAGACCTCTCATCTCGG
*
16117854 TGCCAATGCCATGTCCCAGACATGGTCTCACATGGGACCTCTCATAATCTCAATGATGCCAATGC
1 TGCCAATGCCATATCCCAGACATGGTCTCACATGGGACCTCTCATAA-CTC-A-GATGCCAATGC
16117919 CATGTCCCAGACATGGTCTTAC
63 CATGTCCCAGACATGGTCTTAC
16117941 ATCGGATCTC
Statistics
Matches: 75, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
100 40 0.53
101 1 0.01
103 2 0.03
105 1 0.01
106 31 0.41
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (103 bp):
TGCCAATGCCATATCCCAGACATGGTCTCACATGGGACCTCTCATAACTCAGATGCCAATGCCAT
GTCCCAGACATGGTCTTACGGGAGACCTCTCATCTCGG
Found at i:16125341 original size:26 final size:26
Alignment explanation
Indices: 16125305--16125382 Score: 147
Period size: 26 Copynumber: 3.0 Consensus size: 26
16125295 TCCCAGACAT
16125305 AGTCTTACATGGGATATTTTCTGTAC
1 AGTCTTACATGGGATATTTTCTGTAC
16125331 AGTCTTACATGGGATATTTTCTGTAC
1 AGTCTTACATGGGATATTTTCTGTAC
*
16125357 AGTCTTACATGGGATGTTTTCTGTAC
1 AGTCTTACATGGGATATTTTCTGTAC
16125383 TACCAATGTC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.42
Consensus pattern (26 bp):
AGTCTTACATGGGATATTTTCTGTAC
Found at i:16131391 original size:49 final size:49
Alignment explanation
Indices: 16131319--16131414 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
16131309 TAGCACACAA
16131319 TGTGTGAGATTCTCGCGTATCTGATATTATTCTAGTGGTCCAAAGGGAC
1 TGTGTGAGATTCTCGCGTATCTGATATTATTCTAGTGGTCCAAAGGGAC
*
16131368 TGTGTGAGATTCTCTCGTATCTGATATTATTCTAGTGGTCCAAAGGG
1 TGTGTGAGATTCTCGCGTATCTGATATTATTCTAGTGGTCCAAAGGG
16131415 TATACAAAGG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.22, C:0.16, G:0.26, T:0.36
Consensus pattern (49 bp):
TGTGTGAGATTCTCGCGTATCTGATATTATTCTAGTGGTCCAAAGGGAC
Found at i:16141030 original size:16 final size:16
Alignment explanation
Indices: 16141009--16141039 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
16140999 ATATTTAGTC
16141009 ATATAATAAATTATTA
1 ATATAATAAATTATTA
*
16141025 ATATAATTAATTATT
1 ATATAATAAATTATT
16141040 TTTAATAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
ATATAATAAATTATTA
Found at i:16141102 original size:16 final size:17
Alignment explanation
Indices: 16141066--16141102 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
16141056 AAATTTATTT
*
16141066 TAATAGTAAGTTTTAAA
1 TAATAATAAGTTTTAAA
16141083 -AATAATAA-TTTTAAA
1 TAATAATAAGTTTTAAA
16141098 TAATA
1 TAATA
16141103 TTATTCACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (17 bp):
TAATAATAAGTTTTAAA
Found at i:16144865 original size:38 final size:38
Alignment explanation
Indices: 16144814--16144892 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
16144804 TTGGTAGGGA
16144814 TTTAACATGTCTTTATTATGAAGTATTTAGCCTATTTT
1 TTTAACATGTCTTTATTATGAAGTATTTAGCCTATTTT
*
16144852 TTTAACATGTCTTTATTATGAAGTATTTAGTCTATTTT
1 TTTAACATGTCTTTATTATGAAGTATTTAGCCTATTTT
16144890 TTT
1 TTT
16144893 CTATCATAAG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.25, C:0.09, G:0.10, T:0.56
Consensus pattern (38 bp):
TTTAACATGTCTTTATTATGAAGTATTTAGCCTATTTT
Found at i:16148844 original size:15 final size:15
Alignment explanation
Indices: 16148824--16148853 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
16148814 TTAATATTCG
16148824 AATATTTATTTGATT
1 AATATTTATTTGATT
16148839 AATATTTATTTGATT
1 AATATTTATTTGATT
16148854 CATTCTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (15 bp):
AATATTTATTTGATT
Found at i:16149145 original size:18 final size:18
Alignment explanation
Indices: 16149124--16149165 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
16149114 TAATTTAGCC
16149124 ATTTTTATTTTTA-TTATA
1 ATTTTTATTTTTAGTT-TA
*
16149142 ATTTTTGTTTTTAGTTTA
1 ATTTTTATTTTTAGTTTA
16149160 ATTTTT
1 ATTTTT
16149166 TCATTCTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 20 0.91
19 2 0.09
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (18 bp):
ATTTTTATTTTTAGTTTA
Found at i:16149185 original size:31 final size:30
Alignment explanation
Indices: 16149131--16149194 Score: 76
Period size: 32 Copynumber: 2.1 Consensus size: 30
16149121 GCCATTTTTA
*
16149131 TTTTTATTATAATTTTTGTTTTTAGTTTAAT
1 TTTTTATTATAATTTTTGCTTTTA-TTTAAT
* *
16149162 TTTTTCATTCTAATTTTT-CTTTTATTTTAT
1 TTTTT-ATTATAATTTTTGCTTTTATTTAAT
16149192 TTT
1 TTT
16149195 GGTAGGTTCC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
30 8 0.28
31 10 0.34
32 11 0.38
ACGTcount: A:0.19, C:0.05, G:0.03, T:0.73
Consensus pattern (30 bp):
TTTTTATTATAATTTTTGCTTTTATTTAAT
Found at i:16164156 original size:28 final size:28
Alignment explanation
Indices: 16164091--16164241 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
16164081 GAGATTGGCG
* * * *
16164091 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
16164120 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
16164148 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
16164176 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
16164204 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
16164231 CTGAGTGTGCG
1 CTAAGTGTGCG
16164242 GACTTAATAT
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 24 0.21
28 76 0.66
29 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:16182862 original size:22 final size:22
Alignment explanation
Indices: 16182837--16182880 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
16182827 GTTATCTAGG
16182837 GATAGTCTTCTCCATTCGATTC
1 GATAGTCTTCTCCATTCGATTC
16182859 GATAGTCTTCTCCATTCGATTC
1 GATAGTCTTCTCCATTCGATTC
16182881 TTTCTTATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.27, G:0.14, T:0.41
Consensus pattern (22 bp):
GATAGTCTTCTCCATTCGATTC
Found at i:16185066 original size:18 final size:18
Alignment explanation
Indices: 16185025--16185066 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
16185015 GTTAGTTTTG
*
16185025 GTATCTGTTAATTTGTAT
1 GTATCTGATAATTTGTAT
* *
16185043 -TATCTGATATTTTGTCT
1 GTATCTGATAATTTGTAT
16185060 GTATCTG
1 GTATCTG
16185067 GCAATGGGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.19, C:0.10, G:0.17, T:0.55
Consensus pattern (18 bp):
GTATCTGATAATTTGTAT
Found at i:16190000 original size:21 final size:21
Alignment explanation
Indices: 16189959--16190000 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
16189949 TTATTTTTGA
*
16189959 ACATTTTAAATTTTACTTAAT
1 ACATTTTAAATTTTACATAAT
16189980 ACATTTATAAATTTTA-ATAAT
1 ACATTT-TAAATTTTACATAAT
16190001 GTTTTTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (21 bp):
ACATTTTAAATTTTACATAAT
Found at i:16192629 original size:30 final size:30
Alignment explanation
Indices: 16192595--16192656 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
16192585 ATAATTTAAC
* *
16192595 ATATTAATTGCTTAAAAATATATAAATTTT
1 ATATTAATTACTTAAAAATATATAAAATTT
*
16192625 ATATTAATTACTTAAAAATATTTAAAATTT
1 ATATTAATTACTTAAAAATATATAAAATTT
16192655 AT
1 AT
16192657 TTCATATATG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (30 bp):
ATATTAATTACTTAAAAATATATAAAATTT
Found at i:16198946 original size:157 final size:156
Alignment explanation
Indices: 16198710--16199181 Score: 739
Period size: 157 Copynumber: 3.0 Consensus size: 156
16198700 GTTGTGTGTT
* * * * *
16198710 CATGTTTGAGGAGAGAGAAAATTAGGTTAATGTTTGAAATC-GAGAGAAAAAGGTATGAATATCA
1 CATGTTTGAGGAGAGAGAAAATAATGTTAAAGTTTTAAATCAG-GAGAACAA-GTATGAATATCA
* *
16198774 AGGTTTCATAATGTTTTCAAGTTTAATCTTGTTGGAAAATTATAGAATTGATGTTGAAGTAAAGA
64 AGGTTTCATTATGTTTTCAAGTTTAATCTTGTTGGAAAATTATAGAAATGATGTTGAAGTAAAGA
* *
16198839 TTTCACTTGGAAATTTTTATGTTTTTGA
129 TTTCTCATGGAAATTTTTATGTTTTTGA
*
16198867 CATGTTTGAGGAGAGAGAAAATAATGCTAAAGTTTTAAATCAGGAGAACAATGTATGAATATCAA
1 CATGTTTGAGGAGAGAGAAAATAATGTTAAAGTTTTAAATCAGGAGAACAA-GTATGAATATCAA
* *
16198932 GGTTACATTATGTTTTTAAGTTTAATCTTGTTGGAAAATTATAGAAATGATGTTGAAGTAAAGAT
65 GGTTTCATTATGTTTTCAAGTTTAATCTTGTTGGAAAATTATAGAAATGATGTTGAAGTAAAGAT
*
16198997 TTCTCATGGAAAGTTTTATGTTTTTGA
130 TTCTCATGGAAATTTTTATGTTTTTGA
* * *
16199024 CATGTTTGAGGAGAGAGAAAATCATGTTAAGGTTTTAAATCAAGAGAACAAGATATGAATATCAA
1 CATGTTTGAGGAGAGAGAAAATAATGTTAAAGTTTTAAATCAGGAGAACAAG-TATGAATATCAA
16199089 GGTTTCATTATGTTTTCAAGTTTAATCTTGTTGGAAAATTATAGAAATGATGTTGAAGTAAAGAT
65 GGTTTCATTATGTTTTCAAGTTTAATCTTGTTGGAAAATTATAGAAATGATGTTGAAGTAAAGAT
*
16199154 TTCTCATGGAAAGTTTTTTTGTTTTTGA
130 TTCTCATGGAAA-TTTTTATGTTTTTGA
16199182 ATAAAGAAAT
Statistics
Matches: 290, Mismatches: 22, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
156 1 0.00
157 275 0.95
158 14 0.05
ACGTcount: A:0.36, C:0.06, G:0.21, T:0.38
Consensus pattern (156 bp):
CATGTTTGAGGAGAGAGAAAATAATGTTAAAGTTTTAAATCAGGAGAACAAGTATGAATATCAAG
GTTTCATTATGTTTTCAAGTTTAATCTTGTTGGAAAATTATAGAAATGATGTTGAAGTAAAGATT
TCTCATGGAAATTTTTATGTTTTTGA
Found at i:16202993 original size:95 final size:95
Alignment explanation
Indices: 16202830--16203018 Score: 306
Period size: 95 Copynumber: 2.0 Consensus size: 95
16202820 TCATGTCTTG
* * *
16202830 AGACATATTGGACTTTGTCTCGGGACATAAATCCTTTTGTTGAGACATTCAAGCTTTTGTCTCGA
1 AGACATATTGGACTTTGTCTCGAGACATAAATCCCTTTGTTGAGACATTCAAGCTCTTGTCTCGA
* *
16202895 GACAAATAAACTTAGAACTAAAATTTTTTT
66 GACAAATAAACCTAGAACTAAAAGTTTTTT
16202925 AGACATATTGGACTTTGTCTCGAGACATAAATCCCTTTGTTGAGACATTCAAGCTCTTGTCTCGA
1 AGACATATTGGACTTTGTCTCGAGACATAAATCCCTTTGTTGAGACATTCAAGCTCTTGTCTCGA
* * *
16202990 GACAGATAGACCTAGAACTGAAAGTTTTT
66 GACAAATAAACCTAGAACTAAAAGTTTTT
16203019 AATTTAGCCA
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
95 86 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (95 bp):
AGACATATTGGACTTTGTCTCGAGACATAAATCCCTTTGTTGAGACATTCAAGCTCTTGTCTCGA
GACAAATAAACCTAGAACTAAAAGTTTTTT
Found at i:16213215 original size:16 final size:16
Alignment explanation
Indices: 16213194--16213225 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
16213184 ATTTTGTTGC
*
16213194 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
16213210 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
16213226 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:16213422 original size:46 final size:44
Alignment explanation
Indices: 16213355--16213443 Score: 117
Period size: 46 Copynumber: 2.0 Consensus size: 44
16213345 AACAGATACA
*
16213355 CGGTGGATTCAGCACACAGCAACCACCCTTTGTAATCAATGATATC
1 CGGTGGATTCAGCACACAGCAACCA-CC-TTATAATCAATGATATC
* *
16213401 CGGTGGGA-TCAGCACATAGCAACCACCTTATAATTAATGATAT
1 CGGT-GGATTCAGCACACAGCAACCACCTTATAATCAATGATAT
16213444 TGGTTCACAT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
44 14 0.36
45 2 0.05
46 20 0.51
47 3 0.08
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.25
Consensus pattern (44 bp):
CGGTGGATTCAGCACACAGCAACCACCTTATAATCAATGATATC
Found at i:16213516 original size:51 final size:51
Alignment explanation
Indices: 16213453--16213643 Score: 217
Period size: 51 Copynumber: 3.8 Consensus size: 51
16213443 TTGGTTCACA
* * * *
16213453 TAGTAGCCTGCACATAGTGCTACACATGTGAACATCACTATCCGATACACG
1 TAGTAGCCTACACATAGTACTACACATGTGACCATCACTATCCGGTACACG
* * * * * * *
16213504 TAGTAGCTTGCACATAGTACTACACACGTGATCA-AAGCTATCCGGTACGCA
1 TAGTAGCCTACACATAGTACTACACATGTGACCATCA-CTATCCGGTACACG
* * *
16213555 TAGTAGCCTACACATACTACTACACATGCGACCTATCA-T-TCTGGTACACG
1 TAGTAGCCTACACATAGTACTACACATGTGACC-ATCACTATCCGGTACACG
16213605 TAGTAGCCTACACATAGTACTACACATGTGACCATCACT
1 TAGTAGCCTACACATAGTACTACACATGTGACCATCACT
16213644 TTCACTTTCA
Statistics
Matches: 116, Mismatches: 20, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
49 4 0.03
50 41 0.35
51 69 0.59
52 1 0.01
53 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (51 bp):
TAGTAGCCTACACATAGTACTACACATGTGACCATCACTATCCGGTACACG
Found at i:16213619 original size:101 final size:102
Alignment explanation
Indices: 16213451--16213635 Score: 257
Period size: 101 Copynumber: 1.8 Consensus size: 102
16213441 TATTGGTTCA
* * * * * *
16213451 CATAGTAGCCTGCACATAGTGCTACACATGTGAACATCACTATCCGATACACGTAGTAGCTTGCA
1 CATAGTAGCCTACACATACTACTACACATGCGAACATCACTATCCGATACACGTAGTAGCCTACA
16213516 CATAGTACTACACACGTGATCAAAGCTATCCGGTACG
66 CATAGTACTACACACGTGATCAAAGCTATCCGGTACG
* * *
16213553 CATAGTAGCCTACACATACTACTACACATGCGACCTATCA-T-TCTGGTACACGTAGTAGCCTAC
1 CATAGTAGCCTACACATACTACTACACATGCGAAC-ATCACTATCCGATACACGTAGTAGCCTAC
*
16213616 ACATAGTACTACACATGTGA
65 ACATAGTACTACACACGTGA
16213636 CCATCACTTT
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
101 37 0.51
102 31 0.43
103 4 0.06
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (102 bp):
CATAGTAGCCTACACATACTACTACACATGCGAACATCACTATCCGATACACGTAGTAGCCTACA
CATAGTACTACACACGTGATCAAAGCTATCCGGTACG
Found at i:16218125 original size:18 final size:18
Alignment explanation
Indices: 16218102--16218137 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
16218092 TGCACACTCA
16218102 CACTTATCA-TGTTCATAT
1 CACTTATCACT-TTCATAT
16218120 CACTTATCACTTTCATAT
1 CACTTATCACTTTCATAT
16218138 AATGCACTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 16 0.94
19 1 0.06
ACGTcount: A:0.28, C:0.25, G:0.03, T:0.44
Consensus pattern (18 bp):
CACTTATCACTTTCATAT
Found at i:16229124 original size:93 final size:93
Alignment explanation
Indices: 16228965--16229240 Score: 489
Period size: 93 Copynumber: 3.0 Consensus size: 93
16228955 AATTTGAAAT
* * *
16228965 TGCTACTATCACTAAAGGGGGCATAACAATGTTGATGAACAAATTGCATCCAAAGTTGAAGGACC
1 TGCTACTGTCACTAAAGGGGGCACAACAATGTTGATGAACAAATTGCGTCCAAAGTTGAAGGACC
16229030 CAAGGAGTTCTATATCCCTTATTCATAC
66 CAAGGAGTTCTATATCCCTTATTCATAC
16229058 TGCTACTGTCACTAAAGGGGGCACAACAATGTTGATGAACAAATTGCGTCCAAAGTTGAAGGACC
1 TGCTACTGTCACTAAAGGGGGCACAACAATGTTGATGAACAAATTGCGTCCAAAGTTGAAGGACC
16229123 CAAGGAGTTCTATATCCCTTATTCATAC
66 CAAGGAGTTCTATATCCCTTATTCATAC
* *
16229151 TGCTATTGTCTCTAAAGGGGGCACAACAATGTTGATGAACAAATTGCGTCCAAAGTTGAAGGACC
1 TGCTACTGTCACTAAAGGGGGCACAACAATGTTGATGAACAAATTGCGTCCAAAGTTGAAGGACC
* *
16229216 CATGGAATTCTATATCCCTTATTCA
66 CAAGGAGTTCTATATCCCTTATTCA
16229241 ATTGGAAATC
Statistics
Matches: 176, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 176 1.00
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.27
Consensus pattern (93 bp):
TGCTACTGTCACTAAAGGGGGCACAACAATGTTGATGAACAAATTGCGTCCAAAGTTGAAGGACC
CAAGGAGTTCTATATCCCTTATTCATAC
Found at i:16230387 original size:23 final size:23
Alignment explanation
Indices: 16230361--16230404 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
16230351 TAAGGAAAGT
16230361 ATGCAGCTGGACATTCATGCATA
1 ATGCAGCTGGACATTCATGCATA
* *
16230384 ATGCGGTTGGACATTCATGCA
1 ATGCAGCTGGACATTCATGCA
16230405 CATTGCCAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (23 bp):
ATGCAGCTGGACATTCATGCATA
Found at i:16232691 original size:12 final size:12
Alignment explanation
Indices: 16232676--16232717 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
16232666 AAAAGTTGAG
16232676 AGAAAATAAACA
1 AGAAAATAAACA
*
16232688 AGAAAA-AAAGA
1 AGAAAATAAACA
*
16232699 ATGAAAATGAACA
1 A-GAAAATAAACA
16232712 AGAAAA
1 AGAAAA
16232718 GAAAAATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
11 5 0.20
12 16 0.64
13 4 0.16
ACGTcount: A:0.74, C:0.05, G:0.14, T:0.07
Consensus pattern (12 bp):
AGAAAATAAACA
Found at i:16232731 original size:24 final size:24
Alignment explanation
Indices: 16232678--16232733 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 24
16232668 AAGTTGAGAG
* *
16232678 AAAATAAACAAGAAAAAAAGAATG
1 AAAATGAACAAGAAAAAAAGAATA
16232702 AAAATGAACAAGAAAAGAAA-AATA
1 AAAATGAACAAGAAAA-AAAGAATA
16232726 AAAATGAA
1 AAAATGAA
16232734 AAAAATTGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 26 0.90
25 3 0.10
ACGTcount: A:0.75, C:0.04, G:0.12, T:0.09
Consensus pattern (24 bp):
AAAATGAACAAGAAAAAAAGAATA
Found at i:16238405 original size:19 final size:20
Alignment explanation
Indices: 16238371--16238409 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
16238361 GATTAATATT
*
16238371 AGTTAATATTTTATTAATTA
1 AGTTAATATTTAATTAATTA
16238391 AGTTAAT-TTTAATTAATTA
1 AGTTAATATTTAATTAATTA
16238410 TAAACTAACC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (20 bp):
AGTTAATATTTAATTAATTA
Found at i:16242116 original size:22 final size:20
Alignment explanation
Indices: 16242082--16242139 Score: 71
Period size: 20 Copynumber: 2.8 Consensus size: 20
16242072 ATGCTAACAG
*
16242082 AGGCACCGTAGTGCAAATACAA
1 AGGCACCGAAGTGCAAAT--AA
* *
16242104 AGGCACTGAAGTGCAAATAT
1 AGGCACCGAAGTGCAAATAA
16242124 AGGCACCGAAGTGCAA
1 AGGCACCGAAGTGCAA
16242140 TCCCGTACAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
20 16 0.50
22 16 0.50
ACGTcount: A:0.40, C:0.21, G:0.26, T:0.14
Consensus pattern (20 bp):
AGGCACCGAAGTGCAAATAA
Found at i:16245659 original size:27 final size:27
Alignment explanation
Indices: 16245628--16245684 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
16245618 TTGAATTAGT
16245628 TTAGTTAATTT-GATTTCAATTTATTTG
1 TTAGTTAATTTGGATTT-AATTTATTTG
* * *
16245655 TTAGTTAGTTTGGCTTTAGTTTATTTG
1 TTAGTTAATTTGGATTTAATTTATTTG
16245682 TTA
1 TTA
16245685 CAAATTATGT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 22 0.85
28 4 0.15
ACGTcount: A:0.21, C:0.04, G:0.16, T:0.60
Consensus pattern (27 bp):
TTAGTTAATTTGGATTTAATTTATTTG
Found at i:16251288 original size:363 final size:363
Alignment explanation
Indices: 16250623--16251712 Score: 2171
Period size: 363 Copynumber: 3.0 Consensus size: 363
16250613 TTAGAGTAGT
16250623 TCAAGATAGTGCATCAATTATTTCAAATTTTGCTTTAATCAGGAGGATCCAATGCCTTTTGTCTC
1 TCAAGATAGTGCATCAATTATTTCAAATTTTGCTTTAATCAGGAGGATCCAATGCCTTTTGTCTC
16250688 ATGAAGATCAGTGACTTTTAAGACATATACCTAGGGAACACAACCATGTTGCGGATGCTTTAGCC
66 ATGAAGATCAGTGACTTTTAAGACATATACCTAGGGAACACAACCATGTTGCGGATGCTTTAGCC
16250753 AAATTGACTTTCGAAAGAAAGGAAGACTTGTAGATACTTCATTTTCTTATTAGGGAGATTCAAGT
131 AAATTGACTTTCGAAAGAAAGGAAGACTTGTAGATACTTCATTTTCTTATTAGGGAGATTCAAGT
16250818 AATCCTAGATGCAGATAGAGCTAAAAGTGTTTTATTTCAGAATGCACCCATGTAACTAGTTGTTT
196 AATCCTAGATGCAGATAGAGCTAAAAGTGTTTTATTTCAGAATGCACCCATGTAACTAGTTGTTT
*
16250883 ATCTTGCTCTAATCACCAAAAAAAATGTGTTTAGAATTTTAACTGAAGTTATATACTTACATGAA
261 ATCTTGCTCTAATCACCAAAAAAAATGTGTTTAGAATTTTAACCGAAGTTATATACTTACATGAA
16250948 TGCTTTTATTGATGGAATTTGTTGTTTTTCTTCTATTC
326 TGCTTTTATTGATGGAATTTGTTGTTTTTCTTCTATTC
16250986 TCAAGATAGTGCATCAATTATTTCAAATTTTGCTTTAATCAGGAGGATCCAATGCCTTTTGTCTC
1 TCAAGATAGTGCATCAATTATTTCAAATTTTGCTTTAATCAGGAGGATCCAATGCCTTTTGTCTC
16251051 ATGAAGATCAGTGACTTTTAAGACATATACCTAGGGAACACAACCATGTTGCGGATGCTTTAGCC
66 ATGAAGATCAGTGACTTTTAAGACATATACCTAGGGAACACAACCATGTTGCGGATGCTTTAGCC
16251116 AAATTGACTTTCGAAAGAAAGGAAGACTTGTAGATACTTCATTTTCTTATTAGGGAGATTCAAGT
131 AAATTGACTTTCGAAAGAAAGGAAGACTTGTAGATACTTCATTTTCTTATTAGGGAGATTCAAGT
16251181 AATCCTAGATGCAGATAGAGCTAAAAGTGTTTTATTTCAGAATGCACCCATGTAACTAGTTGTTT
196 AATCCTAGATGCAGATAGAGCTAAAAGTGTTTTATTTCAGAATGCACCCATGTAACTAGTTGTTT
16251246 ATCTTGCTCTAATCACCAAAAAAAATGTGTTTAGAATTTTAACCGAAGTTATATACTTACATGAA
261 ATCTTGCTCTAATCACCAAAAAAAATGTGTTTAGAATTTTAACCGAAGTTATATACTTACATGAA
16251311 TGCTTTTATTGATGGAATTTGTTGTTTTTCTTCTATTC
326 TGCTTTTATTGATGGAATTTGTTGTTTTTCTTCTATTC
16251349 TCAAGATAGTGCATCAATTATTTCAAATTTTGCTTTAATCAGGAGGATCCAATGCCTTTTGTCTC
1 TCAAGATAGTGCATCAATTATTTCAAATTTTGCTTTAATCAGGAGGATCCAATGCCTTTTGTCTC
16251414 ATGAAGATCAGTGACTTTTAAGACATATACCTAGGGAACACAACCATGTTGCGGATGCTTTAGCC
66 ATGAAGATCAGTGACTTTTAAGACATATACCTAGGGAACACAACCATGTTGCGGATGCTTTAGCC
16251479 AAATTGACTTTCGAAAGAAAGGAAGACTTGTAGATACTTCATTTTCTTATTAGGGAGATTCAAGT
131 AAATTGACTTTCGAAAGAAAGGAAGACTTGTAGATACTTCATTTTCTTATTAGGGAGATTCAAGT
16251544 AATCCTAGATGCAGATAGAGCTAAAAGTGTTTTATTTCAGAATGCACCCATGTAACTAGTTGTTT
196 AATCCTAGATGCAGATAGAGCTAAAAGTGTTTTATTTCAGAATGCACCCATGTAACTAGTTGTTT
16251609 ATCTTGCTCTAATCACCAAAAAAAATGTGTTTAGAATTTTAACCGAAGTTATATACTTACATGAA
261 ATCTTGCTCTAATCACCAAAAAAAATGTGTTTAGAATTTTAACCGAAGTTATATACTTACATGAA
16251674 TGCTTTTATTGATGGAATTTGTTGTTTTTCTTCTATTC
326 TGCTTTTATTGATGGAATTTGTTGTTTTTCTTCTATTC
16251712 T
1 T
16251713 TTTTCCTCTA
Statistics
Matches: 726, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
363 726 1.00
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.36
Consensus pattern (363 bp):
TCAAGATAGTGCATCAATTATTTCAAATTTTGCTTTAATCAGGAGGATCCAATGCCTTTTGTCTC
ATGAAGATCAGTGACTTTTAAGACATATACCTAGGGAACACAACCATGTTGCGGATGCTTTAGCC
AAATTGACTTTCGAAAGAAAGGAAGACTTGTAGATACTTCATTTTCTTATTAGGGAGATTCAAGT
AATCCTAGATGCAGATAGAGCTAAAAGTGTTTTATTTCAGAATGCACCCATGTAACTAGTTGTTT
ATCTTGCTCTAATCACCAAAAAAAATGTGTTTAGAATTTTAACCGAAGTTATATACTTACATGAA
TGCTTTTATTGATGGAATTTGTTGTTTTTCTTCTATTC
Found at i:16252648 original size:30 final size:30
Alignment explanation
Indices: 16252595--16252662 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
16252585 TTCCGATAAC
* *
16252595 ATAATTAATGTTAAAATGTTTTCTCA-TACT
1 ATAATTAATGATAAAATGCTTTCTCATTA-T
*
16252625 ATAATTAAT-ATAAACATGCTTTCTTATTAT
1 ATAATTAATGATAAA-ATGCTTTCTCATTAT
16252655 ATAATTAA
1 ATAATTAA
16252663 AAAAAGTTGT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 4 0.12
30 27 0.82
31 2 0.06
ACGTcount: A:0.41, C:0.09, G:0.04, T:0.46
Consensus pattern (30 bp):
ATAATTAATGATAAAATGCTTTCTCATTAT
Found at i:16252884 original size:11 final size:12
Alignment explanation
Indices: 16252864--16252889 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
16252854 AATATTTTTT
16252864 AAATTAAAAAAA
1 AAATTAAAAAAA
16252876 AAATTAAAAAAA
1 AAATTAAAAAAA
16252888 AA
1 AA
16252890 GGTCGGGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (12 bp):
AAATTAAAAAAA
Found at i:16258281 original size:42 final size:42
Alignment explanation
Indices: 16258233--16258331 Score: 126
Period size: 42 Copynumber: 2.4 Consensus size: 42
16258223 AAAATGGGTT
* *
16258233 TGCTCACACAAGCTGCCGGTAAGAATGTAAGCTATACGATGC
1 TGCTCACACAAGCTGCCAGTAAGAATGTAAGCTACACGATGC
*** ** *
16258275 TGCTCACACAAGCTATTAGTCGGAATGTAAGCTACATGATGC
1 TGCTCACACAAGCTGCCAGTAAGAATGTAAGCTACACGATGC
16258317 TGCTCACACAAGCTG
1 TGCTCACACAAGCTG
16258332 TCAAGTATCC
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.23
Consensus pattern (42 bp):
TGCTCACACAAGCTGCCAGTAAGAATGTAAGCTACACGATGC
Found at i:16263710 original size:15 final size:16
Alignment explanation
Indices: 16263674--16263711 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
16263664 TACATGTCAG
16263674 TATTTTTCAAATTTAA
1 TATTTTTCAAATTTAA
16263690 TATTTTTCAAATTTAA
1 TATTTTTCAAATTTAA
16263706 T-TTTTT
1 TATTTTT
16263712 ATATTACATA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (16 bp):
TATTTTTCAAATTTAA
Found at i:16269712 original size:48 final size:48
Alignment explanation
Indices: 16269641--16269755 Score: 144
Period size: 48 Copynumber: 2.4 Consensus size: 48
16269631 AAAAATTTTA
* *
16269641 ATTTAAAAGAGTTTTAGATAAATAATAATAAACATAATTT-AATTATT
1 ATTTAAAAGAGTTTTAAATAAATAATAATAAACAGAATTTCAATTATT
* * *
16269688 ATTTTAAAA-AGTTTTAAATAAAATATTATTAAATAGAATTTCAATTATT
1 A-TTTAAAAGAGTTTTAAAT-AAATAATAATAAACAGAATTTCAATTATT
16269737 ATTTAAAAGAGGTTTTAAA
1 ATTTAAAAGA-GTTTTAAA
16269756 ATTTAGGATA
Statistics
Matches: 58, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
47 10 0.17
48 31 0.53
49 9 0.16
50 8 0.14
ACGTcount: A:0.50, C:0.02, G:0.07, T:0.42
Consensus pattern (48 bp):
ATTTAAAAGAGTTTTAAATAAATAATAATAAACAGAATTTCAATTATT
Found at i:16270987 original size:18 final size:19
Alignment explanation
Indices: 16270964--16271009 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 19
16270954 CGGTGTGTTT
16270964 ATTAAATATGTTT-CATGA
1 ATTAAATATGTTTGCATGA
16270982 ATTAAAT-T-TTTGCATGA
1 ATTAAATATGTTTGCATGA
*
16270999 CTTGAAATATG
1 ATT-AAATATG
16271010 GTGATTGTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
16 3 0.13
17 8 0.35
18 11 0.48
19 1 0.04
ACGTcount: A:0.37, C:0.07, G:0.13, T:0.43
Consensus pattern (19 bp):
ATTAAATATGTTTGCATGA
Found at i:16271106 original size:17 final size:17
Alignment explanation
Indices: 16271084--16271120 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
16271074 AGGATAAAAG
16271084 TATGTCCTTGTTATTGA
1 TATGTCCTTGTTATTGA
16271101 TATGTCCTTGTTATTGA
1 TATGTCCTTGTTATTGA
16271118 TAT
1 TAT
16271121 ATGGAAAGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.19, C:0.11, G:0.16, T:0.54
Consensus pattern (17 bp):
TATGTCCTTGTTATTGA
Found at i:16271730 original size:6 final size:6
Alignment explanation
Indices: 16271719--16271744 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
16271709 TATTTAAAGT
16271719 TTTAAA TTTAAA TTTAAA TTTAAA TT
1 TTTAAA TTTAAA TTTAAA TTTAAA TT
16271745 AATTTTTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:16273514 original size:19 final size:19
Alignment explanation
Indices: 16273462--16273518 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 19
16273452 TAGGAAACAA
*
16273462 ACAAAAGA-AAGAAATATG
1 ACAAAAGAGAAGAAATGTG
* * *
16273480 -GAAAAGTGAAAAAAATGTG
1 ACAAAAGAG-AAGAAATGTG
16273499 ACAAAAGAGAAGAAATGTG
1 ACAAAAGAGAAGAAATGTG
16273518 A
1 A
16273519 AAAGGGGGAG
Statistics
Matches: 29, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
17 5 0.17
19 18 0.62
20 6 0.21
ACGTcount: A:0.61, C:0.04, G:0.23, T:0.12
Consensus pattern (19 bp):
ACAAAAGAGAAGAAATGTG
Found at i:16296037 original size:40 final size:40
Alignment explanation
Indices: 16295980--16296210 Score: 255
Period size: 40 Copynumber: 5.8 Consensus size: 40
16295970 AATTATTGTA
* * *
16295980 TAAATGCACATACGTGCCCCTATTTGTACTCCGGTACCCT
1 TAAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * **
16296020 TAAATGCCCATATGTGCCTTTGTTTGTACTTCGGTACCCC
1 TAAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * *
16296060 TAAATGCACATATGTGGCCCTGTTTGTACTTCAGTACCCT
1 TAAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * * *
16296100 TGAATGCACATATGTGCCCCTGTTCGTACTTTGATACCCC
1 TAAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
* * * * **
16296140 TGAATGCACATACATGTCCCTATTTGTACTTCAATACCCC
1 TAAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
*
16296180 TGAATGCACATACGTGCCCCTGTTTGTACTT
1 TAAATGCACATACGTGCCCCTGTTTGTACTT
16296211 TAATACTCCT
Statistics
Matches: 161, Mismatches: 30, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 161 1.00
ACGTcount: A:0.22, C:0.29, G:0.16, T:0.34
Consensus pattern (40 bp):
TAAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
Found at i:16296211 original size:80 final size:80
Alignment explanation
Indices: 16295982--16296233 Score: 306
Period size: 80 Copynumber: 3.1 Consensus size: 80
16295972 TTATTGTATA
* * * * **
16295982 AATGCACATACGTGCCCCTATTTGTACTCCGGTACCCTTAAATGCCCATATGTGCCTTTGTTTGT
1 AATGCACATACGTGCCCCTATTTGTACTTCAGTACCCTTGAATGCACATATGTGCCCCTGTTTGT
* * *
16296047 ACTTCGGTACCCCTA
66 ACTTTGATACCCCTG
* * * *
16296062 AATGCACATATGTGGCCCTGTTTGTACTTCAGTACCCTTGAATGCACATATGTGCCCCTGTTCGT
1 AATGCACATACGTGCCCCTATTTGTACTTCAGTACCCTTGAATGCACATATGTGCCCCTGTTTGT
16296127 ACTTTGATACCCCTG
66 ACTTTGATACCCCTG
* * * * *
16296142 AATGCACATACATGTCCCTATTTGTACTTCAATACCCCTGAATGCACATACGTGCCCCTGTTTGT
1 AATGCACATACGTGCCCCTATTTGTACTTCAGTACCCTTGAATGCACATATGTGCCCCTGTTTGT
* *
16296207 ACTTTAATACTCCTG
66 ACTTTGATACCCCTG
*
16296222 AAGGCAACATAC
1 AATGC-ACATAC
16296234 TTGCTGTTGA
Statistics
Matches: 147, Mismatches: 24, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
80 141 0.96
81 6 0.04
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.33
Consensus pattern (80 bp):
AATGCACATACGTGCCCCTATTTGTACTTCAGTACCCTTGAATGCACATATGTGCCCCTGTTTGT
ACTTTGATACCCCTG
Found at i:16304472 original size:40 final size:38
Alignment explanation
Indices: 16304406--16304556 Score: 167
Period size: 40 Copynumber: 3.8 Consensus size: 38
16304396 AATTATTGTA
* *
16304406 TGAATGCACATATGTGCCCCTATTTGTACTTCGATAGCCC
1 TGAATGCACATACGTGCCCCTGTTTGTACTT-GATA-CCC
* * ** *
16304446 TGAATACACACACGTGCTTCTGTTTGTACTATGGTACCCC
1 TGAATGCACATACGTGCCCCTGTTTGTACT-TGATA-CCC
16304486 TGAATGCACATACGTGCCCCTGTTTGTACCTTGATACCC
1 TGAATGCACATACGTGCCCCTGTTTGTA-CTTGATACCC
* *
16304525 TTGAATGCGCATATGTGCCCCTGTTTGTACTT
1 -TGAATGCACATACGTGCCCCTGTTTGTACTT
16304557 CGGTACTCCT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 6 0.06
40 84 0.90
41 3 0.03
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.34
Consensus pattern (38 bp):
TGAATGCACATACGTGCCCCTGTTTGTACTTGATACCC
Done.