Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 7 of 196
Found at i:1947508 original size:21 final size:21
Alignment explanation
Indices: 1947462--1947513 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
1947452 ATATTTAGCT
1947462 AAAATATATTTTTTAATACTA
1 AAAATATATTTTTTAATACTA
*
1947483 TAAATAT-TTTTATTATATA-TA
1 AAAATATATTTT-TTA-ATACTA
1947504 AAAATA-ATTT
1 AAAATATATTT
1947514 GTTGCCACAT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 4 0.15
21 19 0.73
22 3 0.12
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
AAAATATATTTTTTAATACTA
Found at i:1949334 original size:5 final size:5
Alignment explanation
Indices: 1949326--1949352 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
1949316 AATAATTATA
1949326 ATTGT ATTGT ATTGT ATTGT ATTGT AT
1 ATTGT ATTGT ATTGT ATTGT ATTGT AT
1949353 GACATCTACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.22, C:0.00, G:0.19, T:0.59
Consensus pattern (5 bp):
ATTGT
Found at i:1950988 original size:21 final size:21
Alignment explanation
Indices: 1950964--1951031 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
1950954 GTGAAAATCT
* *
1950964 GACACGCTTGTGTGGCTAGGG
1 GACACGCTCGTGTGGCTAAGG
1950985 GACACAGC-CGTGTGGCTAAGG
1 GACAC-GCTCGTGTGGCTAAGG
* *
1951006 GACACGGTCGTGTGGCCAAGG
1 GACACGCTCGTGTGGCTAAGG
*
1951027 CACAC
1 GACAC
1951032 ACCCATGTGA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
20 1 0.03
21 37 0.93
22 2 0.05
ACGTcount: A:0.21, C:0.25, G:0.38, T:0.16
Consensus pattern (21 bp):
GACACGCTCGTGTGGCTAAGG
Found at i:1954868 original size:24 final size:24
Alignment explanation
Indices: 1954836--1954905 Score: 131
Period size: 24 Copynumber: 2.9 Consensus size: 24
1954826 AACGTCCCTC
1954836 CTTCAGCACCTGGCTTTCCTGGCT
1 CTTCAGCACCTGGCTTTCCTGGCT
1954860 CTTCAGCACCTGGCTTTCCTGGCT
1 CTTCAGCACCTGGCTTTCCTGGCT
*
1954884 CTTCAGCATCTGGCTTTCCTGG
1 CTTCAGCACCTGGCTTTCCTGG
1954906 TTCCTTCCCT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.09, C:0.36, G:0.21, T:0.34
Consensus pattern (24 bp):
CTTCAGCACCTGGCTTTCCTGGCT
Found at i:1957090 original size:59 final size:54
Alignment explanation
Indices: 1956989--1957125 Score: 139
Period size: 59 Copynumber: 2.4 Consensus size: 54
1956979 AAAAACAAGC
* * * *
1956989 TTAGCTACCAAATTAGGAAAAAAATGTCAAGTCCAAGTATCAATTTGGACCCAAAAAAAT
1 TTAG-TACCAAATTA-AAAAAAAATGTCAAGTCCAAATATCAAATT-GA---AAAAAAAA
* * *
1957049 TTAGATACCAAATTAAAAAAAAATGTTAGGTTCAAATATCAAATTGAAAAAAAAA
1 TTAG-TACCAAATTAAAAAAAAATGTCAAGTCCAAATATCAAATTGAAAAAAAAA
*
1957104 TAAGTACCAAATTAAAAAAAAA
1 TTAGTACCAAATTAAAAAAAAA
1957126 GAAAAAAGAA
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
54 18 0.26
55 10 0.15
58 2 0.03
59 24 0.35
60 14 0.21
ACGTcount: A:0.55, C:0.12, G:0.10, T:0.23
Consensus pattern (54 bp):
TTAGTACCAAATTAAAAAAAAATGTCAAGTCCAAATATCAAATTGAAAAAAAAA
Found at i:1957623 original size:14 final size:15
Alignment explanation
Indices: 1957596--1957626 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
1957586 TTTTTTGACA
1957596 AATTTAACAAATCTG
1 AATTTAACAAATCTG
1957611 AATTTAA-AAATCTG
1 AATTTAACAAATCTG
1957625 AA
1 AA
1957627 AAATAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.52, C:0.10, G:0.06, T:0.32
Consensus pattern (15 bp):
AATTTAACAAATCTG
Found at i:1971297 original size:23 final size:23
Alignment explanation
Indices: 1971269--1971362 Score: 134
Period size: 23 Copynumber: 4.1 Consensus size: 23
1971259 ATGTGTGTAT
* *
1971269 CTTTTCATATTCAAGCCTCTTAA
1 CTTTTCATATTCAAGTCTCTTCA
*
1971292 CTTTTCATCTTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
* * *
1971315 CTATTCATATTCAAGTTTTTTCA
1 CTTTTCATATTCAAGTCTCTTCA
1971338 CTTTTCATATTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
1971361 CT
1 CT
1971363 CTTCTAACTT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.22, C:0.26, G:0.04, T:0.48
Consensus pattern (23 bp):
CTTTTCATATTCAAGTCTCTTCA
Found at i:1975800 original size:23 final size:23
Alignment explanation
Indices: 1975772--1975865 Score: 134
Period size: 23 Copynumber: 4.1 Consensus size: 23
1975762 ATGTGTGTAT
* *
1975772 CTTTTCATATTCAAGCCTCTTAA
1 CTTTTCATATTCAAGTCTCTTCA
*
1975795 CTTTTCATCTTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
* * *
1975818 CTATTCATATTCAAGTTTTTTCA
1 CTTTTCATATTCAAGTCTCTTCA
1975841 CTTTTCATATTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
1975864 CT
1 CT
1975866 CTTCTAACTT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.22, C:0.26, G:0.04, T:0.48
Consensus pattern (23 bp):
CTTTTCATATTCAAGTCTCTTCA
Found at i:1978253 original size:12 final size:13
Alignment explanation
Indices: 1978227--1978255 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
1978217 GCTTCGATAC
1978227 TAAATTTATAAAA
1 TAAATTTATAAAA
1978240 TAAATTTA-AAAA
1 TAAATTTATAAAA
1978252 TAAA
1 TAAA
1978256 AAACAGCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (13 bp):
TAAATTTATAAAA
Found at i:1978470 original size:19 final size:19
Alignment explanation
Indices: 1978448--1978484 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
1978438 CATTCAATAG
*
1978448 AAACCAAAAAGTTCAACAA
1 AAACCAAAAACTTCAACAA
*
1978467 AAACCCAAAACTTCAACA
1 AAACCAAAAACTTCAACA
1978485 GAAATAGATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.59, C:0.27, G:0.03, T:0.11
Consensus pattern (19 bp):
AAACCAAAAACTTCAACAA
Found at i:1978734 original size:13 final size:13
Alignment explanation
Indices: 1978716--1978740 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1978706 AAATTATCCA
1978716 ACCCAACCCAATT
1 ACCCAACCCAATT
1978729 ACCCAACCCAAT
1 ACCCAACCCAAT
1978741 AAAACTAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:1978821 original size:38 final size:39
Alignment explanation
Indices: 1978721--1978837 Score: 209
Period size: 39 Copynumber: 3.0 Consensus size: 39
1978711 ATCCAACCCA
1978721 ACCCAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
1 ACCCAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
*
1978760 ACCTAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
1 ACCCAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
*
1978799 ACCCAATTA-CCAACCCAATAAAAATAAAACTAAAGTCT
1 ACCCAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
1978837 A
1 A
1978838 ACTCTTAAGT
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
38 29 0.39
39 46 0.61
ACGTcount: A:0.50, C:0.28, G:0.03, T:0.19
Consensus pattern (39 bp):
ACCCAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
Found at i:1978989 original size:17 final size:17
Alignment explanation
Indices: 1978969--1979031 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
1978959 TAATTTCAAG
1978969 AATTATGTAATGTTTTT
1 AATTATGTAATGTTTTT
* ***
1978986 AATTATGTAGTGATTCAA
1 AATTATGTAATG-TTTTT
*
1979004 AGACTTATGTAATATTTTT
1 A-A-TTATGTAATGTTTTT
1979023 AATTATGTA
1 AATTATGTA
1979032 GTGATTCAAT
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
17 18 0.53
18 4 0.12
19 4 0.12
20 8 0.24
ACGTcount: A:0.35, C:0.03, G:0.13, T:0.49
Consensus pattern (17 bp):
AATTATGTAATGTTTTT
Found at i:1978993 original size:37 final size:37
Alignment explanation
Indices: 1978966--1979040 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
1978956 TGTTAATTTC
* *
1978966 AAGAATTATGTAATGTTTTTAATTATGTAGTGATTCA
1 AAGAATTATGTAATATTTTTAATTATGTAGTAATTCA
* *
1979003 AAGACTTATGTAATATTTTTAATTATGTAGTGATTCA
1 AAGAATTATGTAATATTTTTAATTATGTAGTAATTCA
1979040 A
1 A
1979041 TTCGGGTAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.36, C:0.04, G:0.15, T:0.45
Consensus pattern (37 bp):
AAGAATTATGTAATATTTTTAATTATGTAGTAATTCA
Found at i:1983830 original size:7 final size:7
Alignment explanation
Indices: 1983812--1983857 Score: 56
Period size: 7 Copynumber: 6.6 Consensus size: 7
1983802 TGATTTAAAT
*
1983812 CTAAGTC
1 CTAAGCC
1983819 CTAAGCC
1 CTAAGCC
*
1983826 TTAAGCC
1 CTAAGCC
1983833 CTAAGCC
1 CTAAGCC
*
1983840 CTAAACC
1 CTAAGCC
*
1983847 CTAAACC
1 CTAAGCC
1983854 CTAA
1 CTAA
1983858 ACCTTCCCCC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 35 1.00
ACGTcount: A:0.35, C:0.37, G:0.09, T:0.20
Consensus pattern (7 bp):
CTAAGCC
Found at i:1989267 original size:31 final size:29
Alignment explanation
Indices: 1989232--1989308 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
1989222 TTAATAGCTT
*
1989232 AGTGACTAAAATGTTACAACACGATAACATA
1 AGTGACTAAAATGTAACAACAC-A-AACATA
* * ***
1989263 AGTGACAAAAACGTAACATTTCAAACATA
1 AGTGACTAAAATGTAACAACACAAACATA
1989292 AGTGACTAAAATGTAAC
1 AGTGACTAAAATGTAAC
1989309 CTAAGGTAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
29 21 0.55
30 1 0.03
31 16 0.42
ACGTcount: A:0.49, C:0.16, G:0.13, T:0.22
Consensus pattern (29 bp):
AGTGACTAAAATGTAACAACACAAACATA
Found at i:1995747 original size:18 final size:18
Alignment explanation
Indices: 1995720--1995757 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
1995710 AACTGACCGA
*
1995720 TTAACTGAATTCAA-TCGG
1 TTAACCGAATT-AATTCGG
1995738 TTAACCGAATTAATTCGG
1 TTAACCGAATTAATTCGG
1995756 TT
1 TT
1995758 TTACCCAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 2 0.11
18 16 0.89
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.37
Consensus pattern (18 bp):
TTAACCGAATTAATTCGG
Found at i:2003794 original size:20 final size:20
Alignment explanation
Indices: 2003769--2003806 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
2003759 GGAGCAATTG
*
2003769 AATCAATTTGATTAAAATCA
1 AATCAAATTGATTAAAATCA
2003789 AATCAAATTGATTAAAAT
1 AATCAAATTGATTAAAAT
2003807 TATCTCCTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.53, C:0.08, G:0.05, T:0.34
Consensus pattern (20 bp):
AATCAAATTGATTAAAATCA
Found at i:2005636 original size:59 final size:59
Alignment explanation
Indices: 2005565--2005680 Score: 153
Period size: 59 Copynumber: 2.0 Consensus size: 59
2005555 AAATTTGAGA
** * * *
2005565 CCTAATTAAAA-TTTCCAAAACTTTAAGGGAAAAAATTAAAATTTCCAAAAATTTTGGGG
1 CCTAATTAAAATTTTAAAAAAATTCAAGGG-AAAAATCAAAATTTCCAAAAATTTTGGGG
* *
2005624 CCTAATTAAAATTTTAAAAAAATTCAAGGGAGAAATCAAAATTTCCCAAAATTTTGG
1 CCTAATTAAAATTTTAAAAAAATTCAAGGGAAAAATCAAAATTTCCAAAAATTTTGG
2005681 AGGGACTCCC
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
59 35 0.71
60 14 0.29
ACGTcount: A:0.47, C:0.12, G:0.11, T:0.30
Consensus pattern (59 bp):
CCTAATTAAAATTTTAAAAAAATTCAAGGGAAAAATCAAAATTTCCAAAAATTTTGGGG
Found at i:2006838 original size:121 final size:121
Alignment explanation
Indices: 2006701--2006989 Score: 469
Period size: 121 Copynumber: 2.4 Consensus size: 121
2006691 TAATCATATC
*
2006701 TTAACATAATTTTTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT-
1 TTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTA
*
2006765 AGATATTCTTAATATTAAAATACTAAAATCATAATATATAATACTATAAAATATAAT
66 AGATATTCTT-ATATGAAAATACTAAAATCATAATATATAATACTATAAAATATAAT
*
2006822 TTAACATAATTATTATTAAATAAAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTA
1 TTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT-
* **
2006887 AATATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAAT
65 AAGATATTCTTATATGAAAATACTAAAATCATAATATATAATACTATAAAATATAAT
*
2006944 TTAAAATAA-TA--ATTAAATATAATTTAATAAAAATATATAATTTAAT
1 TTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAAT
2006990 CTAAAGTTTG
Statistics
Matches: 158, Mismatches: 8, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
119 34 0.22
121 64 0.41
122 51 0.32
123 9 0.06
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (121 bp):
TTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTA
AGATATTCTTATATGAAAATACTAAAATCATAATATATAATACTATAAAATATAAT
Found at i:2006893 original size:31 final size:31
Alignment explanation
Indices: 2006734--2006893 Score: 88
Period size: 31 Copynumber: 5.3 Consensus size: 31
2006724 AATTTAATAA
2006734 AAATATATAATTTAATAAAATTCTTAATATT
1 AAATATATAATTTAATAAAATTCTTAATATT
* * * * * *
2006765 AGATAT-T-CTTAATATTAAAATAC-TAAAATC
1 AAATATATAATT--TAATAAAATTCTTAATATT
* *
2006795 ATAATATATAATACT-ATAAAA-T-ATAAT-TT
1 A-AATATATAAT-TTAATAAAATTCTTAATATT
* * *
2006824 AACATAATTATTATTAAATAAAA-T-TTAATA-A
1 AA-AT-A-TATAATTTAATAAAATTCTTAATATT
2006855 AAATATATAATTTAATAAAATTCTTAATATT
1 AAATATATAATTTAATAAAATTCTTAATATT
2006886 AAATATAT
1 AAATATAT
2006894 TCTTATATGA
Statistics
Matches: 93, Mismatches: 21, Indels: 30
0.65 0.15 0.21
Matches are distributed among these distances:
28 14 0.15
29 8 0.09
30 19 0.20
31 49 0.53
32 2 0.02
33 1 0.01
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (31 bp):
AAATATATAATTTAATAAAATTCTTAATATT
Found at i:2006957 original size:13 final size:12
Alignment explanation
Indices: 2006933--2006970 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
2006923 TATAATACTA
2006933 TAAAATATAATT
1 TAAAATATAATT
2006945 TAAAATAATAA-T
1 TAAAAT-ATAATT
2006957 T-AAATATAATT
1 TAAAATATAATT
2006968 TAA
1 TAA
2006971 TAAAAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
10 4 0.17
11 6 0.26
12 9 0.39
13 4 0.17
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
TAAAATATAATT
Found at i:2010801 original size:89 final size:90
Alignment explanation
Indices: 2010631--2010825 Score: 234
Period size: 89 Copynumber: 2.2 Consensus size: 90
2010621 TGTGGCTGAG
* * * * *
2010631 CCACCAGTG-TTGCAGGTTAATATACTGCTAGCAGTTGTGATTACACAACGAGTTTGCAGATAAA
1 CCACCAGTGTTTGCAAGTTAATACACTGCCAGCACTTGTGAATACACAACGAGTTTGCAGATAAA
*
2010695 AGATGCCAGTATGAATTATGGAT-A
66 AGATGCCAGTATAAATTATGGATAA
* * * *
2010719 CCACCAGTGTTTGCAAGTTAATACGCTGCCAGTACTTGTGAATACACAACTTAG-TTGCAGATTA
1 CCACCAGTGTTTGCAAGTTAATACACTGCCAGCACTTGTGAATACACAAC-GAGTTTGCAGATAA
* **
2010783 AAGCTGCTGGTATAAATTATGGATAAA
65 AAGATGCCAGTATAAATTATGGAT-AA
2010810 CCACCAGTGTTTGCAA
1 CCACCAGTGTTTGCAA
2010826 ATTATTAAAC
Statistics
Matches: 90, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
88 9 0.10
89 62 0.69
90 2 0.02
91 17 0.19
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (90 bp):
CCACCAGTGTTTGCAAGTTAATACACTGCCAGCACTTGTGAATACACAACGAGTTTGCAGATAAA
AGATGCCAGTATAAATTATGGATAA
Found at i:2011690 original size:22 final size:22
Alignment explanation
Indices: 2011665--2011711 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
2011655 CTCAGTGACT
*
2011665 AAAATGTAATTTAAGAAAAATA
1 AAAATGTAATTTAAGAAAAACA
2011687 AAAATGTAATTTAAGAAAAACA
1 AAAATGTAATTTAAGAAAAACA
2011709 AAA
1 AAA
2011712 GTGACTGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.66, C:0.02, G:0.09, T:0.23
Consensus pattern (22 bp):
AAAATGTAATTTAAGAAAAACA
Found at i:2039224 original size:14 final size:15
Alignment explanation
Indices: 2039200--2039229 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
2039190 CTATTTCCCA
2039200 AAATATTATTTATTT
1 AAATATTATTTATTT
2039215 AAAT-TTATTTATTT
1 AAATATTATTTATTT
2039229 A
1 A
2039230 TTTATTCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
AAATATTATTTATTT
Found at i:2041301 original size:21 final size:21
Alignment explanation
Indices: 2041261--2041301 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
2041251 TCGTGATTTA
*
2041261 AAAAGTTATTCCTTTTAAAAG
1 AAAAGTTATTCCTTTCAAAAG
2041282 AAAAGTTATTACC-TTCAAAA
1 AAAAGTTATT-CCTTTCAAAA
2041302 CCTTGTTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.46, C:0.12, G:0.07, T:0.34
Consensus pattern (21 bp):
AAAAGTTATTCCTTTCAAAAG
Found at i:2041926 original size:27 final size:27
Alignment explanation
Indices: 2041885--2041938 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
2041875 CAGTAACAGA
*
2041885 ACAGAACAATGTGGGCTTTAGCCCAAT
1 ACAGAACAATGTGGGCCTTAGCCCAAT
2041912 ACAGAACAA-GATGGGCCTTAGCCCAAT
1 ACAGAACAATG-TGGGCCTTAGCCCAAT
2041939 GCCATATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 1 0.04
27 24 0.96
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.19
Consensus pattern (27 bp):
ACAGAACAATGTGGGCCTTAGCCCAAT
Found at i:2042448 original size:27 final size:27
Alignment explanation
Indices: 2042391--2042549 Score: 121
Period size: 27 Copynumber: 5.9 Consensus size: 27
2042381 ACCTTATAAA
* * * *
2042391 GGTATTTCGGTAATTTTCCAAACTAAA
1 GGTATTTCAGTAATTTTGCAAACTCAG
*
2042418 GGTATTTCAGTAATTTTGCAAATTCAG
1 GGTATTTCAGTAATTTTGCAAACTCAG
** *
2042445 GGTACTTT--GTTAATTTCACAAACTGAG
1 GGTA-TTTCAG-TAATTTTGCAAACTCAG
*
2042472 GGTATTTTAGTAATTTTGCAAA-TCGAG
1 GGTATTTCAGTAATTTTGCAAACTC-AG
* * *
2042499 GGTACTTC-GATAATTTTAC-AAGTCGAG
1 GGTATTTCAG-TAATTTTGCAAACTC-AG
*
2042526 GGTATTTCAGTAATTTTGTAAACT
1 GGTATTTCAGTAATTTTGCAAACT
2042550 AAAGTATTCT
Statistics
Matches: 104, Mismatches: 19, Indels: 17
0.74 0.14 0.12
Matches are distributed among these distances:
26 8 0.08
27 88 0.85
28 8 0.08
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTGCAAACTCAG
Found at i:2042460 original size:54 final size:54
Alignment explanation
Indices: 2042391--2042543 Score: 177
Period size: 54 Copynumber: 2.8 Consensus size: 54
2042381 ACCTTATAAA
* * * *
2042391 GGTATTTCGGTAATTTTCCAAACTAAAGGTATTTCAGTAATTTTGCAAATTC-AG
1 GGTACTTCGATAATTTTCCAAACTGAGGGTATTTCAGTAATTTTGCAAA-TCGAG
* * *
2042445 GGTACTTTGTTAA-TTTCACAAACTGAGGGTATTTTAGTAATTTTGCAAATCGAG
1 GGTACTTCGATAATTTTC-CAAACTGAGGGTATTTCAGTAATTTTGCAAATCGAG
* *
2042499 GGTACTTCGATAATTTTAC-AAGTCGAGGGTATTTCAGTAATTTTG
1 GGTACTTCGATAATTTTCCAAACT-GAGGGTATTTCAGTAATTTTG
2042544 TAAACTAAAG
Statistics
Matches: 84, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
53 9 0.11
54 72 0.86
55 3 0.04
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (54 bp):
GGTACTTCGATAATTTTCCAAACTGAGGGTATTTCAGTAATTTTGCAAATCGAG
Found at i:2042654 original size:63 final size:63
Alignment explanation
Indices: 2042555--2042681 Score: 191
Period size: 63 Copynumber: 2.0 Consensus size: 63
2042545 AAACTAAAGT
* * * *
2042555 ATTCTAAACAGAGATAATGATGCCAATTGGCCTAAGGCCCATTCTCGACCCAAATGAGCCCAC
1 ATTCTAAACAGAGATAACGATGCCAAATAGCCTAAGGCCCATTCTAGACCCAAATGAGCCCAC
* * *
2042618 ATTCTAAACAGAGATAACGATGCGAAATAGCCTAAGGCCCATTCTAGGCCCAAATGGGCCCAC
1 ATTCTAAACAGAGATAACGATGCCAAATAGCCTAAGGCCCATTCTAGACCCAAATGAGCCCAC
2042681 A
1 A
2042682 CCCTCATATG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
63 57 1.00
ACGTcount: A:0.35, C:0.28, G:0.19, T:0.19
Consensus pattern (63 bp):
ATTCTAAACAGAGATAACGATGCCAAATAGCCTAAGGCCCATTCTAGACCCAAATGAGCCCAC
Found at i:2045677 original size:181 final size:181
Alignment explanation
Indices: 2045353--2045718 Score: 612
Period size: 181 Copynumber: 2.0 Consensus size: 181
2045343 ATGAGATCGG
2045353 ATTTGAAAATAATTTTGAAATTGACTTCAATTGGAAACTAAGGACCAATTTGGAGAAAGGAGGAA
1 ATTTGAAAATAATTTTGAAATTGACTTCAATTGGAAACTAAGGACCAATTTGGAGAAAGGAGGAA
*
2045418 ACTATAGGTGGTCAAAGGGTCAAAAGCCCAAATTTTAAAAATTGGTTGGCTATATAAGACCACCC
66 ACTATAGGTGGT--AAGGGTCAAAAGCCCAAATTTTAAAAATTGATTGGCTATATAAGACCACCC
2045483 ACAATCCCTTCCCTCCACACTTTCAACCATTTCAAAACTCTGTTAGATCTGAAA
129 ACAATCCCTTCCCTCCACACTTTCAACCATTTCAAAACTCTGTTAGATCT-AAA
*
2045537 ATTTGAAAATAATTTTGAGATTTG-CTTCAATTGGAAACTAAGGACCAATTTGGA-AAAGGGAGG
1 ATTTGAAAATAATTTTGA-AATTGACTTCAATTGGAAACTAAGGACCAATTTGGAGAAA-GGAGG
* *
2045600 AAACTATATGTGGT-AGGGTCAAAAGCCCAATTTTTAAAAATTGATTGGCTATATAAGACCACCC
64 AAACTATAGGTGGTAAGGGTCAAAAGCCCAAATTTTAAAAATTGATTGGCTATATAAGACCACCC
* *
2045664 ACAGTCCCTTCCCTCCACACTTTCAACCATTTCAAAACTTTGTTAGATCTAAA
129 ACAATCCCTTCCCTCCACACTTTCAACCATTTCAAAACTCTGTTAGATCTAAA
2045717 AT
1 AT
2045719 CAAGAGTTTT
Statistics
Matches: 174, Mismatches: 6, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
180 5 0.03
181 96 0.55
183 3 0.02
184 66 0.38
185 4 0.02
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.29
Consensus pattern (181 bp):
ATTTGAAAATAATTTTGAAATTGACTTCAATTGGAAACTAAGGACCAATTTGGAGAAAGGAGGAA
ACTATAGGTGGTAAGGGTCAAAAGCCCAAATTTTAAAAATTGATTGGCTATATAAGACCACCCAC
AATCCCTTCCCTCCACACTTTCAACCATTTCAAAACTCTGTTAGATCTAAA
Found at i:2047024 original size:25 final size:23
Alignment explanation
Indices: 2046979--2047024 Score: 56
Period size: 25 Copynumber: 1.9 Consensus size: 23
2046969 TATAGAGATA
* *
2046979 ATGAATAACATTTGTTTATTTCT
1 ATGAATAACATTTGATCATTTCT
2047002 ATGAATAATCAATTTGATCATTT
1 ATGAATAA-C-ATTTGATCATTT
2047025 TAGTAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 8 0.42
24 1 0.05
25 10 0.53
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.48
Consensus pattern (23 bp):
ATGAATAACATTTGATCATTTCT
Found at i:2047639 original size:16 final size:16
Alignment explanation
Indices: 2047604--2047642 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
2047594 TTCTTAAAGA
*
2047604 AAACAAA-TTAAACAT
1 AAACAAACTTAAAAAT
*
2047619 GAACAAACTTAAAAAT
1 AAACAAACTTAAAAAT
2047635 AAACAAAC
1 AAACAAAC
2047643 GAACATGAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.67, C:0.15, G:0.03, T:0.15
Consensus pattern (16 bp):
AAACAAACTTAAAAAT
Found at i:2057927 original size:31 final size:30
Alignment explanation
Indices: 2057892--2057951 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
2057882 AGAGGTGGGA
*
2057892 TGGGAAGGGAATAAAAGTTTTAGGGGAAAAG
1 TGGGAA-GGAATAAAAATTTTAGGGGAAAAG
* * *
2057923 TGGGAATGAGTAAAAATTTTGGGGGAAAA
1 TGGGAAGGAATAAAAATTTTAGGGGAAAA
2057952 TAAAAGGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 19 0.76
31 6 0.24
ACGTcount: A:0.42, C:0.00, G:0.37, T:0.22
Consensus pattern (30 bp):
TGGGAAGGAATAAAAATTTTAGGGGAAAAG
Found at i:2071446 original size:29 final size:30
Alignment explanation
Indices: 2071387--2071444 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
2071377 TCCGAGCCTT
*
2071387 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
2071417 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
2071445 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:2071674 original size:13 final size:13
Alignment explanation
Indices: 2071656--2071687 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
2071646 TTTCCAGCAA
2071656 TTATGAATTTATT
1 TTATGAATTTATT
2071669 TTATGAATTTATT
1 TTATGAATTTATT
*
2071682 TGATGA
1 TTATGA
2071688 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:2071895 original size:50 final size:50
Alignment explanation
Indices: 2071782--2072023 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
2071772 ATTTGGGTAA
* * *
2071782 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
2071838 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
2071888 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
2071938 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
2071988 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
2072024 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:2071971 original size:100 final size:103
Alignment explanation
Indices: 2071782--2072031 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
2071772 ATTTGGGTAA
2071782 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
2071847 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
2071888 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
2071950 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
2071988 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
2072032 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:2078982 original size:29 final size:30
Alignment explanation
Indices: 2078923--2078980 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
2078913 TCCGAGCCTT
*
2078923 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
2078953 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
2078981 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:2079209 original size:13 final size:13
Alignment explanation
Indices: 2079191--2079222 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
2079181 TTTCCAGCAA
2079191 TTATGAATTTATT
1 TTATGAATTTATT
2079204 TTATGAATTTATT
1 TTATGAATTTATT
*
2079217 TGATGA
1 TTATGA
2079223 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:2079488 original size:50 final size:51
Alignment explanation
Indices: 2079317--2079563 Score: 279
Period size: 50 Copynumber: 4.8 Consensus size: 51
2079307 ATTTGGGTAA
* *
2079317 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC----GATCACG
* * *
2079373 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCA-TGG-GCCGA-GACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATCACG
* * *
2079421 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA-GATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATCACG
* * *
2079471 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATCACG
** *
2079521 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
2079564 TGTTATTATC
Statistics
Matches: 166, Mismatches: 21, Indels: 13
0.83 0.10 0.06
Matches are distributed among these distances:
48 36 0.22
49 6 0.04
50 51 0.31
51 34 0.20
53 2 0.01
55 3 0.02
56 34 0.20
ACGTcount: A:0.26, C:0.24, G:0.30, T:0.21
Consensus pattern (51 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATCACG
Found at i:2079504 original size:98 final size:103
Alignment explanation
Indices: 2079317--2079564 Score: 353
Period size: 98 Copynumber: 2.4 Consensus size: 103
2079307 ATTTGGGTAA
2079317 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* * *
2079382 CTGTAAGACCATGTCTGGGACATGGCATGGGC-CGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* * *
2079421 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
2079483 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
2079521 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
2079565 GTTATTATCA
Statistics
Matches: 131, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
98 43 0.33
99 4 0.03
100 5 0.04
101 37 0.28
103 2 0.02
104 40 0.31
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:2085385 original size:21 final size:21
Alignment explanation
Indices: 2085361--2085402 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
2085351 AGTTAATAAA
2085361 ATTTAATATTCAAAATTAATT
1 ATTTAATATTCAAAATTAATT
* *
2085382 ATTTTATGTTCAAAATTAATT
1 ATTTAATATTCAAAATTAATT
2085403 TAATTAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.43, C:0.05, G:0.02, T:0.50
Consensus pattern (21 bp):
ATTTAATATTCAAAATTAATT
Found at i:2087396 original size:16 final size:16
Alignment explanation
Indices: 2087352--2087396 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 16
2087342 TTTTAAATGA
*
2087352 TTTAATATAATGGTA-
1 TTTAATATAATGATAT
*
2087367 -TTAATA-AATAATAT
1 TTTAATATAATGATAT
2087381 TTTAATATAATGATAT
1 TTTAATATAATGATAT
2087397 ATGAAATATT
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
13 5 0.21
14 6 0.25
15 6 0.25
16 7 0.29
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (16 bp):
TTTAATATAATGATAT
Found at i:2087437 original size:33 final size:33
Alignment explanation
Indices: 2087376--2087438 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 33
2087366 ATTAATAAAT
* * * **
2087376 AATATTTTAATATAATGATATATGAAATATTTA
1 AATAATTTAATATAATAATACACAAAATATTTA
2087409 AATAATTTAATATAATAATACACAAAATAT
1 AATAATTTAATATAATAATACACAAAATAT
2087439 AAATTAATTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 25 1.00
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (33 bp):
AATAATTTAATATAATAATACACAAAATATTTA
Found at i:2089079 original size:21 final size:21
Alignment explanation
Indices: 2089053--2089092 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
2089043 CATAAGCTTT
2089053 CTCTAGATCCACTTTTAATGA
1 CTCTAGATCCACTTTTAATGA
2089074 CTCTAGATCCACTTTTAAT
1 CTCTAGATCCACTTTTAAT
2089093 AGTCATCCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (21 bp):
CTCTAGATCCACTTTTAATGA
Found at i:2112534 original size:33 final size:33
Alignment explanation
Indices: 2112434--2112551 Score: 95
Period size: 33 Copynumber: 3.7 Consensus size: 33
2112424 TCTTTTAGGC
* * *
2112434 TTAGTAGTTAATCTTCTTCACCATTATTAAGGT
1 TTAGTAGTTAGTCTTTTTCACCATTATTAGGGT
** * *
2112467 TTAGTTCTTAG-CTTTTTCTA--GTT-TT-GGTT
1 TTAGTAGTTAGTCTTTTTC-ACCATTATTAGGGT
2112496 GTTAGTAGTTAGTCTTTTTCACCATTATTAGGGT
1 -TTAGTAGTTAGTCTTTTTCACCATTATTAGGGT
*
2112530 TTAGTAGTT-GACATTTTTCACC
1 TTAGTAGTTAGTC-TTTTTCACC
2112552 TCTATTACTA
Statistics
Matches: 65, Mismatches: 12, Indels: 16
0.70 0.13 0.17
Matches are distributed among these distances:
29 2 0.03
30 12 0.18
31 9 0.14
32 10 0.15
33 29 0.45
34 3 0.05
ACGTcount: A:0.20, C:0.14, G:0.16, T:0.50
Consensus pattern (33 bp):
TTAGTAGTTAGTCTTTTTCACCATTATTAGGGT
Found at i:2113257 original size:27 final size:27
Alignment explanation
Indices: 2113227--2113278 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
2113217 GGTTCGATCA
*
2113227 TTGGAATAATCGAGTGTTCCTTTGTCT
1 TTGGAATAATCGAGTGTTCCATTGTCT
* *
2113254 TTGGAATACTCGGGTGTTCCATTGT
1 TTGGAATAATCGAGTGTTCCATTGT
2113279 AACACCATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.17, C:0.15, G:0.25, T:0.42
Consensus pattern (27 bp):
TTGGAATAATCGAGTGTTCCATTGTCT
Found at i:2116796 original size:30 final size:31
Alignment explanation
Indices: 2116757--2116816 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
2116747 GGAGGTGGGA
*
2116757 TGGGAAGGGAATAAAAGTTTTAGGGAAAAAG
1 TGGGAAGGGAATAAAAATTTTAGGGAAAAAG
* * *
2116788 TGGG-AGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAAGGGAATAAAAATTTTAGGGAAAAA
2116817 TAAAAGGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.42, C:0.00, G:0.38, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTAGGGAAAAAG
Found at i:2117621 original size:17 final size:19
Alignment explanation
Indices: 2117599--2117633 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
2117589 CCAATTCAAA
2117599 ATCAATTT-CA-TATTTTC
1 ATCAATTTACACTATTTTC
2117616 ATCAATTTACACTATTTT
1 ATCAATTTACACTATTTT
2117634 TAATTTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 2 0.12
19 6 0.38
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.51
Consensus pattern (19 bp):
ATCAATTTACACTATTTTC
Found at i:2117941 original size:17 final size:17
Alignment explanation
Indices: 2117919--2117951 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
2117909 CAACCAATTG
2117919 TCATTTTATACAATTTT
1 TCATTTTATACAATTTT
*
2117936 TCATTTTATTCAATTT
1 TCATTTTATACAATTT
2117952 AGTCCCTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.12, G:0.00, T:0.61
Consensus pattern (17 bp):
TCATTTTATACAATTTT
Found at i:2125037 original size:15 final size:14
Alignment explanation
Indices: 2125010--2125036 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
2125000 TTGTTTTATT
2125010 GAAAATAATTTTTA
1 GAAAATAATTTTTA
2125024 GAAAATAATTTTT
1 GAAAATAATTTTT
2125037 TGTATTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (14 bp):
GAAAATAATTTTTA
Found at i:2130731 original size:15 final size:15
Alignment explanation
Indices: 2130711--2130765 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
2130701 ATTCAATATT
2130711 AATATTTTAATAATA
1 AATATTTTAATAATA
* *
2130726 AATATTTATTACAATTA
1 AATATTT-TAATAA-TA
* *
2130743 TATATATTAATAATA
1 AATATTTTAATAATA
2130758 AATATTTT
1 AATATTTT
2130766 GTAGTATAAA
Statistics
Matches: 30, Mismatches: 8, Indels: 4
0.71 0.19 0.10
Matches are distributed among these distances:
15 15 0.50
16 8 0.27
17 7 0.23
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:2134646 original size:45 final size:45
Alignment explanation
Indices: 2134582--2134698 Score: 198
Period size: 45 Copynumber: 2.6 Consensus size: 45
2134572 TTGGTTGGGC
*
2134582 TGTAATTGAAATAGGGTTGTAATAATAATTCAATTGTTTGGTTGAA
1 TGTAA-TGAAATAGAGTTGTAATAATAATTCAATTGTTTGGTTGAA
*
2134628 TGTAATGAAATAGAGTTGTAATAATAATTTAATTGTTTGGTTGAA
1 TGTAATGAAATAGAGTTGTAATAATAATTCAATTGTTTGGTTGAA
*
2134673 TGGAATGAAATAGAGTTGTAATAATA
1 TGTAATGAAATAGAGTTGTAATAATA
2134699 TTCTTGTGTT
Statistics
Matches: 68, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
45 63 0.93
46 5 0.07
ACGTcount: A:0.38, C:0.01, G:0.21, T:0.39
Consensus pattern (45 bp):
TGTAATGAAATAGAGTTGTAATAATAATTCAATTGTTTGGTTGAA
Found at i:2134883 original size:12 final size:12
Alignment explanation
Indices: 2134868--2134901 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
2134858 AATATATAAT
*
2134868 TTAATAAAATTC
1 TTAATAAAATTA
2134880 TTAATAAAATTA
1 TTAATAAAATTA
*
2134892 TTATTAAAAT
1 TTAATAAAAT
2134902 ATGAATTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (12 bp):
TTAATAAAATTA
Found at i:2147789 original size:27 final size:27
Alignment explanation
Indices: 2147714--2147795 Score: 85
Period size: 27 Copynumber: 3.0 Consensus size: 27
2147704 TAATACAAAG
* *
2147714 TAGTGGCGCCTATCTCAGAGGCGCCAA
1 TAGTGGTGCCTATCTGAGAGGCGCCAA
* * *
2147741 TGGTGGTGCCTATCTGATAGGCGCCAT
1 TAGTGGTGCCTATCTGAGAGGCGCCAA
* *
2147768 TAGTGGTGCC-ATGTTGAGAGGCACCAA
1 TAGTGGTGCCTAT-CTGAGAGGCGCCAA
2147795 T
1 T
2147796 GATCTTATTT
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
26 2 0.05
27 42 0.95
ACGTcount: A:0.21, C:0.23, G:0.32, T:0.24
Consensus pattern (27 bp):
TAGTGGTGCCTATCTGAGAGGCGCCAA
Found at i:2151191 original size:27 final size:27
Alignment explanation
Indices: 2151143--2151222 Score: 72
Period size: 27 Copynumber: 3.0 Consensus size: 27
2151133 ATAAGACCAT
* *
2151143 TGGCGCCTCTCA-ACATGACACCACTAA
1 TGGCGCCTCTCAGATA-GGCACCACTAA
* * * *
2151170 TGGCGCTTGTCAGATAGGCACCACCAT
1 TGGCGCCTCTCAGATAGGCACCACTAA
* *
2151197 TGGTGCCTCTGAGATAGGCACCACTA
1 TGGCGCCTCTCAGATAGGCACCACTA
2151223 CTTTGTATTA
Statistics
Matches: 41, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
27 39 0.95
28 2 0.05
ACGTcount: A:0.25, C:0.31, G:0.23, T:0.21
Consensus pattern (27 bp):
TGGCGCCTCTCAGATAGGCACCACTAA
Found at i:2154341 original size:24 final size:24
Alignment explanation
Indices: 2154314--2154360 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
2154304 ATTGAAATGG
2154314 ATTG-ATTTAGTATGTGA-TGAATTT
1 ATTGAATTTA-TAT-TGATTGAATTT
2154338 ATTGAATTTATATTGATTGAATT
1 ATTGAATTTATATTGATTGAATT
2154361 GATATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 13 0.62
25 5 0.24
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:2154382 original size:21 final size:21
Alignment explanation
Indices: 2154331--2154384 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
2154321 TAGTATGTGA
* *
2154331 TGAATTTATTGA-ATTTATAT
1 TGAATATATTGATATATATAT
*
2154351 TGATTGA-ATTGATATATATAT
1 TGAAT-ATATTGATATATATAT
2154372 TGAATATATTGAT
1 TGAATATATTGAT
2154385 TATTTGAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
20 10 0.37
21 17 0.63
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (21 bp):
TGAATATATTGATATATATAT
Found at i:2154573 original size:41 final size:39
Alignment explanation
Indices: 2154521--2154626 Score: 126
Period size: 37 Copynumber: 2.7 Consensus size: 39
2154511 TCAAGTCAAC
*
2154521 GAGACACTGGGTGTCAATTTAGTACTTCGGGTTAATTCGAT
1 GAGACACTGGGTGTCAATTTA-TACTTCGGGTTAA-CCGAT
* * * *
2154562 GAGGCATTGGGTGCCAA-TT-TACTTCGGTTTAACCGAT
1 GAGACACTGGGTGTCAATTTATACTTCGGGTTAACCGAT
2154599 GAGACACTGGGTGTCAATTTATTACTTC
1 GAGACACTGGGTGTCAATTTA-TACTTC
2154627 AAATTATCTG
Statistics
Matches: 54, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
37 18 0.33
38 14 0.26
40 8 0.15
41 14 0.26
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (39 bp):
GAGACACTGGGTGTCAATTTATACTTCGGGTTAACCGAT
Found at i:2159955 original size:6 final size:6
Alignment explanation
Indices: 2159944--2160009 Score: 51
Period size: 6 Copynumber: 10.0 Consensus size: 6
2159934 AATCGAAAGT
* * *
2159944 AAAGAA AAAGAA AAATGAAGA AAATGAT GAAGAA ATAAGAA AAAGAA AAAGTA
1 AAAGAA AAAGAA AAA-G-A-A AAA-GAA AAAGAA A-AAGAA AAAGAA AAAGAA
2159997 AAAGTAA AAAGAA
1 AAAG-AA AAAGAA
2160010 GAAGGAACGT
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
6 27 0.55
7 14 0.29
8 2 0.04
9 6 0.12
ACGTcount: A:0.73, C:0.00, G:0.18, T:0.09
Consensus pattern (6 bp):
AAAGAA
Found at i:2159966 original size:25 final size:24
Alignment explanation
Indices: 2159938--2160009 Score: 65
Period size: 25 Copynumber: 2.8 Consensus size: 24
2159928 GAAGTAAATC
2159938 GAAAGTAAAGAAAAAGAAAAATGAA
1 GAAAGTAAAGAAAAAGAAAAA-GAA
*
2159963 GAAAATGATGAAGAAATAAGAAAAAGAA
1 G-AAA-G-TAAAGAAA-AAGAAAAAGAA
2159991 -AAAGTAAAAGTAAAAAGAA
1 GAAAGT-AAAG-AAAAAGAA
2160010 GAAGGAACGT
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
24 1 0.03
25 10 0.26
26 9 0.23
27 1 0.03
28 10 0.26
29 8 0.21
ACGTcount: A:0.71, C:0.00, G:0.19, T:0.10
Consensus pattern (24 bp):
GAAAGTAAAGAAAAAGAAAAAGAA
Found at i:2159991 original size:13 final size:12
Alignment explanation
Indices: 2159944--2160009 Score: 51
Period size: 13 Copynumber: 5.0 Consensus size: 12
2159934 AATCGAAAGT
2159944 AAAGAAAAAGAA
1 AAAGAAAAAGAA
*
2159956 AAATGAAGAAAATGAT
1 AAA-G-A-AAAA-GAA
*
2159972 GAAGAAATAAGAA
1 AAAGAAA-AAGAA
*
2159985 AAAGAAAAAGTA
1 AAAGAAAAAGAA
2159997 AAAGTAAAAAGAA
1 AAAG-AAAAAGAA
2160010 GAAGGAACGT
Statistics
Matches: 42, Mismatches: 6, Indels: 11
0.71 0.10 0.19
Matches are distributed among these distances:
12 11 0.26
13 18 0.43
14 4 0.10
15 5 0.12
16 4 0.10
ACGTcount: A:0.73, C:0.00, G:0.18, T:0.09
Consensus pattern (12 bp):
AAAGAAAAAGAA
Found at i:2166267 original size:214 final size:214
Alignment explanation
Indices: 2165898--2166331 Score: 868
Period size: 214 Copynumber: 2.0 Consensus size: 214
2165888 TTTTGATGAA
2165898 ATTCTTATCAGTGGGCTCATCTGTCATCATCATTTGCAACGACTTCTGGTATTGAACTGATTCAA
1 ATTCTTATCAGTGGGCTCATCTGTCATCATCATTTGCAACGACTTCTGGTATTGAACTGATTCAA
2165963 GCCTCTTCTTTGAAGAGTTTAGCCTTTAAACAATTATTCTGTTTGACTAAACATGCCCATTCTTG
66 GCCTCTTCTTTGAAGAGTTTAGCCTTTAAACAATTATTCTGTTTGACTAAACATGCCCATTCTTG
2166028 GGTAAGTTATAGTGTTCGGGTGGGAGGATGTACCAAGTCATTAGAAAAAGGGAAATGGTGTAACT
131 GGTAAGTTATAGTGTTCGGGTGGGAGGATGTACCAAGTCATTAGAAAAAGGGAAATGGTGTAACT
2166093 TGCAAAACTACCAGATACC
196 TGCAAAACTACCAGATACC
2166112 ATTCTTATCAGTGGGCTCATCTGTCATCATCATTTGCAACGACTTCTGGTATTGAACTGATTCAA
1 ATTCTTATCAGTGGGCTCATCTGTCATCATCATTTGCAACGACTTCTGGTATTGAACTGATTCAA
2166177 GCCTCTTCTTTGAAGAGTTTAGCCTTTAAACAATTATTCTGTTTGACTAAACATGCCCATTCTTG
66 GCCTCTTCTTTGAAGAGTTTAGCCTTTAAACAATTATTCTGTTTGACTAAACATGCCCATTCTTG
2166242 GGTAAGTTATAGTGTTCGGGTGGGAGGATGTACCAAGTCATTAGAAAAAGGGAAATGGTGTAACT
131 GGTAAGTTATAGTGTTCGGGTGGGAGGATGTACCAAGTCATTAGAAAAAGGGAAATGGTGTAACT
2166307 TGCAAAACTACCAGATACC
196 TGCAAAACTACCAGATACC
2166326 ATTCTT
1 ATTCTT
2166332 TCCGCACGCT
Statistics
Matches: 220, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
214 220 1.00
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.33
Consensus pattern (214 bp):
ATTCTTATCAGTGGGCTCATCTGTCATCATCATTTGCAACGACTTCTGGTATTGAACTGATTCAA
GCCTCTTCTTTGAAGAGTTTAGCCTTTAAACAATTATTCTGTTTGACTAAACATGCCCATTCTTG
GGTAAGTTATAGTGTTCGGGTGGGAGGATGTACCAAGTCATTAGAAAAAGGGAAATGGTGTAACT
TGCAAAACTACCAGATACC
Found at i:2167255 original size:17 final size:17
Alignment explanation
Indices: 2167233--2167269 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
2167223 TAGACTTTGA
2167233 TCAGGAAAACGGAAATG
1 TCAGGAAAACGGAAATG
2167250 TCAGGAAAACGGAAATG
1 TCAGGAAAACGGAAATG
2167267 TCA
1 TCA
2167270 AGAATGATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.46, C:0.14, G:0.27, T:0.14
Consensus pattern (17 bp):
TCAGGAAAACGGAAATG
Found at i:2171625 original size:17 final size:18
Alignment explanation
Indices: 2171600--2171634 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
2171590 ACACGTGCCA
2171600 AATTCTTATATT-TTTAT
1 AATTCTTATATTATTTAT
*
2171617 AATTTTTATATTATTTAT
1 AATTCTTATATTATTTAT
2171635 TAAGCCTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (18 bp):
AATTCTTATATTATTTAT
Found at i:2174604 original size:18 final size:17
Alignment explanation
Indices: 2174581--2174650 Score: 52
Period size: 17 Copynumber: 4.0 Consensus size: 17
2174571 TAAAAATATT
2174581 TTTTATAATTTTTAAAAA
1 TTTTAT-ATTTTTAAAAA
2174599 TTTTAT-TTTTTAAATAAA
1 TTTTATATTTTT-AA-AAA
** **
2174617 TGGTATATTTTTATGAA
1 TTTTATATTTTTAAAAA
* *
2174634 TTTTTTAATTTTAAAAA
1 TTTTATATTTTTAAAAA
2174651 ATTAATTAAT
Statistics
Matches: 39, Mismatches: 10, Indels: 7
0.70 0.18 0.12
Matches are distributed among these distances:
16 5 0.13
17 15 0.38
18 14 0.36
19 5 0.13
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (17 bp):
TTTTATATTTTTAAAAA
Found at i:2184603 original size:103 final size:103
Alignment explanation
Indices: 2184477--2184843 Score: 481
Period size: 103 Copynumber: 3.6 Consensus size: 103
2184467 TTGCATATAA
** * *
2184477 AGGGGTTGCTGTGTGCTGATTCCCCTATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATCCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTT
2184542 TAAATGTGGAAGGGGGTTGCTAAGTGCTGATTTCCCCG
66 TAAATGTGGAAGGGGGTTGCTAAGTGCTGATTTCCCCG
* *
2184580 AGTGGTTGCTAAGTGCTGATTCCCCTA-CCTATTGGTGGTTGCTAAGTGCTGATTCCACCGTATT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATCC-ATTGGTGGTTGCTAAGTGCTGATTCCACCGTATT
* *
2184644 TTAAATGTGAAAGGGGATTGCTAAGTGCTGA-TTCTCCCG
65 TTAAATGTGGAAGGGGGTTGCTAAGTGCTGATTTC-CCCG
* * * *
2184683 AGGGGTTGCTAAGTGTTGATTCCCCGACCCATTTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
1 AGGGGTTGCTAAGTGCTGATTCCCCGATCCA-TTGGTGGTTGCTAAGTGCTGATTCCACCGTATT
* * * *
2184748 TAAAATGT-GAAGGGGGTTGCAAAGTGCTGATTCCCCCA
65 TTAAATGTGGAAGGGGGTTGCTAAGTGCTGATTTCCCCG
** * * * *
2184786 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGCGG-TGCTAAGTGCGGAATCCACC
1 AGGGGTTGCTAAGTGCTGATTCCCCGATCCATTGGTGGTTGCTAAGTGCTGATTCCACC
2184844 AACAACGGTT
Statistics
Matches: 234, Mismatches: 25, Indels: 12
0.86 0.09 0.04
Matches are distributed among these distances:
101 18 0.08
102 10 0.04
103 164 0.70
104 42 0.18
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.32
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATCCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTT
TAAATGTGGAAGGGGGTTGCTAAGTGCTGATTTCCCCG
Found at i:2184694 original size:27 final size:27
Alignment explanation
Indices: 2184655--2184709 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 27
2184645 TAAATGTGAA
2184655 AGGGGATTGCTAAGTGCTGATTCTCCCG
1 AGGGGATTGCTAAGTGCTGATTC-CCCG
*
2184683 AGGGG-TTGCTAAGTGTTGATTCCCCG
1 AGGGGATTGCTAAGTGCTGATTCCCCG
2184709 A
1 A
2184710 CCCATTTGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 5 0.19
27 16 0.62
28 5 0.19
ACGTcount: A:0.18, C:0.20, G:0.33, T:0.29
Consensus pattern (27 bp):
AGGGGATTGCTAAGTGCTGATTCCCCG
Found at i:2224232 original size:16 final size:16
Alignment explanation
Indices: 2224211--2224241 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
2224201 TCTCTCTCTC
2224211 TATATATACATATATG
1 TATATATACATATATG
*
2224227 TATATATGCATATAT
1 TATATATACATATAT
2224242 ATATGCTGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.45
Consensus pattern (16 bp):
TATATATACATATATG
Found at i:2239399 original size:24 final size:25
Alignment explanation
Indices: 2239350--2239403 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 25
2239340 ATCCTGTTTC
2239350 ATATTATTTTTTAAAAATTTTAAAT
1 ATATTATTTTTTAAAAATTTTAAAT
2239375 ATATT-TTTTTTATTAAAA-TTTAATAT
1 ATATTATTTTTTA--AAAATTTTAA-AT
2239401 ATA
1 ATA
2239404 GTGATTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
24 7 0.27
25 10 0.38
26 9 0.35
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (25 bp):
ATATTATTTTTTAAAAATTTTAAAT
Found at i:2241866 original size:18 final size:17
Alignment explanation
Indices: 2241833--2241866 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
2241823 AAGAGACGGA
*
2241833 GAAAGAAAGAAGAAAAG
1 GAAAGAAAGAAAAAAAG
2241850 GAAAGGAAAGAAAAAAA
1 GAAA-GAAAGAAAAAAA
2241867 AAGAAATGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (17 bp):
GAAAGAAAGAAAAAAAG
Found at i:2241877 original size:25 final size:26
Alignment explanation
Indices: 2241832--2241880 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
2241822 AAAGAGACGG
*
2241832 AGAAAGAAAGAAGAAAAGGAAAGGAA
1 AGAAAGAAAAAAGAAAAGGAAAGGAA
*
2241858 AGAAA-AAAAAAGAAATGGAAAGG
1 AGAAAGAAAAAAGAAAAGGAAAGG
2241881 TAGGGAGAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.69, C:0.00, G:0.29, T:0.02
Consensus pattern (26 bp):
AGAAAGAAAAAAGAAAAGGAAAGGAA
Found at i:2246212 original size:15 final size:14
Alignment explanation
Indices: 2246143--2246212 Score: 53
Period size: 12 Copynumber: 5.2 Consensus size: 14
2246133 TATTTTAATG
2246143 TATTATCAT-TTAT
1 TATTATCATATTAT
*
2246156 TATTAT--GATTAT
1 TATTATCATATTAT
2246168 TATT-TC-TATTAT
1 TATTATCATATTAT
*
2246180 TATTTAT-ATCATTTT
1 TA-TTATCAT-ATTAT
2246195 TATTCATCATATTAT
1 TATT-ATCATATTAT
2246210 TAT
1 TAT
2246213 ATGATAGTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 14
0.71 0.06 0.22
Matches are distributed among these distances:
11 1 0.02
12 15 0.33
13 8 0.18
14 4 0.09
15 15 0.33
16 2 0.04
ACGTcount: A:0.30, C:0.07, G:0.01, T:0.61
Consensus pattern (14 bp):
TATTATCATATTAT
Found at i:2246433 original size:11 final size:11
Alignment explanation
Indices: 2246417--2246453 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
2246407 CACATGCACA
2246417 TATATATATAT
1 TATATATATAT
2246428 TATATATAT-T
1 TATATATATAT
2246438 TATATA-ATAT
1 TATATATATAT
2246448 TCATAT
1 T-ATAT
2246454 GTATTTGCGC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 2 0.08
10 9 0.38
11 13 0.54
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (11 bp):
TATATATATAT
Found at i:2252568 original size:34 final size:35
Alignment explanation
Indices: 2252526--2252610 Score: 102
Period size: 34 Copynumber: 2.5 Consensus size: 35
2252516 GATCCAATTC
*
2252526 AAAA-AAAAAAGAAAATCAAAGTCAAAAAGAAGA-
1 AAAAGAAAAAAGAAAATCAAAGTCAAAAAGAAAAG
** *
2252559 AAAAGAAAAATCAAAATCAAAGTCAAAATGAAAATG
1 AAAAGAAAAAAGAAAATCAAAGTCAAAAAGAAAA-G
*
2252595 AAAAGAGAAAAGAAAA
1 AAAAGAAAAAAGAAAA
2252611 AGAAAAAGGA
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
33 4 0.10
34 25 0.60
36 13 0.31
ACGTcount: A:0.73, C:0.06, G:0.13, T:0.08
Consensus pattern (35 bp):
AAAAGAAAAAAGAAAATCAAAGTCAAAAAGAAAAG
Found at i:2252631 original size:6 final size:6
Alignment explanation
Indices: 2252583--2252632 Score: 55
Period size: 6 Copynumber: 8.2 Consensus size: 6
2252573 AATCAAAGTC
* * * *
2252583 AAAATG AAAATG AAAAGAG AAAAGA AAAAGA AAAAGG AAAAGG AAAAGG
1 AAAAGG AAAAGG AAAAG-G AAAAGG AAAAGG AAAAGG AAAAGG AAAAGG
2252632 A
1 A
2252633 GAGGTCAAGG
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
6 34 0.85
7 6 0.15
ACGTcount: A:0.72, C:0.00, G:0.24, T:0.04
Consensus pattern (6 bp):
AAAAGG
Found at i:2254539 original size:43 final size:43
Alignment explanation
Indices: 2254490--2254626 Score: 104
Period size: 43 Copynumber: 3.2 Consensus size: 43
2254480 GATAGCAAAT
2254490 CTTGCCTTCCTGCGTTAACAGCGAAGTAAATCGAAAACAAAGC
1 CTTGCCTTCCTGCGTTAACAGCGAAGTAAATCGAAAACAAAGC
** * * ** * *
2254533 CTTGCC-TCCAT-CGGTT-GTAGTGGAGCT-GGTTGAAGATAGCAAA-T
1 CTTGCCTTCC-TGC-GTTAACAGCGAAG-TAAATCGAA-A-A-CAAAGC
*
2254577 CTTGCCTTCCTGCGTTAACAGCGAAGCAAATCGAAAACAAAGC
1 CTTGCCTTCCTGCGTTAACAGCGAAGTAAATCGAAAACAAAGC
2254620 CTTGCCT
1 CTTGCCT
2254627 CCATCGGTTG
Statistics
Matches: 66, Mismatches: 17, Indels: 22
0.63 0.16 0.21
Matches are distributed among these distances:
42 17 0.26
43 20 0.30
44 12 0.18
45 17 0.26
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (43 bp):
CTTGCCTTCCTGCGTTAACAGCGAAGTAAATCGAAAACAAAGC
Found at i:2254548 original size:87 final size:87
Alignment explanation
Indices: 2254264--2254893 Score: 931
Period size: 87 Copynumber: 7.3 Consensus size: 87
2254254 GTGAAGATAA
* *
2254264 AAAACAAAGCCTTGCCTCTATCGGTTGTAGTGGAGCTGGTTAAAGA-AGCAGATCATGCCTTCCT
1 AAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCT
** *
2254328 GTATTGACAGCGAAGCAGATCG
66 GCGTTAACAGCGAAGCAGATCG
* * * *
2254350 AAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAATATA-CAGATTTTGTCTTCCT
1 AAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCT
*
2254414 GCATTAACAGCGAAGCAGATCG
66 GCGTTAACAGCGAAGCAGATCG
* *
2254436 AAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTGAAGATAGCAAATCTTGCCTTCCT
1 AAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCT
* *
2254501 GCGTTAACAGCGAAGTAAATCG
66 GCGTTAACAGCGAAGCAGATCG
* *
2254523 AAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTGAAGATAGCAAATCTTGCCTTCCT
1 AAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCT
*
2254588 GCGTTAACAGCGAAGCAAATCG
66 GCGTTAACAGCGAAGCAGATCG
* * * *
2254610 AAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTAGTTTAAGATAGCAGATCTTGCCTTCTT
1 AAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCT
* *
2254675 GTGTTAATAGCGAAGCAGATCG
66 GCGTTAACAGCGAAGCAGATCG
* * * * *
2254697 AAAACAAAGCCTTGCCTCCATCGATTATAGTGGAGCTGGTTGAAGATAGAAAATCTTGCCTTCCT
1 AAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCT
*
2254762 GCGTTAACAGCGAAGCAAATCG
66 GCGTTAACAGCGAAGCAGATCG
* *
2254784 AAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATTGCAGATCTTGCCTTCCT
1 AAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCT
* * **
2254849 GCGTTAACAGTGAAGCTGATAA
66 GCGTTAACAGCGAAGCAGATCG
2254871 AAAACAAAGCCTTGCCTCCATCG
1 AAAACAAAGCCTTGCCTCCATCG
2254894 ACTACAGTGG
Statistics
Matches: 493, Mismatches: 49, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
86 121 0.25
87 372 0.75
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.25
Consensus pattern (87 bp):
AAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCT
GCGTTAACAGCGAAGCAGATCG
Found at i:2256635 original size:15 final size:14
Alignment explanation
Indices: 2256566--2256635 Score: 53
Period size: 12 Copynumber: 5.2 Consensus size: 14
2256556 TATTTTAATG
2256566 TATTATCAT-TTAT
1 TATTATCATATTAT
*
2256579 TATTAT--GATTAT
1 TATTATCATATTAT
2256591 TATT-TC-TATTAT
1 TATTATCATATTAT
*
2256603 TATTTAT-ATCATTTT
1 TA-TTATCAT-ATTAT
2256618 TATTCATCATATTAT
1 TATT-ATCATATTAT
2256633 TAT
1 TAT
2256636 ATGATAGTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 14
0.71 0.06 0.22
Matches are distributed among these distances:
11 1 0.02
12 15 0.33
13 8 0.18
14 4 0.09
15 15 0.33
16 2 0.04
ACGTcount: A:0.30, C:0.07, G:0.01, T:0.61
Consensus pattern (14 bp):
TATTATCATATTAT
Found at i:2256863 original size:21 final size:21
Alignment explanation
Indices: 2256842--2256884 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
2256832 CATGCACATT
2256842 TTTATAT-ATATT-ATATATA
1 TTTATATAATATTCATATATA
*
2256861 TTTATATAATATTCATATGTA
1 TTTATATAATATTCATATATA
2256882 TTT
1 TTT
2256885 GCGCATTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.33
20 5 0.24
21 9 0.43
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.58
Consensus pattern (21 bp):
TTTATATAATATTCATATATA
Found at i:2259621 original size:22 final size:22
Alignment explanation
Indices: 2259580--2259621 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
2259570 CATATTTTAT
** *
2259580 ATTTTTTTTTACTTAGAGTTCA
1 ATTTTTTTTTACAAAAAGTTCA
2259602 ATTTTTTTTTACAAAAAGTT
1 ATTTTTTTTTACAAAAAGTT
2259622 AACATTTGTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.57
Consensus pattern (22 bp):
ATTTTTTTTTACAAAAAGTTCA
Found at i:2260147 original size:12 final size:12
Alignment explanation
Indices: 2260130--2260161 Score: 55
Period size: 12 Copynumber: 2.6 Consensus size: 12
2260120 CACTTATAAT
2260130 ATAAAATTAAAA
1 ATAAAATTAAAA
2260142 ATAAAATTAAAA
1 ATAAAATTAAAA
2260154 ATTAAAAT
1 A-TAAAAT
2260162 ATAACTTCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 13 0.68
13 6 0.32
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (12 bp):
ATAAAATTAAAA
Found at i:2261107 original size:18 final size:18
Alignment explanation
Indices: 2261084--2261119 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
2261074 GTTAAAAAAA
*
2261084 TATTTTATTAATTATTTT
1 TATTTTATTAATGATTTT
2261102 TATTTTATTAATGATTTT
1 TATTTTATTAATGATTTT
2261120 ATTAATGTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (18 bp):
TATTTTATTAATGATTTT
Found at i:2263457 original size:41 final size:42
Alignment explanation
Indices: 2263412--2263528 Score: 141
Period size: 41 Copynumber: 2.8 Consensus size: 42
2263402 ATCTGAGATT
* *
2263412 TTCAGGCCTAATGCCTAGCAGGCTTGATGCCGGTG-AAT-TAA
1 TTCAGGCTTAATGCCTAGCAGGCTTTATGCCGGTGAAATGT-A
* * *
2263453 TTCAGACTTGATGTCTAGCAGGCTTTATGCCGGTGAAATGTA
1 TTCAGGCTTAATGCCTAGCAGGCTTTATGCCGGTGAAATGTA
**
2263495 -TCAGGCTTTGTGCCTAGCAGGCTTTATGCCGGTG
1 TTCAGGCTTAATGCCTAGCAGGCTTTATGCCGGTG
2263529 TTTTATGCAA
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
41 60 0.92
42 4 0.06
43 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.31
Consensus pattern (42 bp):
TTCAGGCTTAATGCCTAGCAGGCTTTATGCCGGTGAAATGTA
Found at i:2264301 original size:15 final size:14
Alignment explanation
Indices: 2264283--2264315 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
2264273 ATGGTGAATG
2264283 ATATGATATATAAA
1 ATATGATATATAAA
2264297 TATAT-ATATATAAA
1 -ATATGATATATAAA
2264311 ATATG
1 ATATG
2264316 CGTGGAATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 4 0.24
14 9 0.53
15 4 0.24
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (14 bp):
ATATGATATATAAA
Found at i:2266281 original size:21 final size:20
Alignment explanation
Indices: 2266256--2266295 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
2266246 TTAGAGATTA
*
2266256 ATAAAACACTATTAAAATAAT
1 ATAAAACAATA-TAAAATAAT
*
2266277 ATAAAATAATATAAAATAA
1 ATAAAACAATATAAAATAA
2266296 AAATTTTGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.28
Consensus pattern (20 bp):
ATAAAACAATATAAAATAAT
Found at i:2266283 original size:10 final size:10
Alignment explanation
Indices: 2266268--2266295 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
2266258 AAAACACTAT
2266268 TAAAATAATA
1 TAAAATAATA
2266278 TAAAATAATA
1 TAAAATAATA
2266288 TAAAATAA
1 TAAAATAA
2266296 AAATTTTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (10 bp):
TAAAATAATA
Found at i:2267465 original size:15 final size:16
Alignment explanation
Indices: 2267445--2267481 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
2267435 TGTAGCACGT
2267445 TTTTCTC-TT-CTTCTG
1 TTTTCTCTTTCCTT-TG
2267460 TTTTCTCTTTCCTTTG
1 TTTTCTCTTTCCTTTG
2267476 TTTTCT
1 TTTTCT
2267482 TTACCCTCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 7 0.35
16 10 0.50
17 3 0.15
ACGTcount: A:0.00, C:0.24, G:0.05, T:0.70
Consensus pattern (16 bp):
TTTTCTCTTTCCTTTG
Found at i:2267493 original size:16 final size:16
Alignment explanation
Indices: 2267445--2267494 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
2267435 TGTAGCACGT
*
2267445 TTTTCTCTT-CTTCTG
1 TTTTCTCTTCCCTCTG
* *
2267460 TTTTCTCTTTCCTTTG
1 TTTTCTCTTCCCTCTG
2267476 TTTTCT-TTACCCTCTG
1 TTTTCTCTT-CCCTCTG
2267492 TTT
1 TTT
2267495 CGTGACTTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 11 0.38
16 18 0.62
ACGTcount: A:0.02, C:0.26, G:0.06, T:0.66
Consensus pattern (16 bp):
TTTTCTCTTCCCTCTG
Found at i:2272524 original size:78 final size:78
Alignment explanation
Indices: 2272390--2272548 Score: 282
Period size: 78 Copynumber: 2.0 Consensus size: 78
2272380 TTAGGTGTTC
* *
2272390 AATAATCTTGTGAATGTTGATGTTTTCTGCCTTGTATGTATTGTGATTTCTTCTTCTTGTAGGTC
1 AATAATCTTGTGAATGTTGATGTTTTCTACCTTGTATGTATTGTGATTTCTTCTTCTTGTAGGCC
*
2272455 AATGGTTGCATGA
66 AACGGTTGCATGA
*
2272468 AATACTCTTGTGAATGTTGATGTTTTCTACCTTGTATGTATTGTGATTTCTTCTTCTTGTAGGCC
1 AATAATCTTGTGAATGTTGATGTTTTCTACCTTGTATGTATTGTGATTTCTTCTTCTTGTAGGCC
2272533 AACGGTTGCATGA
66 AACGGTTGCATGA
2272546 AAT
1 AAT
2272549 GAAACTGAAT
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 77 1.00
ACGTcount: A:0.20, C:0.13, G:0.21, T:0.46
Consensus pattern (78 bp):
AATAATCTTGTGAATGTTGATGTTTTCTACCTTGTATGTATTGTGATTTCTTCTTCTTGTAGGCC
AACGGTTGCATGA
Found at i:2273846 original size:2 final size:2
Alignment explanation
Indices: 2273839--2273868 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
2273829 ATCAGTCTTT
2273839 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
2273869 TGTATTAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:2278251 original size:27 final size:28
Alignment explanation
Indices: 2278196--2278249 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
2278186 TAGAGATTGT
*
2278196 ATAAAAATTTTAAATAAATTATAAAAAG
1 ATAAAAATATTAAATAAATTATAAAAAG
*
2278224 ATAAAATATATTAAA-AATTTATAAAA
1 ATAAAA-ATATTAAATAAATTATAAAA
2278250 GAAAGCAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 16 0.70
29 7 0.30
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (28 bp):
ATAAAAATATTAAATAAATTATAAAAAG
Found at i:2279191 original size:5 final size:5
Alignment explanation
Indices: 2279181--2279206 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
2279171 CTAAAACAAG
2279181 GGAAA GGAAA GGAAA GGAAA GGAAA G
1 GGAAA GGAAA GGAAA GGAAA GGAAA G
2279207 TGACATCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (5 bp):
GGAAA
Found at i:2292045 original size:21 final size:21
Alignment explanation
Indices: 2292021--2292077 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
2292011 GTGTCTCTTA
*
2292021 GTCACATGGCCGTGTCCCTCC
1 GTCACATGACCGTGTCCCTCC
*
2292042 GTCACATGATCGTGTCCCTCC
1 GTCACATGACCGTGTCCCTCC
*
2292063 GTCACACGACCGTGT
1 GTCACATGACCGTGT
2292078 AGCCTGCCAC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.14, C:0.39, G:0.23, T:0.25
Consensus pattern (21 bp):
GTCACATGACCGTGTCCCTCC
Found at i:2294814 original size:71 final size:71
Alignment explanation
Indices: 2294631--2294798 Score: 214
Period size: 71 Copynumber: 2.4 Consensus size: 71
2294621 TGTTGCATAT
* * * * * *
2294631 CCAACTTCAAACCAA-AGGGGGAACATATAGCCACCAATGTCACGACAACCACCATCCCATGTCG
1 CCAACTTCAAACCAAGAGAGGGAGCATACAACCAGCAATGTCGCGACAACCACCATCCCATGTCG
2294695 CAACAC
66 CAACAC
* *
2294701 CCAACTTCAAACCTAGAGGGGGAGCATACAACCAGCAATGTCGCGACAACCACCA-CTCCATGTC
1 CCAACTTCAAACCAAGAGAGGGAGCATACAACCAGCAATGTCGCGACAACCACCATC-CCATGTC
* * *
2294765 GCGATAT
65 GCAACAC
2294772 CCAACTTCAAACCAAGAGAGGGAGCAT
1 CCAACTTCAAACCAAGAGAGGGAGCAT
2294799 TCAATGTTCA
Statistics
Matches: 85, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
70 15 0.18
71 70 0.82
ACGTcount: A:0.36, C:0.33, G:0.18, T:0.14
Consensus pattern (71 bp):
CCAACTTCAAACCAAGAGAGGGAGCATACAACCAGCAATGTCGCGACAACCACCATCCCATGTCG
CAACAC
Found at i:2321300 original size:29 final size:29
Alignment explanation
Indices: 2321268--2321325 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
2321258 TTGTGTCAAT
*
2321268 GTGCAATTCCATACATG-AATTTTGATTTG
1 GTGCAATTACATACATGAAATTTT-ATTTG
*
2321297 GTGCAATTATATACATGAAATTTTATTTG
1 GTGCAATTACATACATGAAATTTTATTTG
2321326 CGATTCAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 20 0.77
30 6 0.23
ACGTcount: A:0.31, C:0.10, G:0.16, T:0.43
Consensus pattern (29 bp):
GTGCAATTACATACATGAAATTTTATTTG
Found at i:2322723 original size:23 final size:24
Alignment explanation
Indices: 2322679--2322723 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
2322669 TAATAAATTA
*
2322679 TATATTCTAAAATATATTTTAACT
1 TATATTCTAAAATATATCTTAACT
2322703 TATATT-T-AAATATTATCTTAA
1 TATATTCTAAAATA-TATCTTAA
2322724 AACTATTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 5 0.26
23 8 0.42
24 6 0.32
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.51
Consensus pattern (24 bp):
TATATTCTAAAATATATCTTAACT
Found at i:2322996 original size:3 final size:3
Alignment explanation
Indices: 2322988--2323020 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
2322978 AAATTGAGGT
2322988 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
2323021 GAAGGACCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:2323396 original size:23 final size:22
Alignment explanation
Indices: 2323369--2323418 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 22
2323359 CAACTTAAAT
2323369 TTTAAA-TTTTAAAAAGTAAAAA
1 TTTAAATTTTTAAAAA-TAAAAA
2323391 TATTAAATTTTTAAAAATAAAAA
1 T-TTAAATTTTTAAAAATAAAAA
2323414 TTTAA
1 TTTAA
2323419 GGACTAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
22 5 0.19
23 12 0.46
24 9 0.35
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (22 bp):
TTTAAATTTTTAAAAATAAAAA
Found at i:2327615 original size:16 final size:17
Alignment explanation
Indices: 2327594--2327626 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
2327584 ATACCTTGCA
2327594 TAACAAA-ATAAATATT
1 TAACAAATATAAATATT
*
2327610 TAACAAATATAATTATT
1 TAACAAATATAAATATT
2327627 CAATTTATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (17 bp):
TAACAAATATAAATATT
Found at i:2331109 original size:14 final size:14
Alignment explanation
Indices: 2331090--2331128 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
2331080 TTTGAGATGA
*
2331090 TATATATATGTATG
1 TATATATATATATG
*
2331104 TATATATGTATATG
1 TATATATATATATG
*
2331118 TATATGTATAT
1 TATATATATAT
2331129 GATGCTGATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.36, C:0.00, G:0.13, T:0.51
Consensus pattern (14 bp):
TATATATATATATG
Found at i:2331115 original size:6 final size:6
Alignment explanation
Indices: 2331089--2331129 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
2331079 ATTTGAGATG
* * *
2331089 ATATAT ATATGT ATGTAT ATATGT ATATGT ATATGT ATATG
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATG
2331130 ATGCTGATCT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.49
Consensus pattern (6 bp):
ATATGT
Found at i:2331129 original size:12 final size:12
Alignment explanation
Indices: 2331089--2331128 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
2331079 ATTTGAGATG
2331089 ATATATATATGT
1 ATATATATATGT
*
2331101 ATGTATATATGT
1 ATATATATATGT
*
2331113 ATATGTATATGT
1 ATATATATATGT
2331125 ATAT
1 ATAT
2331129 GATGCTGATC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (12 bp):
ATATATATATGT
Found at i:2332138 original size:60 final size:60
Alignment explanation
Indices: 2332045--2332161 Score: 225
Period size: 60 Copynumber: 1.9 Consensus size: 60
2332035 TCATATATAT
*
2332045 TTCCTTATTTATTTATGGCATAATGACTTATTTGGTCTTCCAACTTTATAAGAAAAATCA
1 TTCCTTATTTATTTATGGCATAATGACTTATTTGGCCTTCCAACTTTATAAGAAAAATCA
2332105 TTCCTTATTTATTTATGGCATAATGACTTATTTGGCCTTCCAACTTTATAAGAAAAA
1 TTCCTTATTTATTTATGGCATAATGACTTATTTGGCCTTCCAACTTTATAAGAAAAA
2332162 AATCATTTTA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.32, C:0.15, G:0.10, T:0.43
Consensus pattern (60 bp):
TTCCTTATTTATTTATGGCATAATGACTTATTTGGCCTTCCAACTTTATAAGAAAAATCA
Found at i:2335023 original size:27 final size:25
Alignment explanation
Indices: 2334993--2335058 Score: 62
Period size: 26 Copynumber: 2.5 Consensus size: 25
2334983 ATATAGGATG
2334993 ATTTTAAAATAATTATTATATAAAACA
1 ATTTTAAAATAATTA-TATA-AAAACA
* * *
2335020 ATTTGGAATAA-AACTATATAAAAATA
1 ATTT-TAA-AATAATTATATAAAAACA
2335046 ATTTTAAAATAAT
1 ATTTTAAAATAAT
2335059 ATGTAGTGAC
Statistics
Matches: 31, Mismatches: 5, Indels: 8
0.70 0.11 0.18
Matches are distributed among these distances:
24 2 0.06
25 4 0.13
26 9 0.29
27 8 0.26
28 6 0.19
29 2 0.06
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (25 bp):
ATTTTAAAATAATTATATAAAAACA
Found at i:2342559 original size:19 final size:18
Alignment explanation
Indices: 2342526--2342561 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
2342516 ATATTTAATA
*
2342526 TTTTTTTATACTTTTTAT
1 TTTTTTTATAATTTTTAT
2342544 TTTTTTTACTAATTTTTA
1 TTTTTTTA-TAATTTTTA
2342562 AAATTCTTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (18 bp):
TTTTTTTATAATTTTTAT
Found at i:2353168 original size:2 final size:2
Alignment explanation
Indices: 2353161--2353186 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
2353151 TTTGACTCTT
2353161 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
2353187 ATAGATTGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2358003 original size:20 final size:20
Alignment explanation
Indices: 2357959--2358002 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
2357949 CTCTTTCAAC
2357959 AAAAATTACAAAATAATTTT
1 AAAAATTACAAAATAATTTT
*
2357979 GAAAATT-CAAAAT-ATTTAT
1 AAAAATTACAAAATAATTT-T
2357998 AAAAA
1 AAAAA
2358003 AAAATCTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 4 0.19
19 11 0.52
20 6 0.29
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (20 bp):
AAAAATTACAAAATAATTTT
Found at i:2358707 original size:20 final size:22
Alignment explanation
Indices: 2358670--2358709 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
2358660 TAGGGTTAAT
2358670 TATTTATAAATATAAATCAATA
1 TATTTATAAATATAAATCAATA
2358692 TATTT-TAAAT-TAAATCAA
1 TATTTATAAATATAAATCAA
2358710 ACTTTAAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.44
21 5 0.28
22 5 0.28
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (22 bp):
TATTTATAAATATAAATCAATA
Found at i:2364496 original size:29 final size:28
Alignment explanation
Indices: 2364463--2364532 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 28
2364453 ATTTCAATAC
2364463 TTTTTA-ATTTAAATATTTTTCTATATATT
1 TTTTTATATTTAAATA-TTTTCTA-ATATT
**
2364492 TTTTTCATATTTTTATATTTTCTAATATT
1 TTTTT-ATATTTAAATATTTTCTAATATT
2364521 TTCTTTATATTT
1 TT-TTTATATTT
2364533 TTATAATAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
29 18 0.50
30 11 0.31
31 7 0.19
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.69
Consensus pattern (28 bp):
TTTTTATATTTAAATATTTTCTAATATT
Found at i:2364533 original size:29 final size:30
Alignment explanation
Indices: 2364479--2364537 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 30
2364469 ATTTAAATAT
2364479 TTTTCTATATATTTTTTTCATATTTTTATA
1 TTTTCTATATATTTTTTTCATATTTTTATA
2364509 TTTTCTA-ATATTTTCTTT-ATATTTTTATA
1 TTTTCTATATATTTT-TTTCATATTTTTATA
2364538 ATAATTGGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 18 0.64
30 10 0.36
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.69
Consensus pattern (30 bp):
TTTTCTATATATTTTTTTCATATTTTTATA
Found at i:2364848 original size:17 final size:18
Alignment explanation
Indices: 2364826--2364872 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
2364816 TCAAATAATT
2364826 ATAAATTAAAATT-ATAA
1 ATAAATTAAAATTAATAA
2364843 ATAAATTTAAAATTAATAA
1 ATAAA-TTAAAATTAATAA
*
2364862 A-AAATAAAAAT
1 ATAAATTAAAAT
2364873 ATTCATTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
17 11 0.41
18 11 0.41
19 5 0.19
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
ATAAATTAAAATTAATAA
Found at i:2364854 original size:18 final size:19
Alignment explanation
Indices: 2364826--2364866 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
2364816 TCAAATAATT
2364826 ATAAA-TTAAAATT-ATAA
1 ATAAATTTAAAATTAATAA
2364843 ATAAATTTAAAATTAATAA
1 ATAAATTTAAAATTAATAA
2364862 A-AAAT
1 ATAAAT
2364867 AAAAATATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.23
18 12 0.55
19 5 0.23
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
ATAAATTTAAAATTAATAA
Found at i:2368845 original size:33 final size:33
Alignment explanation
Indices: 2368803--2368872 Score: 140
Period size: 33 Copynumber: 2.1 Consensus size: 33
2368793 GGTTACAAAT
2368803 TTGGGGGAAATGCTTATGACTCTTGATTTAGAA
1 TTGGGGGAAATGCTTATGACTCTTGATTTAGAA
2368836 TTGGGGGAAATGCTTATGACTCTTGATTTAGAA
1 TTGGGGGAAATGCTTATGACTCTTGATTTAGAA
2368869 TTGG
1 TTGG
2368873 ACTCTTAAGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.26, C:0.09, G:0.29, T:0.37
Consensus pattern (33 bp):
TTGGGGGAAATGCTTATGACTCTTGATTTAGAA
Found at i:2369522 original size:43 final size:42
Alignment explanation
Indices: 2369466--2369546 Score: 108
Period size: 43 Copynumber: 1.9 Consensus size: 42
2369456 AAATAACTAT
* *
2369466 CCAAACAAATTAAACATAATAATTTCGCAACAATTTAAATAAA
1 CCAAACAAATTAAACATAAGAATTTCG-AACAAATTAAATAAA
* * *
2369509 CCAAATAATTTAAAGATAAGAATTTCGAACAAATTAAA
1 CCAAACAAATTAAACATAAGAATTTCGAACAAATTAAA
2369547 AGTTCCATAA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
42 10 0.30
43 23 0.70
ACGTcount: A:0.56, C:0.14, G:0.05, T:0.26
Consensus pattern (42 bp):
CCAAACAAATTAAACATAAGAATTTCGAACAAATTAAATAAA
Found at i:2369795 original size:25 final size:23
Alignment explanation
Indices: 2369728--2369795 Score: 66
Period size: 25 Copynumber: 2.8 Consensus size: 23
2369718 GTTAAATAAT
*
2369728 AATCCAAACAAATTAAACATAGC
1 AATCCAAACAAATTAAACAAAGC
*
2369751 AATCGCACAACAACTTAAACAAAAG-
1 AATC-CA-AACAAATTAAAC-AAAGC
2369776 AATTCCAAACAAATTCAAAC
1 AA-TCCAAACAAATT-AAAC
2369796 TTCCGTAACA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
23 4 0.11
24 9 0.24
25 19 0.51
26 5 0.14
ACGTcount: A:0.56, C:0.24, G:0.04, T:0.16
Consensus pattern (23 bp):
AATCCAAACAAATTAAACAAAGC
Found at i:2372736 original size:4 final size:4
Alignment explanation
Indices: 2372727--2372785 Score: 118
Period size: 4 Copynumber: 14.8 Consensus size: 4
2372717 TACAATTCGA
2372727 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
2372775 ATAC ATAC ATA
1 ATAC ATAC ATA
2372786 TATCACCCAT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 55 1.00
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:2373374 original size:21 final size:21
Alignment explanation
Indices: 2373329--2373384 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
2373319 ATATGTCAAT
*
2373329 AGAAGCTC-GAA-AGCTAAAC
1 AGAAGCTCGGAAGAGCGAAAC
*
2373348 AAAAGCTCGGAAGAGCGAAAC
1 AGAAGCTCGGAAGAGCGAAAC
*
2373369 AGAAGCTCGTAAGAGC
1 AGAAGCTCGGAAGAGC
2373385 TAATCCACCT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 7 0.23
20 3 0.10
21 21 0.68
ACGTcount: A:0.45, C:0.20, G:0.27, T:0.09
Consensus pattern (21 bp):
AGAAGCTCGGAAGAGCGAAAC
Found at i:2376598 original size:45 final size:44
Alignment explanation
Indices: 2376549--2376837 Score: 373
Period size: 45 Copynumber: 6.4 Consensus size: 44
2376539 TTGTCATAGT
** * * * *
2376549 GTCTTTCAACCATGGTCTTATTAATTTGATTCGTGATGCCATAGC
1 GTCTTTCAGTCATGGTCTTATTGA-TAGAATCGTGATGCCATAAC
*
2376594 GTCTTTCAG-CTATGGTCTTACTTGATAGAATTGTGATGCCATAAC
1 GTCTTTCAGTC-ATGGTCTTA-TTGATAGAATCGTGATGCCATAAC
* *
2376639 GTCTTTCAGTCATGGTCTTCCTCGATAGAATCGTGATGCCATAAC
1 GTCTTTCAGTCATGGTCTT-ATTGATAGAATCGTGATGCCATAAC
*
2376684 GTCTTTCAGTCATGGTCTTACTCGATAGAATCGTGATGCCATAAC
1 GTCTTTCAGTCATGGTCTTA-TTGATAGAATCGTGATGCCATAAC
*
2376729 GTCTTTCAGTCATGGTCTTACTCGATAGAATCGTGATGCCATAAC
1 GTCTTTCAGTCATGGTCTTA-TTGATAGAATCGTGATGCCATAAC
* *
2376774 GTCTTTCAGTCATGGTCTTACTCATTAGAATCGTGATGCCATAAC
1 GTCTTTCAGTCATGGTCTTATTGA-TAGAATCGTGATGCCATAAC
**
2376819 ACCTTTCAGTCATGGTCTT
1 GTCTTTCAGTCATGGTCTT
2376838 GTTTCTAGTA
Statistics
Matches: 223, Mismatches: 15, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
44 2 0.01
45 217 0.97
46 4 0.02
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.36
Consensus pattern (44 bp):
GTCTTTCAGTCATGGTCTTATTGATAGAATCGTGATGCCATAAC
Done.