Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 77 of 196
Found at i:22179973 original size:10 final size:10
Alignment explanation
Indices: 22179951--22179980 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
22179941 ACTCAATACA
22179951 AATAATA-AT
1 AATAATATAT
22179960 AATAATATAT
1 AATAATATAT
22179970 AATAATATAT
1 AATAATATAT
22179980 A
1 A
22179981 TGTAAAAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 7 0.35
10 13 0.65
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
AATAATATAT
Found at i:22180294 original size:21 final size:24
Alignment explanation
Indices: 22180270--22180323 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 24
22180260 AATATATATA
22180270 TAAAATAATAGAT-TAT-G-AAA-T
1 TAAAATAATA-ATATATGGAAAACT
22180291 T-AAATAATAATATATGGAAAACT
1 TAAAATAATAATATATGGAAAACT
22180314 TAAAATAATA
1 TAAAATAATA
22180324 TTAAATAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
19 2 0.07
20 11 0.39
21 2 0.07
22 3 0.11
23 2 0.07
24 8 0.29
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.31
Consensus pattern (24 bp):
TAAAATAATAATATATGGAAAACT
Found at i:22180306 original size:20 final size:20
Alignment explanation
Indices: 22180250--22180306 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
22180240 ATTATACTAG
*
22180250 ATTAACATAA-AATATAT-AT
1 ATTAA-ATAATAATATATGAA
*
22180269 ATAAAATAATAGAT-TATGAA
1 ATTAAATAATA-ATATATGAA
22180289 ATTAAATAATAATATATG
1 ATTAAATAATAATATATG
22180307 GAAAACTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
18 4 0.13
19 10 0.32
20 17 0.55
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (20 bp):
ATTAAATAATAATATATGAA
Found at i:22181514 original size:12 final size:12
Alignment explanation
Indices: 22181499--22181546 Score: 55
Period size: 12 Copynumber: 4.2 Consensus size: 12
22181489 TTATATAATA
22181499 TTTTTTATTTGG
1 TTTTTTATTTGG
*
22181511 TTTTTTAATT--
1 TTTTTTATTTGG
*
22181521 TTTTTGATTTGG
1 TTTTTTATTTGG
*
22181533 TTTATTATTTGG
1 TTTTTTATTTGG
22181545 TT
1 TT
22181547 GTGGGCCCGG
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
10 8 0.28
12 21 0.72
ACGTcount: A:0.12, C:0.00, G:0.15, T:0.73
Consensus pattern (12 bp):
TTTTTTATTTGG
Found at i:22181519 original size:22 final size:22
Alignment explanation
Indices: 22181494--22181535 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
22181484 GACTTTTATA
22181494 TAATATTTTTT-ATTTGGTTTTT
1 TAAT-TTTTTTGATTTGGTTTTT
22181516 TAATTTTTTTGATTTGGTTT
1 TAATTTTTTTGATTTGGTTT
22181536 ATTATTTGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.17, C:0.00, G:0.12, T:0.71
Consensus pattern (22 bp):
TAATTTTTTTGATTTGGTTTTT
Found at i:22184599 original size:2 final size:2
Alignment explanation
Indices: 22184592--22184620 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
22184582 CAATGATGGA
22184592 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
22184621 TCATAGTGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:22188467 original size:5 final size:6
Alignment explanation
Indices: 22188452--22188476 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
22188442 ACAGTTTATT
22188452 AAAAAG AAAAAG AAAAAG AAAAAG A
1 AAAAAG AAAAAG AAAAAG AAAAAG A
22188477 TGGTTTGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:22192038 original size:51 final size:50
Alignment explanation
Indices: 22191958--22192250 Score: 276
Period size: 51 Copynumber: 5.8 Consensus size: 50
22191948 TGTCGATGAA
* *
22191958 CACGTGTGTAGTACTAAGTGAAGGCTACTATGTGTATCGAAAAGCTTTGAG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAAAA-CTTTGAG
* * * * *
22192009 CACATGTGTAGTACTGTGTGAATGCTACTACGTGTATCGGTAAACTATG-G
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATC-GAAAACTTTGAG
* * * * * * *
22192059 TTACATGTGTAGTACTAAGTGAAGGCTACAATGGGTACCGAAAAGCTTTG-G
1 -CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAAAA-CTTTGAG
* * *
22192110 TCACGTATGTAGTACTATGTGAAGGCTACTACGTG-AGCCGTAAAAC-TTGAT
1 -CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTA-TCG-AAAACTTTGAG
* * *
22192161 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG-AACTGTAAAAC--TAAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATC-G-AAAACTTTGAG
22192210 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAA
22192251 TGATAAAAAT
Statistics
Matches: 205, Mismatches: 29, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
48 2 0.01
49 39 0.19
50 52 0.25
51 104 0.51
52 8 0.04
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (50 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAAAACTTTGAG
Found at i:22192138 original size:102 final size:102
Alignment explanation
Indices: 22191962--22192248 Score: 343
Period size: 102 Copynumber: 2.8 Consensus size: 102
22191952 GATGAACACG
* * *
22191962 TGTGTAGTACTAAGTGAAGGCTACTATGTGTATCGAAAAGCTTTGAG-CACATGTGTAGTACTGT
1 TGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTG-GTCACGTGTGTAGTACTAT
* * *
22192026 GTGAATGCTACTACGTGTATCGGT-AAACTATGGTTACA
65 GTGAAGGCTACTACGTGTATCGGTAAAACT-TGATCACA
* * *
22192064 TGTGTAGTACTAAGTGAAGGCTACAATGGGTACCGAAAAGCTTTGGTCACGTATGTAGTACTATG
1 TGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGGTCACGTGTGTAGTACTATG
* * *
22192129 TGAAGGCTACTACGTG-AGCCGTAAAACTTGATCACG
66 TGAAGGCTACTACGTGTATCGGTAAAACTTGATCACA
* * * * **
22192165 TGTGTAGTACTATGTGAAGGCTACTACGTGAACTGTAAAA-C--TAATCACGTGTGTAGTACTAT
1 TGTGTAGTACTAAGTGAAGGCTACTATGTGTACCG-AAAAGCTTTGGTCACGTGTGTAGTACTAT
22192227 GTGAAGGCTACTACGTGTATCG
65 GTGAAGGCTACTACGTGTATCG
22192249 AATGATAAAA
Statistics
Matches: 158, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
99 35 0.22
100 2 0.01
101 40 0.25
102 81 0.51
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (102 bp):
TGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGGTCACGTGTGTAGTACTATG
TGAAGGCTACTACGTGTATCGGTAAAACTTGATCACA
Found at i:22196168 original size:30 final size:30
Alignment explanation
Indices: 22196134--22196193 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
22196124 GATTTGAAAA
*
22196134 AGGTGATCTAATAACTAAGAATTAACTAAG
1 AGGTGATCCAATAACTAAGAATTAACTAAG
*
22196164 AGGTGATCCGATAACTAAGAATTAACTAAG
1 AGGTGATCCAATAACTAAGAATTAACTAAG
22196194 TAATCAACTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.45, C:0.12, G:0.18, T:0.25
Consensus pattern (30 bp):
AGGTGATCCAATAACTAAGAATTAACTAAG
Found at i:22203757 original size:50 final size:50
Alignment explanation
Indices: 22203641--22203834 Score: 271
Period size: 50 Copynumber: 3.9 Consensus size: 50
22203631 TAATAATAAC
* * ** *
22203641 ATGCCAAAGCCATGTCCTAGACATGGTCTTACATGGGATGTTCTCATATCG
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCG
* * * ** *
22203692 ATGCCCATGCCATGTCCTAGACATGGTCTTACGGGGGACCTCTCATCTCA
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
22203742 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
*
22203792 GTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
22203835 TTACCCAAAT
Statistics
Matches: 128, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
50 94 0.73
51 34 0.27
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (50 bp):
ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
Found at i:22212173 original size:3 final size:3
Alignment explanation
Indices: 22212165--22212203 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
22212155 AAACAAACCT
22212165 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
22212204 AGTTAAAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:22214072 original size:51 final size:51
Alignment explanation
Indices: 22213991--22214284 Score: 380
Period size: 50 Copynumber: 5.8 Consensus size: 51
22213981 GATAATAACA
* * ** *
22213991 TGCCAAAGCCATGTCCCAGACATGGCCTTACATGGGATGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATCTCGG
* * * ** *
22214042 TGCCCATGTCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATCTCGG
* * * ** *
22214093 TGCCCATGTCATGTCCCAGACATGGTCTTACGGGGGAT-CTCTCATCTCGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATCTCGG
*
22214143 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATCTCGG
*
22214193 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCCCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATCTCGG
*
22214243 TGCCAACGCCATGTCCCAGACATGGCCTTACATGGGA-CCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATCCTCT
22214285 TTACCCAAAT
Statistics
Matches: 223, Mismatches: 19, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
50 140 0.63
51 83 0.37
ACGTcount: A:0.21, C:0.31, G:0.22, T:0.26
Consensus pattern (51 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATCTCGG
Found at i:22214106 original size:25 final size:25
Alignment explanation
Indices: 22214027--22214106 Score: 58
Period size: 25 Copynumber: 3.2 Consensus size: 25
22214017 CTTACATGGG
22214027 ATGTTCTCATATCGGTGCCCATGTC
1 ATGTTCTCATATCGGTGCCCATGTC
* * * **
22214052 ATG-TCCCAGA-CATGGT-CTTACATGGG
1 ATGTTCTCATATC--GGTGC--CCATGTC
22214078 ATGTTCTCATATCGGTGCCCATGTC
1 ATGTTCTCATATCGGTGCCCATGTC
22214103 ATGT
1 ATGT
22214107 CCCAGACATG
Statistics
Matches: 38, Mismatches: 10, Indels: 14
0.61 0.16 0.23
Matches are distributed among these distances:
23 1 0.03
24 6 0.16
25 14 0.37
26 10 0.26
27 6 0.16
28 1 0.03
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.34
Consensus pattern (25 bp):
ATGTTCTCATATCGGTGCCCATGTC
Found at i:22226319 original size:66 final size:68
Alignment explanation
Indices: 22226195--22226350 Score: 262
Period size: 67 Copynumber: 2.3 Consensus size: 68
22226185 CACTCAATTC
*
22226195 TTTTTCAGTCTCTTTTTCTTTTTCTATTTTTTTTCTCGCATAAAAATTTCTCTTTTCAAGTTCAC
1 TTTTTTAGTCTCTTTTTCTTTTTCTATTTTTTTTCTCGCATAAAAATTTCTCTTTTCAAGTTCAC
22226260 TA-
66 TAT
*
22226262 TTTTTTAGTCTCTTTTTCTTTTTCTA-TTTTTTTCTCGCATAAAAATTTCTCTTTTCAAGTTTAC
1 TTTTTTAGTCTCTTTTTCTTTTTCTATTTTTTTTCTCGCATAAAAATTTCTCTTTTCAAGTTCAC
22226326 TAT
66 TAT
**
22226329 TTTTTTCTTCTCTTTTTCTTTT
1 TTTTTTAGTCTCTTTTTCTTTT
22226351 CGTATTTCAA
Statistics
Matches: 84, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
66 39 0.46
67 45 0.54
ACGTcount: A:0.15, C:0.18, G:0.04, T:0.63
Consensus pattern (68 bp):
TTTTTTAGTCTCTTTTTCTTTTTCTATTTTTTTTCTCGCATAAAAATTTCTCTTTTCAAGTTCAC
TAT
Found at i:22226386 original size:36 final size:34
Alignment explanation
Indices: 22226327--22226410 Score: 84
Period size: 36 Copynumber: 2.4 Consensus size: 34
22226317 CAAGTTTACT
22226327 ATTTT-TTTCTTCTCTTTTTC-TTTTCGTATTTCA
1 ATTTTCTTTCTTCTCTTTTTCTTTTTC-TATTTCA
*
22226360 ATTTTCTTT-TTCTCATTCTTTGCTTTTTCTTTTTCA
1 ATTTTCTTTCTTCTC-TT-TTT-CTTTTTCTATTTCA
* *
22226396 CTTTTCTTTCCTCTC
1 ATTTTCTTTCTTCTC
22226411 ATCTTTTCAT
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
33 10 0.24
34 5 0.12
35 3 0.07
36 15 0.36
37 9 0.21
ACGTcount: A:0.07, C:0.23, G:0.02, T:0.68
Consensus pattern (34 bp):
ATTTTCTTTCTTCTCTTTTTCTTTTTCTATTTCA
Found at i:22226404 original size:19 final size:19
Alignment explanation
Indices: 22226342--22226404 Score: 53
Period size: 19 Copynumber: 3.4 Consensus size: 19
22226332 TTTCTTCTCT
*
22226342 TTTTC-TTTTCGTATTTCAA
1 TTTTCTTTTTC-TATTTCAC
22226361 TTTTCTTTTTCTCA-TT--C
1 TTTTCTTTTTCT-ATTTCAC
* *
22226378 TTTGCTTTTTCTTTTTCAC
1 TTTTCTTTTTCTATTTCAC
22226397 TTTTCTTT
1 TTTTCTTT
22226405 CCTCTCATCT
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
17 13 0.37
19 16 0.46
20 6 0.17
ACGTcount: A:0.08, C:0.19, G:0.03, T:0.70
Consensus pattern (19 bp):
TTTTCTTTTTCTATTTCAC
Found at i:22232607 original size:40 final size:40
Alignment explanation
Indices: 22232547--22232796 Score: 292
Period size: 40 Copynumber: 6.3 Consensus size: 40
22232537 ATTTGAATGA
*
22232547 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTT
* * * * *
22232587 TATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TGATTT
* * *
22232627 TACCCGGGTTAGGACCCGAAGGCAATTGTGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTT
*
22232667 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTT
* * *
22232707 TATCCGGGCTAAGA-CCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TGATTT
* * * * *
22232746 TATTCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTT
22232786 TATCC-GGCTAA
1 TATCCGGGCTAA
22232797 ATTCCGAAAA
Statistics
Matches: 180, Mismatches: 25, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
39 41 0.23
40 137 0.76
41 2 0.01
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTT
Found at i:22240696 original size:40 final size:40
Alignment explanation
Indices: 22240637--22240885 Score: 312
Period size: 39 Copynumber: 6.3 Consensus size: 40
22240627 CATTTGAATG
*
22240637 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * *
22240677 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TGATT
* *
22240717 ATACCCGGG-TTAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* *
22240756 TTATCCGGGTTAAGA-CCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * *
22240795 TTATCCGGGCTAAGA-CCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TGATT
* * *
22240834 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
22240874 ATATCC-GGCTAA
1 ATATCCGGGCTAA
22240886 ATTCCGAAGA
Statistics
Matches: 184, Mismatches: 19, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
38 2 0.01
39 109 0.59
40 71 0.39
41 2 0.01
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:22240881 original size:79 final size:79
Alignment explanation
Indices: 22240637--22240885 Score: 326
Period size: 79 Copynumber: 3.2 Consensus size: 79
22240627 CATTTGAATG
*
22240637 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAG-ACCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
* *
22240702 TTTGTGCGAGTTGTT
65 TTTGTGCTAGTGGTT
* * *
22240717 ATACCCGGG-TTAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGTTAAGA-CCGAAGGCA
1 ATATCCGGGCTAAGA-CCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
* *
22240780 ATTGTGCTAGTGATT
65 TTTGTGCTAGTGGTT
* * * *
22240795 TTATCCGGGCTAAGACCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCGAAGGCAATTGTGCTAG-TGATTTTATCCGGGCTAAGACCCGAAGGCA
*
22240859 TTTGTGCTTGTGGTT
65 TTTGTGCTAGTGGTT
22240874 ATATCC-GGCTAA
1 ATATCCGGGCTAA
22240886 ATTCCGAAGA
Statistics
Matches: 146, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
78 64 0.44
79 74 0.51
80 8 0.05
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.29
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCAT
TTGTGCTAGTGGTT
Found at i:22240893 original size:118 final size:118
Alignment explanation
Indices: 22240637--22240894 Score: 374
Period size: 118 Copynumber: 2.2 Consensus size: 118
22240627 CATTTGAATG
* *
22240637 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCC-GGCTAAATACCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
* *
22240702 TTTGTGCGAGTTGTTATACCCGGGTTAGACCCGAAGGCAATTGTGCTAGTGATT
65 TTTGTGCGAGTTGATATACCCGGGTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * * *
22240756 TTATCCGGGTTAAGACCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGA-CCGAAGGCAT
1 ATATCCGGCTAAATACCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCAT
* * * *
22240820 TTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTT
66 TTGTGCGAGTTGATATACCCGGG-TAAGACCCGAAGGCAATTGTGCTAGTGATT
*
22240874 ATATCCGGCTAAATTCCGAAG
1 ATATCCGGCTAAATACCGAAG
22240895 AAACTTGGGT
Statistics
Matches: 121, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
117 31 0.26
118 85 0.70
119 5 0.04
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.28
Consensus pattern (118 bp):
ATATCCGGCTAAATACCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCAT
TTGTGCGAGTTGATATACCCGGGTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:22243915 original size:26 final size:26
Alignment explanation
Indices: 22243833--22243930 Score: 67
Period size: 27 Copynumber: 3.7 Consensus size: 26
22243823 TTTTAAGTCT
* *
22243833 ATTAATTATGTCCTA-TTTCGTACAA
1 ATTAATTATGTCTTAGTTTCATACAA
* * *
22243858 CATTAATACATGTCTTAAG--TCAGACAT
1 -ATTAAT-TATGTCTT-AGTTTCATACAA
*
22243885 TTTAATTATGTCTTAGTTTCATACAA
1 ATTAATTATGTCTTAGTTTCATACAA
* *
22243911 ATTAAAGTATGTTTTAGTTT
1 ATT-AATTATGTCTTAGTTT
22243931 GTCTTAATGT
Statistics
Matches: 54, Mismatches: 12, Indels: 11
0.70 0.16 0.14
Matches are distributed among these distances:
24 2 0.04
25 7 0.13
26 19 0.35
27 25 0.46
28 1 0.02
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.45
Consensus pattern (26 bp):
ATTAATTATGTCTTAGTTTCATACAA
Found at i:22244224 original size:32 final size:31
Alignment explanation
Indices: 22244159--22244234 Score: 98
Period size: 32 Copynumber: 2.4 Consensus size: 31
22244149 CAGCTACTTT
* * *
22244159 TGTTCACACCAATAGACCATCCAATTCCTAG
1 TGTTCACACCAAAAGACCATCCAAATCCAAG
* *
22244190 TGTTCACACCTAAAAGATCGTCCAAATCCAAG
1 TGTTCACACC-AAAAGACCATCCAAATCCAAG
22244222 TGTTCACACCAAA
1 TGTTCACACCAAA
22244235 GACTCTTTAA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
31 13 0.33
32 26 0.67
ACGTcount: A:0.36, C:0.30, G:0.11, T:0.24
Consensus pattern (31 bp):
TGTTCACACCAAAAGACCATCCAAATCCAAG
Found at i:22245689 original size:5 final size:5
Alignment explanation
Indices: 22245679--22245707 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
22245669 GATAATTTGA
22245679 TAAAT TAAAT TAAAT TAAAT TAAAT TAAA
1 TAAAT TAAAT TAAAT TAAAT TAAAT TAAA
22245708 CAAAAGCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
TAAAT
Found at i:22249869 original size:22 final size:22
Alignment explanation
Indices: 22249850--22249902 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
22249840 AATGTTTATA
22249850 TTTTA-ATTTGATTAATTTTAAT
1 TTTTATATTT-ATTAATTTTAAT
* *
22249872 TTTTATATTTTTTAATTTTAGT
1 TTTTATATTTATTAATTTTAAT
*
22249894 TTATATATT
1 TTTTATATT
22249903 ATGTGTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 23 0.85
23 4 0.15
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.68
Consensus pattern (22 bp):
TTTTATATTTATTAATTTTAAT
Found at i:22259082 original size:37 final size:37
Alignment explanation
Indices: 22259032--22259110 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
22259022 TTATTACGAA
* *
22259032 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
22259069 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
22259106 GTCTT
1 GTCTT
22259111 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:22259346 original size:47 final size:47
Alignment explanation
Indices: 22259229--22259750 Score: 875
Period size: 47 Copynumber: 11.1 Consensus size: 47
22259219 CCCTTCGGGA
* * * * * * *
22259229 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
22259276 C-CGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22259322 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22259369 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22259416 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22259463 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22259510 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
22259557 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22259604 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22259651 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22259700 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22259747 CTTA
1 CTTA
22259751 CTATCATTTC
Statistics
Matches: 451, Mismatches: 21, Indels: 6
0.94 0.04 0.01
Matches are distributed among these distances:
46 37 0.08
47 368 0.82
49 46 0.10
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:22264795 original size:15 final size:14
Alignment explanation
Indices: 22264775--22264805 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
22264765 ATATTATTTA
22264775 TTAAATTAATTTAAT
1 TTAAATTAA-TTAAT
22264790 TTAAATTAATTAAT
1 TTAAATTAATTAAT
22264804 TT
1 TT
22264806 TTCTAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TTAAATTAATTAAT
Found at i:22267242 original size:51 final size:51
Alignment explanation
Indices: 22267105--22267253 Score: 178
Period size: 50 Copynumber: 2.9 Consensus size: 51
22267095 CCGTGTAATT
* *
22267105 ATTATC-ATTCGATACACGTAGTAGCCTTCACATAGTACTACACACATGATC
1 ATTATCTA-TCGATACACGTAGTAGCCTGCACATAGTACTACACACATGACC
* * * **
22267156 A--AACTTTCTGATTCACGTAGTAGCCTGCACATAGTACTACACATGTGACC
1 ATTATCTATC-GATACACGTAGTAGCCTGCACATAGTACTACACACATGACC
* *
22267206 ATTATCTATCGATACATGTAGTAGCCTGCACTTAGTACTACACACATG
1 ATTATCTATCGATACACGTAGTAGCCTGCACATAGTACTACACACATG
22267254 TTTATAGGCA
Statistics
Matches: 80, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
49 4 0.05
50 37 0.46
51 34 0.43
52 5 0.06
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (51 bp):
ATTATCTATCGATACACGTAGTAGCCTGCACATAGTACTACACACATGACC
Found at i:22270966 original size:106 final size:106
Alignment explanation
Indices: 22270615--22271087 Score: 747
Period size: 107 Copynumber: 4.5 Consensus size: 106
22270605 TCGAAACCCA
* *
22270615 GCACGTTTTCTCAAATTTCCAAATGCAAAATATTGCCTTACTTTGAAATTTTAAAAGGATATTTG
1 GCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTT-AAAGGATATTTG
22270680 GCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGG
65 GCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGG
* * *
22270722 GCACGTTTTCTCGAATTTCTAAACGCAAAATATTGCCTTATTTTAAAATTTTAATAGGATATTTG
1 GCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTTAA-AGGATATTTG
22270787 GCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGG
65 GCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGG
*
22270829 GCACGTTTTCTCGAATTTCCAAACGCAAAATATTACCTTACTTTGAAATTTTAGAAGGATATTTG
1 GCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTTA-AAGGATATTTG
* *
22270894 GCTATTTGGTTGAACG-AGAAATCGAAACCCAGCACATTAGG
65 GCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGG
* *
22270935 TCACGTTTTCTCGAATTTCCAAATGCAAAATATTGCCTTACTTTGAAATTTTATAAGGATATTTG
1 GCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTTA-AAGGATATTTG
* * *
22271000 GATATTTGGTC-AACG-AGAAATCAAAACCCAGCACATTAGG
65 GCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGG
*
22271040 GCACGTTTTATCGAATTTCCAAACGCAAAATATTGCCTTA-TTTAGAAA
1 GCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTT-GAAA
22271088 AATTTTCCTT
Statistics
Matches: 342, Mismatches: 21, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
104 3 0.01
105 69 0.20
106 96 0.28
107 173 0.51
108 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (106 bp):
GCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTTAAAGGATATTTGG
CTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGG
Found at i:22271093 original size:213 final size:214
Alignment explanation
Indices: 22270615--22271087 Score: 758
Period size: 213 Copynumber: 2.2 Consensus size: 214
22270605 TCGAAACCCA
* *
22270615 GCACGTTTTCTCAAATTTCCAAATGCAAAATATTGCCTTACTTTGAAATTTTAAAAGGATATTTG
1 GCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTTAAAAGGATATTTG
*
22270680 GCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGAATTTCTAAA
66 GCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGAATTTCCAAA
* *
22270745 CGCAAAATATTGCCTTATTTTAAAATTTTAATAGGATATTTGGCTATTTGGTCGAACGAAAAAAT
131 CGCAAAATATTGCCTTACTTTAAAATTTTAATAGGATATTTGGATATTTGGTCGAACGAAAAAAT
*
22270810 CGAAACCCAGCACATTAGG
196 CAAAACCCAGCACATTAGG
* *
22270829 GCACGTTTTCTCGAATTTCCAAACGCAAAATATTACCTTACTTTGAAATTTTAGAAGGATATTTG
1 GCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTTAAAAGGATATTTG
* * *
22270894 GCTATTTGGTTGAACG-AGAAATCGAAACCCAGCACATTAGGTCACGTTTTCTCGAATTTCCAAA
66 GCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGAATTTCCAAA
* * *
22270958 TGCAAAATATTGCCTTACTTTGAAATTTT-ATAAGGATATTTGGATATTTGGTC-AACG-AGAAA
131 CGCAAAATATTGCCTTACTTTAAAATTTTAAT-AGGATATTTGGATATTTGGTCGAACGAAAAAA
22271020 TCAAAACCCAGCACATTAGG
195 TCAAAACCCAGCACATTAGG
*
22271040 GCACGTTTTATCGAATTTCCAAACGCAAAATATTGCCTTA-TTTAGAAA
1 GCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTT-GAAA
22271088 AATTTTCCTT
Statistics
Matches: 241, Mismatches: 16, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
210 3 0.01
211 65 0.27
212 6 0.02
213 91 0.38
214 76 0.32
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (214 bp):
GCACGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTACTTTGAAATTTTAAAAGGATATTTG
GCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCGAATTTCCAAA
CGCAAAATATTGCCTTACTTTAAAATTTTAATAGGATATTTGGATATTTGGTCGAACGAAAAAAT
CAAAACCCAGCACATTAGG
Found at i:22275684 original size:16 final size:16
Alignment explanation
Indices: 22275663--22275694 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
22275653 TTAAGTTAAA
22275663 GAAAGTAAATGCAATG
1 GAAAGTAAATGCAATG
22275679 GAAAGTAAATGCAATG
1 GAAAGTAAATGCAATG
22275695 CAAATGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.06, G:0.25, T:0.19
Consensus pattern (16 bp):
GAAAGTAAATGCAATG
Found at i:22281011 original size:96 final size:95
Alignment explanation
Indices: 22280878--22281150 Score: 284
Period size: 96 Copynumber: 2.9 Consensus size: 95
22280868 GTTTGTCAAT
* * * * * * ** * *
22280878 TAAATTAATTATAAAATTTTCAAAATTGGATTA-GGTTTCGTGTTTATTGTTTTTTAAGAGAATA
1 TAAATTAATTATAAATTTTTAAAAATTAGATTAGGGTTTAGAGTTAAGAG-TTTCTAAG-GAAAA
* * *
22280942 ATTAATTAAATTAGGGTTTAGGGTTACTTGAG
64 ATCAAATAAATTAGGGTTCAGGGTTACTTGAG
* *
22280974 TAATTTAATTA-AATTTTTTAAAAATTAGATTAGGGTTTAGAGTTAAGAGTTTCTAAGGAAAAAT
1 TAAATTAATTATAAATTTTTAAAAATTAGATTAGGGTTTAGAGTTAAGAGTTTCTAAGGAAAAAT
22281038 CAAATAAATTAGGGTTCAGGGTTACTTGAG
66 CAAATAAATTAGGGTTCAGGGTTACTTGAG
* * * *
22281068 TAAATTAATTATAAATTTTCATAAAATTAGATTAGGGTTTA-ATGATT-AGGGTTTTTAAGTAAG
1 TAAATTAATTATAAATTTTTA-AAAATTAGATTAGGGTTTAGA-G-TTAAGAGTTTCTAAGGAA-
*
22281131 AACTCAAATAAATTAGGGTT
62 AAATCAAATAAATTAGGGTT
22281151 TTGGGTTTTG
Statistics
Matches: 149, Mismatches: 22, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
94 43 0.29
95 32 0.21
96 53 0.36
97 21 0.14
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.41
Consensus pattern (95 bp):
TAAATTAATTATAAATTTTTAAAAATTAGATTAGGGTTTAGAGTTAAGAGTTTCTAAGGAAAAAT
CAAATAAATTAGGGTTCAGGGTTACTTGAG
Found at i:22281062 original size:94 final size:97
Alignment explanation
Indices: 22280948--22281150 Score: 281
Period size: 94 Copynumber: 2.1 Consensus size: 97
22280938 AATAATTAAT
* * * *
22280948 TAAATTAGGGTTTAGGGTTACTTGAGTAATTTAATTA-AATTTTTTA-AAAATTAGATTAGGGTT
1 TAAATTAGGGTTCAGGGTTACTTGAGTAAATTAATTATAAATTTTCATAAAATTAGATTAGGGTT
22281011 T-A-GAGTTAAGAGTTTCTAAGGAA-AAATCAAA
66 TAATGA-TT-AGAGTTTCTAAGGAAGAAATCAAA
22281042 TAAATTAGGGTTCAGGGTTACTTGAGTAAATTAATTATAAATTTTCATAAAATTAGATTAGGGTT
1 TAAATTAGGGTTCAGGGTTACTTGAGTAAATTAATTATAAATTTTCATAAAATTAGATTAGGGTT
* * * *
22281107 TAATGATTAGGGTTTTTAAGTAAGAACTCAAA
66 TAATGATTAGAGTTTCTAAGGAAGAAATCAAA
22281139 TAAATTAGGGTT
1 TAAATTAGGGTT
22281151 TTGGGTTTTG
Statistics
Matches: 96, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
94 35 0.36
95 7 0.07
96 30 0.31
97 22 0.23
98 2 0.02
ACGTcount: A:0.38, C:0.04, G:0.19, T:0.38
Consensus pattern (97 bp):
TAAATTAGGGTTCAGGGTTACTTGAGTAAATTAATTATAAATTTTCATAAAATTAGATTAGGGTT
TAATGATTAGAGTTTCTAAGGAAGAAATCAAA
Found at i:22281157 original size:97 final size:94
Alignment explanation
Indices: 22280878--22281157 Score: 280
Period size: 94 Copynumber: 2.9 Consensus size: 94
22280868 GTTTGTCAAT
* * * * ** * *
22280878 TAAATTAATTATAAAATTTTC-AAAATTGGATTA-GGTTTCGTGTTTATTGTTTTTTAAGAGAAT
1 TAAATTAA-T-TAAAATTTTCAAAAATTAGATTAGGGTTTAGAGTTAAGAG-TTTCTAAG-GAAA
* *
22280941 AATTAATTAAATTAGGGTTTAGGGTTACTTGAG
62 AATCAAATAAATTAGGGTTTAGGGTTACTTGAG
* * *
22280974 TAATTTAATTAAATTTTTTAAAAATTAGATTAGGGTTTAGAGTTAAGAGTTTCTAAGGAAAAATC
1 TAAATTAATTAAAATTTTCAAAAATTAGATTAGGGTTTAGAGTTAAGAGTTTCTAAGGAAAAATC
*
22281039 AAATAAATTAGGGTTCAGGGTTACTTGAG
66 AAATAAATTAGGGTTTAGGGTTACTTGAG
* * *
22281068 TAAATTAATTATAAATTTTCATAAAATTAGATTAGGGTTTA-ATGATT-AGGGTTTTTAAGTAAG
1 TAAATTAATTA-AAATTTTCA-AAAATTAGATTAGGGTTTAGA-G-TTAAGAGTTTCTAAGGAA-
* *
22281131 AACTCAAATAAATTAGGGTTTTGGGTT
61 AAATCAAATAAATTAGGGTTTAGGGTT
22281158 TTGGGTTACT
Statistics
Matches: 154, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
94 51 0.33
95 27 0.18
96 50 0.32
97 26 0.17
ACGTcount: A:0.37, C:0.04, G:0.18, T:0.41
Consensus pattern (94 bp):
TAAATTAATTAAAATTTTCAAAAATTAGATTAGGGTTTAGAGTTAAGAGTTTCTAAGGAAAAATC
AAATAAATTAGGGTTTAGGGTTACTTGAG
Found at i:22281413 original size:125 final size:125
Alignment explanation
Indices: 22281190--22281604 Score: 650
Period size: 126 Copynumber: 3.3 Consensus size: 125
22281180 TTGTTAATTT
* * *
22281190 AAAGAAGCTCCCACGTGGACGCACTTCTGCTACAGTAGCTCCTGAAAAATTAATTTTGAGTAGAC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAA-TAATTTCGAGTAGAC
* * * *
22281255 GTTTCTGTGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGTATAAGTACTG
65 GTTTCTGAGCAAATAGTGTCAAAAATGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
22281316 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAATAATTTCGAGTAGACG
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAATAATTTCGAGTAGACG
*
22281381 TTTCTGAGCAAATAGTGTCAAAAATGCTTTAAGCAAGATGCTTTGTCAGCAGAAGTACTG
66 TTTCTGAGCAAATAGTGTCAAAAATGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
** * * *
22281441 AAAGAAGCTCCCATATAGACGCGCTTTTGCTATAGTAGCTCCTAAAAAAATAATTTCGAGTAGAC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCT-GAAAAATAATTTCGAGTAGAC
* * *
22281506 GTTTCTGAGAAAATAGTGTCAAAAATGTTTTAAGTAGGATGCTTTGTCAGCAGAAGTACTG
65 GTTTCTGAGCAAATAGTGTCAAAAATGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
* *
22281567 AAAGAAGCTCCCACGTGGACACGCTTTTGCTATAGTAG
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAG
22281605 TGCATGTTTG
Statistics
Matches: 267, Mismatches: 21, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
125 109 0.41
126 158 0.59
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (125 bp):
AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAATAATTTCGAGTAGACG
TTTCTGAGCAAATAGTGTCAAAAATGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
Found at i:22282695 original size:52 final size:52
Alignment explanation
Indices: 22282612--22282712 Score: 193
Period size: 52 Copynumber: 1.9 Consensus size: 52
22282602 TAAGGAAAAG
*
22282612 TAATGGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAACAA
1 TAATAGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAACAA
22282664 TAATAGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAA
1 TAATAGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAA
22282713 TATGTGCATG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.26
Consensus pattern (52 bp):
TAATAGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAACAA
Found at i:22290246 original size:34 final size:35
Alignment explanation
Indices: 22290208--22290275 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 35
22290198 TCTATAAGTA
**
22290208 AATTTCTATTTTAGTACATGGAATAATAT-AAAAG
1 AATTTCTATTTTAGTACATCAAATAATATCAAAAG
*
22290242 AATTTCTATTTTATTACATCAAATAATATCAAAA
1 AATTTCTATTTTAGTACATCAAATAATATCAAAA
22290276 TATTCAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 26 0.87
35 4 0.13
ACGTcount: A:0.46, C:0.09, G:0.06, T:0.40
Consensus pattern (35 bp):
AATTTCTATTTTAGTACATCAAATAATATCAAAAG
Found at i:22292510 original size:11 final size:11
Alignment explanation
Indices: 22292496--22292552 Score: 80
Period size: 11 Copynumber: 5.2 Consensus size: 11
22292486 TCTTTTAAGT
22292496 AGGAATTTGAG
1 AGGAATTTGAG
22292507 AGGAATTTGAG
1 AGGAATTTGAG
*
22292518 AGGAATTTAAG
1 AGGAATTTGAG
*
22292529 AGGAAATTT-AC
1 AGG-AATTTGAG
22292540 AGGAATTTGAG
1 AGGAATTTGAG
22292551 AG
1 AG
22292553 AATATTAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
10 5 0.12
11 31 0.76
12 5 0.12
ACGTcount: A:0.40, C:0.02, G:0.32, T:0.26
Consensus pattern (11 bp):
AGGAATTTGAG
Found at i:22292521 original size:22 final size:22
Alignment explanation
Indices: 22292496--22292569 Score: 80
Period size: 22 Copynumber: 3.3 Consensus size: 22
22292486 TCTTTTAAGT
22292496 AGGAATTTGAGAGGAATTTGAG
1 AGGAATTTGAGAGGAATTTGAG
* *
22292518 AGGAATTTAAGAGGAAATTT-AC
1 AGGAATTTGAGAGG-AATTTGAG
22292540 AGGAATTTGAGA-GAATATTAGAG
1 AGGAATTTGAGAGGAAT-TT-GAG
*
22292563 AGAAATT
1 AGGAATT
22292570 AAGAGAAAGG
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
20 3 0.07
21 3 0.07
22 25 0.58
23 12 0.28
ACGTcount: A:0.43, C:0.01, G:0.28, T:0.27
Consensus pattern (22 bp):
AGGAATTTGAGAGGAATTTGAG
Found at i:22298868 original size:51 final size:50
Alignment explanation
Indices: 22298737--22298873 Score: 156
Period size: 50 Copynumber: 2.7 Consensus size: 50
22298727 GAAAGTGATG
* *
22298737 GTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTGCCCGAATGATAGGTC
1 GTCACGTGT-TAGTACTATGTGCAGGCTACTATGTGTGACCG-A-GATAGGTC
* *
22298790 G-CATGTGTT-GTACTATGTGCAGGCTACTATGTGT-ACCG-GATAGCTTC
1 GTCACGTGTTAGTACTATGTGCAGGCTACTATGTGTGACCGAGATAG-GTC
22298837 GATCACGTGTATAGTACTATGTGCAGGCTACTATGTG
1 G-TCACGTGT-TAGTACTATGTGCAGGCTACTATGTG
22298874 AACTGGTATC
Statistics
Matches: 74, Mismatches: 5, Indels: 12
0.81 0.05 0.13
Matches are distributed among these distances:
46 5 0.07
47 3 0.04
49 9 0.12
50 25 0.34
51 25 0.34
52 6 0.08
53 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.31
Consensus pattern (50 bp):
GTCACGTGTTAGTACTATGTGCAGGCTACTATGTGTGACCGAGATAGGTC
Found at i:22299118 original size:16 final size:16
Alignment explanation
Indices: 22299097--22299128 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
22299087 TGATTGAAAG
*
22299097 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
22299113 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
22299129 GCAAGAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:22306187 original size:17 final size:18
Alignment explanation
Indices: 22306165--22306198 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
22306155 TTTGGGCCGA
22306165 GTGGGC-CACACAGGCAT
1 GTGGGCTCACACAGGCAT
*
22306182 GTGGGCTCACACGGGCA
1 GTGGGCTCACACAGGCA
22306199 GTCCACATGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.21, C:0.29, G:0.38, T:0.12
Consensus pattern (18 bp):
GTGGGCTCACACAGGCAT
Found at i:22315067 original size:29 final size:29
Alignment explanation
Indices: 22315030--22315089 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
22315020 TGATATTCTT
*
22315030 ATTCACATGTTAAGCATGCCATTATACTG
1 ATTCACATGTTAAGCATGCCACTATACTG
* * *
22315059 ATTCGCATGTTAAGTATGCCACTATATTG
1 ATTCACATGTTAAGCATGCCACTATACTG
22315088 AT
1 AT
22315090 CTTGAATCGC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (29 bp):
ATTCACATGTTAAGCATGCCACTATACTG
Found at i:22319390 original size:20 final size:20
Alignment explanation
Indices: 22319365--22319433 Score: 68
Period size: 20 Copynumber: 3.4 Consensus size: 20
22319355 ATATGCAATT
*
22319365 CAGGGGTACTGAAGTACAAA
1 CAGGGGCACTGAAGTACAAA
* *
22319385 CAGGGGCA-TGTAAGTGCAATT
1 CAGGGGCACTG-AAGTACAA-A
**
22319406 CAGGGGCACCAAAGTACAAA
1 CAGGGGCACTGAAGTACAAA
22319426 CAGGGGCA
1 CAGGGGCA
22319434 TGTAAGTGCA
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
19 2 0.05
20 22 0.56
21 15 0.38
ACGTcount: A:0.36, C:0.19, G:0.32, T:0.13
Consensus pattern (20 bp):
CAGGGGCACTGAAGTACAAA
Found at i:22319410 original size:21 final size:21
Alignment explanation
Indices: 22319358--22319469 Score: 122
Period size: 21 Copynumber: 5.4 Consensus size: 21
22319348 GACACATATA
*
22319358 TGCAATTCAGGGGTACTG-AAG
1 TGCAATTCAGGGGCA-TGTAAG
* *
22319379 TACAA-ACAGGGGCATGTAAG
1 TGCAATTCAGGGGCATGTAAG
***
22319399 TGCAATTCAGGGGCACCAAAG
1 TGCAATTCAGGGGCATGTAAG
* *
22319420 TACAA-ACAGGGGCATGTAAG
1 TGCAATTCAGGGGCATGTAAG
22319440 TGCAATTCAGGGGCATGTAAG
1 TGCAATTCAGGGGCATGTAAG
22319461 TGCAATTCA
1 TGCAATTCA
22319470 CGGGACAAAT
Statistics
Matches: 73, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
19 2 0.03
20 29 0.40
21 42 0.58
ACGTcount: A:0.34, C:0.17, G:0.29, T:0.20
Consensus pattern (21 bp):
TGCAATTCAGGGGCATGTAAG
Found at i:22319454 original size:41 final size:41
Alignment explanation
Indices: 22319213--22319452 Score: 223
Period size: 41 Copynumber: 5.9 Consensus size: 41
22319203 AAGTTACCCG
* * * * * *
22319213 AGTATAAACAGGGGCAC-AAATGTGCTATTTAGGGGTATCGA
1 AGTACAAACAGGGGCACGTAA-GTGCAATTCAGGGGTACCAA
* * * * * *
22319254 AGTACAAATAGGGGCACGTATGTACGATTCAAGAGTACCAA
1 AGTACAAACAGGGGCACGTAAGTGCAATTCAGGGGTACCAA
* * * *
22319295 AGTACAAACAGGGGCACATATGTGCAATTCAAGGGTACAAA
1 AGTACAAACAGGGGCACGTAAGTGCAATTCAGGGGTACCAA
* * * * **
22319336 ATTACAAATAGGGACACATATA-TGCAATTCAGGGGTACTGA
1 AGTACAAACAGGGGCACGTA-AGTGCAATTCAGGGGTACCAA
* *
22319377 AGTACAAACAGGGGCATGTAAGTGCAATTCAGGGGCACCAA
1 AGTACAAACAGGGGCACGTAAGTGCAATTCAGGGGTACCAA
*
22319418 AGTACAAACAGGGGCATGTAAGTGCAATTCAGGGG
1 AGTACAAACAGGGGCACGTAAGTGCAATTCAGGGG
22319453 CATGTAAGTG
Statistics
Matches: 164, Mismatches: 32, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
40 1 0.01
41 162 0.99
42 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.27, T:0.20
Consensus pattern (41 bp):
AGTACAAACAGGGGCACGTAAGTGCAATTCAGGGGTACCAA
Found at i:22324490 original size:20 final size:20
Alignment explanation
Indices: 22324465--22324525 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
22324455 ATCTATAATT
22324465 TAGGGGTACCGAAGTACAAA
1 TAGGGGTACCGAAGTACAAA
* ** * * *
22324485 TAGGGGCACATATGTGCAATT
1 TAGGGGTACCGAAGTACAA-A
22324506 TAGGGGTACCGAAGTACAAA
1 TAGGGGTACCGAAGTACAAA
22324526 CATGGGCATG
Statistics
Matches: 28, Mismatches: 12, Indels: 2
0.67 0.29 0.05
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.36, C:0.15, G:0.30, T:0.20
Consensus pattern (20 bp):
TAGGGGTACCGAAGTACAAA
Found at i:22324496 original size:82 final size:82
Alignment explanation
Indices: 22324380--22324575 Score: 268
Period size: 82 Copynumber: 2.4 Consensus size: 82
22324370 CGAATGTGCT
* * * *
22324380 ATTCAAGGGTACTGAAGTACAAATAGGGCCACATATGTGCAATTCTA-GTGTACTGAAGTACAAA
1 ATTCAGGGGTACTGAAGTACAAATAGGGGCACATATGTGCAATT-TAGGGGTACCGAAGTACAAA
*
22324444 CAGGGGCACGTATCTATA
65 CAGGGGCACGTAACTATA
* *
22324462 ATTTAGGGGTACCGAAGTACAAATAGGGGCACATATGTGCAATTTAGGGGTACCGAAGTACAAAC
1 ATTCAGGGGTACTGAAGTACAAATAGGGGCACATATGTGCAATTTAGGGGTACCGAAGTACAAAC
* * * *
22324527 ATGGGCATGTAAGTGTA
66 AGGGGCACGTAACTATA
*
22324544 ATTCAGGGGTACTGAAGTACAAACAGGGGCAC
1 ATTCAGGGGTACTGAAGTACAAATAGGGGCAC
22324576 GTAAGTGTAG
Statistics
Matches: 99, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
81 2 0.02
82 97 0.98
ACGTcount: A:0.35, C:0.16, G:0.27, T:0.22
Consensus pattern (82 bp):
ATTCAGGGGTACTGAAGTACAAATAGGGGCACATATGTGCAATTTAGGGGTACCGAAGTACAAAC
AGGGGCACGTAACTATA
Found at i:22324572 original size:20 final size:20
Alignment explanation
Indices: 22324507--22324572 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
22324497 TGTGCAATTT
*
22324507 AGGGGTACCGAAGTACAAAC
1 AGGGGTACTGAAGTACAAAC
* * ** *
22324527 ATGGGCA-TGTAAGTGTAATTC
1 AGGGGTACTG-AAGTACAA-AC
22324548 AGGGGTACTGAAGTACAAAC
1 AGGGGTACTGAAGTACAAAC
22324568 AGGGG
1 AGGGG
22324573 CACGTAAGTG
Statistics
Matches: 32, Mismatches: 11, Indels: 6
0.65 0.22 0.12
Matches are distributed among these distances:
19 1 0.03
20 17 0.53
21 12 0.38
22 2 0.06
ACGTcount: A:0.35, C:0.14, G:0.33, T:0.18
Consensus pattern (20 bp):
AGGGGTACTGAAGTACAAAC
Found at i:22324580 original size:41 final size:41
Alignment explanation
Indices: 22324354--22324590 Score: 228
Period size: 41 Copynumber: 5.8 Consensus size: 41
22324344 GAAGTTACCG
* *
22324354 AGTATAAACAGGGGCACG-AATGTGCT-ATTCAAGGGTACTGA
1 AGTACAAACAGGGGCACGTAA-GTG-TAATTCAGGGGTACTGA
* * * * * *
22324395 AGTACAAATAGGGCCACATATGTGCAATTCTA-GTGTACTGA
1 AGTACAAACAGGGGCACGTAAGTGTAATTC-AGGGGTACTGA
** * * *
22324436 AGTACAAACAGGGGCACGTATCTATAATTTAGGGGTACCGA
1 AGTACAAACAGGGGCACGTAAGTGTAATTCAGGGGTACTGA
* * * * * *
22324477 AGTACAAATAGGGGCACATATGTGCAATTTAGGGGTACCGA
1 AGTACAAACAGGGGCACGTAAGTGTAATTCAGGGGTACTGA
* *
22324518 AGTACAAACATGGGCATGTAAGTGTAATTCAGGGGTACTGA
1 AGTACAAACAGGGGCACGTAAGTGTAATTCAGGGGTACTGA
*
22324559 AGTACAAACAGGGGCACGTAAGTGTAGTTCAG
1 AGTACAAACAGGGGCACGTAAGTGTAATTCAG
22324591 AAAATAATTA
Statistics
Matches: 160, Mismatches: 32, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
40 1 0.01
41 157 0.98
42 2 0.01
ACGTcount: A:0.34, C:0.15, G:0.28, T:0.23
Consensus pattern (41 bp):
AGTACAAACAGGGGCACGTAAGTGTAATTCAGGGGTACTGA
Found at i:22324581 original size:20 final size:20
Alignment explanation
Indices: 22324517--22324581 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
22324507 AGGGGTACCG
* *
22324517 AAGTACAAACATGGGCATGT
1 AAGTACAAACAGGGGCACGT
** * *
22324537 AAGTGTAATTCAGGGGTAC-T
1 AAGTACAA-ACAGGGGCACGT
22324557 GAAGTACAAACAGGGGCACGT
1 -AAGTACAAACAGGGGCACGT
22324578 AAGT
1 AAGT
22324582 GTAGTTCAGA
Statistics
Matches: 32, Mismatches: 10, Indels: 6
0.67 0.21 0.12
Matches are distributed among these distances:
20 19 0.59
21 13 0.41
ACGTcount: A:0.37, C:0.14, G:0.29, T:0.20
Consensus pattern (20 bp):
AAGTACAAACAGGGGCACGT
Found at i:22328181 original size:3 final size:3
Alignment explanation
Indices: 22328123--22328165 Score: 68
Period size: 3 Copynumber: 14.3 Consensus size: 3
22328113 AAGACAAAAG
* *
22328123 AGA ATA AGA AGA AGA ACA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
22328166 AGGAGATGGA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.02, G:0.28, T:0.02
Consensus pattern (3 bp):
AGA
Found at i:22331743 original size:71 final size:71
Alignment explanation
Indices: 22331668--22331827 Score: 187
Period size: 71 Copynumber: 2.3 Consensus size: 71
22331658 CGATGTCGCA
* ** *
22331668 ACAACAACCATTCAATGTCACAACAACAAACTTGGAACCTAGATGG-GGACCATACAACCTTCAA
1 ACAACAACCACTCAATGTCACAACAACAAACTTCAAACCTAGA-GGAGAACCATACAACCTTCAA
**
22331732 TGTTGTG
65 TGTCATG
* * * * * *
22331739 ACAACAACCACTCAATGTCACGACAATAATCTTCAAACCTAGAGGATAAGCATTCAACCTTCAAT
1 ACAACAACCACTCAATGTCACAACAACAAACTTCAAACCTAGAGGAGAACCATACAACCTTCAAT
22331804 GTCATG
66 GTCATG
*
22331810 ACAAAAACCACTCAATGT
1 ACAACAACCACTCAATGT
22331828 TGCAATATCG
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
70 2 0.03
71 73 0.97
ACGTcount: A:0.40, C:0.26, G:0.12, T:0.21
Consensus pattern (71 bp):
ACAACAACCACTCAATGTCACAACAACAAACTTCAAACCTAGAGGAGAACCATACAACCTTCAAT
GTCATG
Found at i:22331842 original size:71 final size:70
Alignment explanation
Indices: 22331722--22331876 Score: 161
Period size: 71 Copynumber: 2.2 Consensus size: 70
22331712 GGGGACCATA
** * * *
22331722 CAACCTTCAATGTTGTGACAACAACCACTCAATGTCACGACAATAATCTTCAAACCTAGAGGATA
1 CAACCTTCAATGTCATGACAAAAACCACTCAATGT-ACGACAATAATCTTCAAACCAAGAGGACA
22331787 AGCATT
65 AGCATT
* ** * *
22331793 CAACCTTCAATGTCATGACAAAAACCACTCAATGT-TG-CAATATCGATCTTTGAACCAATAGGG
1 CAACCTTCAATGTCATGACAAAAACCACTCAATGTACGACAATA---ATCTTCAAACCAAGAGGA
22331856 CAAGCATT
63 CAAGCATT
*
22331864 CAACGTTCAATGT
1 CAACCTTCAATGT
22331877 TGTGACAATG
Statistics
Matches: 70, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
68 5 0.07
69 1 0.01
71 64 0.91
ACGTcount: A:0.37, C:0.25, G:0.14, T:0.25
Consensus pattern (70 bp):
CAACCTTCAATGTCATGACAAAAACCACTCAATGTACGACAATAATCTTCAAACCAAGAGGACAA
GCATT
Found at i:22333937 original size:12 final size:11
Alignment explanation
Indices: 22333909--22333952 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
22333899 AGATAAATGT
*
22333909 TATTTAATTAA
1 TATTTTATTAA
22333920 TATTTTATTAA
1 TATTTTATTAA
* *
22333931 TATTTTTAGTAT
1 TA-TTTTATTAA
22333943 TATTTTATTA
1 TATTTTATTA
22333953 TTAAATGATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
11 19 0.68
12 9 0.32
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:22340173 original size:30 final size:30
Alignment explanation
Indices: 22340026--22340172 Score: 161
Period size: 30 Copynumber: 4.8 Consensus size: 30
22340016 TGAAGTCTAA
*
22340026 TATATGAGAACACCTTTGTGTCTATCTGATGT
1 TATATG-G-ACACCTTTGTGGCTATCTGATGT
*
22340058 TATAAGGACACCTTTGTGGCTATCTGATGT
1 TATATGGACACCTTTGTGGCTATCTGATGT
** *
22340088 TATGA-CAACACCTTTGTGGCTATTTGATGT
1 TAT-ATGGACACCTTTGTGGCTATCTGATGT
* * * *
22340118 TATTTGGGCACCTTTATGGCTATCTAATGT
1 TATATGGACACCTTTGTGGCTATCTGATGT
* *
22340148 TACATGGACACCTTTGTAGCTATCT
1 TATATGGACACCTTTGTGGCTATCT
22340173 ATCTATCTTT
Statistics
Matches: 96, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
30 89 0.93
31 2 0.02
32 5 0.05
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.39
Consensus pattern (30 bp):
TATATGGACACCTTTGTGGCTATCTGATGT
Found at i:22340766 original size:40 final size:43
Alignment explanation
Indices: 22340711--22340815 Score: 144
Period size: 40 Copynumber: 2.4 Consensus size: 43
22340701 TTAATTTTAA
*
22340711 TAAACTCATCTTAGTTAATAATTGAGTTGTTGGAC-TA-T-AT
1 TAAACTCATTTTAGTTAATAATTGAGTTGTTGGACTTATTCAT
*
22340751 TAAACTCATTTTAGTTAATAATTGCGTTGTTGGACTTTATTTTCAT
1 TAAACTCATTTTAGTTAATAATTGAGTTGTTGGAC-TTA--TTCAT
22340797 TAAACTCATTTTAGTTAAT
1 TAAACTCATTTTAGTTAAT
22340816 TAATGGTTGG
Statistics
Matches: 57, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
40 33 0.58
42 2 0.04
45 1 0.02
46 21 0.37
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.47
Consensus pattern (43 bp):
TAAACTCATTTTAGTTAATAATTGAGTTGTTGGACTTATTCAT
Found at i:22340942 original size:9 final size:9
Alignment explanation
Indices: 22340915--22340961 Score: 58
Period size: 9 Copynumber: 4.9 Consensus size: 9
22340905 TAAGTTTAAT
22340915 ATGTGTTTAA
1 ATGTGTTT-A
*
22340925 ATATGTTTA
1 ATGTGTTTA
22340934 ATGTGTTTA
1 ATGTGTTTA
22340943 ATGTGTTTTTA
1 ATGTG--TTTA
22340954 ATGTGTTT
1 ATGTGTTT
22340962 TGATTGTAGG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
9 17 0.52
10 7 0.21
11 9 0.27
ACGTcount: A:0.23, C:0.00, G:0.19, T:0.57
Consensus pattern (9 bp):
ATGTGTTTA
Found at i:22340956 original size:11 final size:11
Alignment explanation
Indices: 22340930--22340962 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
22340920 TTTAAATATG
22340930 TTTAATGTG--
1 TTTAATGTGTT
22340939 TTTAATGTGTT
1 TTTAATGTGTT
22340950 TTTAATGTGTT
1 TTTAATGTGTT
22340961 TT
1 TT
22340963 GATTGTAGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 9 0.41
11 13 0.59
ACGTcount: A:0.18, C:0.00, G:0.18, T:0.64
Consensus pattern (11 bp):
TTTAATGTGTT
Found at i:22347170 original size:9 final size:10
Alignment explanation
Indices: 22347140--22347173 Score: 52
Period size: 9 Copynumber: 3.4 Consensus size: 10
22347130 AGCTTATTAA
22347140 GTTTAATATGT
1 GTTTAA-ATGT
22347151 GTTTAAATGT
1 GTTTAAATGT
22347161 GTTT-AATGT
1 GTTTAAATGT
22347170 GTTT
1 GTTT
22347174 TTGATGTGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 9 0.39
10 8 0.35
11 6 0.26
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.56
Consensus pattern (10 bp):
GTTTAAATGT
Found at i:22350635 original size:17 final size:18
Alignment explanation
Indices: 22350602--22350636 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
22350592 GAAATAAAAC
*
22350602 ATGACAATGAAATATCAG
1 ATGACAATGAAAAATCAG
22350620 ATGACAA-GAAAAATCAG
1 ATGACAATGAAAAATCAG
22350637 CACCACCAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.54, C:0.11, G:0.17, T:0.17
Consensus pattern (18 bp):
ATGACAATGAAAAATCAG
Found at i:22350868 original size:20 final size:18
Alignment explanation
Indices: 22350840--22350887 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 18
22350830 AAGAAAAGTG
22350840 ATAATAATAATAAAATAAA
1 ATAA-AATAATAAAATAAA
* *
22350859 TATAACAATAATGACATAAA
1 -ATAA-AATAATAAAATAAA
22350879 ATAAAATAA
1 ATAAAATAA
22350888 GAGTTGATGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 5 0.20
19 4 0.16
20 16 0.64
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.25
Consensus pattern (18 bp):
ATAAAATAATAAAATAAA
Found at i:22353804 original size:98 final size:98
Alignment explanation
Indices: 22353676--22353868 Score: 296
Period size: 98 Copynumber: 2.0 Consensus size: 98
22353666 AAAAATCATA
* * *
22353676 AAGGAAATTTTCCGAGTTTAGGATTATAAAGGAATTGTGTCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTAGGATTATAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
* *
22353741 AAATCTTGGATAAGCGGATGTTCTTTTAAAGTG
66 AAATCTTGGATAAGCGAATGTTCCTTTAAAGTG
* * * *
22353774 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACTTATTGGGTGTGTTTTCTT
1 AAGGAAATATTCCGAGTTTAGGATTATAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
*
22353839 AAATCTTGGATAAGTGAATGTTCCTTTAAA
66 AAATCTTGGATAAGCGAATGTTCCTTTAAA
22353869 ATTTCTCATT
Statistics
Matches: 85, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
98 85 1.00
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.37
Consensus pattern (98 bp):
AAGGAAATATTCCGAGTTTAGGATTATAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
AAATCTTGGATAAGCGAATGTTCCTTTAAAGTG
Found at i:22357309 original size:267 final size:267
Alignment explanation
Indices: 22356834--22357366 Score: 1057
Period size: 267 Copynumber: 2.0 Consensus size: 267
22356824 ATATACAGAC
22356834 TTTAGCAGTACAAGCTGACACGCTGAGTGTGAAATATGAATTAGAGTCAGATCGGGGGCAAGAAT
1 TTTAGCAGTACAAGCTGACACGCTGAGTGTGAAATATGAATTAGAGTCAGATCGGGGGCAAGAAT
22356899 TGGCTTTGTTACTTAGAAAGATTAGAGTTCTGGGTACTAGGGCGAAGTTGTACTTGTAATTCATT
66 TGGCTTTGTTACTTAGAAAGATTAGAGTTCTGGGTACTAGGGCGAAGTTGTACTTGTAATTCATT
22356964 TTATGTAAAGGAATTTAATTTCTAGTAATGTTTTCTTATATGGAATTGAATTCAAATTGACGCCT
131 TTATGTAAAGGAATTTAATTTCTAGTAATGTTTTCTTATATGGAATTGAATTCAAATTGACGCCT
22357029 TTTCTGCATTCATTTCATGCATTGCATTGTTTCATATGCATTAATAAATACATTAAGGGATTCTA
196 TTTCTGCATTCATTTCATGCATTGCATTGTTTCATATGCATTAATAAATACATTAAGGGATTCTA
22357094 ATTAATT
261 ATTAATT
22357101 TTTAGCAGTACAAGCTGACACGCTGAGTGTGAAATATGAATTAGAGTCAGATCGGGGGCAAGAAT
1 TTTAGCAGTACAAGCTGACACGCTGAGTGTGAAATATGAATTAGAGTCAGATCGGGGGCAAGAAT
22357166 TGGCTTTGTTACTTAGAAAGATTAGAGTTCTGGGTACTAGGGCGAAGTTGTACTTGTAATTCATT
66 TGGCTTTGTTACTTAGAAAGATTAGAGTTCTGGGTACTAGGGCGAAGTTGTACTTGTAATTCATT
22357231 TTATGTAAAGGAATTTAATTTCTAGTAATGTTTTCTTATATGGAATTGAATTCAAATTGACGCCT
131 TTATGTAAAGGAATTTAATTTCTAGTAATGTTTTCTTATATGGAATTGAATTCAAATTGACGCCT
*
22357296 TTTCTGCATTCATTTCATGCATTTCATTGTTTCATATGCATTAATAAATACATTAAGGGATTCTA
196 TTTCTGCATTCATTTCATGCATTGCATTGTTTCATATGCATTAATAAATACATTAAGGGATTCTA
22357361 ATTAAT
261 ATTAAT
22357367 CTAAATCACT
Statistics
Matches: 265, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
267 265 1.00
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.38
Consensus pattern (267 bp):
TTTAGCAGTACAAGCTGACACGCTGAGTGTGAAATATGAATTAGAGTCAGATCGGGGGCAAGAAT
TGGCTTTGTTACTTAGAAAGATTAGAGTTCTGGGTACTAGGGCGAAGTTGTACTTGTAATTCATT
TTATGTAAAGGAATTTAATTTCTAGTAATGTTTTCTTATATGGAATTGAATTCAAATTGACGCCT
TTTCTGCATTCATTTCATGCATTGCATTGTTTCATATGCATTAATAAATACATTAAGGGATTCTA
ATTAATT
Found at i:22365639 original size:45 final size:44
Alignment explanation
Indices: 22365533--22365963 Score: 174
Period size: 45 Copynumber: 9.7 Consensus size: 44
22365523 TCGCATCTAG
* * *
22365533 TCTTATCTCCCTGAAGTTACAGTGGAGCAGACTAAGTAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGAAAA
*
22365577 TCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAG-ATGGAAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGTA-AGAAAA
* * * ** *
22365622 TCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTAAAG-CCGATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGTAAGAAAA
* * * * * ** *
22365666 TCCTATCTCCCTGAAGTTACATTGGAGCGGATTAA--AACCTCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAA--GAAAA
* * * * *** *
22365710 TCTTATCTCTCTGAAGTTACAG-AGAGCAGA-T-CGT-ATCTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGAAAA
* * * *
22365750 TCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAGCAAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-TAAGAAAA
* * * *
22365795 TCTTATC-CTCCTGAAGTTGCAGTGAGTTGCAGA--GAGTAGATCGCATCTAG
1 TCTTATCTC-CCTGAAGTTGCAGTG-G-AGCAGACTAAGTA-A--G-A--AAA
* * * *
22365845 TCTTATCTCCCTGAAATTGCAGTGGAGCAGACTAAGCAAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-TAAGAAAA
* * *
22365890 TCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACCGAAG-ATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGA-CTAAGTA-AGAAAA
*
22365935 TCTTATCTCCCTGAAGTTGCGGTGGAGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCA
22365964 TATTAAAGCC
Statistics
Matches: 296, Mismatches: 57, Indels: 67
0.70 0.14 0.16
Matches are distributed among these distances:
40 22 0.07
41 6 0.02
42 3 0.01
43 12 0.04
44 85 0.29
45 117 0.40
46 11 0.04
47 5 0.02
48 6 0.02
49 1 0.00
50 26 0.09
51 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.26
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGAAAA
Found at i:22365892 original size:95 final size:95
Alignment explanation
Indices: 22365724--22365915 Score: 339
Period size: 95 Copynumber: 2.0 Consensus size: 95
22365714 ATCTCTCTGA
* *
22365724 AGTTACAGAGAGCAGATCGTATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAGCAA
1 AGTTACAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAATTGCAGTGGAACAGACTAAGCAA
22365789 AGCAAGTCTTATCCTCCTGAAGTTGCAGTG
66 AGCAAGTCTTATCCTCCTGAAGTTGCAGTG
* * *
22365819 AGTTGCAGAGAGTAGATCGCATCTAGTCTTATCTCCCTGAAATTGCAGTGGAGCAGACTAAGCAA
1 AGTTACAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAATTGCAGTGGAACAGACTAAGCAA
22365884 AGCAAGTCTTATCCTCCTGAAGTTGCAGTG
66 AGCAAGTCTTATCCTCCTGAAGTTGCAGTG
22365914 AG
1 AG
22365916 GCAGACCGAA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
95 92 1.00
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (95 bp):
AGTTACAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAATTGCAGTGGAACAGACTAAGCAA
AGCAAGTCTTATCCTCCTGAAGTTGCAGTG
Found at i:22366096 original size:66 final size:67
Alignment explanation
Indices: 22365931--22366098 Score: 293
Period size: 67 Copynumber: 2.5 Consensus size: 67
22365921 CCGAAGATGG
*
22365931 CAAATCTTATCTCCCTGAAGTTGCGGTGGAGCATATTAAAGCCAACAGTGGAGCGGGTTAAAAAC
1 CAAATCTTATCTCCCTGAAGTTGCGGTGGAGCAGATTAAAGCCAACAGTGGAGCGGGTTAAAAAC
22365996 CT
66 CT
22365998 CAAATCTTATCTCCCTGAAGTTGCGGTGGAGCAGATTAAAGCCAACAGTGGAGCGGG-TAAAAAC
1 CAAATCTTATCTCCCTGAAGTTGCGGTGGAGCAGATTAAAGCCAACAGTGGAGCGGGTTAAAAAC
22366062 CT
66 CT
* * *
22366064 CAGATCTTATCTCCCTGAAGTTGCAGTAGAGCAGA
1 CAAATCTTATCTCCCTGAAGTTGCGGTGGAGCAGA
22366099 CTGGTAGATC
Statistics
Matches: 97, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
66 41 0.42
67 56 0.58
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.23
Consensus pattern (67 bp):
CAAATCTTATCTCCCTGAAGTTGCGGTGGAGCAGATTAAAGCCAACAGTGGAGCGGGTTAAAAAC
CT
Found at i:22368103 original size:98 final size:98
Alignment explanation
Indices: 22367982--22368176 Score: 327
Period size: 98 Copynumber: 2.0 Consensus size: 98
22367972 AAAAATCATA
* *
22367982 AAGGAAATTTTCCGAGTTTGGGATTATAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGGGATTATAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
* *
22368047 AAATCTTGGATAAGCGGATGTTCTTTTAAAGTG
66 AAATCTTGGATAAGCGAATGTTCCTTTAAAGTG
* *
22368080 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGTTTTCTT
1 AAGGAAATATTCCGAGTTTGGGATTATAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
*
22368145 AAATCTTGGATAAGTGAATGTTCCTTTAAAGT
66 AAATCTTGGATAAGCGAATGTTCCTTTAAAGT
22368177 TTTTCATTAT
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 90 1.00
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.36
Consensus pattern (98 bp):
AAGGAAATATTCCGAGTTTGGGATTATAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
AAATCTTGGATAAGCGAATGTTCCTTTAAAGTG
Found at i:22374727 original size:5 final size:5
Alignment explanation
Indices: 22374717--22374745 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
22374707 GGTAATTTGA
22374717 TAAAT TAAAT TAAAT TAAAT TAAAT TAAA
1 TAAAT TAAAT TAAAT TAAAT TAAAT TAAA
22374746 AGAGATCATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
TAAAT
Found at i:22375551 original size:29 final size:29
Alignment explanation
Indices: 22375519--22375730 Score: 230
Period size: 29 Copynumber: 7.3 Consensus size: 29
22375509 AGGATAGTTT
*
22375519 CGACTATCAACTATGAAAAGGGATGGTGA
1 CGACCATCAACTATGAAAAGGGATGGTGA
* *
22375548 CGACCATCAACTATGAAAAGCGATGTTGA
1 CGACCATCAACTATGAAAAGGGATGGTGA
* * **
22375577 CGACCATCAAATATGAAAAGGGATAGTTT
1 CGACCATCAACTATGAAAAGGGATGGTGA
* *
22375606 CGACTATCGACTATGAAAAGGGATGGTGA
1 CGACCATCAACTATGAAAAGGGATGGTGA
* * **
22375635 CGACCATCGATTAATGAAAAGGGATGGTTC
1 CGACCATCAACT-ATGAAAAGGGATGGTGA
**
22375665 CGACCATCGAA-TATGAAAAGGGATGGAAA
1 CGACCATC-AACTATGAAAAGGGATGGTGA
* *
22375694 CGACCATCGAA-AATGAAAAGGGATGGTTA
1 CGACCATC-AACTATGAAAAGGGATGGTGA
22375723 CGACCATC
1 CGACCATC
22375731 GTTTAGCATA
Statistics
Matches: 155, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
29 130 0.84
30 24 0.15
31 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.20
Consensus pattern (29 bp):
CGACCATCAACTATGAAAAGGGATGGTGA
Found at i:22375592 original size:58 final size:58
Alignment explanation
Indices: 22375519--22375730 Score: 257
Period size: 58 Copynumber: 3.6 Consensus size: 58
22375509 AGGATAGTTT
* * * * *
22375519 CGACTATCAACTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGCGATGTTGA
1 CGACCATCAAATATGAAAAGGGATGGTTACGACCATCAACTATGAAAAGGGATGGTGA
* * * *
22375577 CGACCATCAAATATGAAAAGGGATAGTTTCGACTATCGACTATGAAAAGGGATGGTGA
1 CGACCATCAAATATGAAAAGGGATGGTTACGACCATCAACTATGAAAAGGGATGGTGA
* * * **
22375635 CGACCATCGATTAATGAAAAGGGATGGTTCCGACCATCGAA-TATGAAAAGGGATGGAAA
1 CGACCATCAAAT-ATGAAAAGGGATGGTTACGACCATC-AACTATGAAAAGGGATGGTGA
22375694 CGACCATCGAAA-ATGAAAAGGGATGGTTACGACCATC
1 CGACCATC-AAATATGAAAAGGGATGGTTACGACCATC
22375731 GTTTAGCATA
Statistics
Matches: 131, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
58 83 0.63
59 46 0.35
60 2 0.02
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.20
Consensus pattern (58 bp):
CGACCATCAAATATGAAAAGGGATGGTTACGACCATCAACTATGAAAAGGGATGGTGA
Found at i:22375703 original size:88 final size:87
Alignment explanation
Indices: 22375519--22375731 Score: 275
Period size: 88 Copynumber: 2.4 Consensus size: 87
22375509 AGGATAGTTT
* *
22375519 CGACTATCAACTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGCGATGTTGACGACCAT
1 CGACTATCGACTATGAAAAGGGATGGTGACGACCATCGACTATGAAAAGCGATGTTGACGACCAT
***
22375584 CAAATATGAAAAGGGATAGTTT
66 CAAATATGAAAAGGGATAGAAA
* * *
22375606 CGACTATCGACTATGAAAAGGGATGGTGACGACCATCGATTAATGAAAAGGGATGGTT-CCGACC
1 CGACTATCGACTATGAAAAGGGATGGTGACGACCATCGACT-ATGAAAAGCGAT-GTTGACGACC
* *
22375670 ATCGAATATGAAAAGGGATGGAAA
64 ATCAAATATGAAAAGGGATAGAAA
* ** *
22375694 CGACCATCGAAAATGAAAAGGGATGGTTACGACCATCG
1 CGACTATCGACTATGAAAAGGGATGGTGACGACCATCG
22375732 TTTAGCATAC
Statistics
Matches: 110, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
87 38 0.35
88 69 0.63
89 3 0.03
ACGTcount: A:0.38, C:0.16, G:0.26, T:0.20
Consensus pattern (87 bp):
CGACTATCGACTATGAAAAGGGATGGTGACGACCATCGACTATGAAAAGCGATGTTGACGACCAT
CAAATATGAAAAGGGATAGAAA
Found at i:22385311 original size:8 final size:9
Alignment explanation
Indices: 22385284--22385309 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
22385274 TCCCACCTAA
22385284 GGGTTTTTT
1 GGGTTTTTT
22385293 GGGTTTTTT
1 GGGTTTTTT
22385302 GGGTTTTT
1 GGGTTTTT
22385310 GGAAAAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.35, T:0.65
Consensus pattern (9 bp):
GGGTTTTTT
Found at i:22385605 original size:125 final size:127
Alignment explanation
Indices: 22385428--22385678 Score: 373
Period size: 125 Copynumber: 2.0 Consensus size: 127
22385418 AAATCAAAGG
* * * *
22385428 AGGATGATTTATCAGAAGAATTTTTGAAGTCGCGCCCACGTGTACGCGCTTTTGCTACAGTAGGT
1 AGGATGATTTATAAGAAGAATTTTTGAAATCGCGCCCACGTGGACGCACTTTTGCTACAGTAGGT
22385493 CCTGGAA-AAATAATTTCAACTTGACATTTCTGAGCAAATAGTTT-AAAAAACGCTTCAAGC
66 CCTGGAAGAAATAATTTCAACTTGACATTTCTGAGCAAATAGTTTAAAAAAACGCTTCAAGC
* * * *
22385553 AGGATGCTTTATAAGAA-AATTTTGTGAAATCGCGCCCTCGTGGATGCACTTTTGCTACAGTTGG
1 AGGATGATTTATAAGAAGAATTTT-TGAAATCGCGCCCACGTGGACGCACTTTTGCTACAGTAGG
* * *
22385617 TCCTGGAAGAAATAATTTCAAGTTGACGTTTTTGAGCAAATAGTTTAAAAAAACGCTTCAAG
65 TCCTGGAAGAAATAATTTCAACTTGACATTTCTGAGCAAATAGTTTAAAAAAACGCTTCAAG
22385679 TAGGGGTGGA
Statistics
Matches: 112, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
124 6 0.05
125 57 0.51
126 34 0.30
127 15 0.13
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.31
Consensus pattern (127 bp):
AGGATGATTTATAAGAAGAATTTTTGAAATCGCGCCCACGTGGACGCACTTTTGCTACAGTAGGT
CCTGGAAGAAATAATTTCAACTTGACATTTCTGAGCAAATAGTTTAAAAAAACGCTTCAAGC
Found at i:22386435 original size:29 final size:29
Alignment explanation
Indices: 22386403--22386459 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
22386393 ATCGTTATGC
*
22386403 ATATATATTATCACTAGTTAAAAATGAAT
1 ATATATATTATCACCAGTTAAAAATGAAT
22386432 ATATATATTATCACCAGTTAAAAATGAA
1 ATATATATTATCACCAGTTAAAAATGAA
22386460 GAAAAGAACA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.49, C:0.09, G:0.07, T:0.35
Consensus pattern (29 bp):
ATATATATTATCACCAGTTAAAAATGAAT
Found at i:22387606 original size:31 final size:30
Alignment explanation
Indices: 22387557--22387615 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 30
22387547 TTTGTTTAGA
22387557 AAAAAATATATTTTAAAATTATT-AAATAGG
1 AAAAAATATATTTTAAAATT-TTCAAATAGG
*
22387587 AAAAAATATTTTTTAAAAATTTTCAAATA
1 AAAAAATATATTTT-AAAATTTTCAAATA
22387616 ATATAAATTC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 15 0.58
31 11 0.42
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.39
Consensus pattern (30 bp):
AAAAAATATATTTTAAAATTTTCAAATAGG
Found at i:22388956 original size:7 final size:7
Alignment explanation
Indices: 22388941--22388970 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
22388931 ATCAAATAAG
22388941 TTAGGGT
1 TTAGGGT
*
22388948 TTAGAGT
1 TTAGGGT
22388955 TTAGGGT
1 TTAGGGT
22388962 TTAGGGT
1 TTAGGGT
22388969 TT
1 TT
22388971 GTCAATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.47
Consensus pattern (7 bp):
TTAGGGT
Found at i:22389392 original size:21 final size:21
Alignment explanation
Indices: 22389368--22389409 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
22389358 CAGCTTCCAA
* * *
22389368 CGGGGGTTGTGGTTGCTCCGG
1 CGGGGATTCTGGTTCCTCCGG
22389389 CGGGGATTCTGGTTCCTCCGG
1 CGGGGATTCTGGTTCCTCCGG
22389410 TAGGGTATCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.02, C:0.24, G:0.45, T:0.29
Consensus pattern (21 bp):
CGGGGATTCTGGTTCCTCCGG
Found at i:22389691 original size:18 final size:18
Alignment explanation
Indices: 22389665--22389707 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
22389655 GACTCGAAAA
* * *
22389665 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGCT
22389683 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
22389701 AGGATAC
1 AGGATAC
22389708 GCACCTGGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.09, G:0.28, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:22390798 original size:11 final size:11
Alignment explanation
Indices: 22390782--22390806 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
22390772 TTTAGGATTT
22390782 AAAAAAATTCA
1 AAAAAAATTCA
22390793 AAAAAAATTCA
1 AAAAAAATTCA
22390804 AAA
1 AAA
22390807 TTTTTTAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAAAATTCA
Found at i:22390861 original size:11 final size:11
Alignment explanation
Indices: 22390842--22390926 Score: 56
Period size: 11 Copynumber: 8.0 Consensus size: 11
22390832 TGATTTAAGA
22390842 GAAATTTGAGAG
1 GAAA-TTGAGAG
22390854 GAAATTGAGAG
1 GAAATTGAGAG
* *
22390865 CAAATTGAGAT
1 GAAATTGAGAG
*
22390876 TAAA-T-AG-G
1 GAAATTGAGAG
*
22390884 G-ATTTGAGA-
1 GAAATTGAGAG
22390893 GAAATTTG-GAAG
1 GAAA-TTGAG-AG
22390905 GAAATTGAGAG
1 GAAATTGAGAG
*
22390916 CAAATTGAGAG
1 GAAATTGAGAG
22390927 AATAATAGAG
Statistics
Matches: 57, Mismatches: 8, Indels: 17
0.70 0.10 0.21
Matches are distributed among these distances:
7 1 0.02
8 1 0.02
9 5 0.09
10 3 0.05
11 38 0.67
12 9 0.16
ACGTcount: A:0.44, C:0.02, G:0.31, T:0.24
Consensus pattern (11 bp):
GAAATTGAGAG
Found at i:22390881 original size:51 final size:51
Alignment explanation
Indices: 22390826--22390925 Score: 166
Period size: 51 Copynumber: 2.0 Consensus size: 51
22390816 AATAATTAAA
*
22390826 AAATAGTGATTTAAGAGAAATTT-GAGAGGAAATTGAGAGCAAATTGAGATT
1 AAATAGGGATTTAAGAGAAATTTGGA-AGGAAATTGAGAGCAAATTGAGATT
*
22390877 AAATAGGGATTTGAGAGAAATTTGGAAGGAAATTGAGAGCAAATTGAGA
1 AAATAGGGATTTAAGAGAAATTTGGAAGGAAATTGAGAGCAAATTGAGA
22390926 GAATAATAGA
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
51 44 0.96
52 2 0.04
ACGTcount: A:0.45, C:0.02, G:0.28, T:0.25
Consensus pattern (51 bp):
AAATAGGGATTTAAGAGAAATTTGGAAGGAAATTGAGAGCAAATTGAGATT
Found at i:22392309 original size:30 final size:30
Alignment explanation
Indices: 22392255--22392311 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
22392245 AATTCAATAA
*
22392255 TTAAATTTTTAATACTTCAAATTTCAACAT
1 TTAAATTTTTAACACTTCAAATTTCAACAT
*
22392285 TTAAATTTTTAGCACTT-AATATTTCAA
1 TTAAATTTTTAACACTTCAA-ATTTCAA
22392312 TTTGTTAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 2 0.08
30 22 0.92
ACGTcount: A:0.39, C:0.12, G:0.02, T:0.47
Consensus pattern (30 bp):
TTAAATTTTTAACACTTCAAATTTCAACAT
Found at i:22393689 original size:10 final size:11
Alignment explanation
Indices: 22393666--22393690 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
22393656 AGGGTATAGT
22393666 AAAATATTTAA
1 AAAATATTTAA
22393677 AAAATATTTAA
1 AAAATATTTAA
22393688 AAA
1 AAA
22393691 GAAAGAGATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
AAAATATTTAA
Found at i:22393964 original size:29 final size:30
Alignment explanation
Indices: 22393925--22393984 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
22393915 ATTTTAATTT
*
22393925 AAAATCAAAA-TTAGCAGTAAAATTCAATA
1 AAAATCAAAATTTAGCAGTAAAATCCAATA
* * *
22393954 AAAATGAAAATTTAGTATTAAAATCCAATA
1 AAAATCAAAATTTAGCAGTAAAATCCAATA
22393984 A
1 A
22393985 TATAAAAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 9 0.35
30 17 0.65
ACGTcount: A:0.58, C:0.08, G:0.07, T:0.27
Consensus pattern (30 bp):
AAAATCAAAATTTAGCAGTAAAATCCAATA
Found at i:22397698 original size:22 final size:21
Alignment explanation
Indices: 22397668--22397708 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
22397658 CAAATGTGTT
*
22397668 AAAATTATTAATTAAAAATAAA
1 AAAAATATT-ATTAAAAATAAA
*
22397690 AAAAATATTTTTAAAAATA
1 AAAAATATTATTAAAAATA
22397709 CTAATTACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (21 bp):
AAAAATATTATTAAAAATAAA
Found at i:22400664 original size:21 final size:21
Alignment explanation
Indices: 22400631--22400673 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
22400621 TTTTTAACAA
22400631 TATTAATATAATA-ATTTATAT
1 TATTAATATAATATATTT-TAT
22400652 TATT-ATATAAATATATTTTAT
1 TATTAATAT-AATATATTTTAT
22400673 T
1 T
22400674 CTAACATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 4 0.20
21 12 0.60
22 4 0.20
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
TATTAATATAATATATTTTAT
Found at i:22403212 original size:70 final size:70
Alignment explanation
Indices: 22403094--22403380 Score: 380
Period size: 70 Copynumber: 4.1 Consensus size: 70
22403084 TTGAATTTGT
* * * *
22403094 GAGCCTTAAAGCTATAGCTGGGAGCTTCAGCTCGCACTTACTAGTTTGGAGGCTGGGGTGTT-AA
1 GAGCCTTAAAGCTACAGCTGGGAGCTTCAGCTTGCACTAACTAGTTTGGAGGCTGCGGTGTTGAA
22403158 GCCTAC
66 -CCTAC
* * * * *
22403164 GAGCTTTAAAGCTACAGTTGGGAGCTTCAGCTTACACTAACTAGTTTGGAGGTTGCGGTGTTAAA
1 GAGCCTTAAAGCTACAGCTGGGAGCTTCAGCTTGCACTAACTAGTTTGGAGGCTGCGGTGTTGAA
* *
22403229 CTTGC
66 CCTAC
* * * * *
22403234 AAGCCCTAAAGCTACAGCTGGGAGCTTCAACTTGCACTAACTATTTTGGAGGCTGCGGTTTTGAA
1 GAGCCTTAAAGCTACAGCTGGGAGCTTCAGCTTGCACTAACTAGTTTGGAGGCTGCGGTGTTGAA
22403299 CCTAC
66 CCTAC
*
22403304 GAGCCTTAAAGCTACAGCTGGGAGCTTCAGCTTGCACTAACT-GTTTTGGAGGCTGTGGTGTTGA
1 GAGCCTTAAAGCTACAGCTGGGAGCTTCAGCTTGCACTAACTAG-TTTGGAGGCTGCGGTGTTGA
*
22403368 ACCTAT
65 ACCTAC
22403374 GAGCCTT
1 GAGCCTT
22403381 TAGATCACAA
Statistics
Matches: 186, Mismatches: 29, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
70 184 0.99
71 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (70 bp):
GAGCCTTAAAGCTACAGCTGGGAGCTTCAGCTTGCACTAACTAGTTTGGAGGCTGCGGTGTTGAA
CCTAC
Found at i:22403406 original size:70 final size:70
Alignment explanation
Indices: 22403094--22403420 Score: 347
Period size: 70 Copynumber: 4.7 Consensus size: 70
22403084 TTGAATTTGT
* * * * * *
22403094 GAGCCTTAAAGCTATAGCTGGGAGCTTCAGCTCGCACTTACTAGTTTGGAGGCTGGGGTGTT-AA
1 GAGCCTTAAAGCTACAACTGGGAGCTTCAGCTTGCACTAACTATTTTGGAGGCTGCGGTGTTGAA
22403158 GCCTAC
66 -CCTAC
* ** * * * *
22403164 GAGCTTTAAAGCTACAGTTGGGAGCTTCAGCTTACACTAACTAGTTTGGAGGTTGCGGTGTTAAA
1 GAGCCTTAAAGCTACAACTGGGAGCTTCAGCTTGCACTAACTATTTTGGAGGCTGCGGTGTTGAA
* *
22403229 CTTGC
66 CCTAC
* * * * *
22403234 AAGCCCTAAAGCTACAGCTGGGAGCTTCAACTTGCACTAACTATTTTGGAGGCTGCGGTTTTGAA
1 GAGCCTTAAAGCTACAACTGGGAGCTTCAGCTTGCACTAACTATTTTGGAGGCTGCGGTGTTGAA
22403299 CCTAC
66 CCTAC
* * *
22403304 GAGCCTTAAAGCTACAGCTGGGAGCTTCAGCTTGCACTAACTGTTTTGGAGGCTGTGGTGTTGAA
1 GAGCCTTAAAGCTACAACTGGGAGCTTCAGCTTGCACTAACTATTTTGGAGGCTGCGGTGTTGAA
*
22403369 CCTAT
66 CCTAC
* * *
22403374 GAGCCTT-TAGATCACAACTGGTG-GCCTT-AGCTTTCACTAACTATTTT
1 GAGCCTTAAAGCT-ACAACTGG-GAG-CTTCAGCTTGCACTAACTATTTT
22403421 CGGGGATTGT
Statistics
Matches: 219, Mismatches: 34, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
69 3 0.01
70 210 0.96
71 6 0.03
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (70 bp):
GAGCCTTAAAGCTACAACTGGGAGCTTCAGCTTGCACTAACTATTTTGGAGGCTGCGGTGTTGAA
CCTAC
Found at i:22403511 original size:71 final size:71
Alignment explanation
Indices: 22403397--22403846 Score: 395
Period size: 71 Copynumber: 6.4 Consensus size: 71
22403387 ACAACTGGTG
* * * * * * * *
22403397 GCCTTAGCTTTCACTAACTATTTTCG-GGGATTGTGGTACTGAACCTACGGGCCCTAAGATCACA
1 GCCTTAGCTCTCTCTAACTATTTTTGAGGG-TTGTAGAATTGAACCTGCGAGCCCTAAGATCACA
*
22403461 GCTGGGA
65 GTTGGGA
** * * *
22403468 GCCTTAGCTCTAGCTAACTATTTTTAAGGGTTGTAAAATTGAACTTGCGAGCCCTAAGATCACAG
1 GCCTTAGCTCTCTCTAACTATTTTTGAGGGTTGTAGAATTGAACCTGCGAGCCCTAAGATCACAG
22403533 TTGGGA
66 TTGGGA
* *
22403539 GCCTTAGCTCTCTCTAACTATTTTTGAGGGTTGTAGAATTGAACTTGTGAGCCCTAAGATCACAG
1 GCCTTAGCTCTCTCTAACTATTTTTGAGGGTTGTAGAATTGAACCTGCGAGCCCTAAGATCACAG
*
22403604 TTAGGA
66 TTGGGA
* * * * * *** * *
22403610 GCCTTAGCACTCTCTAACTGTTTTTGAGGGGT-TACGGTATTGAATCAATGAGACCTAAGATCAT
1 GCCTTAGCTCTCTCTAACTATTTTTGAGGGTTGTA--GAATTGAACCTGCGAGCCCTAAGATCAC
**
22403674 AACTGGGA
64 AGTTGGGA
* * * * ** *
22403682 GCTTTAGCTCTCTTTAACTATTTTTGGGGGCTGCGGTATTGAACCTGCGAGCCCTAAGATCACAG
1 GCCTTAGCTCTCTCTAACTATTTTTGAGGGTTGTAGAATTGAACCTGCGAGCCCTAAGATCACAG
22403747 TTGGGA
66 TTGGGA
* * * ** * * * * * * *
22403753 GCCTTAG--CTCTCTAACTATTGTTGGGGGCTGCGGTATTAAACTTGTGAGCTCTAAGATCATAA
1 GCCTTAGCTCTCTCTAACTATTTTTGAGGGTTGTAGAATTGAACCTGCGAGCCCTAAGATCACAG
*
22403816 CTGGGA
66 TTGGGA
*
22403822 GTCTTAGCTCTCTCTAACTATTTTT
1 GCCTTAGCTCTCTCTAACTATTTTT
22403847 TTGAGAGAGG
Statistics
Matches: 313, Mismatches: 60, Indels: 12
0.81 0.16 0.03
Matches are distributed among these distances:
69 59 0.19
70 2 0.01
71 197 0.63
72 55 0.18
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (71 bp):
GCCTTAGCTCTCTCTAACTATTTTTGAGGGTTGTAGAATTGAACCTGCGAGCCCTAAGATCACAG
TTGGGA
Found at i:22403704 original size:143 final size:139
Alignment explanation
Indices: 22403520--22403846 Score: 397
Period size: 143 Copynumber: 2.3 Consensus size: 139
22403510 ACTTGCGAGC
* ** * * * *
22403520 CCTAAGATCACAGTTGGGAGCCTTAGCTCTCTCTAACTATTTTTGAGGGTTGTAGAATTGAACTT
1 CCTAAGATCATAACTGGGAGCTTTAGCTCTCTCTAACTATTTTTGAGGGCTGCAGAATTGAACCT
* * * *
22403585 GTGAGCCCTAAGATCACAGTTAGGAGCCTTAGCACTCTCTAACTGTTTTTGAGGGGTTACGGTAT
66 GCGAGCCCTAAGATCACAGTTAGGAGCCTTAG--CTCTCTAACTATTGTTG-GGGGCTACGGTAT
*
22403650 TGAATCAATGAGA-
128 T-AAAC-ATGAGAG
* * * *
22403663 CCTAAGATCATAACTGGGAGCTTTAGCTCTCTTTAACTATTTTTGGGGGCTGCGGTATTGAACCT
1 CCTAAGATCATAACTGGGAGCTTTAGCTCTCTCTAACTATTTTTGAGGGCTGCAGAATTGAACCT
* *
22403728 GCGAGCCCTAAGATCACAGTTGGGAGCCTTAGCTCTCTAACTATTGTTGGGGGCTGCGGTATTAA
66 GCGAGCCCTAAGATCACAGTTAGGAGCCTTAGCTCTCTAACTATTGTTGGGGGCTACGGTATTAA
* *
22403793 ACTTGTGAG
131 ACATGAGAG
22403802 CTCTAAGATCATAACTGGGAG-TCTTAGCTCTCTCTAACTATTTTT
1 C-CTAAGATCATAACTGGGAGCT-TTAGCTCTCTCTAACTATTTTT
22403847 TTGAGAGAGG
Statistics
Matches: 160, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
138 4 0.03
139 5 0.03
140 52 0.32
141 15 0.09
143 84 0.52
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.33
Consensus pattern (139 bp):
CCTAAGATCATAACTGGGAGCTTTAGCTCTCTCTAACTATTTTTGAGGGCTGCAGAATTGAACCT
GCGAGCCCTAAGATCACAGTTAGGAGCCTTAGCTCTCTAACTATTGTTGGGGGCTACGGTATTAA
ACATGAGAG
Found at i:22420294 original size:18 final size:17
Alignment explanation
Indices: 22420261--22420298 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
22420251 TTAAATGTAA
22420261 TTTAAATACAACTTTTT
1 TTTAAATACAACTTTTT
22420278 TTTAATATACGAA-TTTTT
1 TTTAA-ATAC-AACTTTTT
22420296 TTT
1 TTT
22420299 TGAATTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
18 12 0.63
19 2 0.11
ACGTcount: A:0.32, C:0.08, G:0.03, T:0.58
Consensus pattern (17 bp):
TTTAAATACAACTTTTT
Found at i:22429021 original size:50 final size:50
Alignment explanation
Indices: 22428918--22429110 Score: 161
Period size: 50 Copynumber: 3.7 Consensus size: 50
22428908 TTTCTTGTTC
* * * * * * ** * *
22428918 TGCCAATGTCATATCCTAGATATGGTCTTACATGAGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCAG
* * * *
22428968 TGCCCATGCCATGTTCCAAACATGGTCTTACGGGGGACCTCTCATCTCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCAG
* * * *
22429018 TGCCAACGCCATGTCCCAGACGTGGTCTTACATGGGACCTATCATAACCTCAATG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCAT---CTC-A-G
*
22429073 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA
22429111 TTTCTTTATG
Statistics
Matches: 113, Mismatches: 24, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
50 73 0.65
53 3 0.03
54 1 0.01
55 1 0.01
56 35 0.31
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCAG
Found at i:22436162 original size:50 final size:48
Alignment explanation
Indices: 22436046--22436234 Score: 200
Period size: 50 Copynumber: 3.8 Consensus size: 48
22436036 GATAATAACA
* * *
22436046 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCTTGTAC-
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT-TTTCATAT-CG
* * * *
22436095 AGCCAATGCCATCTCCCATATATGGTCTTACATGGGAGTTTTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-TTTTCATATC-G
** ** *
22436145 TGCCAATGCCATGTCCCAGACATGGTCTTACGGGGGACCATTCATCTCG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-TTTTCATATCG
*
22436194 TTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATTT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATTT
22436235 CTTTATCCAA
Statistics
Matches: 114, Mismatches: 22, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
48 1 0.01
49 40 0.35
50 73 0.64
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.29
Consensus pattern (48 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATTTTCATATCG
Found at i:22442128 original size:30 final size:30
Alignment explanation
Indices: 22442087--22442164 Score: 129
Period size: 30 Copynumber: 2.6 Consensus size: 30
22442077 TTATTGAAAT
* *
22442087 GTGGAAACCTTTGTGGTTGTTCTCTGATAA
1 GTGGAAGCCTTTGTGGCTGTTCTCTGATAA
22442117 GTGGAAGCCTTTGTGGCTGTTCTCTGATAA
1 GTGGAAGCCTTTGTGGCTGTTCTCTGATAA
*
22442147 GTGGAAGGCTTTGTGGCT
1 GTGGAAGCCTTTGTGGCT
22442165 AATCTCTTAT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.17, C:0.14, G:0.32, T:0.37
Consensus pattern (30 bp):
GTGGAAGCCTTTGTGGCTGTTCTCTGATAA
Found at i:22442247 original size:29 final size:29
Alignment explanation
Indices: 22442157--22442248 Score: 114
Period size: 29 Copynumber: 3.2 Consensus size: 29
22442147 GTGGAAGGCT
*
22442157 TTGTGGC-TAATCTCTTATATGTGAGCCC
1 TTGTGGCATAATCTATTATATGTGAGCCC
** *
22442185 TTGTCACATAATCTGTTATATGTGAGCCC
1 TTGTGGCATAATCTATTATATGTGAGCCC
** *
22442214 TTGTGGTGTAATCTATTATATGTGAGCCA
1 TTGTGGCATAATCTATTATATGTGAGCCC
22442243 TTGTGG
1 TTGTGG
22442249 AAGAATATGT
Statistics
Matches: 54, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
28 5 0.09
29 49 0.91
ACGTcount: A:0.21, C:0.16, G:0.23, T:0.40
Consensus pattern (29 bp):
TTGTGGCATAATCTATTATATGTGAGCCC
Found at i:22445296 original size:37 final size:37
Alignment explanation
Indices: 22445246--22445324 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
22445236 ATATTATGAA
* * *
22445246 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
22445283 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
22445320 GTCTT
1 GTCTT
22445325 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:22445579 original size:47 final size:47
Alignment explanation
Indices: 22445442--22445894 Score: 817
Period size: 47 Copynumber: 9.7 Consensus size: 47
22445432 GCCCTTCGGG
* *
22445442 ACTTATCACATTCATCACATTGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
22445492 ACTTTCACATTCATCACA---GCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
22445536 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
22445583 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
22445630 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
22445677 ACTTTCACATTCATCACATCGGCCATTAGG-CTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
22445723 ACTTTCACATTCATCACATCGGCCATTAGG-CTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
22445769 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
22445816 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
22445863 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
22445895 ATACTATCAT
Statistics
Matches: 396, Mismatches: 3, Indels: 11
0.97 0.01 0.03
Matches are distributed among these distances:
44 26 0.07
46 109 0.28
47 243 0.61
49 14 0.04
50 4 0.01
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:22445855 original size:233 final size:234
Alignment explanation
Indices: 22445442--22445894 Score: 815
Period size: 233 Copynumber: 1.9 Consensus size: 234
22445432 GCCCTTCGGG
*
22445442 ACTTATCACATTCATCACATTGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATC
1 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACA-ATATATACACTTTCACATTCATC
22445507 ACAGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
65 ACAGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
*
22445572 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
130 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATACACTTTCA
22445637 CATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
195 CATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
22445677 ACTT-TCACATTCATCACATCGGCCATTAGG-CTTATCAC-ATATATACACTTTCACATTCATCA
1 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATACACTTTCACATTCATCA
22445739 CATCGGCCATTAGG-CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
66 CA---GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
22445803 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATACACTTT
128 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATACACTTT
22445868 CACATTCATCACATCGGCCATTAGGCC
193 CACATTCATCACATCGGCCATTAGGCC
22445895 ATACTATCAT
Statistics
Matches: 212, Mismatches: 3, Indels: 8
0.95 0.01 0.04
Matches are distributed among these distances:
231 26 0.12
233 148 0.70
234 34 0.16
235 4 0.02
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (234 bp):
ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATACACTTTCACATTCATCA
CAGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATACACTTTCAC
ATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:22445879 original size:25 final size:25
Alignment explanation
Indices: 22445803--22445881 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
22445793 ATTAGGCCTT
22445803 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
**** ***
22445828 ATCACAT-CGGCCA-TTAGGCATT-
1 ATCACATATATACACTTTCACATTC
22445850 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
22445875 ATCACAT
1 ATCACAT
22445882 CGGCCATTAG
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.34, C:0.28, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:22449798 original size:40 final size:41
Alignment explanation
Indices: 22449743--22449934 Score: 248
Period size: 40 Copynumber: 4.8 Consensus size: 41
22449733 ATTTGAATGA
* * *
22449743 GATCCGGGCTAAGTCCCGAAGGCACTTGTGCTAG-TGATTT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATAT
* *
22449783 GATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATTT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATAT
*
22449823 GATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATAT
* * *
22449864 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATAT
* * *
22449904 G-CCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 GATCCGGGCTAAGACCCGAAGGCATTTGTGCT
22449935 TGTGGTAATA
Statistics
Matches: 139, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
40 134 0.96
41 5 0.04
ACGTcount: A:0.22, C:0.22, G:0.31, T:0.25
Consensus pattern (41 bp):
GATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATAT
Found at i:22452053 original size:40 final size:40
Alignment explanation
Indices: 22451767--22452107 Score: 366
Period size: 40 Copynumber: 8.5 Consensus size: 40
22451757 AGCATGATTA
* * * *
22451767 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* ** * *
22451807 CTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
*
22451847 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* * * *
22451887 CTCCTCGGGACTTAGCCCGGATATATCACTAGAATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* *
22451927 CTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* * *
22451967 CTCTTCAGGACTTAGCCCGGATACATCGCTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
** * * *
22452007 CTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATG
1 CTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAATG
* ** *
22452048 C-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAG
1 CTCTTCGGGA-CTTAGCCCGGATA-CATCAC-TAGCACGAATG
22452088 C-CTTCGGGACTTAGCCCGGA
1 CTCTTCGGGACTTAGCCCGGA
22452108 CATCATTCGA
Statistics
Matches: 255, Mismatches: 41, Indels: 10
0.83 0.13 0.03
Matches are distributed among these distances:
39 3 0.01
40 233 0.91
41 19 0.07
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
Found at i:22452452 original size:29 final size:29
Alignment explanation
Indices: 22452413--22452491 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
22452403 CTTAATAATC
*
22452413 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
22452443 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
22452472 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
22452492 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:22459821 original size:36 final size:37
Alignment explanation
Indices: 22459781--22459853 Score: 85
Period size: 37 Copynumber: 2.0 Consensus size: 37
22459771 TCAAAAACCT
*
22459781 GCAAAGCAAACACTCAA-CACTCAAAAAGAAAAATTA
1 GCAAACCAAACACTCAATCACTCAAAAAGAAAAATTA
** ** *
22459817 GCAAACCTTACTGTTAATCACTCAAAAAGAAAAATTA
1 GCAAACCAAACACTCAATCACTCAAAAAGAAAAATTA
22459854 AATTCTCAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
36 11 0.37
37 19 0.63
ACGTcount: A:0.53, C:0.21, G:0.08, T:0.18
Consensus pattern (37 bp):
GCAAACCAAACACTCAATCACTCAAAAAGAAAAATTA
Found at i:22464001 original size:29 final size:28
Alignment explanation
Indices: 22463965--22464042 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
22463955 TCATGAGATT
22463965 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
22463995 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
22464022 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
22464043 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:22464309 original size:173 final size:174
Alignment explanation
Indices: 22463995--22464321 Score: 575
Period size: 173 Copynumber: 1.9 Consensus size: 174
22463985 AAATTGTACA
* *
22463995 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* *
22464060 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
22464125 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
22464169 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
22464234 TGTGC-AACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
22464298 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
22464322 ACCTTGAGTT
Statistics
Matches: 145, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
173 81 0.56
174 64 0.44
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:22475878 original size:29 final size:28
Alignment explanation
Indices: 22475842--22475919 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
22475832 TCATGAGATT
22475842 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
22475872 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
22475899 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
22475920 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:22476186 original size:173 final size:174
Alignment explanation
Indices: 22475872--22476198 Score: 575
Period size: 173 Copynumber: 1.9 Consensus size: 174
22475862 AAATTGTACA
* *
22475872 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* *
22475937 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
22476002 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
22476046 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
22476111 TGTGC-AACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
22476175 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
22476199 ACCTTGAGTT
Statistics
Matches: 145, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
173 81 0.56
174 64 0.44
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:22483292 original size:14 final size:14
Alignment explanation
Indices: 22483273--22483302 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
22483263 CTCTCCTCCA
*
22483273 TTCCCTTTTTTGTT
1 TTCCCTTTTTTCTT
22483287 TTCCCTTTTTTCTT
1 TTCCCTTTTTTCTT
22483301 TT
1 TT
22483303 TCATTCCCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.00, C:0.23, G:0.03, T:0.73
Consensus pattern (14 bp):
TTCCCTTTTTTCTT
Found at i:22484935 original size:30 final size:30
Alignment explanation
Indices: 22484901--22485018 Score: 173
Period size: 30 Copynumber: 3.9 Consensus size: 30
22484891 AATCAGTCTA
* *
22484901 GGCCATAGCCCTATACAGTAGCAGTGTGTG
1 GGCCATAGCCCAATACAGTAACAGTGTGTG
*
22484931 GGCCATAGCCCAATACAGTAACAGAGTGTG
1 GGCCATAGCCCAATACAGTAACAGTGTGTG
* *
22484961 GGCCTTAGCCCAATACAGTAACAGTCTGTG
1 GGCCATAGCCCAATACAGTAACAGTGTGTG
* *
22484991 GGCCTTAGTCCAATACAGTAACAGTGTG
1 GGCCATAGCCCAATACAGTAACAGTGTG
22485019 GCCTTAGCCC
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 80 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (30 bp):
GGCCATAGCCCAATACAGTAACAGTGTGTG
Found at i:22485180 original size:26 final size:26
Alignment explanation
Indices: 22485151--22485203 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22485141 CACCAATATT
* * *
22485151 GTAGTAAAGCTGCCAGTATCAGTAAC
1 GTAGCAAAGCTACCAGTAACAGTAAC
*
22485177 GTAGCAAAGTTACCAGTAACAGTAAC
1 GTAGCAAAGCTACCAGTAACAGTAAC
22485203 G
1 G
22485204 GGGCAGAGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.21
Consensus pattern (26 bp):
GTAGCAAAGCTACCAGTAACAGTAAC
Found at i:22485213 original size:26 final size:26
Alignment explanation
Indices: 22485163--22485213 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
22485153 AGTAAAGCTG
* *
22485163 CCAGTATCAGTAACGTAGCAAAGTTA
1 CCAGTAACAGTAACGGAGCAAAGTTA
* *
22485189 CCAGTAACAGTAACGGGGCAGAGTT
1 CCAGTAACAGTAACGGAGCAAAGTT
22485214 GCTAGTCTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (26 bp):
CCAGTAACAGTAACGGAGCAAAGTTA
Found at i:22485477 original size:27 final size:26
Alignment explanation
Indices: 22485447--22485612 Score: 183
Period size: 27 Copynumber: 6.2 Consensus size: 26
22485437 TATAACGGTC
* *
22485447 ATTTTACCCTTCGAGGGTATTTCAAAA
1 ATTTTACCCTTCG-GGGTATTTCGATA
22485474 ATTTTACCCTTCGGGGGTATTTC-AGTA
1 ATTTTACCCTTC-GGGGTATTTCGA-TA
*
22485501 ATTTTACCTTTCGAGGGTATTTCGATA
1 ATTTTACCCTTCG-GGGTATTTCGATA
* * *
22485528 ATTTTACCCTTTGGGGGTATTTTGGTA
1 ATTTTACCC-TTCGGGGTATTTCGATA
*
22485555 A-TTTACCCTTTGGGAGTATTTCGATA
1 ATTTTACCCTTCGGG-GTATTTCGATA
*
22485581 ATTTTACCCTTCGGGGATATTTCGGTA
1 ATTTTACCCTTCGGGG-TATTTCGATA
22485608 ATTTT
1 ATTTT
22485613 CCCACGAATC
Statistics
Matches: 120, Mismatches: 11, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
25 5 0.04
26 20 0.17
27 90 0.75
28 5 0.04
ACGTcount: A:0.21, C:0.16, G:0.20, T:0.43
Consensus pattern (26 bp):
ATTTTACCCTTCGGGGTATTTCGATA
Found at i:22485516 original size:54 final size:54
Alignment explanation
Indices: 22485442--22485612 Score: 231
Period size: 54 Copynumber: 3.2 Consensus size: 54
22485432 TAGGGTATAA
* * * *
22485442 CGGTCATTTTACCCTTCGAGGGTATTTCAAAAATTTTACCCTTCGGGGGTATTT
1 CGGTAATTTTACCTTTCGAGGGTATTTCGATAATTTTACCCTTCGGGGGTATTT
* *
22485496 CAGTAATTTTACCTTTCGAGGGTATTTCGATAATTTTACCCTTTGGGGGTATTT
1 CGGTAATTTTACCTTTCGAGGGTATTTCGATAATTTTACCCTTCGGGGGTATTT
* *
22485550 TGGTAA-TTTACCCTTT-G-GGAGTATTTCGATAATTTTACCCTTCGGGGATATTT
1 CGGTAATTTTA-CCTTTCGAGG-GTATTTCGATAATTTTACCCTTCGGGGGTATTT
22485603 CGGTAATTTT
1 CGGTAATTTT
22485613 CCCACGAATC
Statistics
Matches: 103, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
52 2 0.02
53 41 0.40
54 60 0.58
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.43
Consensus pattern (54 bp):
CGGTAATTTTACCTTTCGAGGGTATTTCGATAATTTTACCCTTCGGGGGTATTT
Found at i:22485583 original size:53 final size:53
Alignment explanation
Indices: 22485449--22485611 Score: 222
Period size: 53 Copynumber: 3.1 Consensus size: 53
22485439 TAACGGTCAT
* * * *
22485449 TTTACCCTTCGAGGGTATTTCAAAAATTTTACCCTTCGGGGGTATTTCAGTAA
1 TTTACCCTTTGAGGGTATTTCGATAATTTTACCCTTCGGGGGTATTTCGGTAA
* *
22485502 TTTTA-CCTTTCGAGGGTATTTCGATAATTTTACCCTTTGGGGGTATTTTGGTAA
1 -TTTACCCTTT-GAGGGTATTTCGATAATTTTACCCTTCGGGGGTATTTCGGTAA
*
22485556 TTTACCCTTTG-GGAGTATTTCGATAATTTTACCCTTCGGGGATATTTCGGTAA
1 TTTACCCTTTGAGG-GTATTTCGATAATTTTACCCTTCGGGGGTATTTCGGTAA
22485609 TTT
1 TTT
22485612 TCCCACGAAT
Statistics
Matches: 97, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
52 2 0.02
53 48 0.49
54 47 0.48
ACGTcount: A:0.21, C:0.16, G:0.20, T:0.43
Consensus pattern (53 bp):
TTTACCCTTTGAGGGTATTTCGATAATTTTACCCTTCGGGGGTATTTCGGTAA
Found at i:22491686 original size:27 final size:26
Alignment explanation
Indices: 22491656--22491706 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
22491646 GTAAAGTATA
*
22491656 TGTGGCAAAGCCACCGGTAACAGTAAC
1 TGTGGCAAAGCCACCAG-AACAGTAAC
*
22491683 TGTGGCAGAGCCACCAGAACAGTA
1 TGTGGCAAAGCCACCAGAACAGTA
22491707 CTTCCTCCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.33, C:0.25, G:0.27, T:0.14
Consensus pattern (26 bp):
TGTGGCAAAGCCACCAGAACAGTAAC
Found at i:22491905 original size:54 final size:54
Alignment explanation
Indices: 22491837--22491949 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 54
22491827 ACCCTAACGG
* * * * *
22491837 GGGTATTACAATAATTTTAACTATTGGGGGTATTTCGATAATTTTACCCATTAA
1 GGGTAATACAATAATTTTAACCATCGAGGGTATTTCAATAATTTTACCCATTAA
* * * * *
22491891 GGGTAATACGATAATTTTACCCATCGAGGTTATTTTAATAATTTTACCCATTAG
1 GGGTAATACAATAATTTTAACCATCGAGGGTATTTCAATAATTTTACCCATTAA
22491945 GGGTA
1 GGGTA
22491950 TTTTGGTAAT
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.39
Consensus pattern (54 bp):
GGGTAATACAATAATTTTAACCATCGAGGGTATTTCAATAATTTTACCCATTAA
Found at i:22491959 original size:27 final size:27
Alignment explanation
Indices: 22491836--22491961 Score: 110
Period size: 27 Copynumber: 4.7 Consensus size: 27
22491826 TACCCTAACG
* * * * *
22491836 GGGGTATTACAATAATTTTAACTATTG
1 GGGGTATTTCGATAATTTTACCCATTA
22491863 GGGGTATTTCGATAATTTTACCCATTA
1 GGGGTATTTCGATAATTTTACCCATTA
* * * *
22491890 AGGGTAATACGATAATTTTACCCA-TC
1 GGGGTATTTCGATAATTTTACCCATTA
* **
22491916 GAGGTTATTTTAATAATTTTACCCATTA
1 G-GGGTATTTCGATAATTTTACCCATTA
* *
22491944 GGGGTATTTTGGTAATTT
1 GGGGTATTTCGATAATTT
22491962 GCCCATAAAT
Statistics
Matches: 78, Mismatches: 19, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
26 1 0.01
27 75 0.96
28 2 0.03
ACGTcount: A:0.29, C:0.11, G:0.18, T:0.41
Consensus pattern (27 bp):
GGGGTATTTCGATAATTTTACCCATTA
Found at i:22493712 original size:34 final size:34
Alignment explanation
Indices: 22493639--22493734 Score: 111
Period size: 34 Copynumber: 2.8 Consensus size: 34
22493629 TTATTCAGCT
* * * * *
22493639 TAAGGCTATTCGTCCACATCAATAGAAATAGCAA
1 TAAGGCTGTTCGTGCACATCAATAGACACAACAA
*
22493673 CAAGGCTGTTCGTGCACATCAATAGACACAACAA
1 TAAGGCTGTTCGTGCACATCAATAGACACAACAA
* * *
22493707 TAAGGCTGTTCGGGCACCTCAATGGACA
1 TAAGGCTGTTCGTGCACATCAATAGACA
22493735 ACCAATCATT
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 52 1.00
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.21
Consensus pattern (34 bp):
TAAGGCTGTTCGTGCACATCAATAGACACAACAA
Done.