Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 63 of 196
Found at i:17969658 original size:24 final size:24
Alignment explanation
Indices: 17969628--17969674 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
17969618 TGTACATATA
17969628 TATATTTTTAAACGAATATTTTCC
1 TATATTTTTAAACGAATATTTTCC
* *
17969652 TATATTTTTTAATGAATATTTTC
1 TATATTTTTAAACGAATATTTTC
17969675 ATATTTATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.32, C:0.09, G:0.04, T:0.55
Consensus pattern (24 bp):
TATATTTTTAAACGAATATTTTCC
Found at i:17978721 original size:20 final size:20
Alignment explanation
Indices: 17978693--17978731 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
17978683 AATATTTCTC
17978693 CTAA-ATTTTAATTTTATTAT
1 CTAATATTTTAA-TTTATTAT
*
17978713 CTAATTTTTTAATTTATTA
1 CTAATATTTTAATTTATTA
17978732 AATTATTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (20 bp):
CTAATATTTTAATTTATTAT
Found at i:17989524 original size:142 final size:143
Alignment explanation
Indices: 17989266--17989531 Score: 392
Period size: 142 Copynumber: 1.9 Consensus size: 143
17989256 GTCAAAACCT
* * *
17989266 ACCTCACTTGGCTATCCGTAATTGTTGGTGCAAGTCACGTGCCATGGAAAAACTATTTAGGGGTC
1 ACCTCACTTGGCTATCCGTAATTATTGGTGCAAGTCACGTGCCATGG-AAAACTATCTAAGGGTC
* *
17989331 TACTTCTATAAGTCCGCAAGTAAGAATCTACAAGGATTACCTCTCAAGGAAGTAATTGCGCAGGA
65 TACTTCCATAAGTCCGCAAGTAAGAATCCACAAGGATTACCTCTCAAGGAAGTAATTGCGCAGGA
17989396 GTTCACCAAGACCC
130 GTTCACCAAGACCC
* * ** * *
17989410 ACCTCACTTGGTTATCCGT-ATCTATTGGTGCAAGTGACGTGCTGTGG-GAATTATCTAAGGGTC
1 ACCTCACTTGGCTATCCGTAAT-TATTGGTGCAAGTCACGTGCCATGGAAAACTATCTAAGGGTC
*
17989473 TTCTTCCATAAGTCCGCAAGTAAGAATCCACAAGGATTACCTCTCAAGGAAGTAATTGC
65 TACTTCCATAAGTCCGCAAGTAAGAATCCACAAGGATTACCTCTCAAGGAAGTAATTGC
17989532 ACAAGACTCC
Statistics
Matches: 109, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
142 68 0.62
143 2 0.02
144 39 0.36
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (143 bp):
ACCTCACTTGGCTATCCGTAATTATTGGTGCAAGTCACGTGCCATGGAAAACTATCTAAGGGTCT
ACTTCCATAAGTCCGCAAGTAAGAATCCACAAGGATTACCTCTCAAGGAAGTAATTGCGCAGGAG
TTCACCAAGACCC
Found at i:17994580 original size:141 final size:141
Alignment explanation
Indices: 17994292--17994580 Score: 352
Period size: 141 Copynumber: 2.0 Consensus size: 141
17994282 AACTATTCGT
* *
17994292 CAAGACCTCACTCACTTGGCTATCTATACCTGTTGCTGAAAGTCACGTGCCATGGGAATTATTTA
1 CAAGACCTCACTCACTTAGCTATCTATA-CTGTTGCTGAAAGTCACGTGCCATGGGAATTATCTA
** *
17994357 GGGGTCTTCTTCCATAAATCCGCAAGTAAGAATCTGCAAGGATTACCTCTCAAGGAAGTAATTGT
65 GGGGTCTTCTTCCATAAATCCGCAAGTAAGAATCCCCAAGGATTACCTCTCAAGGAAGTAATTAT
* * *
17994422 GTAGGATTTCAC
130 GCAAGATCTCAC
* * * *
17994434 TAAGACC-CACCTCACTTAGCTATCCTATA-TGTTGGTGCAAGTCACGTGATC-TGGGAATTATC
1 CAAGACCTCA-CTCACTTAGCTAT-CTATACTGTTGCTGAAAGTCACGTG-CCATGGGAATTATC
* * * * *
17994496 TAGGGGTCTTCTTCCATAAGTCGGCAAGTAAGAATCCCCAAGGATTACCTTTTAAGTAAGTAATT
63 TAGGGGTCTTCTTCCATAAATCCGCAAGTAAGAATCCCCAAGGATTACCTCTCAAGGAAGTAATT
17994561 ATGCAAGAGTCT-AC
128 ATGCAAGA-TCTCAC
17994575 CAAGAC
1 CAAGAC
17994581 AACTATTAAA
Statistics
Matches: 125, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
141 99 0.79
142 21 0.17
143 5 0.04
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (141 bp):
CAAGACCTCACTCACTTAGCTATCTATACTGTTGCTGAAAGTCACGTGCCATGGGAATTATCTAG
GGGTCTTCTTCCATAAATCCGCAAGTAAGAATCCCCAAGGATTACCTCTCAAGGAAGTAATTATG
CAAGATCTCAC
Found at i:18001350 original size:14 final size:16
Alignment explanation
Indices: 18001333--18001364 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
18001323 AATTAATATT
18001333 AAAACAT-TAT-TAAA
1 AAAACATATATATAAA
18001347 AAAACATATATATAAA
1 AAAACATATATATAAA
18001363 AA
1 AA
18001365 TAACTACTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 3 0.19
16 6 0.38
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.25
Consensus pattern (16 bp):
AAAACATATATATAAA
Found at i:18001916 original size:22 final size:22
Alignment explanation
Indices: 18001888--18001931 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
18001878 TCGAGTGACT
18001888 TTACACAAAACTAATGAGAGCA
1 TTACACAAAACTAATGAGAGCA
18001910 TTACACAAAACTAATGAGAGCA
1 TTACACAAAACTAATGAGAGCA
18001932 AGGATGGGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.18, G:0.14, T:0.18
Consensus pattern (22 bp):
TTACACAAAACTAATGAGAGCA
Found at i:18007414 original size:46 final size:46
Alignment explanation
Indices: 18007347--18007439 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
18007337 TACTGTGGAG
18007347 TATGGTGAACTGTTAAATGTCTTATGAGCCCTTCTAATTTATAGAA
1 TATGGTGAACTGTTAAATGTCTTATGAGCCCTTCTAATTTATAGAA
18007393 TATGGTGAACTGTTAAATGTCTTATGAGCCCTTCTAATTTATAGAA
1 TATGGTGAACTGTTAAATGTCTTATGAGCCCTTCTAATTTATAGAA
18007439 T
1 T
18007440 TCATTAAACT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (46 bp):
TATGGTGAACTGTTAAATGTCTTATGAGCCCTTCTAATTTATAGAA
Found at i:18017694 original size:13 final size:13
Alignment explanation
Indices: 18017676--18017702 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
18017666 CATGGGATAG
18017676 GCCACACGGGCAT
1 GCCACACGGGCAT
18017689 GCCACACGGGCAT
1 GCCACACGGGCAT
18017702 G
1 G
18017703 AGAGTTTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.37, G:0.33, T:0.07
Consensus pattern (13 bp):
GCCACACGGGCAT
Found at i:18026376 original size:14 final size:15
Alignment explanation
Indices: 18026359--18026388 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
18026349 AATTTCAATA
18026359 TATTTTTAATA-TTT
1 TATTTTTAATACTTT
18026373 TATTTTTAATACTTT
1 TATTTTTAATACTTT
18026388 T
1 T
18026389 TATAATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (15 bp):
TATTTTTAATACTTT
Found at i:18026397 original size:9 final size:9
Alignment explanation
Indices: 18026304--18026438 Score: 55
Period size: 9 Copynumber: 14.9 Consensus size: 9
18026294 AGAATCTTTT
18026304 ATTTTTATA
1 ATTTTTATA
*
18026313 ATATTTATA
1 ATTTTTATA
**
18026322 GGTTTTAT-
1 ATTTTTATA
*
18026330 TTTTTTATA
1 ATTTTTATA
*
18026339 AGTTTATATA
1 A-TTTTTATA
* *
18026349 AATTTCA-A
1 ATTTTTATA
18026357 TATATTTT-TA
1 -AT-TTTTATA
18026367 ATATTTTAT-
1 AT-TTTTATA
*
18026376 -TTTTAATA
1 ATTTTTATA
*
18026384 CTTTTTATA
1 ATTTTTATA
* *
18026393 ATTTTTCTG
1 ATTTTTATA
18026402 ATTTGTTATA
1 ATTT-TTATA
* *
18026412 ATTTTTCTT
1 ATTTTTATA
*
18026421 ATTTTTAATC
1 ATTTTT-ATA
18026431 ATTTTTAT
1 ATTTTTAT
18026439 GAAAAATATT
Statistics
Matches: 92, Mismatches: 24, Indels: 20
0.68 0.18 0.15
Matches are distributed among these distances:
7 5 0.05
8 8 0.09
9 52 0.57
10 27 0.29
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.64
Consensus pattern (9 bp):
ATTTTTATA
Found at i:18026436 original size:19 final size:19
Alignment explanation
Indices: 18026388--18026424 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
18026378 TTAATACTTT
18026388 TTATAATTTTTCTGATTTG
1 TTATAATTTTTCTGATTTG
*
18026407 TTATAATTTTTCTTATTT
1 TTATAATTTTTCTGATTT
18026425 TTAATCATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.05, G:0.05, T:0.68
Consensus pattern (19 bp):
TTATAATTTTTCTGATTTG
Found at i:18030957 original size:101 final size:100
Alignment explanation
Indices: 18030842--18031088 Score: 293
Period size: 101 Copynumber: 2.5 Consensus size: 100
18030832 AAAGTGATGG
* *
18030842 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGAAAT-GTC-TCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATC-GAATGAAATGGTCAT-ATGTGTAGT
* * *
18030905 ACTATATGCAGGCTACTATGCGTACCGGATAGCTTCGA
64 ACTATATGCAGGCTACTACGCGAACCGGAAAG-TTCGA
* * * *
18030943 TCATGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATAT-TAATGGTCATGTGTGTAGT
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATC-GA-ATGAAATGGTCATATGTGTAGT
* * * *
18031007 ACTATGTGCAGGCTACTACGTGAACTGGAAAGTTTGA
64 ACTATATGCAGGCTACTACGCGAACCGGAAAGTTCGA
* *
18031044 TCACATGTGTAATACTATGTGAAGGCTACTACGTGTATCGAATGA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGA
18031089 TAATAGTTAA
Statistics
Matches: 124, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
99 2 0.02
100 2 0.02
101 80 0.65
102 39 0.31
103 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (100 bp):
TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGAAATGGTCATATGTGTAGTAC
TATATGCAGGCTACTACGCGAACCGGAAAGTTCGA
Found at i:18030966 original size:51 final size:50
Alignment explanation
Indices: 18030846--18031080 Score: 219
Period size: 51 Copynumber: 4.7 Consensus size: 50
18030836 TGATGGTCAC
* *
18030846 GTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGAAATGTC--TCA-
1 GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG-AT--AGT-TCGATCAT
* * *
18030897 -TGTGTAGTACTATATGCAGGCTACTATGCGTACCGGATAGCTTCGATCAT
1 GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAG-TTCGATCAT
* * * *
18030947 GTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATA-TTAATGGTCAT
1 GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTT--CGATCAT
* * * * *
18030998 GTGTGTAGTACTATGTGCAGGCTACTACGTGAACTGGAAAGTTTGATCAC
1 GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTTCGATCAT
* * *
18031048 ATGTGTAATACTATGTGAAGGCTACTACGTGTA
1 GTGTGTAGTACTATGTGCAGGCTACTACGTGTA
18031081 TCGAATGATA
Statistics
Matches: 153, Mismatches: 23, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
47 3 0.02
48 1 0.01
49 7 0.05
50 66 0.43
51 74 0.48
52 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (50 bp):
GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTTCGATCAT
Found at i:18031116 original size:101 final size:101
Alignment explanation
Indices: 18030842--18031117 Score: 283
Period size: 101 Copynumber: 2.7 Consensus size: 101
18030832 AAAGTGATGG
* * *
18030842 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGA-AATGTCT-CATGTGTAGT
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATC-GAATGATAATGT-TAAATGTGTAGT
* * * *
18030905 ACTATATGCAGGCTACTATGCGTACCGGATAGCTTCGA
64 ACTATGTGCAGGCTACTACGCGAACCGGAAAGCTTCGA
* * * **
18030943 TCATGTGTGTAGTACTATGTGCAGGCTACTACGTGTATC-AGAT-ATTAATGGTCATGTGTGTAG
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA-ATGA-TAAT-GTTAAATGTGTAG
* * *
18031006 TACTATGTGCAGGCTACTACGTGAACTGGAAAG-TTTGA
63 TACTATGTGCAGGCTACTACGCGAACCGGAAAGCTTCGA
* * * *
18031044 TCACATGTGTAATACTATGTGAAGGCTACTACGTGTATCGAATGATAATAGTTAAATGAGTGGTA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAAT-GTTAAATGTGTAGTA
*
18031109 ATATGTGCA
65 CTATGTGCA
18031118 AACCACCGAA
Statistics
Matches: 144, Mismatches: 24, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
99 2 0.01
100 2 0.01
101 102 0.71
102 38 0.26
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATGTTAAATGTGTAGTAC
TATGTGCAGGCTACTACGCGAACCGGAAAGCTTCGA
Found at i:18039693 original size:13 final size:13
Alignment explanation
Indices: 18039654--18039695 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
18039644 TCATAAGAGC
18039654 TAACACATCATA-
1 TAACACATCATAT
*
18039666 TATCACATGTCATAT
1 TAACACA--TCATAT
18039681 TAACACATCATAT
1 TAACACATCATAT
18039694 TA
1 TA
18039696 CTTAATCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
12 6 0.24
13 8 0.32
14 5 0.20
15 6 0.24
ACGTcount: A:0.43, C:0.21, G:0.02, T:0.33
Consensus pattern (13 bp):
TAACACATCATAT
Found at i:18049441 original size:31 final size:31
Alignment explanation
Indices: 18049398--18049460 Score: 101
Period size: 31 Copynumber: 2.0 Consensus size: 31
18049388 GAGCACAAAG
18049398 CAATATGGGCAATTAAG-CAAGTGAACATGGA
1 CAATATGGGCAATTAAGCCAA-TGAACATGGA
*
18049429 CAATGTGGGCAATTAAGCCAATGAACATGGA
1 CAATATGGGCAATTAAGCCAATGAACATGGA
18049460 C
1 C
18049461 TATGAAGCTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 27 0.90
32 3 0.10
ACGTcount: A:0.40, C:0.16, G:0.25, T:0.19
Consensus pattern (31 bp):
CAATATGGGCAATTAAGCCAATGAACATGGA
Found at i:18052149 original size:17 final size:17
Alignment explanation
Indices: 18052127--18052159 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
18052117 GTTAGTGCAC
*
18052127 ATTGTCATTGCATTTTT
1 ATTGTCATTACATTTTT
18052144 ATTGTCATTACATTTT
1 ATTGTCATTACATTTT
18052160 AATGTTAGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.58
Consensus pattern (17 bp):
ATTGTCATTACATTTTT
Found at i:18055007 original size:61 final size:61
Alignment explanation
Indices: 18054919--18055033 Score: 158
Period size: 61 Copynumber: 1.9 Consensus size: 61
18054909 AATTAATCAC
* * *
18054919 ATTAATATTACATGAATAAAATATTATCAAGATAAATATTAATTTAAATTTAATTCCTCAT
1 ATTAATATTAAATGAATAAAATATTATCAAGATAAATATTAAATTAAAATTAATTCCTCAT
* * * * *
18054980 ATTAATATTAAATTAATACAATGTTATCTAGGTAAATATTAAATTAAAATTAAT
1 ATTAATATTAAATGAATAAAATATTATCAAGATAAATATTAAATTAAAATTAAT
18055034 ATAATACTAT
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
61 46 1.00
ACGTcount: A:0.49, C:0.06, G:0.04, T:0.41
Consensus pattern (61 bp):
ATTAATATTAAATGAATAAAATATTATCAAGATAAATATTAAATTAAAATTAATTCCTCAT
Found at i:18055019 original size:37 final size:37
Alignment explanation
Indices: 18054978--18055071 Score: 102
Period size: 37 Copynumber: 2.5 Consensus size: 37
18054968 TTAATTCCTC
** * *
18054978 ATATTAATATTAAATTAATACAATGTTATCTAGGTAA
1 ATATTAATATTAAATTAATACAATACTATATAGATAA
*
18055015 ATATTAA-ATTAAAATTAATATAATACTATATAGATAA
1 ATATTAATATT-AAATTAATACAATACTATATAGATAA
*
18055052 ATA-TGATATTAAATTTAATA
1 ATATTAATATTAAA-TTAATA
18055072 TTAAATTAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
36 8 0.17
37 40 0.83
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.40
Consensus pattern (37 bp):
ATATTAATATTAAATTAATACAATACTATATAGATAA
Found at i:18074110 original size:30 final size:30
Alignment explanation
Indices: 18074074--18074134 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
18074064 TCAATTGATA
*
18074074 ATTAGCTATGGATTAAAACAAACATGCAAC
1 ATTAGCTATGAATTAAAACAAACATGCAAC
18074104 ATTAGCTATGAATTAAAACAAACATGCAAC
1 ATTAGCTATGAATTAAAACAAACATGCAAC
18074134 A
1 A
18074135 ATCTTGGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.49, C:0.16, G:0.11, T:0.23
Consensus pattern (30 bp):
ATTAGCTATGAATTAAAACAAACATGCAAC
Found at i:18081978 original size:40 final size:40
Alignment explanation
Indices: 18081931--18082012 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
18081921 TTATTAAAGC
18081931 AAGTATATGTTGTTTAGTCTTGATGAATTGTTTTAAAATG
1 AAGTATATGTTGTTTAGTCTTGATGAATTGTTTTAAAATG
18081971 AAGTATATGTTGTTTAGTCTTGATGAATTGTTTTAAAATG
1 AAGTATATGTTGTTTAGTCTTGATGAATTGTTTTAAAATG
18082011 AA
1 AA
18082013 CTATTTGTAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.32, C:0.02, G:0.20, T:0.46
Consensus pattern (40 bp):
AAGTATATGTTGTTTAGTCTTGATGAATTGTTTTAAAATG
Found at i:18085226 original size:45 final size:45
Alignment explanation
Indices: 18085158--18085251 Score: 152
Period size: 45 Copynumber: 2.1 Consensus size: 45
18085148 AACAGATACT
* *
18085158 CGGTGGATTCAGCACATAACAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAACAACCACCTTACTAATCAATGATGTC
* *
18085203 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTT
1 CGGTGGAATCAGCACATAACAACCACCTTACTAATCAATGATGTC
18085248 CGGT
1 CGGT
18085252 TCACATAGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAACAACCACCTTACTAATCAATGATGTC
Found at i:18085320 original size:51 final size:50
Alignment explanation
Indices: 18085257--18085443 Score: 207
Period size: 51 Copynumber: 3.7 Consensus size: 50
18085247 TCGGTTCACA
* *
18085257 TAGTAGCTTGCACATAGTACTACACATGTGACCATTACCATCC-GATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCATCCAG-TACACG
* * * * * *
18085308 TAGTATCCTGCACATAGTACTACACACGTGATCGAAACTATCCAGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATCCAGTACACG
* * * * *
18085359 TAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCTAGTATACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATACCA-TCCAGTACACG
18085409 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
18085444 CACTTTCACT
Statistics
Matches: 111, Mismatches: 21, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
49 2 0.02
50 39 0.35
51 67 0.60
52 3 0.03
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATACCATCCAGTACACG
Found at i:18085435 original size:101 final size:101
Alignment explanation
Indices: 18085255--18085439 Score: 282
Period size: 101 Copynumber: 1.8 Consensus size: 101
18085245 GTTCGGTTCA
* * *
18085255 CATAGTAGCTTGCACATAGTACTACACATGTGACCATTACCATCCGATACACGTAGTATCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCA-TACCATCCGATACACGTAGTAGCCTGCA
18085320 CATAGTACTACACACGTGATCGAAACTATCCAGTACG
65 CATAGTACTACACACGTGATCGAAACTATCCAGTACG
* * * *
18085357 CATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCTAGTATACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATACCATCCGA-TACACGTAGTAGCCTGCA
18085421 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
18085440 CCATCACTTT
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
100 7 0.09
101 35 0.47
102 33 0.44
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATACCATCCGATACACGTAGTAGCCTGCAC
ATAGTACTACACACGTGATCGAAACTATCCAGTACG
Found at i:18101822 original size:27 final size:27
Alignment explanation
Indices: 18101766--18101969 Score: 277
Period size: 27 Copynumber: 7.6 Consensus size: 27
18101756 ACCCTCAAAC
* *
18101766 TGTTATAAAATTACTATTACG-CCCTCA
1 TGTTATAAAATGACTATTATGCCCCT-A
**
18101793 TGTGGTAAAATGACTATTATGCCCCTA
1 TGTTATAAAATGACTATTATGCCCCTA
**
18101820 TGTTATAAAATGACGGTTATGCCCCTA
1 TGTTATAAAATGACTATTATGCCCCTA
*
18101847 TGTTATAAAATGA-TGGTTATGCCCCTA
1 TGTTATAAAATGACT-ATTATGCCCCTA
* * *
18101874 TGTTATAAAATGACAATCATGCTCCTA
1 TGTTATAAAATGACTATTATGCCCCTA
18101901 TGTTATAAAATGACTATTATGCCCCTA
1 TGTTATAAAATGACTATTATGCCCCTA
*
18101928 TATTATAAAATGACTATTATGCCCCTA
1 TGTTATAAAATGACTATTATGCCCCTA
18101955 TGTTATAAAATGACT
1 TGTTATAAAATGACT
18101970 GTATGCTTAA
Statistics
Matches: 156, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
27 152 0.97
28 4 0.03
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (27 bp):
TGTTATAAAATGACTATTATGCCCCTA
Found at i:18103388 original size:13 final size:13
Alignment explanation
Indices: 18103370--18103400 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
18103360 GGGGATGATG
18103370 ACAAAAGAAGATC
1 ACAAAAGAAGATC
18103383 ACAAAAGAAGATC
1 ACAAAAGAAGATC
18103396 ACAAA
1 ACAAA
18103401 GATTATAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.65, C:0.16, G:0.13, T:0.06
Consensus pattern (13 bp):
ACAAAAGAAGATC
Found at i:18105330 original size:21 final size:21
Alignment explanation
Indices: 18105291--18105331 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
18105281 AAGTTAATCA
* * *
18105291 AAAGAATAATAACATATAATG
1 AAAGAAGAATAAAAAATAATG
18105312 AAAGAAGAATAAAAAATAAT
1 AAAGAAGAATAAAAAATAAT
18105332 AGTTAGATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.68, C:0.02, G:0.10, T:0.20
Consensus pattern (21 bp):
AAAGAAGAATAAAAAATAATG
Found at i:18107019 original size:60 final size:62
Alignment explanation
Indices: 18106895--18107028 Score: 186
Period size: 61 Copynumber: 2.2 Consensus size: 62
18106885 TTTTTGAAAA
* * *
18106895 TTTTAGAA-TTAGAACCAAATTGATAAATTTTTGTAAATATTGAGGGTAAATTTATTGAATT
1 TTTTAGAATTTAGAACCAAAATGACAAATTTTTGTAAACATTGAGGGTAAATTTATTGAATT
* *
18106956 TTTTAGAATTTAG-ACTAAAATGACAAA-TTTTGTAAACATTGAGGGCTAAATTTGTTGAATT
1 TTTTAGAATTTAGAACCAAAATGACAAATTTTTGTAAACATTGAGGG-TAAATTTATTGAATT
18107017 TTTTAG-ATTTAG
1 TTTTAGAATTTAG
18107029 GATCAAATTG
Statistics
Matches: 66, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
60 23 0.35
61 39 0.59
62 4 0.06
ACGTcount: A:0.37, C:0.04, G:0.16, T:0.43
Consensus pattern (62 bp):
TTTTAGAATTTAGAACCAAAATGACAAATTTTTGTAAACATTGAGGGTAAATTTATTGAATT
Found at i:18113038 original size:27 final size:27
Alignment explanation
Indices: 18113007--18113112 Score: 167
Period size: 27 Copynumber: 3.9 Consensus size: 27
18112997 TATATGACTG
*
18113007 AAATACCCCCATAGGGTAAAATGATCA
1 AAATACCCCCATAGGGTAAAATGACCA
*
18113034 AAATACCCTCATAGGGTAAAATGACCA
1 AAATACCCCCATAGGGTAAAATGACCA
* *
18113061 AAATACCCCTATAGGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCA
*
18113088 AAATACCCCTATAGGGTAAAATGAC
1 AAATACCCCCATAGGGTAAAATGAC
18113113 TATTATACCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 74 1.00
ACGTcount: A:0.43, C:0.22, G:0.16, T:0.19
Consensus pattern (27 bp):
AAATACCCCCATAGGGTAAAATGACCA
Found at i:18121832 original size:26 final size:26
Alignment explanation
Indices: 18121803--18121866 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 26
18121793 TTTACATTTG
* *
18121803 ATAAAATTTTGACGATTTTGTCCCTA
1 ATAAAATTTTGACGACTTTGCCCCTA
* *
18121829 ATAAAAGTTTGATGACTTTGCCCCTA
1 ATAAAATTTTGACGACTTTGCCCCTA
*
18121855 TTAAAATTTTGA
1 ATAAAATTTTGA
18121867 GAAAATATGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.41
Consensus pattern (26 bp):
ATAAAATTTTGACGACTTTGCCCCTA
Found at i:18122029 original size:12 final size:12
Alignment explanation
Indices: 18122012--18122041 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
18122002 TGCAAATGGA
18122012 TCATTTCCATTT
1 TCATTTCCATTT
18122024 TCATTTCCATTT
1 TCATTTCCATTT
*
18122036 CCATTT
1 TCATTT
18122042 TCTGGAAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.27, G:0.00, T:0.57
Consensus pattern (12 bp):
TCATTTCCATTT
Found at i:18124120 original size:23 final size:25
Alignment explanation
Indices: 18124094--18124146 Score: 83
Period size: 26 Copynumber: 2.2 Consensus size: 25
18124084 GGGATAATAA
18124094 TTTTT-AA-TTAATATTCAACTGAT
1 TTTTTAAAGTTAATATTCAACTGAT
18124117 TTTTTAAAAGTTAATATTCAACTGAT
1 TTTTT-AAAGTTAATATTCAACTGAT
18124143 TTTT
1 TTTT
18124147 AAAACAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
23 5 0.19
25 2 0.07
26 20 0.74
ACGTcount: A:0.34, C:0.08, G:0.06, T:0.53
Consensus pattern (25 bp):
TTTTTAAAGTTAATATTCAACTGAT
Found at i:18124133 original size:26 final size:25
Alignment explanation
Indices: 18124101--18124150 Score: 91
Period size: 26 Copynumber: 2.0 Consensus size: 25
18124091 TAATTTTTAA
18124101 TTAATATTCAACTGATTTTTTAAAAG
1 TTAATATTCAACTGA-TTTTTAAAAG
18124127 TTAATATTCAACTGATTTTTAAAA
1 TTAATATTCAACTGATTTTTAAAA
18124151 CAAATAAGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.46
Consensus pattern (25 bp):
TTAATATTCAACTGATTTTTAAAAG
Found at i:18124156 original size:24 final size:26
Alignment explanation
Indices: 18124103--18124156 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
18124093 ATTTTTAATT
**
18124103 AATATTCAACTGATTTTTTAAAAGTT
1 AATATTCAACTGATTTTTTAAAAGCA
18124129 AATATTCAACTGA-TTTTTAAAA-CA
1 AATATTCAACTGATTTTTTAAAAGCA
18124153 AATA
1 AATA
18124157 AGTATCCACA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 4 0.15
25 9 0.35
26 13 0.50
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (26 bp):
AATATTCAACTGATTTTTTAAAAGCA
Found at i:18136024 original size:25 final size:25
Alignment explanation
Indices: 18135993--18136184 Score: 114
Period size: 25 Copynumber: 7.9 Consensus size: 25
18135983 GTCCTATCTC
18135993 GAGCCATATAACGGGAAGCTCATGT
1 GAGCCATATAACGGGAAGCTCATGT
* * * **
18136018 GAGCCATGTAATGGGAAGCTTATCC
1 GAGCCATATAACGGGAAGCTCATGT
* * **
18136043 GAGCTATATAACGGGAAGCCCATAA
1 GAGCCATATAACGGGAAGCTCATGT
18136068 GAGCC-TA-ATA-GGGAAGCTCATGT
1 GAGCCATATA-ACGGGAAGCTCATGT
* * *
18136091 GAGCC-TATAACGGGTAGCTC-CGAA
1 GAGCCATATAACGGGAAGCTCATG-T
**
18136115 GAGCCA-ATAACCAGAAGCTC-TGAAT
1 GAGCCATATAACGGGAAGCTCATG--T
* * * *
18136140 -AGCCATATATCGGGAAGTTCAAGC
1 GAGCCATATAACGGGAAGCTCATGT
*
18136164 GAGCCA-ATATCGGGAAGCTCA
1 GAGCCATATAACGGGAAGCTCA
18136185 CAAAGAGCCT
Statistics
Matches: 127, Mismatches: 31, Indels: 19
0.72 0.18 0.11
Matches are distributed among these distances:
23 20 0.16
24 48 0.38
25 58 0.46
26 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.27, T:0.19
Consensus pattern (25 bp):
GAGCCATATAACGGGAAGCTCATGT
Found at i:18138577 original size:43 final size:43
Alignment explanation
Indices: 18138524--18138612 Score: 126
Period size: 43 Copynumber: 2.1 Consensus size: 43
18138514 GTTTTATAGG
* *
18138524 TAGTGGCATTTTTA-GTAGAAGTGTCACTAAATGCCATGTTCTT
1 TAGTGGCATTTTTATG-AGAAGTGCCACTAAAGGCCATGTTCTT
* *
18138567 TAGTGGCATTTTTATGAGAAGTGCCACTAAAGGTCATGTTTTT
1 TAGTGGCATTTTTATGAGAAGTGCCACTAAAGGCCATGTTCTT
18138610 TAG
1 TAG
18138613 CGGCGTTTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
43 40 0.98
44 1 0.02
ACGTcount: A:0.26, C:0.12, G:0.22, T:0.39
Consensus pattern (43 bp):
TAGTGGCATTTTTATGAGAAGTGCCACTAAAGGCCATGTTCTT
Found at i:18139035 original size:66 final size:66
Alignment explanation
Indices: 18138908--18139035 Score: 186
Period size: 66 Copynumber: 1.9 Consensus size: 66
18138898 TCTAAAGCTA
* * * *
18138908 TAGCTGGAGTTCGTCATATTTTCTTGTTGCCTCTGCTTCTCTCGCTGCTGCCTCCGCTTTAATTT
1 TAGCTGGAGTTCATCATATTTTCTTGTAGCCTCTGCTTCTCTCGATGCTGCCTCCACTTTAATTT
18138973 G
66 G
* *
18138974 TAGCTGGAGTTCATCATATTTTCTT-TGAGCCTCTGCTTCTCTCGATGCTGCCTTCATTTTAA
1 TAGCTGGAGTTCATCATATTTTCTTGT-AGCCTCTGCTTCTCTCGATGCTGCCTCCACTTTAA
18139036 GCTGAGCAAT
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
65 1 0.02
66 54 0.98
ACGTcount: A:0.12, C:0.26, G:0.18, T:0.44
Consensus pattern (66 bp):
TAGCTGGAGTTCATCATATTTTCTTGTAGCCTCTGCTTCTCTCGATGCTGCCTCCACTTTAATTT
G
Found at i:18159998 original size:30 final size:30
Alignment explanation
Indices: 18159924--18159998 Score: 114
Period size: 30 Copynumber: 2.5 Consensus size: 30
18159914 GCTACAAAGG
*
18159924 ACACACGGCCGTGTAACCTAGCCATGTGTC
1 ACACACGGCCGTGTCACCTAGCCATGTGTC
*
18159954 ACACACCGCCGTGTCACCTAGCCATGTGTC
1 ACACACGGCCGTGTCACCTAGCCATGTGTC
* *
18159984 ACACATGGCTGTGTC
1 ACACACGGCCGTGTC
18159999 TCTGCCCATG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.21, C:0.35, G:0.23, T:0.21
Consensus pattern (30 bp):
ACACACGGCCGTGTCACCTAGCCATGTGTC
Found at i:18161147 original size:25 final size:25
Alignment explanation
Indices: 18161110--18161213 Score: 95
Period size: 25 Copynumber: 4.2 Consensus size: 25
18161100 GTACATGTAT
* * *
18161110 GCTCACACAAGCTGTGAATCGGTAT
1 GCTCTCACAAGCTGTAAATCGGTAA
*
18161135 GCTCTCACGAGCTGTAAATCGGTAA
1 GCTCTCACAAGCTGTAAATCGGTAA
* *
18161160 GCTCAT-ACAAACTG-AGAATCAGTAA
1 GCTC-TCACAAGCTGTA-AATCGGTAA
* * *
18161185 GCTCTCACGAGTTGCAAATCGGTAA
1 GCTCTCACAAGCTGTAAATCGGTAA
18161210 GCTC
1 GCTC
18161214 ATACGAGTTG
Statistics
Matches: 64, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
24 2 0.03
25 60 0.94
26 2 0.03
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (25 bp):
GCTCTCACAAGCTGTAAATCGGTAA
Found at i:18161189 original size:50 final size:50
Alignment explanation
Indices: 18161110--18161217 Score: 153
Period size: 50 Copynumber: 2.2 Consensus size: 50
18161100 GTACATGTAT
* * * * * *
18161110 GCTCACACAAGCTGTGAATCGGTATGCTCTCACGAGCTGTAAATCGGTAA
1 GCTCATACAAACTGAGAATCAGTAAGCTCTCACGAGCTGCAAATCGGTAA
*
18161160 GCTCATACAAACTGAGAATCAGTAAGCTCTCACGAGTTGCAAATCGGTAA
1 GCTCATACAAACTGAGAATCAGTAAGCTCTCACGAGCTGCAAATCGGTAA
18161210 GCTCATAC
1 GCTCATAC
18161218 GAGTTGCGAT
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.23
Consensus pattern (50 bp):
GCTCATACAAACTGAGAATCAGTAAGCTCTCACGAGCTGCAAATCGGTAA
Found at i:18161395 original size:25 final size:25
Alignment explanation
Indices: 18161361--18161473 Score: 106
Period size: 25 Copynumber: 4.5 Consensus size: 25
18161351 TTAGTATACC
* *
18161361 CATACAAGCTATGAATCGGTATGCT
1 CATACGAGCTATGAATCGGTAAGCT
* *
18161386 C-TCACGAGCTATAAATCAGTAAGCT
1 CAT-ACGAGCTATGAATCGGTAAGCT
*
18161411 CATACGAGCTGA-GAATTGGTAAGCT
1 CATACGAGCT-ATGAATCGGTAAGCT
***
18161436 C-TCACGAGCTGCAAATCGGTAAGCT
1 CAT-ACGAGCTATGAATCGGTAAGCT
18161461 CATACGAGCTATG
1 CATACGAGCTATG
18161474 GTGTGTCCGT
Statistics
Matches: 69, Mismatches: 13, Indels: 12
0.73 0.14 0.13
Matches are distributed among these distances:
24 2 0.03
25 64 0.93
26 3 0.04
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (25 bp):
CATACGAGCTATGAATCGGTAAGCT
Found at i:18161442 original size:50 final size:50
Alignment explanation
Indices: 18161373--18161470 Score: 151
Period size: 50 Copynumber: 2.0 Consensus size: 50
18161363 TACAAGCTAT
* *
18161373 GAATCGGTATGCTCTCACGAGCTATAAATCAGTAAGCTCATACGAGCTGA
1 GAATCGGTAAGCTCTCACGAGCTACAAATCAGTAAGCTCATACGAGCTGA
* * *
18161423 GAATTGGTAAGCTCTCACGAGCTGCAAATCGGTAAGCTCATACGAGCT
1 GAATCGGTAAGCTCTCACGAGCTACAAATCAGTAAGCTCATACGAGCT
18161471 ATGGTGTGTC
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 43 1.00
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.23
Consensus pattern (50 bp):
GAATCGGTAAGCTCTCACGAGCTACAAATCAGTAAGCTCATACGAGCTGA
Found at i:18161556 original size:248 final size:248
Alignment explanation
Indices: 18161116--18161599 Score: 767
Period size: 248 Copynumber: 2.0 Consensus size: 248
18161106 GTATGCTCAC
* * *
18161116 ACAAGCTGTGAATCGGTATGCTCTCACGAGCTGTAAATCGGTAAGCTCATACAAACTGAGAATCA
1 ACAAGCTATGAATCGGTATGCTCTCACGAGCTATAAATCAGTAAGCTCATACAAACTGAGAATCA
*
18161181 GTAAGCTCTCACGAGTTGCAAATCGGTAAGCTCATACGAGTTGCGATGTGTCCGTAACACATGCA
66 GTAAGCTCTCACGAGCTGCAAATCGGTAAGCTCATACGAGTTGCGATGTGTCCGTAACACATGCA
* * *
18161246 GGACCTCAATCAAATCAGTAACCCTAATGACATGTCATTTCTATCCTATGAATTCTTAAGGTTCA
131 GGACCTCAACCAAATCAGTAACCCTAATGACATGTCATTTCTATCCTATAAATTCCTAAGGTTCA
** *
18161311 AATGGGGCTCGATAATC-ATCGTACGTCATCGGATATGCAATTAGTATACCCAT
196 AACAGGGCTCGATAATCGA-CGTACGTCATCGAATATGCAATTAGTATACCCAT
* * **
18161364 ACAAGCTATGAATCGGTATGCTCTCACGAGCTATAAATCAGTAAGCTCATACGAGCTGAGAATTG
1 ACAAGCTATGAATCGGTATGCTCTCACGAGCTATAAATCAGTAAGCTCATACAAACTGAGAATCA
18161429 GTAAGCTCTCACGAGCTGCAAATCGGTAAGCTCATACGAGCTATG-G-TGTGTCCGTAACACATG
66 GTAAGCTCTCACGAGCTGCAAATCGGTAAGCTCATACGAG-T-TGCGATGTGTCCGTAACACATG
* *
18161492 CAGGACCTCAACCAAATCGGTAACCCTAATGACATGTCATTTGTATCCTATAAATTCCTAAGGTT
129 CAGGACCTCAACCAAATCAGTAACCCTAATGACATGTCATTTCTATCCTATAAATTCCTAAGGTT
*
18161557 CAAACATGGCTCGATAATCGACGTACGTCATCGAATATGCAAT
194 CAAACAGGGCTCGATAATCGACGTACGTCATCGAATATGCAAT
18161600 CCATATTATA
Statistics
Matches: 216, Mismatches: 17, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
248 211 0.98
249 3 0.01
250 2 0.01
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (248 bp):
ACAAGCTATGAATCGGTATGCTCTCACGAGCTATAAATCAGTAAGCTCATACAAACTGAGAATCA
GTAAGCTCTCACGAGCTGCAAATCGGTAAGCTCATACGAGTTGCGATGTGTCCGTAACACATGCA
GGACCTCAACCAAATCAGTAACCCTAATGACATGTCATTTCTATCCTATAAATTCCTAAGGTTCA
AACAGGGCTCGATAATCGACGTACGTCATCGAATATGCAATTAGTATACCCAT
Found at i:18174952 original size:50 final size:50
Alignment explanation
Indices: 18174828--18175069 Score: 245
Period size: 50 Copynumber: 4.7 Consensus size: 50
18174818 GATAATAACA
* ** * * *
18174828 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCTTGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAT-CGG
* * **
18174877 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * ** * *
18174927 TGCCCATGCCATGTCCCAAACATGGTCTTACGGGGGACCTCTCATCTCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* *
18174977 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GG
18175033 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
18175070 TATCTTTACC
Statistics
Matches: 158, Mismatches: 27, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
48 1 0.01
49 39 0.25
50 80 0.51
53 2 0.01
56 36 0.23
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:18177541 original size:10 final size:10
Alignment explanation
Indices: 18177526--18177573 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
18177516 TAACATGTTG
18177526 AATTTTAATT
1 AATTTTAATT
*
18177536 AATTTTATAATA
1 AA-TTT-TAATT
*
18177548 AATTTTGATT
1 AATTTTAATT
*
18177558 AATTTTGATT
1 AATTTTAATT
18177568 AATTTT
1 AATTTT
18177574 CGACAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
10 21 0.64
11 6 0.18
12 6 0.18
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (10 bp):
AATTTTAATT
Found at i:18191438 original size:36 final size:34
Alignment explanation
Indices: 18191388--18191475 Score: 124
Period size: 36 Copynumber: 2.6 Consensus size: 34
18191378 TCAATCCAAC
**
18191388 CAAACACAGTAGATGCTCACACGAGCCAATCCCT
1 CAAACACACCAGATGCTCACACGAGCCAATCCCT
18191422 CCAAAACACACCAGATGCTCACACGAGCCAATCCCT
1 -C-AAACACACCAGATGCTCACACGAGCCAATCCCT
*
18191458 CTAACACACCA-ATGCTCA
1 CAAACACACCAGATGCTCA
18191476 TAAGAGCTAA
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
33 7 0.14
34 9 0.18
35 2 0.04
36 31 0.63
ACGTcount: A:0.36, C:0.39, G:0.11, T:0.14
Consensus pattern (34 bp):
CAAACACACCAGATGCTCACACGAGCCAATCCCT
Found at i:18193643 original size:22 final size:21
Alignment explanation
Indices: 18193604--18193644 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
18193594 GTTATTTTAA
* *
18193604 AGTTTAAATTAAATAAAGGCT
1 AGTTTAAAATAAAAAAAGGCT
18193625 AGTTTAATAATAAAAAAAGG
1 AGTTTAA-AATAAAAAAAGG
18193645 TAGGGTCATC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.54, C:0.02, G:0.15, T:0.29
Consensus pattern (21 bp):
AGTTTAAAATAAAAAAAGGCT
Found at i:18194878 original size:41 final size:41
Alignment explanation
Indices: 18194470--18194953 Score: 458
Period size: 41 Copynumber: 11.9 Consensus size: 41
18194460 ACTAAGTCCT
*
18194470 GCAGGCTTCATGCC-GTTGTATTATATCAAGCTTTGTGCCTA
1 GCAGGCTTCATGCCAG-TGTATTATATCAGGCTTTGTGCCTA
* * *** * * *
18194511 AC-GAGCTTCGTGTTGGAGTATTATATCAAGCTTTATGCCTA
1 GCAG-GCTTCATGCCAGTGTATTATATCAGGCTTTGTGCCTA
* * *
18194552 GTAGGCTTCGTGCCAATGTATTATATCAGGCTTTGTGCCTA
1 GCAGGCTTCATGCCAGTGTATTATATCAGGCTTTGTGCCTA
* * * *
18194593 GCAGGATTCGTGCTAGTGTATTATATCAGGCTTTATGCCTA
1 GCAGGCTTCATGCCAGTGTATTATATCAGGCTTTGTGCCTA
* ** *
18194634 CCAGGCTTCATGCTGGTGTATTATATCAAGCTTTGTGCCTA
1 GCAGGCTTCATGCCAGTGTATTATATCAGGCTTTGTGCCTA
*
18194675 GCAAGCTTCATGCC-GATGTATTATATCAGGCTTTGTGCCTA
1 GCAGGCTTCATGCCAG-TGTATTATATCAGGCTTTGTGCCTA
* * * * * *
18194716 GCAGACTTTATGCTTA-TGTATTATATCAAGATTTATGCCTA
1 GCAGGCTTCATGC-CAGTGTATTATATCAGGCTTTGTGCCTA
* * * * *
18194757 GTAGGCTTCAAGTCGGTGTA-T-TATCAGGCTTTGTACCTA
1 GCAGGCTTCATGCCAGTGTATTATATCAGGCTTTGTGCCTA
* *
18194796 GTAGGCTTCATGTCAGTGTATTATATCAGGCTTTGTGCCTA
1 GCAGGCTTCATGCCAGTGTATTATATCAGGCTTTGTGCCTA
* * *
18194837 GCAGGCTTTATGCCAGTGTATTATATTAAGCTTTGTGCCTA
1 GCAGGCTTCATGCCAGTGTATTATATCAGGCTTTGTGCCTA
* ** * * *
18194878 GAAGGCTTCATATCTGTGTGTTATATCAGGCTTTGAGCCTA
1 GCAGGCTTCATGCCAGTGTATTATATCAGGCTTTGTGCCTA
* * * * *
18194919 GCAGGCATCGTGTCAGTGTGTTATATTAGGCTTTG
1 GCAGGCTTCATGCCAGTGTATTATATCAGGCTTTG
18194954 AGCTTAATAG
Statistics
Matches: 363, Mismatches: 71, Indels: 18
0.80 0.16 0.04
Matches are distributed among these distances:
39 32 0.09
40 4 0.01
41 325 0.90
42 2 0.01
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.37
Consensus pattern (41 bp):
GCAGGCTTCATGCCAGTGTATTATATCAGGCTTTGTGCCTA
Found at i:18194967 original size:203 final size:203
Alignment explanation
Indices: 18194474--18194944 Score: 504
Period size: 203 Copynumber: 2.3 Consensus size: 203
18194464 AGTCCTGCAG
* * * * * * * *
18194474 GCTTCATGCCGTTGTATTATATCAAGCTTTGTGCCTAAC-GAGCTTCGTGTTGGA-GTATTATAT
1 GCTTCATGCCGATGTATTATATCAGGCTTTGAGCCTAGCAGA-CATCATGCT-CATGTATTATAT
* * ** * ** *
18194537 CAAGCTTTATGCCTAGTAGGCTTCGTGCCAATGTATTATATCAGGCTTTGTGCCTAGCAGGATTC
64 CAAGATTTATGCCTAATAGGCTTCAAGTCGGTGTA-T-TATCAGGCTTTGTACCTAGCAGGATTC
* **
18194602 GTGCTAGTGTATTATATCAGGCTTTATGCCTACCAGGCTTCATGCTGGTGTATTATATCAAGCTT
127 ATGCTAGTGTATTATATCAGGCTTTATGCCTACCAGGCTTCATGCCAGTGTATTATATCAAGCTT
18194667 TGTGCCTAGCAA
192 TGTGCCTAGCAA
* * * *
18194679 GCTTCATGCCGATGTATTATATCAGGCTTTGTGCCTAGCAGACTTTATGCTTATGTATTATATCA
1 GCTTCATGCCGATGTATTATATCAGGCTTTGAGCCTAGCAGACATCATGCTCATGTATTATATCA
* * *
18194744 AGATTTATGCCTAGTAGGCTTCAAGTCGGTGTATTATCAGGCTTTGTACCTAGTAGGCTTCATG-
66 AGATTTATGCCTAATAGGCTTCAAGTCGGTGTATTATCAGGCTTTGTACCTAGCAGGATTCATGC
* * * *
18194808 TCAGTGTATTATATCAGGCTTTGTGCCTAGCAGGCTTTATGCCAGTGTATTATATTAAGCTTTGT
131 T-AGTGTATTATATCAGGCTTTATGCCTACCAGGCTTCATGCCAGTGTATTATATCAAGCTTTGT
18194873 GCCTAG-AA
195 GCCTAGCAA
* * * * * *
18194881 GGCTTCATATCTG-TGTGTTATATCAGGCTTTGAGCCTAGCAGGCATCGTG-TCAGTGTGTTATA
1 -GCTTCAT-GCCGATGTATTATATCAGGCTTTGAGCCTAGCAGACATCATGCTCA-TGTATTATA
18194944 T
63 T
18194945 TAGGCTTTGA
Statistics
Matches: 227, Mismatches: 33, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
202 5 0.02
203 136 0.60
204 4 0.02
205 80 0.35
206 2 0.01
ACGTcount: A:0.22, C:0.18, G:0.23, T:0.37
Consensus pattern (203 bp):
GCTTCATGCCGATGTATTATATCAGGCTTTGAGCCTAGCAGACATCATGCTCATGTATTATATCA
AGATTTATGCCTAATAGGCTTCAAGTCGGTGTATTATCAGGCTTTGTACCTAGCAGGATTCATGC
TAGTGTATTATATCAGGCTTTATGCCTACCAGGCTTCATGCCAGTGTATTATATCAAGCTTTGTG
CCTAGCAA
Found at i:18199275 original size:40 final size:41
Alignment explanation
Indices: 18199191--18199279 Score: 162
Period size: 41 Copynumber: 2.2 Consensus size: 41
18199181 TTTCTGAATT
*
18199191 AATGAAAAGGTTGAAAAGGATGTTATCCGAAAAGGATATCA
1 AATGAAAAGGTTGAAAAGGATGTTATCCGAAAAGGATAACA
18199232 AATGAAAAGGTTGAAAAGGATGTTATCC-AAAAGGATAACA
1 AATGAAAAGGTTGAAAAGGATGTTATCCGAAAAGGATAACA
18199272 AATGAAAA
1 AATGAAAA
18199280 TGATGTATTT
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
40 19 0.40
41 28 0.60
ACGTcount: A:0.51, C:0.07, G:0.22, T:0.20
Consensus pattern (41 bp):
AATGAAAAGGTTGAAAAGGATGTTATCCGAAAAGGATAACA
Found at i:18207372 original size:16 final size:15
Alignment explanation
Indices: 18207317--18207372 Score: 58
Period size: 16 Copynumber: 3.5 Consensus size: 15
18207307 CCAAATTCTA
18207317 AAAATTAAAAAATAT
1 AAAATTAAAAAATAT
*
18207332 ATAATTATAAAAATAT
1 AAAATTA-AAAAATAT
*
18207348 GAAACATTAAATATATAT
1 -AAA-ATTAAA-AAATAT
18207366 AAAATTA
1 AAAATTA
18207373 CATAAAGGCT
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
15 6 0.18
16 12 0.35
17 7 0.21
18 9 0.26
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (15 bp):
AAAATTAAAAAATAT
Found at i:18210520 original size:17 final size:17
Alignment explanation
Indices: 18210478--18210521 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 17
18210468 AATTCATAAA
18210478 AATGATGATACATGAAAT
1 AATGAT-ATACATGAAAT
*
18210496 ATTGATATA-ATGAAAT
1 AATGATATACATGAAAT
18210512 GAATGATATA
1 -AATGATATA
18210522 TGTTTATGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 7 0.30
17 11 0.48
18 5 0.22
ACGTcount: A:0.50, C:0.02, G:0.16, T:0.32
Consensus pattern (17 bp):
AATGATATACATGAAAT
Found at i:18215968 original size:21 final size:22
Alignment explanation
Indices: 18215943--18215998 Score: 69
Period size: 26 Copynumber: 2.4 Consensus size: 22
18215933 TATATAAAAC
18215943 AATAACATAG-AAATTAAAATA
1 AATAACATAGCAAATTAAAATA
18215964 AATAACATACAAAGCAAATTAAAATA
1 AATAACAT----AGCAAATTAAAATA
18215990 AATAACATA
1 AATAACATA
18215999 AAAGACAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
21 8 0.27
22 1 0.03
25 2 0.07
26 19 0.63
ACGTcount: A:0.66, C:0.09, G:0.04, T:0.21
Consensus pattern (22 bp):
AATAACATAGCAAATTAAAATA
Found at i:18215986 original size:26 final size:26
Alignment explanation
Indices: 18215953--18216016 Score: 103
Period size: 26 Copynumber: 2.5 Consensus size: 26
18215943 AATAACATAG
18215953 AAATTAAAATAAATAACATACAAAG-C
1 AAATTAAAATAAATAACATA-AAAGAC
18215979 AAATTAAAATAAATAACATAAAAGAC
1 AAATTAAAATAAATAACATAAAAGAC
*
18216005 AATTTAAAATAA
1 AAATTAAAATAA
18216017 TGTATAAAAG
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
25 4 0.11
26 32 0.89
ACGTcount: A:0.67, C:0.08, G:0.03, T:0.22
Consensus pattern (26 bp):
AAATTAAAATAAATAACATAAAAGAC
Found at i:18216092 original size:2 final size:2
Alignment explanation
Indices: 18216085--18216114 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
18216075 TTTTTAAAAT
18216085 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
18216115 AAACAAACGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:18218758 original size:29 final size:29
Alignment explanation
Indices: 18218716--18218777 Score: 124
Period size: 29 Copynumber: 2.1 Consensus size: 29
18218706 GTAACATGTG
18218716 TGTTTGGAATATTGTATTCGTATTTTGTA
1 TGTTTGGAATATTGTATTCGTATTTTGTA
18218745 TGTTTGGAATATTGTATTCGTATTTTGTA
1 TGTTTGGAATATTGTATTCGTATTTTGTA
18218774 TGTT
1 TGTT
18218778 AATGGAAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.19, C:0.03, G:0.21, T:0.56
Consensus pattern (29 bp):
TGTTTGGAATATTGTATTCGTATTTTGTA
Found at i:18221844 original size:23 final size:23
Alignment explanation
Indices: 18221814--18221871 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
18221804 ATGTTTTGGA
18221814 AATGGCTAAATGTGGTACGTTTT
1 AATGGCTAAATGTGGTACGTTTT
18221837 AATGGCTAAATGTGGTACGTTTT
1 AATGGCTAAATGTGGTACGTTTT
* *
18221860 AGTGCCTAAATG
1 AATGGCTAAATG
18221872 GACTAGAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.28, C:0.10, G:0.26, T:0.36
Consensus pattern (23 bp):
AATGGCTAAATGTGGTACGTTTT
Found at i:18230754 original size:23 final size:23
Alignment explanation
Indices: 18230723--18231023 Score: 162
Period size: 23 Copynumber: 12.9 Consensus size: 23
18230713 ATTGCTTCAC
*
18230723 CAAAATTGGGCAGCATACATACA
1 CAAAATTGGACAGCATACATACA
* *
18230746 CAAATTTGGACAGCACT-TATACA
1 CAAAATTGGACAGCA-TACATACA
** ** *
18230769 CAAAATTTAACAGCATGTATATA
1 CAAAATTGGACAGCATACATACA
** *
18230792 CAAAATTGGACAGCATTGATTCA
1 CAAAATTGGACAGCATACATACA
* *
18230815 CCAAAATTGGGCAGCATACATATA
1 -CAAAATTGGACAGCATACATACA
* *
18230839 CAAATTTGGACAGCACT-TATACA
1 CAAAATTGGACAGCA-TACATACA
* ** *
18230862 CAAAATAT-AACAGCATGTATATA
1 CAAAAT-TGGACAGCATACATACA
** *
18230885 CAAAATTGGACAGCATTTATTCACC
1 CAAAATTGGACAGCATACA-T-ACA
*
18230910 CAAAATTTGG-CAACATACATACA
1 CAAAA-TTGGACAGCATACATACA
* *
18230933 CAAATTTGGACAGCACT-TATACA
1 CAAAATTGGACAGCA-TACATACA
** ** *
18230956 CAAAATTTAACAGCATGTATATA
1 CAAAATTGGACAGCATACATACA
* ** **
18230979 CAAAATTTGACAGCATTGATTTA
1 CAAAATTGGACAGCATACATACA
*
18231002 TCAAAATTGGGCAGCATACATA
1 -CAAAATTGGACAGCATACATA
18231024 TAACAATTGT
Statistics
Matches: 215, Mismatches: 49, Indels: 27
0.74 0.17 0.09
Matches are distributed among these distances:
22 8 0.04
23 151 0.70
24 40 0.19
25 12 0.06
26 4 0.02
ACGTcount: A:0.43, C:0.19, G:0.13, T:0.26
Consensus pattern (23 bp):
CAAAATTGGACAGCATACATACA
Found at i:18230848 original size:93 final size:93
Alignment explanation
Indices: 18230689--18231023 Score: 562
Period size: 93 Copynumber: 3.6 Consensus size: 93
18230679 TCATCCATAT
* * *
18230689 CATGTATGTACAAAATTTGACAGCATTGCTTCACCAAAATTGGGCAGCATACATACACAAATTTG
1 CATGTATATACAAAATTGGACAGCATTGATTCACCAAAATTGGGCAGCATACATACACAAATTTG
18230754 GACAGCACTTATACACAAAATTTAACAG
66 GACAGCACTTATACACAAAATTTAACAG
*
18230782 CATGTATATACAAAATTGGACAGCATTGATTCACCAAAATTGGGCAGCATACATATACAAATTTG
1 CATGTATATACAAAATTGGACAGCATTGATTCACCAAAATTGGGCAGCATACATACACAAATTTG
*
18230847 GACAGCACTTATACACAAAATATAACAG
66 GACAGCACTTATACACAAAATTTAACAG
* * *
18230875 CATGTATATACAAAATTGGACAGCATTTATTCACCCAAAATTTGGCAACATACATACACAAATTT
1 CATGTATATACAAAATTGGACAGCATTGATTCA-CCAAAATTGGGCAGCATACATACACAAATTT
18230940 GGACAGCACTTATACACAAAATTTAACAG
65 GGACAGCACTTATACACAAAATTTAACAG
* * *
18230969 CATGTATATACAAAATTTGACAGCATTGATTTATCAAAATTGGGCAGCATACATA
1 CATGTATATACAAAATTGGACAGCATTGATTCACCAAAATTGGGCAGCATACATA
18231024 TAACAATTGT
Statistics
Matches: 225, Mismatches: 16, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
93 139 0.62
94 86 0.38
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.27
Consensus pattern (93 bp):
CATGTATATACAAAATTGGACAGCATTGATTCACCAAAATTGGGCAGCATACATACACAAATTTG
GACAGCACTTATACACAAAATTTAACAG
Found at i:18231009 original size:187 final size:186
Alignment explanation
Indices: 18230689--18231025 Score: 584
Period size: 187 Copynumber: 1.8 Consensus size: 186
18230679 TCATCCATAT
* * * *
18230689 CATGTATGTACAAAATTTGACAGCATTGCTTCACCAAAATTGGGCAGCATACATACACAAATTTG
1 CATGTATATACAAAATTGGACAGCATTGATTCACCAAAATTGGGCAACATACATACACAAATTTG
18230754 GACAGCACTTATACACAAAATTTAACAGCATGTATATACAAAATTGGACAGCATTGATTCACCAA
66 GACAGCACTTATACACAAAATTTAACAGCATGTATATACAAAATTGGACAGCATTGATTCACCAA
18230819 AATTGGGCAGCATACATATACAAATTTGGACAGCACTTATACACAAAATATAACAG
131 AATTGGGCAGCATACATATACAAATTTGGACAGCACTTATACACAAAATATAACAG
* *
18230875 CATGTATATACAAAATTGGACAGCATTTATTCACCCAAAATTTGGCAACATACATACACAAATTT
1 CATGTATATACAAAATTGGACAGCATTGATTCA-CCAAAATTGGGCAACATACATACACAAATTT
* * *
18230940 GGACAGCACTTATACACAAAATTTAACAGCATGTATATACAAAATTTGACAGCATTGATTTATCA
65 GGACAGCACTTATACACAAAATTTAACAGCATGTATATACAAAATTGGACAGCATTGATTCACCA
18231005 AAATTGGGCAGCATACATATA
130 AAATTGGGCAGCATACATATA
18231026 ACAATTGTGC
Statistics
Matches: 141, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
186 29 0.21
187 112 0.79
ACGTcount: A:0.42, C:0.19, G:0.13, T:0.27
Consensus pattern (186 bp):
CATGTATATACAAAATTGGACAGCATTGATTCACCAAAATTGGGCAACATACATACACAAATTTG
GACAGCACTTATACACAAAATTTAACAGCATGTATATACAAAATTGGACAGCATTGATTCACCAA
AATTGGGCAGCATACATATACAAATTTGGACAGCACTTATACACAAAATATAACAG
Found at i:18231794 original size:28 final size:28
Alignment explanation
Indices: 18231762--18231888 Score: 164
Period size: 28 Copynumber: 4.5 Consensus size: 28
18231752 ATTTAATAAG
* * *
18231762 CTCGCACACTTAGTGCTCAATAATCAAA
1 CTCGCACACTTAGTGCTCTACAATTAAA
* *
18231790 CTCGCACACTTAGTGCTTTACCATTAAA
1 CTCGCACACTTAGTGCTCTACAATTAAA
*
18231818 CTCGCACACTTAGCGCTCTACAATTAAA
1 CTCGCACACTTAGTGCTCTACAATTAAA
* * *
18231846 CTCGCACACTGAGTGCTTTATAATTAAA
1 CTCGCACACTTAGTGCTCTACAATTAAA
*
18231874 TTCGCACACTTAGTG
1 CTCGCACACTTAGTG
18231889 TCGAAAATCA
Statistics
Matches: 85, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 85 1.00
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.29
Consensus pattern (28 bp):
CTCGCACACTTAGTGCTCTACAATTAAA
Found at i:18238116 original size:23 final size:23
Alignment explanation
Indices: 18238089--18238615 Score: 243
Period size: 23 Copynumber: 22.7 Consensus size: 23
18238079 ACTACATATT
18238089 ACAAATTTGGACAGCACT-TATAC
1 ACAAATTTGGACAGCA-TGTATAC
* * *
18238112 ACAAAATAT-AACAGCATGTATAT
1 AC-AAATTTGGACAGCATGTATAC
*
18238135 ACAAAATTT-GACAGCACTG-ATTC
1 AC-AAATTTGGACAGCA-TGTATAC
* * ** *
18238158 ACCAAAATTGGGCAGCATACATAT
1 A-CAAATTTGGACAGCATGTATAC
*
18238182 ACAAATTTGGACAGCA-CT-TAC
1 ACAAATTTGGACAGCATGTATAC
* *
18238203 ACAAAATAT-AACAGCATGTATGTAC
1 AC-AAATTTGGACAGCATGTA--TAC
18238228 A-AAATTT-GACAGCATTGCT-T-C
1 ACAAATTTGGACAGCA-TG-TATAC
* * **
18238249 ACCAAAATTGGGCAGCATACATAC
1 A-CAAATTTGGACAGCATGTATAC
18238273 ACAAATTTGGACAGCACT-TATAC
1 ACAAATTTGGACAGCA-TGTATAC
* *
18238296 ACAAAATTTAG-CAGCATGTATAT
1 AC-AAATTTGGACAGCATGTATAC
* * *
18238319 ATAAAATTGGACAGCAT-TGATTC
1 ACAAATTTGGACAGCATGT-ATAC
* * ** *
18238342 ACCAAAATTGGGCAGCATACATAT
1 A-CAAATTTGGACAGCATGTATAC
18238366 ACAAATTTGGACAGCACT-TATAC
1 ACAAATTTGGACAGCA-TGTATAC
* * *
18238389 ACAAAATAT-AACAGCATGTATAT
1 AC-AAATTTGGACAGCATGTATAC
* *
18238412 ACAAAATTGGACAGCAT-TGATTC
1 ACAAATTTGGACAGCATGT-ATAC
* * ** *
18238435 ACCAAAATTGGGCAGCATACATAT
1 A-CAAATTTGGACAGCATGTATAC
18238459 ACAAATTTGGACAGCACT-TATAC
1 ACAAATTTGGACAGCA-TGTATAC
* * *
18238482 ACAAAATAT-AACAGCATGTATAT
1 AC-AAATTTGGACAGCATGTATAC
* *
18238505 ACAAAATTGGACAGCATTTATTCAC
1 ACAAATTTGGACAGCATGTA-T-AC
* **
18238530 CCAAAATTTGG-CAGCATACATAC
1 AC-AAATTTGGACAGCATGTATAC
*
18238553 ACAAATTTGGACAGCATTTATAC
1 ACAAATTTGGACAGCATGTATAC
* *
18238576 ACAAAATTT-AACAGCATGTATAT
1 AC-AAATTTGGACAGCATGTATAC
18238599 ACAAAATTT-GACAGCAT
1 AC-AAATTTGGACAGCAT
18238616 TGATTTATCA
Statistics
Matches: 383, Mismatches: 80, Indels: 82
0.70 0.15 0.15
Matches are distributed among these distances:
21 12 0.03
22 35 0.09
23 225 0.59
24 90 0.23
25 14 0.04
26 7 0.02
ACGTcount: A:0.42, C:0.19, G:0.13, T:0.26
Consensus pattern (23 bp):
ACAAATTTGGACAGCATGTATAC
Found at i:18238188 original size:46 final size:46
Alignment explanation
Indices: 18238081--18238646 Score: 467
Period size: 46 Copynumber: 12.2 Consensus size: 46
18238071 CTAACTATAC
*
18238081 TACATATTACAAATTTGGACAGCACTTATACACAAAATAT-AACAGCA
1 TACATA-TACAAATTTGGACAGCACTTATACACAAAAT-TGAGCAGCA
** * * *
18238128 TGTATATACAAAATTT-GACAGCACTGATTCACCAAAATTGGGCAGCA
1 TACATATAC-AAATTTGGACAGCACTTATACA-CAAAATTGAGCAGCA
*
18238175 TACATATACAAATTTGGACAGCAC-T-TACACAAAATAT-AACAGCA
1 TACATATACAAATTTGGACAGCACTTATACACAAAAT-TGAGCAGCA
** * * * *
18238219 TGTATGTACAAAATTT-GACAGCA-TTGCTTCACCAAAATTGGGCAGCA
1 TACATATAC-AAATTTGGACAGCACTT-ATACA-CAAAATTGAGCAGCA
* *
18238266 TACATACACAAATTTGGACAGCACTTATACACAAAATTTAGCAGCA
1 TACATATACAAATTTGGACAGCACTTATACACAAAATTGAGCAGCA
** * * * *
18238312 TGTATATATAAAATTGGACAGCA-TTGATTCACCAAAATTGGGCAGCA
1 TACATATACAAATTTGGACAGCACTT-ATACA-CAAAATTGAGCAGCA
*
18238359 TACATATACAAATTTGGACAGCACTTATACACAAAATAT-AACAGCA
1 TACATATACAAATTTGGACAGCACTTATACACAAAAT-TGAGCAGCA
** * * *
18238405 TGTATATACAAAATTGGACAGCA-TTGATTCACCAAAATTGGGCAGCA
1 TACATATACAAATTTGGACAGCACTT-ATACA-CAAAATTGAGCAGCA
*
18238452 TACATATACAAATTTGGACAGCACTTATACACAAAATAT-AACAGCA
1 TACATATACAAATTTGGACAGCACTTATACACAAAAT-TGAGCAGCA
** * * *
18238498 TGTATATACAAAATTGGACAGCATTTATTCACCCAAAATTTG-GCAGCA
1 TACATATACAAATTTGGACAGCACTTA-T-ACACAAAA-TTGAGCAGCA
* * * *
18238546 TACATACACAAATTTGGACAGCATTTATACACAAAATTTAACAGCA
1 TACATATACAAATTTGGACAGCACTTATACACAAAATTGAGCAGCA
** ** * *
18238592 TGTATATACAAAATTT-GACAGCA-TTGATTTATCAAAATTGGGCAGCC
1 TACATATAC-AAATTTGGACAGCACTT-ATACA-CAAAATTGAGCAGCA
18238639 TACATATA
1 TACATATA
18238647 ACAATTGTGC
Statistics
Matches: 412, Mismatches: 77, Indels: 60
0.75 0.14 0.11
Matches are distributed among these distances:
44 25 0.06
45 18 0.04
46 166 0.40
47 160 0.39
48 42 0.10
49 1 0.00
ACGTcount: A:0.42, C:0.19, G:0.13, T:0.26
Consensus pattern (46 bp):
TACATATACAAATTTGGACAGCACTTATACACAAAATTGAGCAGCA
Found at i:18238197 original size:93 final size:93
Alignment explanation
Indices: 18238081--18238646 Score: 938
Period size: 93 Copynumber: 6.1 Consensus size: 93
18238071 CTAACTATAC
*
18238081 TACATATTACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTTGA
1 TACATA-TACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGA
*
18238146 CAGCACTGATTCACCAAAATTGGGCAGCA
65 CAGCATTGATTCACCAAAATTGGGCAGCA
* *
18238175 TACATATACAAATTTGGACAGCAC-T-TACACAAAATATAACAGCATGTATGTACAAAATTTGAC
1 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
*
18238238 AGCATTGCTTCACCAAAATTGGGCAGCA
66 AGCATTGATTCACCAAAATTGGGCAGCA
* * * *
18238266 TACATACACAAATTTGGACAGCACTTATACACAAAATTTAGCAGCATGTATATATAAAATTGGAC
1 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
18238331 AGCATTGATTCACCAAAATTGGGCAGCA
66 AGCATTGATTCACCAAAATTGGGCAGCA
18238359 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
1 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
18238424 AGCATTGATTCACCAAAATTGGGCAGCA
66 AGCATTGATTCACCAAAATTGGGCAGCA
18238452 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
1 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
* *
18238517 AGCATTTATTCACCCAAAATTTGGCAGCA
66 AGCATTGATTCA-CCAAAATTGGGCAGCA
* * * *
18238546 TACATACACAAATTTGGACAGCATTTATACACAAAATTTAACAGCATGTATATACAAAATTTGAC
1 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
* * *
18238611 AGCATTGATTTATCAAAATTGGGCAGCC
66 AGCATTGATTCACCAAAATTGGGCAGCA
18238639 TACATATA
1 TACATATA
18238647 ACAATTGTGC
Statistics
Matches: 443, Mismatches: 26, Indels: 7
0.93 0.05 0.01
Matches are distributed among these distances:
91 86 0.19
92 2 0.00
93 263 0.59
94 92 0.21
ACGTcount: A:0.42, C:0.19, G:0.13, T:0.26
Consensus pattern (93 bp):
TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
AGCATTGATTCACCAAAATTGGGCAGCA
Found at i:18239417 original size:28 final size:28
Alignment explanation
Indices: 18239385--18239511 Score: 173
Period size: 28 Copynumber: 4.5 Consensus size: 28
18239375 ATTTAATAAG
* * *
18239385 CTCGCACACTTAGTGCTCAATAATCAAA
1 CTCGCACACTTAGTGCTCTACAATTAAA
* *
18239413 CTCGCACACTTAGTGCTTTACCATTAAA
1 CTCGCACACTTAGTGCTCTACAATTAAA
18239441 CTCGCACACTTAGTGCTCTACAATTAAA
1 CTCGCACACTTAGTGCTCTACAATTAAA
* *
18239469 CTCGCACACTTAGTGCTTTATAATTAAA
1 CTCGCACACTTAGTGCTCTACAATTAAA
* *
18239497 TTTGCACACTTAGTG
1 CTCGCACACTTAGTG
18239512 TCGAAAATTA
Statistics
Matches: 88, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 88 1.00
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.31
Consensus pattern (28 bp):
CTCGCACACTTAGTGCTCTACAATTAAA
Found at i:18239451 original size:56 final size:56
Alignment explanation
Indices: 18239385--18239511 Score: 191
Period size: 56 Copynumber: 2.3 Consensus size: 56
18239375 ATTTAATAAG
* *
18239385 CTCGCACACTTAGTGCTCAATAATCAAACTCGCACACTTAGTGCTTTACCATTAAA
1 CTCGCACACTTAGTGCTCAACAATCAAACTCGCACACTTAGTGCTTTACAATTAAA
* * *
18239441 CTCGCACACTTAGTGCTCTACAATTAAACTCGCACACTTAGTGCTTTATAATTAAA
1 CTCGCACACTTAGTGCTCAACAATCAAACTCGCACACTTAGTGCTTTACAATTAAA
* *
18239497 TTTGCACACTTAGTG
1 CTCGCACACTTAGTG
18239512 TCGAAAATTA
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 64 1.00
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.31
Consensus pattern (56 bp):
CTCGCACACTTAGTGCTCAACAATCAAACTCGCACACTTAGTGCTTTACAATTAAA
Found at i:18257007 original size:16 final size:16
Alignment explanation
Indices: 18256988--18257033 Score: 74
Period size: 16 Copynumber: 2.9 Consensus size: 16
18256978 CTATTACGTC
**
18256988 TCTATTCCATTATGCA
1 TCTATTCCATTACACA
18257004 TCTATTCCATTACACA
1 TCTATTCCATTACACA
18257020 TCTATTCCATTACA
1 TCTATTCCATTACA
18257034 GCGAACCAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.28, C:0.28, G:0.02, T:0.41
Consensus pattern (16 bp):
TCTATTCCATTACACA
Found at i:18257404 original size:22 final size:21
Alignment explanation
Indices: 18257366--18257408 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
18257356 TTGTTATTGA
18257366 GTACTAAAAAATAAAAACATAT
1 GTACTAAAAAATAAAAA-ATAT
* *
18257388 GTACTAAAAATTCAAAAATAT
1 GTACTAAAAAATAAAAAATAT
18257409 TTATTAAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.60, C:0.09, G:0.05, T:0.26
Consensus pattern (21 bp):
GTACTAAAAAATAAAAAATAT
Found at i:18260549 original size:44 final size:44
Alignment explanation
Indices: 18260501--18260616 Score: 103
Period size: 44 Copynumber: 2.6 Consensus size: 44
18260491 CTAATCCACT
** * *
18260501 CCACTACAACTTTAGGGAGATAGGA-TTTGTTCATTCAGTCTGCC
1 CCACTACAACTTTAGGGAGATAAAACTTTCTT-ACTCAGTCTGCC
* *
18260545 CCACTGCAA-TTTCAGGG-GAATAAAACTTTCTTACTCAGTCTGCT
1 CCACTACAACTTT-AGGGAG-ATAAAACTTTCTTACTCAGTCTGCC
* * *
18260589 CCACTACAACTTCAGCGAGATAAGACTT
1 CCACTACAACTTTAGGGAGATAAAACTT
18260617 ATGCGATCTA
Statistics
Matches: 57, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
43 4 0.07
44 45 0.79
45 8 0.14
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.29
Consensus pattern (44 bp):
CCACTACAACTTTAGGGAGATAAAACTTTCTTACTCAGTCTGCC
Found at i:18261445 original size:44 final size:44
Alignment explanation
Indices: 18261207--18261449 Score: 315
Period size: 44 Copynumber: 5.5 Consensus size: 44
18261197 ATCCTTAACC
* * * * ** * *
18261207 TATTCCACAGCTGACAAAGGAGATAGGATTCACAATCCTCCACT
1 TATTCCACTGCTGACCAGGGAGATAAGATTCGTAATCTTCAACT
** *
18261251 TATTCCACTGCTGAAGAGGGAGATAAGATTCGTATTCTTCAACT
1 TATTCCACTGCTGACCAGGGAGATAAGATTCGTAATCTTCAACT
* * *
18261295 TATTCCACTACTGACTAGGGAGATAAGATTCGTAATCTTTAACT
1 TATTCCACTGCTGACCAGGGAGATAAGATTCGTAATCTTCAACT
18261339 TATTCCACTGCTGACCAGGGAGATAAGATTCGTAATCTTCAACT
1 TATTCCACTGCTGACCAGGGAGATAAGATTCGTAATCTTCAACT
* *
18261383 TATTCCACTGCTGACCAGGGAGATAAGATTCGTAATCTTTAACC
1 TATTCCACTGCTGACCAGGGAGATAAGATTCGTAATCTTCAACT
* * *
18261427 TATTCCATTGTTGTCCAGGGAGA
1 TATTCCACTGCTGACCAGGGAGA
18261450 AAGGGTTGGG
Statistics
Matches: 176, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 176 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (44 bp):
TATTCCACTGCTGACCAGGGAGATAAGATTCGTAATCTTCAACT
Found at i:18261658 original size:88 final size:88
Alignment explanation
Indices: 18261464--18261678 Score: 263
Period size: 88 Copynumber: 2.4 Consensus size: 88
18261454 GTTGGGGTCA
* * * *
18261464 TCGATCTGCTTCGCTGTCAGTGCAAGAATGTC-AGATCTGCTATTTTTAACCTGCTCCACCGCAA
1 TCGATCTGCTTCGCTGTCGGTACAGGAA-GGCAAGATCTGCTATTTTTAACCTGCTCCACCGCAA
*
18261528 CCCAGGGAGGCAAGGCTGGTGTCT
65 CCCAGGGAGGCAAGGCTGATGTCT
* * * **** *
18261552 CCGATCTGCTTCGCTGTCGGTACAGGAAGGGAAGATCTGCTATTTTTAACTTGCTCTGTTGTAAC
1 TCGATCTGCTTCGCTGTCGGTACAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCACCGCAAC
*
18261617 CTAGGGAGGCAAGGCTGATGTCT
66 CCAGGGAGGCAAGGCTGATGTCT
*
18261640 TCGATCTGCTTCGCTGTCGG-AGCAGGAAGGCAAAATCTG
1 TCGATCTGCTTCGCTGTCGGTA-CAGGAAGGCAAGATCTG
18261679 TTATCTTCAC
Statistics
Matches: 108, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
87 2 0.02
88 106 0.98
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.28
Consensus pattern (88 bp):
TCGATCTGCTTCGCTGTCGGTACAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCACCGCAAC
CCAGGGAGGCAAGGCTGATGTCT
Found at i:18267430 original size:11 final size:11
Alignment explanation
Indices: 18267416--18267446 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
18267406 TAGAAATAAT
18267416 ATAAATAAATA
1 ATAAATAAATA
18267427 ATAAATAAATA
1 ATAAATAAATA
18267438 A-AAATAAAT
1 ATAAATAAAT
18267447 CAATGACATG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.40
11 12 0.60
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (11 bp):
ATAAATAAATA
Found at i:18267935 original size:47 final size:51
Alignment explanation
Indices: 18267843--18267936 Score: 142
Period size: 49 Copynumber: 1.9 Consensus size: 51
18267833 ATTTAAAAAA
*
18267843 TGAAAAATAAATAAATATATGTATATATATAAATATGAAAAAAATATTAGT
1 TGAAAAATAAATAAATATATGTACATATATAAATATGAAAAAAATATTAGT
*
18267894 TGAAAAATAAAT-AA-ATATGTACATATATAAA-A-GAAATAAATAT
1 TGAAAAATAAATAAATATATGTACATATATAAATATGAAAAAAATAT
18267937 ACATATATAT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
47 10 0.24
48 1 0.02
49 16 0.39
50 2 0.05
51 12 0.29
ACGTcount: A:0.61, C:0.01, G:0.07, T:0.31
Consensus pattern (51 bp):
TGAAAAATAAATAAATATATGTACATATATAAATATGAAAAAAATATTAGT
Found at i:18267946 original size:25 final size:25
Alignment explanation
Indices: 18267897--18267947 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
18267887 TATTAGTTGA
* **
18267897 AAAATAAATAAATATGTACATATAT
1 AAAAGAAATAAATATACACATATAT
*
18267922 AAAAGAAATAAATATACATATATAT
1 AAAAGAAATAAATATACACATATAT
18267947 A
1 A
18267948 TAGATTTAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.29
Consensus pattern (25 bp):
AAAAGAAATAAATATACACATATAT
Found at i:18273252 original size:25 final size:25
Alignment explanation
Indices: 18273218--18273329 Score: 107
Period size: 25 Copynumber: 4.5 Consensus size: 25
18273208 CATGTATGCC
* * *
18273218 CATACGAGCTATGAATCGGGAGGCT
1 CATACGAGCTGTAAATCGGGAAGCT
* *
18273243 CATACAAGCTGTAAATCAGGAAGCT
1 CATACGAGCTGTAAATCGGGAAGCT
* *
18273268 CATACGAGCTGTAAATCGGAAAGTT
1 CATACGAGCTGTAAATCGGGAAGCT
* ** **
18273293 CATACGAGTTACAAATTAGGAAGCT
1 CATACGAGCTGTAAATCGGGAAGCT
*
18273318 CATACGAACTGT
1 CATACGAGCTGT
18273330 GGTGTGCCTG
Statistics
Matches: 67, Mismatches: 20, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
25 67 1.00
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (25 bp):
CATACGAGCTGTAAATCGGGAAGCT
Found at i:18273296 original size:50 final size:50
Alignment explanation
Indices: 18273218--18273329 Score: 125
Period size: 50 Copynumber: 2.2 Consensus size: 50
18273208 CATGTATGCC
* * * * **
18273218 CATACGAGCTATGAATCGGGAGGCTCATACAAGCTGTAAATCAGGAAGCT
1 CATACGAGCTGTAAATCGGAAAGCTCATACAAGCTACAAATCAGGAAGCT
* * * *
18273268 CATACGAGCTGTAAATCGGAAAGTTCATACGAGTTACAAATTAGGAAGCT
1 CATACGAGCTGTAAATCGGAAAGCTCATACAAGCTACAAATCAGGAAGCT
*
18273318 CATACGAACTGT
1 CATACGAGCTGT
18273330 GGTGTGCCTG
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (50 bp):
CATACGAGCTGTAAATCGGAAAGCTCATACAAGCTACAAATCAGGAAGCT
Found at i:18276557 original size:7 final size:7
Alignment explanation
Indices: 18276545--18276580 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
18276535 CTGCTGAATC
18276545 CTCCTTT
1 CTCCTTT
18276552 CTCCTTT
1 CTCCTTT
18276559 CTCCTTT
1 CTCCTTT
*
18276566 CCCCTTT
1 CTCCTTT
*
18276573 CCCCTTT
1 CTCCTTT
18276580 C
1 C
18276581 CATCTCTCTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (7 bp):
CTCCTTT
Found at i:18277359 original size:27 final size:27
Alignment explanation
Indices: 18277329--18277485 Score: 183
Period size: 27 Copynumber: 5.8 Consensus size: 27
18277319 AAAAGGACCA
* * * *
18277329 AAATACCCTCAAAGGGTAAACTCACTG
1 AAATACCCCCGAAGGGTAAAATGACTG
* *
18277356 AAATACCCTCAAAGGGTAAAATGA-TCG
1 AAATACCCCCGAAGGGTAAAATGACT-G
* *
18277383 AAATACCCCCGAAGGGTAAAATAACTA
1 AAATACCCCCGAAGGGTAAAATGACTG
18277410 AAATACCCCCGAAGGGTAAAATGACTG
1 AAATACCCCCGAAGGGTAAAATGACTG
*
18277437 AAATACCCCCGAAGGGTTAAATGA-TCG
1 AAATACCCCCGAAGGGTAAAATGACT-G
* *
18277464 AAATACCCTCGAAGTGTAAAAT
1 AAATACCCCCGAAGGGTAAAAT
18277486 AACTATTATA
Statistics
Matches: 115, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
26 2 0.02
27 112 0.97
28 1 0.01
ACGTcount: A:0.43, C:0.22, G:0.18, T:0.18
Consensus pattern (27 bp):
AAATACCCCCGAAGGGTAAAATGACTG
Found at i:18277453 original size:81 final size:81
Alignment explanation
Indices: 18277328--18277499 Score: 245
Period size: 81 Copynumber: 2.1 Consensus size: 81
18277318 TAAAAGGACC
* * *
18277328 AAAATACCCTCAAAGGGTAAACTCACTGAAATACCCTCAAAGGGTAAAATGATCGAAATACCCCC
1 AAAATACCCCCAAAGGGTAAAATCACTGAAATACCCCCAAAGGGTAAAATGATCGAAATACCCCC
18277393 GAAGGGTAAAATAACT
66 GAAGGGTAAAATAACT
* * * * *
18277409 AAAATACCCCCGAAGGGTAAAATGACTGAAATACCCCCGAAGGGTTAAATGATCGAAATACCCTC
1 AAAATACCCCCAAAGGGTAAAATCACTGAAATACCCCCAAAGGGTAAAATGATCGAAATACCCCC
*
18277474 GAAGTGTAAAATAACT
66 GAAGGGTAAAATAACT
**
18277490 ATTATACCCC
1 AAAATACCCC
18277500 TAGGAGTTGA
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.42, C:0.23, G:0.16, T:0.19
Consensus pattern (81 bp):
AAAATACCCCCAAAGGGTAAAATCACTGAAATACCCCCAAAGGGTAAAATGATCGAAATACCCCC
GAAGGGTAAAATAACT
Found at i:18277712 original size:26 final size:26
Alignment explanation
Indices: 18277663--18277714 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18277653 TTGCCACATA
* *
18277663 TACTGTTACTGGCAGCCTTGCTACGT
1 TACTGTTACTGGCAACCTTACTACGT
18277689 TACTGTTACTGGCAA-CTCTACTACGT
1 TACTGTTACTGGCAACCT-TACTACGT
18277715 CATTATTAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.19, C:0.27, G:0.19, T:0.35
Consensus pattern (26 bp):
TACTGTTACTGGCAACCTTACTACGT
Found at i:18278743 original size:17 final size:18
Alignment explanation
Indices: 18278718--18278753 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
18278708 TTGTTAGAGT
18278718 AAACAGAAA-CTGTAGGG
1 AAACAGAAATCTGTAGGG
*
18278735 AAACTGAAATCTGTAGGG
1 AAACAGAAATCTGTAGGG
18278753 A
1 A
18278754 GACTTTTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.44, C:0.11, G:0.28, T:0.17
Consensus pattern (18 bp):
AAACAGAAATCTGTAGGG
Found at i:18285244 original size:27 final size:27
Alignment explanation
Indices: 18284939--18285244 Score: 328
Period size: 27 Copynumber: 11.3 Consensus size: 27
18284929 TTAATGGGCC
* * * *
18284939 TAAAATGCCCAAAATACTCTCAAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* *
18284966 TAAAATGATCGAAATACCCTCAAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* * * * *
18284993 TATAATAACTGAAATACCCTCAAAGGA
1 TAAAATGACCGAAATACCCTCGAAGGG
* *
18285020 TAAAATGACTGAAATACCCTCGAATGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* * * *
18285047 CAAAATAACCAAAATACCCGCGAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
*
18285074 TAAAATGATCGAAATATCCC-CGAAGGG
1 TAAAATGACCGAAATA-CCCTCGAAGGG
* * *
18285101 TAAAATGATCGAAACACCCTCGAAGCG
1 TAAAATGACCGAAATACCCTCGAAGGG
* *
18285128 TAAAATGATCGAAATACCCTCGAAGAG
1 TAAAATGACCGAAATACCCTCGAAGGG
*
18285155 TAAAATGACCGAAATACACCT-AAAGGG
1 TAAAATGACCGAAATAC-CCTCGAAGGG
* * * *
18285182 TAAAATAACTGAAATACCCCCGAAGGT
1 TAAAATGACCGAAATACCCTCGAAGGG
18285209 TAAAATGACCGAAATACCCTCGAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
18285236 TAAAATGAC
1 TAAAATGAC
18285245 TGTTATACCC
Statistics
Matches: 235, Mismatches: 40, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
26 5 0.02
27 224 0.95
28 6 0.03
ACGTcount: A:0.44, C:0.21, G:0.18, T:0.17
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCTCGAAGGG
Found at i:18285448 original size:26 final size:26
Alignment explanation
Indices: 18285419--18285486 Score: 118
Period size: 26 Copynumber: 2.6 Consensus size: 26
18285409 TTGCCACATA
*
18285419 TACTGTTACTGGCAGCCTTGCTGTGT
1 TACTATTACTGGCAGCCTTGCTGTGT
18285445 TACTATTACTGGCAGCCTTGCTGTGT
1 TACTATTACTGGCAGCCTTGCTGTGT
*
18285471 TACTATTACTAGCAGC
1 TACTATTACTGGCAGC
18285487 TCTACTGCGT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.37
Consensus pattern (26 bp):
TACTATTACTGGCAGCCTTGCTGTGT
Found at i:18288378 original size:25 final size:25
Alignment explanation
Indices: 18288340--18288387 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
18288330 TCATATTCAT
18288340 GTATGCTCATACGAGCTATGAATCA
1 GTATGCTCATACGAGCTATGAATCA
18288365 GTATGCTC-TCACGAGCTATGAAT
1 GTATGCTCAT-ACGAGCTATGAAT
18288388 TGGGAAGCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 1 0.05
25 21 0.95
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
GTATGCTCATACGAGCTATGAATCA
Found at i:18288403 original size:25 final size:25
Alignment explanation
Indices: 18288344--18288404 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
18288334 ATTCATGTAT
* *
18288344 GCTCATACGAGCTATGAATCAGTAT
1 GCTCATACGAGCTATGAATCAGGAA
**
18288369 GCTC-TCACGAGCTATGAATTGGGAA
1 GCTCAT-ACGAGCTATGAATCAGGAA
18288394 GCTCATACGAG
1 GCTCATACGAG
18288405 TTGTGGTGTG
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
24 1 0.03
25 28 0.93
26 1 0.03
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (25 bp):
GCTCATACGAGCTATGAATCAGGAA
Found at i:18306267 original size:27 final size:27
Alignment explanation
Indices: 18306237--18306301 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
18306227 CTTTTTCCCT
* * *
18306237 CAAAGACTTTATTTTATGATTTTGAAA
1 CAAAGACTTGATATTATAATTTTGAAA
18306264 CAAAGACTTGATATTATAATTTTGAAA
1 CAAAGACTTGATATTATAATTTTGAAA
18306291 CAAAGACTTGA
1 CAAAGACTTGA
18306302 GTGTGAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.42, C:0.09, G:0.12, T:0.37
Consensus pattern (27 bp):
CAAAGACTTGATATTATAATTTTGAAA
Found at i:18310334 original size:27 final size:27
Alignment explanation
Indices: 18310304--18310362 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
18310294 TAGGCAAAAA
18310304 CCTTTCTGGAAATCTATGAAAAGGAAG
1 CCTTTCTGGAAATCTATGAAAAGGAAG
**
18310331 CCTTTCTGGCTATCTATGAAAAGGAAG
1 CCTTTCTGGAAATCTATGAAAAGGAAG
18310358 CCTTT
1 CCTTT
18310363 GTGACGATCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.31
Consensus pattern (27 bp):
CCTTTCTGGAAATCTATGAAAAGGAAG
Found at i:18310372 original size:27 final size:27
Alignment explanation
Indices: 18310315--18310392 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
18310305 CTTTCTGGAA
* * *
18310315 ATCTATGAAAAGGAAGCCTTTCTGGCT
1 ATCTATGAAAAGGAAGCCTTTGTGACG
18310342 ATCTATGAAAAGGAAGCCTTTGTGACG
1 ATCTATGAAAAGGAAGCCTTTGTGACG
* *
18310369 ATCTAT-AAAGGGAATGCATTTGTG
1 ATCTATGAAAAGGAA-GCCTTTGTG
18310393 GTGCACTTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
26 7 0.16
27 38 0.84
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.29
Consensus pattern (27 bp):
ATCTATGAAAAGGAAGCCTTTGTGACG
Found at i:18314799 original size:13 final size:13
Alignment explanation
Indices: 18314760--18314823 Score: 74
Period size: 13 Copynumber: 4.9 Consensus size: 13
18314750 AGTTCTTTAT
*
18314760 TGCTTTTGAAAAA
1 TGCTTTTGAAAAG
* *
18314773 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
*
18314786 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
*
18314799 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
*
18314812 TACTTTTGAAAA
1 TGCTTTTGAAAA
18314824 TTTTGAATGT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 43 1.00
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:18315104 original size:21 final size:19
Alignment explanation
Indices: 18315048--18315108 Score: 70
Period size: 19 Copynumber: 3.1 Consensus size: 19
18315038 TAATTATTTA
18315048 TTAAATT-TAATTAGAATAT
1 TTAAATTATAATTA-AATAT
* *
18315067 ATAAATTATATTTAAATAT
1 TTAAATTATAATTAAATAT
18315086 TTAAATATAATAATTAAATAT
1 TTAAAT-T-ATAATTAAATAT
18315107 TT
1 TT
18315109 GTAATTAGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
19 16 0.46
20 6 0.17
21 13 0.37
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.48
Consensus pattern (19 bp):
TTAAATTATAATTAAATAT
Found at i:18316964 original size:72 final size:73
Alignment explanation
Indices: 18316874--18317048 Score: 198
Period size: 72 Copynumber: 2.4 Consensus size: 73
18316864 AAAATCACAT
* * * *
18316874 ATAAACAACTATTGATAAAACTAATTTAGTA-AAAAATAAGTAGAATATAAATTCAATGA-AGAA
1 ATAAACAACTTTTGATAAAACTAATTTAGCACAAAAATAAGTAGAACATAAATTCAAT-ATACAA
*
18316937 AGACCAAAC
65 AAACCAAAC
* * *
18316946 ATAAACAACTTTTAATAAAACTAGA-TTA-CACATAAATAAGTAGAACATAAATTCAATATCCAA
1 ATAAACAACTTTTGATAAAACTA-ATTTAGCACAAAAATAAGTAGAACATAAATTCAATATACAA
18317009 AAACCAAAC
65 AAACCAAAC
* *
18317018 ATAAATAA-TTGTTGATAAAACTAGTTTAGCA
1 ATAAACAACTT-TTGATAAAACTAATTTAGCA
18317049 TTGTTGTTTA
Statistics
Matches: 86, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
71 4 0.05
72 79 0.92
73 3 0.03
ACGTcount: A:0.54, C:0.12, G:0.08, T:0.26
Consensus pattern (73 bp):
ATAAACAACTTTTGATAAAACTAATTTAGCACAAAAATAAGTAGAACATAAATTCAATATACAAA
AACCAAAC
Found at i:18317479 original size:18 final size:18
Alignment explanation
Indices: 18317456--18317503 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
18317446 TCCATCAATT
*
18317456 TGAACATCATTTGAAATG
1 TGAACATCATTTAAAATG
18317474 TGAACATCATTTAAAATG
1 TGAACATCATTTAAAATG
18317492 TGAACATCATTT
1 TGAACATCATTT
18317504 CTCATTTTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.35
Consensus pattern (18 bp):
TGAACATCATTTAAAATG
Found at i:18318522 original size:117 final size:117
Alignment explanation
Indices: 18318387--18318778 Score: 474
Period size: 117 Copynumber: 3.3 Consensus size: 117
18318377 ATTTACAGGC
*
18318387 ACAAATTTTTTAATTAATATTTATGTAATTAAAAATAGTCCCTTTAAGATGATTATTAATTATTA
1 ACAAAGTTTTTAATTAATATTTATGTAATTAAAAATAGTCCCTTTAAGATGATTATTAATTATTA
18318452 TTATTGCTACTGAAAAAATTTTACATTCTTTTACATTATTTTCTATAATTTT
66 TTATTGCTACTGAAAAAATTTTACATTCTTTTACATTATTTTCTATAATTTT
** ** *
18318504 ACAAAGTTTTTAATTAATATTTATGTAATTAATATTTATGT-AATTAAAAAAAGTCCGATGATTA
1 ACAAAGTTTTTAATTAATATTTATGTAATTAA-AAATA-GTCCCTT----TAA----GATGATTA
* *
18318568 TTAATTATTATTATTGCTACTGACAAAATTTTACATTCTTTT-CTTTAATTTTAC-A-AAGTTTT
56 TTAATTATTATTATTGCTACTGAAAAAATTTTACATTCTTTTACATT-ATTTT-CTATAA-TTTT
* *
18318630 -TAAA-TTTATGTAATTAATATTTATGTAATTAAAAATGGTCCCTTTAAGATGATTATTAATTAT
1 ACAAAGTTT-T-TAATTAATATTTATGTAATTAAAAATAGTCCCTTTAAGATGATTATTAATTAT
* * *
18318693 TATTATTGCTACT-AACAAAATTTTACACTCTTTTACATTCTTTTCTGTAATTTT
64 TATTATTGCTACTGAA-AAAATTTTACATTCTTTTACATTATTTTCTATAATTTT
18318747 ACAAAGTTTTTAATTAATATTTATGTAATTAA
1 ACAAAGTTTTTAATTAATATTTATGTAATTAA
18318779 TATTTATGTA
Statistics
Matches: 232, Mismatches: 21, Indels: 44
0.78 0.07 0.15
Matches are distributed among these distances:
116 2 0.01
117 107 0.46
118 14 0.06
119 5 0.02
121 2 0.01
122 2 0.01
124 5 0.02
125 13 0.06
126 81 0.35
127 1 0.00
ACGTcount: A:0.37, C:0.08, G:0.06, T:0.48
Consensus pattern (117 bp):
ACAAAGTTTTTAATTAATATTTATGTAATTAAAAATAGTCCCTTTAAGATGATTATTAATTATTA
TTATTGCTACTGAAAAAATTTTACATTCTTTTACATTATTTTCTATAATTTT
Found at i:18318534 original size:15 final size:15
Alignment explanation
Indices: 18318514--18318550 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
18318504 ACAAAGTTTT
18318514 TAATTAATATTTATG
1 TAATTAATATTTATG
18318529 TAATTAATATTTATG
1 TAATTAATATTTATG
18318544 TAATTAA
1 TAATTAA
18318551 AAAAAGTCCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.51
Consensus pattern (15 bp):
TAATTAATATTTATG
Found at i:18318601 original size:126 final size:126
Alignment explanation
Indices: 18318397--18318801 Score: 552
Period size: 132 Copynumber: 3.2 Consensus size: 126
18318387 ACAAATTTTT
18318397 TAATTAATATTTATGTAATTAAAAATAGTCCCTTTAAGATGATTATTAATTATTATTATTGCTAC
1 TAATTAATATTTATGTAATTAAAAATAGTCCC--T--GATGATTATTAATTATTATTATTGCTAC
*
18318462 TGAAAAAATTTTACATTCTTTTACATTATTTTCTATAATTTTACAAAGTTTTTAATTAATATTTA
62 TGACAAAATTTTACATTCTTTTACATT-TTTTCT-TAATTTTACAAAGTTTTTAATTAATATTTA
18318527 TG
125 TG
*
18318529 TAATTAATATTTATGTAATTAAAAAAAGT-CC-GATGATTATTAATTATTATTATTGCTACTGAC
1 TAATTAATATTTATGTAATTAAAAATAGTCCCTGATGATTATTAATTATTATTATTGCTACTGAC
18318592 AAAATTTTACATTCTTTT-C------T-TTAATTTTACAAAG--TTT--TTAA-ATTTATG
66 AAAATTTTACATTCTTTTACATTTTTTCTTAATTTTACAAAGTTTTTAATTAATATTTATG
*
18318640 TAATTAATATTTATGTAATTAAAAATGGTCCCTTTAAGATGATTATTAATTATTATTATTGCTAC
1 TAATTAATATTTATGTAATTAAAAATAGTCCC--T--GATGATTATTAATTATTATTATTGCTAC
* *
18318705 TAACAAAATTTTACACTCTTTTACATTCTTTTCTGTAATTTTACAAAGTTTTTAATTAATATTTA
62 TGACAAAATTTTACATTCTTTTACATT-TTTTCT-TAATTTTACAAAGTTTTTAATTAATATTTA
18318770 TG
125 TG
18318772 TAATTAATATTTATGTAATTAAAAATAGTC
1 TAATTAATATTTATGTAATTAAAAATAGTC
18318802 TCTTTTTCTG
Statistics
Matches: 245, Mismatches: 7, Indels: 42
0.83 0.02 0.14
Matches are distributed among these distances:
111 34 0.14
112 6 0.02
114 3 0.01
116 13 0.05
117 49 0.20
118 2 0.01
125 2 0.01
126 50 0.20
127 13 0.05
129 3 0.01
131 6 0.02
132 64 0.26
ACGTcount: A:0.37, C:0.08, G:0.07, T:0.48
Consensus pattern (126 bp):
TAATTAATATTTATGTAATTAAAAATAGTCCCTGATGATTATTAATTATTATTATTGCTACTGAC
AAAATTTTACATTCTTTTACATTTTTTCTTAATTTTACAAAGTTTTTAATTAATATTTATG
Found at i:18318653 original size:15 final size:14
Alignment explanation
Indices: 18318629--18318662 Score: 59
Period size: 15 Copynumber: 2.4 Consensus size: 14
18318619 TACAAAGTTT
18318629 TTAAATTTATGTAA
1 TTAAATTTATGTAA
18318643 TTAATATTTATGTAA
1 TTAA-ATTTATGTAA
18318658 TTAAA
1 TTAAA
18318663 AATGGTCCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (14 bp):
TTAAATTTATGTAA
Found at i:18318777 original size:15 final size:15
Alignment explanation
Indices: 18318757--18318793 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
18318747 ACAAAGTTTT
18318757 TAATTAATATTTATG
1 TAATTAATATTTATG
18318772 TAATTAATATTTATG
1 TAATTAATATTTATG
18318787 TAATTAA
1 TAATTAA
18318794 AAATAGTCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.51
Consensus pattern (15 bp):
TAATTAATATTTATG
Found at i:18320785 original size:19 final size:19
Alignment explanation
Indices: 18320752--18320807 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
18320742 GGTGGAGAAA
* *
18320752 AGGAACAAGGCACCAGCAG
1 AGGAACAAAGAACCAGCAG
* *
18320771 AGGAAGAAATAACCAGCAG
1 AGGAACAAAGAACCAGCAG
18320790 AGGAACAAAGAACCAGCA
1 AGGAACAAAGAACCAGCA
18320808 CCAGCAGAGG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.50, C:0.21, G:0.27, T:0.02
Consensus pattern (19 bp):
AGGAACAAAGAACCAGCAG
Found at i:18320832 original size:44 final size:44
Alignment explanation
Indices: 18320761--18320845 Score: 127
Period size: 44 Copynumber: 1.9 Consensus size: 44
18320751 AAGGAACAAG
18320761 GCACCAGCAGAGGAAGAAATAACCAGCAGAGGAACAAAGAACCA
1 GCACCAGCAGAGGAAGAAATAACCAGCAGAGGAACAAAGAACCA
** *
18320805 GCACCAGCAGAGG-ATTAATGAAGCAGCAGAGGAACAAAGAA
1 GCACCAGCAGAGGAAGAAAT-AACCAGCAGAGGAACAAAGAA
18320846 GCAACGATGA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 4 0.11
44 33 0.89
ACGTcount: A:0.48, C:0.20, G:0.27, T:0.05
Consensus pattern (44 bp):
GCACCAGCAGAGGAAGAAATAACCAGCAGAGGAACAAAGAACCA
Found at i:18320846 original size:19 final size:19
Alignment explanation
Indices: 18320765--18320848 Score: 60
Period size: 19 Copynumber: 4.1 Consensus size: 19
18320755 AACAAGGCAC
* * *
18320765 CAGCAGAGGAAGAAATAAC
1 CAGCAGAGGAACAAAGAAG
18320784 CAGCAGAGGAACAAAGAACCAG
1 CAGCAGAGGAACAAAG-A--AG
** *
18320806 CACCAGCAGAGGATTAATGAAG
1 ---CAGCAGAGGAACAAAGAAG
18320828 CAGCAGAGGAACAAAGAAG
1 CAGCAGAGGAACAAAGAAG
18320847 CA
1 CA
18320849 ACGATGAGAG
Statistics
Matches: 50, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
19 32 0.64
20 1 0.02
22 3 0.06
24 1 0.02
25 13 0.26
ACGTcount: A:0.49, C:0.19, G:0.27, T:0.05
Consensus pattern (19 bp):
CAGCAGAGGAACAAAGAAG
Found at i:18322250 original size:54 final size:55
Alignment explanation
Indices: 18322144--18322299 Score: 160
Period size: 54 Copynumber: 2.9 Consensus size: 55
18322134 GAACACGCCA
* * * **
18322144 GAAAAAAGAAGCATTT-TGGCGATCAATGAAAAGGAAGACTTTATGGTTATCTAT
1 GAAAAAAGAAGCATTTGTGGCGATCTATGAAAAGGAAGCCTTTGTGGCGATCTAT
18322198 -AAAAAAGAAGTC-TTTGTGGCGATCTATGAAAAGGAAGCCTTTGTGGCGATCTAT
1 GAAAAAAGAAG-CATTTGTGGCGATCTATGAAAAGGAAGCCTTTGTGGCGATCTAT
* * * * * *
18322252 GAAACAA-AAGCTTTTGTAGAGATATATG-AAGGGAATGCCTTTGTGGCG
1 GAAAAAAGAAGCATTTGTGGCGATCTATGAAAAGGAA-GCCTTTGTGGCG
18322300 CACTCTAAAG
Statistics
Matches: 87, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
53 20 0.23
54 62 0.71
55 5 0.06
ACGTcount: A:0.36, C:0.11, G:0.26, T:0.28
Consensus pattern (55 bp):
GAAAAAAGAAGCATTTGTGGCGATCTATGAAAAGGAAGCCTTTGTGGCGATCTAT
Found at i:18322252 original size:27 final size:27
Alignment explanation
Indices: 18322146--18322299 Score: 125
Period size: 27 Copynumber: 5.7 Consensus size: 27
18322136 ACACGCCAGA
* * *
18322146 AAAAAGAAGCATTT-TGGCGATCAATG
1 AAAAGGAAGCCTTTGTGGCGATCTATG
* * ** *
18322172 AAAAGGAAGACTTTATGGTTATCTATA
1 AAAAGGAAGCCTTTGTGGCGATCTATG
* *
18322199 AAAAAGAAGTCTTTGTGGCGATCTATG
1 AAAAGGAAGCCTTTGTGGCGATCTATG
18322226 AAAAGGAAGCCTTTGTGGCGATCTATG
1 AAAAGGAAGCCTTTGTGGCGATCTATG
* * * * *
18322253 AAACA-AAAGCTTTTGTAGAGATATATG
1 AAA-AGGAAGCCTTTGTGGCGATCTATG
*
18322280 -AAGGGAATGCCTTTGTGGCG
1 AAAAGGAA-GCCTTTGTGGCG
18322300 CACTCTAAAG
Statistics
Matches: 99, Mismatches: 25, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
26 15 0.15
27 83 0.84
28 1 0.01
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.28
Consensus pattern (27 bp):
AAAAGGAAGCCTTTGTGGCGATCTATG
Found at i:18325168 original size:5 final size:5
Alignment explanation
Indices: 18325158--18325182 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
18325148 AGTCATCAAG
18325158 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
18325183 AGGTTCAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:18326936 original size:15 final size:15
Alignment explanation
Indices: 18326918--18326972 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
18326908 TTTTGTTTTC
18326918 TTTTTTTATTAATTA
1 TTTTTTTATTAATTA
**
18326933 TTTTTTTATTTTTTA
1 TTTTTTTATTAATTA
* *
18326948 TTTTTCATATTTAATTG
1 TTTTT-TTA-TTAATTA
18326965 TTTTTTTA
1 TTTTTTTA
18326973 AACTAGGTAG
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
15 18 0.58
16 4 0.13
17 9 0.29
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (15 bp):
TTTTTTTATTAATTA
Found at i:18326962 original size:32 final size:31
Alignment explanation
Indices: 18326896--18326972 Score: 84
Period size: 32 Copynumber: 2.4 Consensus size: 31
18326886 TTACAGTTCA
* * *
18326896 AATTAGTTTTTTTTTTGTTTTCTTTTTTTATT
1 AATTA-TTTTTTTATTGTTTTATTTTTATATT
18326928 AATTATTTTTTTATT-TTTTATTTTTCATATTT
1 AATTATTTTTTTATTGTTTTATTTTT-ATA-TT
*
18326960 AATTGTTTTTTTA
1 AATTATTTTTTTA
18326973 AACTAGGTAG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
30 9 0.23
31 11 0.28
32 19 0.49
ACGTcount: A:0.18, C:0.03, G:0.04, T:0.75
Consensus pattern (31 bp):
AATTATTTTTTTATTGTTTTATTTTTATATT
Found at i:18327052 original size:18 final size:17
Alignment explanation
Indices: 18327029--18327075 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 17
18327019 ATGCATATTT
18327029 TTTTTTTAATATAATGTA
1 TTTTTTTAATATAAT-TA
*
18327047 TTTTTTTATATGTAATTA
1 TTTTTTTA-ATATAATTA
18327065 TTTTTTATAAT
1 TTTTTT-TAAT
18327076 CTATACGTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 18 0.69
19 8 0.31
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (17 bp):
TTTTTTTAATATAATTA
Found at i:18327056 original size:15 final size:18
Alignment explanation
Indices: 18327028--18327075 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
18327018 TATGCATATT
* *
18327028 TTTTTTTTAATATAATGTA
1 TTTTTTATAATGTAAT-TA
18327047 TTTTTT-TATATGTAATTA
1 TTTTTTATA-ATGTAATTA
18327065 TTTTTTATAAT
1 TTTTTTATAAT
18327076 CTATACGTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 12 0.46
19 14 0.54
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (18 bp):
TTTTTTATAATGTAATTA
Found at i:18327073 original size:17 final size:19
Alignment explanation
Indices: 18327029--18327070 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
18327019 ATGCATATTT
18327029 TTTTTTTA-ATATAATGTA
1 TTTTTTTATATATAATGTA
*
18327047 TTTTTTTATATGTAAT-TA
1 TTTTTTTATATATAATGTA
18327065 TTTTTT
1 TTTTTT
18327071 ATAATCTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (19 bp):
TTTTTTTATATATAATGTA
Found at i:18327473 original size:4 final size:4
Alignment explanation
Indices: 18327464--18327494 Score: 53
Period size: 4 Copynumber: 7.5 Consensus size: 4
18327454 TTAATTTCGC
18327464 TTAT TTAT TTAT TTAT TTAT TTAT ATTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT -TTAT TT
18327495 CTATACAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 22 0.85
5 4 0.15
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TTAT
Found at i:18327494 original size:9 final size:9
Alignment explanation
Indices: 18327435--18327494 Score: 52
Period size: 9 Copynumber: 6.8 Consensus size: 9
18327425 TTTGCATGTG
*
18327435 ATTATTTTT
1 ATTATTTAT
*
18327444 ATTATGTAT
1 ATTATTTAT
**
18327453 ATTAATTTCG
1 ATT-ATTTAT
*
18327463 CTTATTTAT
1 ATTATTTAT
18327472 -TTATTTAT
1 ATTATTTAT
18327480 -TTATTTAT
1 ATTATTTAT
18327488 ATTATTT
1 ATTATTT
18327495 CTATACAATT
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
8 16 0.39
9 20 0.49
10 5 0.12
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.67
Consensus pattern (9 bp):
ATTATTTAT
Found at i:18331618 original size:51 final size:53
Alignment explanation
Indices: 18331557--18331663 Score: 139
Period size: 51 Copynumber: 2.1 Consensus size: 53
18331547 AGTCAAACCC
* * *
18331557 TTTTACTTTTCTCCAAAAATTTT-ATTTCC-CC-AAACCCTAAAAACTTTTTCT
1 TTTTAATTTTCCCCAAAAATTTTAACTTCCTCCTAAACCCTAAAAACTTTTT-T
* *
18331608 TTTTAATTTTCCCCCAAAATTTTAACTTCCTCCTAAACCCTAATAACTTTTTT
1 TTTTAATTTTCCCCAAAAATTTTAACTTCCTCCTAAACCCTAAAAACTTTTTT
18331661 TTT
1 TTT
18331664 CGAATTTATG
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
51 20 0.42
52 5 0.10
53 6 0.12
54 17 0.35
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (53 bp):
TTTTAATTTTCCCCAAAAATTTTAACTTCCTCCTAAACCCTAAAAACTTTTTT
Found at i:18331670 original size:54 final size:51
Alignment explanation
Indices: 18331563--18331670 Score: 128
Period size: 54 Copynumber: 2.1 Consensus size: 51
18331553 ACCCTTTTAC
* * *
18331563 TTTTCTCCAAAAATTTTATTTCCCCAAACCCTAAAAACTTTTTCTTTTTAA
1 TTTTCCCCAAAAATTTTACTTCCCCAAACCCTAAAAACTTTTTCTTTTGAA
* *
18331614 TTTTCCCCCAAAATTTTAACTTCCTCCTAAACCCTAATAACTTTTT-TTTTCGAA
1 TTTTCCCCAAAAATTTT-ACTTCC-CC-AAACCCTAAAAACTTTTTCTTTT-GAA
18331668 TTT
1 TTT
18331671 ATGTCTACTA
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
51 15 0.31
52 5 0.10
53 6 0.12
54 22 0.46
ACGTcount: A:0.29, C:0.25, G:0.01, T:0.45
Consensus pattern (51 bp):
TTTTCCCCAAAAATTTTACTTCCCCAAACCCTAAAAACTTTTTCTTTTGAA
Found at i:18334687 original size:50 final size:52
Alignment explanation
Indices: 18334597--18334699 Score: 158
Period size: 50 Copynumber: 2.0 Consensus size: 52
18334587 TTACAAATTG
*
18334597 TAAGAAAATATTATTAAATTATTTAATTTTAATCACTTAATTATT-TGATGT
1 TAAGAAAATATTATTAAATTATTTAATTTAAATCACTTAATTATTATGATGT
*
18334648 TAAGAAAAT-TTATTAAATTATTTAAATTTAAAT-AGTTAATTATTATGATGT
1 TAAGAAAATATTATTAAATTATTT-AATTTAAATCACTTAATTATTATGATGT
18334699 T
1 T
18334700 TAGATTATTA
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
50 24 0.50
51 24 0.50
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.49
Consensus pattern (52 bp):
TAAGAAAATATTATTAAATTATTTAATTTAAATCACTTAATTATTATGATGT
Found at i:18336384 original size:63 final size:63
Alignment explanation
Indices: 18336312--18336670 Score: 389
Period size: 63 Copynumber: 5.7 Consensus size: 63
18336302 TCAACTTCGA
* * * *
18336312 TTTAATTTTCACAAGCACCTCAGCACGCGCAATCATTCCCTGCATCAACACATACAACAATAT
1 TTTATTTTTCACAAGCACCTCAACACGCGCAATCATTCCCTACATCAACACATACAACAATAG
* * *
18336375 TTTATTTTTCACAAGCACCTCAACATGCGTAATCATTCCCTACATCAACACATACAACAATAT
1 TTTATTTTTCACAAGCACCTCAACACGCGCAATCATTCCCTACATCAACACATACAACAATAG
* * *
18336438 TTTATTTTTCACAAGCACCTCAACATGCGTAATCATTCCCTACATCAACACATACAACATTAG
1 TTTATTTTTCACAAGCACCTCAACACGCGCAATCATTCCCTACATCAACACATACAACAATAG
* * * * * * *
18336501 TTTATTTTCCACAAGCACCACAACACGCGCAATCATTCACTACATCGACACATTCATCATTAG
1 TTTATTTTTCACAAGCACCTCAACACGCGCAATCATTCCCTACATCAACACATACAACAATAG
* * * * *** * * * ** *
18336564 TTTATTTTACATAAGCACCACAGCACATACAATCATTCCCTGCA-CTAACACATTCATCACCAC
1 TTTATTTTTCACAAGCACCTCAACACGCGCAATCATTCCCTACATC-AACACATACAACAATAG
* **
18336627 TTTATTTTACACAAGCACCAT-AACACGTTCAATCATTCCCTACA
1 TTTATTTTTCACAAGCACC-TCAACACGCGCAATCATTCCCTACA
18336671 CTGACACCTT
Statistics
Matches: 261, Mismatches: 33, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
62 1 0.00
63 260 1.00
ACGTcount: A:0.35, C:0.31, G:0.06, T:0.28
Consensus pattern (63 bp):
TTTATTTTTCACAAGCACCTCAACACGCGCAATCATTCCCTACATCAACACATACAACAATAG
Found at i:18336600 original size:189 final size:188
Alignment explanation
Indices: 18336278--18336670 Score: 431
Period size: 189 Copynumber: 2.1 Consensus size: 188
18336268 ACAGCACACA
* * * * * * *
18336278 CAATCATTCCCCACATCTACACCTTCAACTTCGATTTAATTTTCACAAGCACCTCAGCACGCGCA
1 CAATCATTCCCTACATCAACACATACAACTTAGATTTAATTTTCACAAGCACCACAACACGCGCA
* * * * * *
18336343 ATCATTCCCTGCATCAACACATACAACAATATTTTATTTTTCACAAGCACCTCAACATGCGTAAT
66 ATCATTCACTACATCAACACATACAACAATAGTTTATTTTACACAAGCACCACAACATACG-AAT
* * *
18336408 CATTCCCTACA-TCAACACATACAACAATATTTTATTTTTCACAAGCACC-TCAACATGCG-T
130 CATTCCCTACACT-AACACATACAACAACACTTTATTTTACACAAGCACCAT-AACA--CGTT
18336468 -AATCATTCCCTACATCAACACATACAACATTAG-TTT-ATTTTCCACAAGCACCACAACACGCG
1 CAATCATTCCCTACATCAACACATACAAC-TTAGATTTAATTTT-CACAAGCACCACAACACGCG
* * * * *
18336530 CAATCATTCACTACATCGACACATTCATCATTAGTTTATTTTACATAAGCACCACAGCACATAC-
64 CAATCATTCACTACATCAACACATACAACAATAGTTTATTTTACACAAGCACCACA--ACATACG
* * * *
18336594 AATCATTCCCTGCACTAACACATTCATCACCACTTTATTTTACACAAGCACCATAACACGTT
127 AATCATTCCCTACACTAACACATACAACAACACTTTATTTTACACAAGCACCATAACACGTT
18336656 CAATCATTCCCTACA
1 CAATCATTCCCTACA
18336671 CTGACACCTT
Statistics
Matches: 170, Mismatches: 25, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
187 2 0.01
188 6 0.04
189 152 0.89
190 5 0.03
191 5 0.03
ACGTcount: A:0.34, C:0.32, G:0.06, T:0.28
Consensus pattern (188 bp):
CAATCATTCCCTACATCAACACATACAACTTAGATTTAATTTTCACAAGCACCACAACACGCGCA
ATCATTCACTACATCAACACATACAACAATAGTTTATTTTACACAAGCACCACAACATACGAATC
ATTCCCTACACTAACACATACAACAACACTTTATTTTACACAAGCACCATAACACGTT
Found at i:18337965 original size:24 final size:24
Alignment explanation
Indices: 18337914--18337966 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
18337904 AATAAGCTCG
* * **
18337914 TTTAAAAGCTCGTTTATTGGCTTT
1 TTTATAAGCTCGTTTATTGACTCA
*
18337938 TTTATAAGCTTGTTTATTGACTCA
1 TTTATAAGCTCGTTTATTGACTCA
18337962 TTTAT
1 TTTAT
18337967 TTATTAATGA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.23, C:0.11, G:0.13, T:0.53
Consensus pattern (24 bp):
TTTATAAGCTCGTTTATTGACTCA
Found at i:18339502 original size:14 final size:15
Alignment explanation
Indices: 18339478--18339518 Score: 57
Period size: 14 Copynumber: 2.7 Consensus size: 15
18339468 ACATTAAATT
18339478 AATATAATATTTATC-
1 AATA-AATATTTATCA
18339493 AATAAATATTTATCA
1 AATAAATATTTATCA
18339508 AGATAAATATT
1 A-ATAAATATT
18339519 AAATTTAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 10 0.42
15 5 0.21
16 9 0.38
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.41
Consensus pattern (15 bp):
AATAAATATTTATCA
Found at i:18339624 original size:20 final size:19
Alignment explanation
Indices: 18339573--18339626 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 19
18339563 ATCTACAAAA
18339573 TAATATTAAATT-A-AATT
1 TAATATTAAATTAATAATT
*
18339590 AAATATTAAGA-TAATCAATT
1 TAATATTAA-ATTAAT-AATT
18339610 TAATATTAAATTAATAA
1 TAATATTAAATTAATAA
18339627 AATACTATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
17 9 0.30
18 2 0.07
19 3 0.10
20 16 0.53
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (19 bp):
TAATATTAAATTAATAATT
Found at i:18339671 original size:37 final size:38
Alignment explanation
Indices: 18339573--18339674 Score: 108
Period size: 37 Copynumber: 2.7 Consensus size: 38
18339563 ATCTACAAAA
18339573 TAATATTAAATTAA-ATTAAA-TATTAAGATAATCAATT
1 TAATATTAAATTAATATTAAACTATTAAGATAAT-AATT
* *
18339610 TAATATTAAATTAATA-AAATACTATTTAGATAAGT-A-T
1 TAATATTAAATTAATATTAA-ACTATTAAGATAA-TAATT
18339647 TAA-ATTAAATTTAATATTAAACTATTAA
1 TAATATTAAA-TTAATATTAAACTATTAA
18339675 AATATTATTA
Statistics
Matches: 55, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
36 6 0.11
37 33 0.60
38 5 0.09
39 10 0.18
40 1 0.02
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (38 bp):
TAATATTAAATTAATATTAAACTATTAAGATAATAATT
Found at i:18341281 original size:16 final size:16
Alignment explanation
Indices: 18341257--18341287 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
18341247 CTATGCATGC
18341257 AAAAGATAAAAGACAG
1 AAAAGATAAAAGACAG
*
18341273 AAAATATAAAAGACA
1 AAAAGATAAAAGACA
18341288 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.06, G:0.13, T:0.10
Consensus pattern (16 bp):
AAAAGATAAAAGACAG
Done.