Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 81 of 196
Found at i:23299208 original size:298 final size:296
Alignment explanation
Indices: 23298558--23302701 Score: 1433
Period size: 298 Copynumber: 13.9 Consensus size: 296
23298548 ATTACCCGGC
* * * ** * * *
23298558 CCTAGTTTGCCGATGGCGTCCGAGGCTCCCGCACATCCGAGTGCC-TGGTACCGATGGTGCCCGA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCAA
* * *
23298622 GGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGTTCCCGCACATCCAAGAACC
66 GGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACC
* * * ** * *
23298687 ACGGT-GTCGATGGTGCTCGAGGCTCCCCCACGACCAAGGGCCTAGGATGCCGACATTGT-C-CG
131 AAGGTCCT-GATGGTGC-CGAGGCTCCCACACGACCAAGGGCCTAGTTTGCC-A-ATGGTGCTTG
*
23298749 AGGCTCCCGCACAT-CATAGCACCGAGGTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
192 AGGCTCCCGCACATCCA-AGCACCGAGGTACCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGC
* * * * **
23298813 CTAGTTTGCCGATGGTGTCCGACGCTCC-CGCACATCCGACCG
256 CTAGTTTGCCGATGGTGCCCGAGGC-CCTCACACA-CCAAAGG
* * * * * * *
23298855 CCAAGG-TGCCGATAGTGCCCGAGGCTCTCGCACGA-CCAATG-GCCTAGGTTGTCGATGGTGCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAA-GCACCAAGG-TGCCGATGGTGCC
* * * ** * *
23298917 CAAGGCTCCCGCACGACCAAAGGCCTAGTTTCCCGATGGTGTCTAAGGCTCTCGTACATCCAAGC
63 CAAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGC
** * * * *
23298982 ACCTTGGTCCTGATGGTGGCCGAGGCTCTCGCACGACCAAGGGCCGATTTTGCCAATGGTGCTTG
128 ACCAAGGTCCTGATGGT-GCCGAGGCTCCCACACGACCAAGGGCCTAGTTTGCCAATGGTGCTTG
* * *
23299047 AGGCTCCCGCACATCCAAGTACCGAGGTACCGATGGTGCCCGAGGCTCTCGTACGACCAAGGGCA
192 AGGCTCCCGCACATCCAAGCACCGAGGTACCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCC
* *
23299112 TAGTTTGCCGATGGTGCCCAAGGCCCTCACACGACCAAGGG
257 TAGTTTGCCGATGGTGCCCGAGGCCCTCACAC-ACCAAAGG
* * * *
23299153 CCTAGGTTGCCGATGGTGTCCGAGGTTCCCGCACATCCAAGCACCAAGGTGTCGATGGTGCTCGA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCAA
* ***
23299218 GGCTCCCGCACGACCAAGGGCCTAGGATGCCGACATTGTCCGAGGCTCCCGCACAT-CATAGCAC
66 GGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCA-AGCAC
* * * * *
23299282 CGAGGTGCC-AATGGTGCCTGAGGCTCCCATACGACCAAGGGCCTAGTTTGTCGATGGTG-TTCG
130 CAAGGT-CCTGATGGTGCC-GAGGCTCCCACACGACCAAGGGCCTAGTTTGCCAATGGTGCTT-G
** * * * * *
23299345 ACGG-TCCCGCACATCTGAGCGCCCAGCTGCCGATGGTGCCCGAGGCTCTTGCACGACCAAGGGG
192 A-GGCTCCCGCACATCCAAGCACCGAGGTACCGATGGTGCCCGAGGCTCTCGCACGACCAA-GGG
* * * * *
23299409 CCTAGGTTGCCGATGATTCCTGAGGTTCCTGCACA-ACCAAAGG
255 CCTAGTTTGCCGATGGTGCCCGAGG-CCCT-CACACACCAAAGG
** * * * * * * *
23299452 TATAGTTTGTCGATGGTGTCCGAGGTTTCCGCACATCCAAGCACCAAGGTCCCAATGGTGGCCGA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGT-GCCCA
* * * ** * * * ** *
23299517 A-GCTCTCGTACGACCAATGGCCTATTTTTCCGATGGTGCCCGTGGCTCCTACACGA-CCAAG-G
65 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCA
* * ** ** * ** *
23299579 CCTAGTTTACC-GATTATGCCCGAGGCTTTCGCAC-ATCCAAGCACCTAGGTTT-CCGATGGTG-
129 CCAAG-GT-CCTGATGGTG-CCGAGGCTCCCACACGA-CCAAGGGCCTA-GTTTGCCAATGGTGC
* * * * *
23299640 TCCGAGGTTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCT-TCAGCACGACCAA
189 T-TGAGGCTCCCGCACATCCAAGCACCGAGGTACCGATGGTGCCCGAGGCTCTC-GCACGACCAA
* ** *** * * * * *
23299704 GGGCCGAGGATGCCGACATTGTCCGATGCTCCT-GCACATC-AAGTA
252 GGGCCTAGTTTGCCGATGGTGCCCGAGGC-CCTCACACACCAAAG-G
* * * * * * ** *
23299749 CCGAGG-TGCCTATGGTGCCCGAGGCTCCCGCACGA-CCAAAG-GCCTAGTTTGCTAATGGT-TC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCC-AAGCACCAAG-GTGCCGATGGTGCC
* * * ** * * * ** *
23299810 CGACGCTCCCACAC-ATCTGAGCGTCC-AGG-TGCCGATGGTGCCCGAGACTCTTGTACGA-CCA
63 CAAGGCTCCCGCACGA-CCAAG-GGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCA
* ** * ** * *
23299871 AG-AGCCTAGGTTGTCGATGATGCTCGAGGCTCCCGTACGACTAAGGGCCTAGTTTGCCGATGGT
125 AGCA-CCAAGGTCCT-GATGGTGC-CGAGGCTCCCACACGACCAAGGGCCTAGTTTGCCAATGGT
* * * * * *
23299935 G-TCCGAGGCTCCCACACATACAAGCACCTAGGTCCCGACGGTAG-CCGAGGCTCTCGCACGACC
187 GCT-TGAGGCTCCCGCACATCCAAGCACCGAGGTACCGATGGT-GCCCGAGGCTCTCGCACGACC
* * ** * * * *
23299998 AAAGGCCTATTTTGTTGATGGTGCCCAAGGATTCCGCACA-TCC-AA-G
250 AAGGGCCTAGTTTGCCGATGGTGCCCGAGG--CCCTCACACACCAAAGG
* * * * * * * *
23300044 CATTGAGG-TACCGAAT-GTGCCCGAGGCT-TCACACGA-CCAAAG-GCCTAGTTTGCCGATGGT
1 C-CT-AGGTTGCCG-ATGGTGTCCGAGGCTCCCGCAC-ATCC-AAGCACCAAG-GTGCCGATGGT
* *** * * * * * **
23300104 ACTTGAGGCTCTCGCACGACCAAGGGCCTAGGTTTCTGATGGTATCCGAGGTTCCCATACATCCA
60 GCCCAAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCA
* * ** *
23300169 AGCACCAAGGT-GTCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGATGCCGACATTG
125 AGCACCAAGGTCCT-GATGGTGC-CGAGGCTCCCACACGACCAAGGGCCTAGTTTGCC-A-ATGG
* * * * * * * *
23300233 T-C-CGAGGCTCCCACACAT-CATAGCACTGAGGTGCCGATGGTGCCCGAGGCTCCCACAAGTCC
186 TGCTTGAGGCTCCCGCACATCCA-AGCACCGAGGTACCGATGGTGCCCGAGGCTCTCGCACGACC
* ** * *
23300295 AAGGGCCTAGTTTGCCGATGGTGTCCGACGTTCCTGCACA-TCC-GAGCG
250 AAGGGCCTAGTTTGCCGATGGTGCCCGA-GGCCCT-CACACACCAAAG-G
* * * ** * * *
23300343 CCCAGG-TGCCGATGGTG-CCTGAGGCTCTCGCACAACCAAGGGCCTAGGTTACCGATGGTGCCT
1 CCTAGGTTGCCGATGGTGTCC-GAGGCTCCCGCACATCCAAGCACCAAGG-TGCCGATGGTGCCC
* * * *
23300406 GAGGCTCTCGCACGACCAAGGGCCTAGTTTGTCGATGGTGTCC-AGGGCTCCCGCACATCCAAGC
64 AAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGA-GGCTCCCGCACATCCAAGC
* * * * * * * **
23300470 ACCTAGGTCCCGATAGTGGCCGAGGCTCTCACACAACCAAGGGCCTATTTTGCCGATGGTGCCCG
128 ACCAAGGTCCTGATGGT-GCCGAGGCTCCCACACGACCAAGGGCCTAGTTTGCCAATGGTGCTTG
* * * * *
23300535 AGGCACCCGCACATCGAAGCACCGAGGTACTGATGGTGCCCGAGGCTCCCGTACGACCAAGGGCC
192 AGGCTCCCGCACATCCAAGCACCGAGGTACCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCC
** * * * *
23300600 TAGTTTGCCGATGGTGTACGAGGCTCC-CGCTCATCC-GAGCA
257 TAGTTTGCCGATGGTGCCCGAGGC-CCTCACACA-CCAAAG-G
* * * ** * *
23300641 CCTAGG-TGTCGATGGTGCCCGAGGCTCTCGCACGAT-CAAGGGCCTAGGTTGCCGATGGTGTCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCC
* * ** * * * *
23300704 GAGGTTCCCGCAC-ATCCAAGCACCAAGG-TGTCGATGGTGAT-CGAGGCTCTCGCACGA-CTAA
64 AAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTG-TCCGAGGCTCCCGCAC-ATCCAA
* * * * * * ** * *
23300765 TG-GCCTAGGATGCC-GACATTGT-CTGAGGCTCCCGCAC-ATCATAGCACCGAG-GTGCCAATG
126 -GCACCAAGG-T-CCTG--ATGGTGCCGAGGCTCCCACACGACCA-AGGGCCTAGTTTGCCAATG
** * * ** * * * * * *
23300825 GTGCCCGAGGCTCTCACACGA-CCAAGGGCCTAGTTTGCCGATGGTGTCCGACGCTCCCGCAC-A
185 GTGCTTGAGGCTCCCGCAC-ATCCAAGCACCGAG-GTACCGATGGTGCCCGAGGCTCTCGCACGA
** * * * * * *
23300888 TCTGAGCGCCCAG-CTGCCGATGGTGCCCGAGGCTCTTACACGACCAAGGG
248 -CCAAGGGCCTAGTTTGCCGATGGTGCCCGAGGCCCTCACAC-ACCAAAGG
* * * * ** * * *
23300938 CCTAGGTTGCCGATGATG-CCTAAGGCTCCTGCACAACCAAG-GGCATAGTTTGTCGATGGTGTC
1 CCTAGGTTGCCGATGGTGTCC-GAGGCTCCCGCACATCCAAGCACCA-AG-GTGCCGATGGTGCC
* * ** * * * * * * *
23301001 CGAGGCTTCCGCAC-ATCCAAGCACCAAGG-TCCCAATGGTGGCCGAAGCTCTCGTACGA-CCAA
63 CAAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAA
* *** * ** * *
23301063 TGGC-CTATTTTGCC-GATGGTGCCCGTGGCTCCTGCACGACCAAGGGCCTAGTTTGCCGATTGT
126 --GCACCAAGGT-CCTGATGGTG-CCGAGGCTCCCACACGACCAAGGGCCTAGTTTGCCAATGGT
* ** * * * * * *
23301126 GCCTGAGGCTTTCGCACATCCAAGCACCTAGGTTTCCGATGGTGTCTGAGGTTCCCGCAC-ATCC
187 GCTTGAGGCTCCCGCACATCCAAGCACCGAGG-TACCGATGGTGCCCGAGGCTCTCGCACGA-CC
* * * * * * *
23301190 AAGCGCCAAG-GTGCAGATGGTGCTCGAGG-CTTCAGCACGACCAAGGG
250 AAGGGCCTAGTTTGCCGATGGTGCCCGAGGCCCTCA-CAC-ACCAAAGG
* * *** * * * * * *
23301237 CCGAGGATGCCGACATTGTCCGATGCTCCTGCACAT-CATAGCACCGAGGTGCCTATGGTGCTCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGATGGTGCCCA
* ** * ** *
23301301 AGGCTCCCGCACGACCAAGGGCCTAGTTTGTTGATGGTGTCCGACGCTCCCGCACATCTGAGCGT
65 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGC-A
* * * * * * * * *
23301366 CC-AGGTGCC-GATGGTGCCCGAGACTCTCGCACGACCAAGAGTCTAGGTTGTCGATGGTGCTCG
129 CCAAGGT-CCTGATGGTG-CCGAGGCTCCCACACGACCAAGGGCCTAGTTTGCCAATGGTGCTTG
* * ** * * * * * * * *
23301429 AGGCTCCCGTACGA-CTAAGGGCCTAGTTTGCCGATGGTGTCTGAGGCTCCCACAC-ATCCAAGC
192 AGGCTCCCGCAC-ATCCAAGCACCGAG-GTACCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGG
* * * * * * *
23301492 ACCTAG-GTCCCGACGGTAG-CGGAGGCTCTCGCACGACCAAAGG
254 GCCTAGTTTGCCGATGGT-GCCCGAGGCCCTCACAC-ACCAAAGG
** * * * * * * * * *
23301535 CCTATTTTGCTGTTGGTGCCCAAGGATTCCGCACATCCAAGCATCGAGGTGCCGAAT-GTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCG-ATGGTGCCCA
* * * * * *
23301599 AGGCTCCCGTACGACCAAAGGCCTAGTTTGCCGATGGTG-CTTGAGGCTCTCGCACGA-CCAAGG
65 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTC-CGAGGCTCCCGCAC-ATCCAAGC
* * * * * ** * * * *
23301662 GCCTAGGTTTCTGATGGTGCCCGAGGTTCCCATAC-ATCCAAGCACCAAG-GTGTCGATGGTGCT
128 ACCAAGG-TCCTGATGGTG-CCGAGGCTCCCACACGA-CCAAGGGCCTAGTTTGCCAATGGTGCT
* ** * *** * * * *
23301725 CGAGGCTCCCGCACGA-CCAAGGGCCTAGG-ATCCGACATTGTCCGAGGCTCCCACAC-ATCATA
190 TGAGGCTCCCGCAC-ATCCAAGCACCGAGGTA-CCGATGGTGCCCGAGGCTCTCGCACGACCA-A
* * * *
23301787 --GCACTGAG-GTACCGATGGTGCCCGAGGCTCC-CATAGGACCAAAGG
252 GGGC-CT-AGTTTGCCGATGGTGCCCGAGGC-CCTCACA-CACCAAAGG
* * * * * * * **
23301832 CCTAGTTTGCCGATGGTGTCTGACGCTCTCGCACATCCGAGCGCCCAGGTGCCGATGGTGCCTGA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCAA
* * * * ** * **
23301897 GGCTCTCGCACAACCAAGGGCCTAGGTTACCGATGCTG-CCTGAGGCTCTTGCACAACCAAGGGC
66 GGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCC-GAGGCTCCCGCACATCCAAGCAC
* * ** * ** * * * *
23301961 CTAGTTTGTCGATGGTGTCC-AGGGCTCCCGCAC-ATCCAAGCACCTAG-GTCCCGATTGTGGC-
130 CAAGGTCCT-GATGGTG-CCGA-GGCTCCCACACGA-CCAAGGGCCTAGTTTGCCAATGGT-GCT
* * * * ** * ** * * **
23302022 CGAGGCTCTCACACAACCAAGGGCCTATTTTTACCGATGGTGCCCGAGGCACCCGCAC-ATGGAA
190 TGAGGCTCCCGCACATCCAAGCACCGA--GGTACCGATGGTGCCCGAGGCTCTCGCACGA-CCAA
** * * * ** *
23302086 GCACCAAG-GTACCGATGGTGCCCGAGGCTCC-CGTACGACCAAGGG
252 GGGCCTAGTTTGCCGATGGTGCCCGAGGC-CCTCACAC-ACCAAAGG
* * * ** * *
23302131 CCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCTCATCCGAGCACTTAGGTGTCGATGGTGCCCGA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCAA
** * * * * *
23302196 GGCTCTTGCACGATCAAGGGCCTAGGTTGCTGATGGTGTCTGAGGTTCCCGTACA-CTCAAGCAC
66 GGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATC-CAAGCAC
* * * * *
23302260 CAAGATGT-C-GATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTAGCCGATGGTGCCTG
130 CAAG--GTCCTGATGGTGC-CGAGGCTCCCACACGACCAAGGGCCTAGTTTGCCAATGGTGCTTG
* ** ** * * ** * * * ** *
23302323 AGGCTCCCGCA-AGACTGAGTGCCTAGTTTGTCGATGGTGTCCGACGCTCCCGCAC-ATCTGAGC
192 AGGCTCCCGCACA-TCCAAGCACCGAG-GTACCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGG
* * * * * * **
23302386 GCCGAG-GTACCGATGGTGCCCAACGCTCC-CATACGACCACGGG
254 GCCTAGTTTGCCGATGGTGCCCGAGGC-CCTCACAC-ACCAAAGG
* ** * * * * * *
23302429 CCTAGTTTGTTGATGGTGTCCAAGGCTCCCGCACATCCTAGCGCCTAGGTACCGATGGTGCCCGA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCAA
* * * *
23302494 GGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTACGAGGCTCCCGCACATCCGAGCGCC
66 GGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACC
* * * ** * *
23302559 CAGGTGCC-GATGGTGCCTGAGGCTCCCGCATGACCAAGGGCCTAGTTTGCCGGTGGT-ATCCGA
131 AAGGT-CCTGATGGTGCC-GAGGCTCCCACACGACCAAGGGCCTAGTTTGCCAATGGTGCT-TGA
* * ** * * * * * * *
23302622 GGCTGCCGCACATCCGAGTGCCTAGGTGCCGATGGTGCCCAAAGCTCTCGCCCGACCAAGGACTT
193 GGCTCCCGCACATCCAAGCACCGAGGTACCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCT
*
23302687 AGGTTGCCGATGGTG
258 AGTTTGCCGATGGTG
23302702 TCTGAGGCTC
Statistics
Matches: 2975, Mismatches: 694, Indels: 355
0.74 0.17 0.09
Matches are distributed among these distances:
295 39 0.01
296 249 0.08
297 570 0.19
298 1445 0.49
299 640 0.22
300 26 0.01
301 6 0.00
ACGTcount: A:0.20, C:0.31, G:0.29, T:0.20
Consensus pattern (296 bp):
CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCAA
GGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACC
AAGGTCCTGATGGTGCCGAGGCTCCCACACGACCAAGGGCCTAGTTTGCCAATGGTGCTTGAGGC
TCCCGCACATCCAAGCACCGAGGTACCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGT
TTGCCGATGGTGCCCGAGGCCCTCACACACCAAAGG
Found at i:23299998 original size:212 final size:208
Alignment explanation
Indices: 23299671--23300314 Score: 506
Period size: 212 Copynumber: 3.0 Consensus size: 208
23299661 AGCACCAAGG
* * * * * * * *** * *
23299671 TGCCGATGGTGCTCGAGGCTTCAGCACGACCAAGGGCCGAGGATGCCGACATTGTCCGATGCTCC
1 TGCCGATGATACTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTTCCGATGGTATCCGAGGCTCC
** * * * * *
23299736 TGCACAT-CAAGTACCGAGGTGCCTATGGTGCCCGAGGCTCCCGCACGACCAAAGGCCTAGTTTG
66 CACACATACAAGCACCAAGGTCCCGACGGTG-CCGAGGCTCCCGCACGACCAAAGGCCTAGTTTG
* * ***
23299800 CTAATGGTTCCGACGCTCCCACACATCTGAGCGTCCAGGTGCCGATGGTGCCCGAGACTCTTGTA
130 CTAATGGTTCCGAGGCTCCCACACATCT-AGC-TCGAGGTGCCGATGGTGCCCGAGACT-TCACA
23299865 CGACC-AAGAGCCTAGGT
192 CGACCAAAG-GCCTAGGT
* * * * *
23299882 TGTCGATGATGCTCGAGGCTCCCGTACGACTAAGGGCCTA-GTTTGCCGATGGTGTCCGAGGCTC
1 TGCCGATGATACTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTT-CCGATGGTATCCGAGGCTC
* * *
23299946 CCACACATACAAGCACCTAGGTCCCGACGGTAGCCGAGGCTCTCGCACGACCAAAGGCCTATTTT
65 CCACACATACAAGCACCAAGGTCCCGACGGT-GCCGAGGCTCCCGCACGACCAAAGGCCTAGTTT
* * * * * * * * * * *
23300011 GTTGATGGTGCCCAAGGATTCCGCACATCCAAGCATTGAGGTACCGAAT-GTGCCCGAGGCTTCA
129 GCTAATGGT-TCCGAGGCTCCCACACAT-CTAGC-TCGAGGTGCCG-ATGGTGCCCGAGACTTCA
*
23300075 CACGACCAAAGGCCTAGTT
190 CACGACCAAAGGCCTAGGT
* * * * *
23300094 TGCCGATGGTACTTGAGGCTCTCGCACGACCAAGGGCCTAGGTTTCTGATGGTATCCGAGGTTCC
1 TGCCGATGATACTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTTCCGATGGTATCCGAGGCTCC
* * ** * * **
23300159 CATACATCCAAGCACCAAGGTGTCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGATG
66 CACACATACAAGCACCAAGGTCCCGACGGTGC-CGAGGCTCCCGCACGACCAAAGGCCTAGTTTG
* * * * *
23300224 CCGACATTG-TCCGAGGCTCCCACACATCATAGCACTGAGGTGCCGATGGTGCCCGAGGCTCCCA
130 -CTA-ATGGTTCCGAGGCTCCCACACATC-TAGCTC-GAGGTGCCGATGGTGCCCGAGACT-TCA
* * * *
23300288 CAAGTCCAAGGGCCTAGTT
190 CACGACCAAAGGCCTAGGT
23300307 TGCCGATG
1 TGCCGATG
23300315 GTGTCCGACG
Statistics
Matches: 340, Mismatches: 78, Indels: 28
0.76 0.17 0.06
Matches are distributed among these distances:
210 2 0.01
211 59 0.17
212 205 0.60
213 68 0.20
214 6 0.02
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.20
Consensus pattern (208 bp):
TGCCGATGATACTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTTCCGATGGTATCCGAGGCTCC
CACACATACAAGCACCAAGGTCCCGACGGTGCCGAGGCTCCCGCACGACCAAAGGCCTAGTTTGC
TAATGGTTCCGAGGCTCCCACACATCTAGCTCGAGGTGCCGATGGTGCCCGAGACTTCACACGAC
CAAAGGCCTAGGT
Found at i:23302718 original size:170 final size:169
Alignment explanation
Indices: 23302280--23302771 Score: 531
Period size: 170 Copynumber: 2.9 Consensus size: 169
23302270 ATGGTGCTCG
* * ** * * * **
23302280 AGGCTCCCGCACGA-CCAAGGGCCTAGGTAGCCGATGGTGCCTGAGGCTCCCGCAAGACTGAGTG
1 AGGCTCCCGCAC-ATCCGAGCGCCTAGGTA-CCGATGGTGCCCAAAGCTCTCGCACGACCAAG-G
* * * * * *
23302344 -CCTAGTTTGTCGATGGTGTCCGACGCTCCCGCACATCTGAGCGCCGAGGTACCGATGGTGCCCA
63 ACCTAGGTTGCCGATGGTGT-CGAGGCTCCCGCACATCCGAGCGCCAAGGTGCCGATGGTGCCCA
** * * ** *
23302408 ACGCTCCCATACGACCACGGGCCTAGTTTGTTGATGGTGTCCA
127 ACGCTCCCGCAAGACCAAGGGCCTAGTTTGCCGATGGTATCCA
* * * *
23302451 AGGCTCCCGCACATCCTAGCGCCTAGGTACCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCC
1 AGGCTCCCGCACATCCGAGCGCCTAGGTACCGATGGTGCCCAAAGCTCTCGCACGACCAAGGACC
* ** *
23302516 TAGGTTGCCGATGGTGTACGAGGCTCCCGCACATCCGAGCGCCCAGGTGCCGATGGTGCCTGAGG
66 TAGGTTGCCGATGGTGT-CGAGGCTCCCGCACATCCGAGCGCCAAGGTGCCGATGGTGCCCAACG
* * *
23302581 CTCCCGCATGACCAAGGGCCTAGTTTGCCGGTGGTATCCG
130 CTCCCGCAAGACCAAGGGCCTAGTTTGCCGATGGTATCCA
* * * * *
23302621 AGGCTGCCGCACATCCGAGTGCCTAGGTGCCGATGGTGCCCAAAGCTCTCGCCCGACCAAGGACT
1 AGGCTCCCGCACATCCGAGCGCCTAGGTACCGATGGTGCCCAAAGCTCTCGCACGACCAAGGACC
* * * *
23302686 TAGGTTGCCGATGGTGTCTGAGGCTCCCGCACATTCTAGCACCAAGGTGCCGATGGTGCCCAATG
66 TAGGTTGCCGATGGTGTC-GAGGCTCCCGCACATCCGAGCGCCAAGGTGCCGATGGTGCCCAACG
23302751 CTCCCGCAAGACCAA-GGCCTA
130 CTCCCGCAAGACCAAGGGCCTA
23302772 TGCTGCCGGA
Statistics
Matches: 275, Mismatches: 43, Indels: 8
0.84 0.13 0.02
Matches are distributed among these distances:
169 8 0.03
170 242 0.88
171 25 0.09
ACGTcount: A:0.18, C:0.33, G:0.30, T:0.18
Consensus pattern (169 bp):
AGGCTCCCGCACATCCGAGCGCCTAGGTACCGATGGTGCCCAAAGCTCTCGCACGACCAAGGACC
TAGGTTGCCGATGGTGTCGAGGCTCCCGCACATCCGAGCGCCAAGGTGCCGATGGTGCCCAACGC
TCCCGCAAGACCAAGGGCCTAGTTTGCCGATGGTATCCA
Found at i:23302718 original size:255 final size:255
Alignment explanation
Indices: 23302268--23302771 Score: 627
Period size: 255 Copynumber: 2.0 Consensus size: 255
23302258 ACCAAGATGT
* *
23302268 CGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTAGCCGATGGTGCCTGAGGCTCCCGC
1 CGATGGTGCTCGAGGCTCCCGCACGACCAAGCGCCCAGGTAGCCGATGGTGCCTGAGGCTCCCGC
** * * * *
23302333 AAGACTGAGTGCCTAGTTTGTCGATGGTGTCCGACGCTCCCGCACATCTGAGCGCCGAGGTACCG
66 AAGACCAAGGGCCTAGTTTGCCGATGGTATCCGACGCTCCCGCACATCCGAGCGCCGAGGTACCG
* * * * * **
23302398 ATGGTGCCCAACGCTCCCATACGACCACGGGCCTAGTTTGTTGATGGTGTCCAAGGCTCCCGCAC
131 ATGGTGCCCAAAGCTCCCACACGACCAAGGACCTAGGTTGCCGATGGTGTCCAAGGCTCCCGCAC
* * * * *
23302463 ATCCTAGCGCCTAGGTACCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGC
196 ATCCTAGCACCAAGGTACCGATGGTGCCCAAGGCTCCCGCAAGACCAA-GGCCTAGGTTGC
*
23302524 CGATGGTG-TACGAGGCTCCCGCAC-ATCCGAGCGCCCAGGT-GCCGATGGTGCCTGAGGCTCCC
1 CGATGGTGCT-CGAGGCTCCCGCACGA-CCAAGCGCCCAGGTAGCCGATGGTGCCTGAGGCTCCC
* * * * * * *
23302586 GCATGACCAAGGGCCTAGTTTGCCGGTGGTATCCGAGGCTGCCGCACATCCGAGTGCCTAGGTGC
64 GCAAGACCAAGGGCCTAGTTTGCCGATGGTATCCGACGCTCCCGCACATCCGAGCGCCGAGGTAC
* * * * **
23302651 CGATGGTGCCCAAAGCTCTCGCCCGACCAAGGACTTAGGTTGCCGATGGTGTCTGAGGCTCCCGC
129 CGATGGTGCCCAAAGCTCCCACACGACCAAGGACCTAGGTTGCCGATGGTGTCCAAGGCTCCCGC
* * *
23302716 ACATTCTAGCACCAAGGTGCCGATGGTGCCCAATGCTCCCGCAAGACCAAGGCCTA
194 ACATCCTAGCACCAAGGTACCGATGGTGCCCAAGGCTCCCGCAAGACCAAGGCCTA
23302772 TGCTGCCGGA
Statistics
Matches: 209, Mismatches: 37, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
254 6 0.03
255 170 0.81
256 33 0.16
ACGTcount: A:0.18, C:0.33, G:0.31, T:0.19
Consensus pattern (255 bp):
CGATGGTGCTCGAGGCTCCCGCACGACCAAGCGCCCAGGTAGCCGATGGTGCCTGAGGCTCCCGC
AAGACCAAGGGCCTAGTTTGCCGATGGTATCCGACGCTCCCGCACATCCGAGCGCCGAGGTACCG
ATGGTGCCCAAAGCTCCCACACGACCAAGGACCTAGGTTGCCGATGGTGTCCAAGGCTCCCGCAC
ATCCTAGCACCAAGGTACCGATGGTGCCCAAGGCTCCCGCAAGACCAAGGCCTAGGTTGC
Found at i:23304507 original size:15 final size:15
Alignment explanation
Indices: 23304487--23304519 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
23304477 GCTTGATCAC
23304487 ACAACCCTTATTTGG
1 ACAACCCTTATTTGG
23304502 ACAACCCTTATTTGG
1 ACAACCCTTATTTGG
23304517 ACA
1 ACA
23304520 GTTTTTAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.30
Consensus pattern (15 bp):
ACAACCCTTATTTGG
Found at i:23308756 original size:85 final size:83
Alignment explanation
Indices: 23308649--23308970 Score: 279
Period size: 85 Copynumber: 3.8 Consensus size: 83
23308639 AATTTTGCTT
* * * * * * *
23308649 TGGTGCTCGACGCTCCCACACATACATGCACTAAGGAGCTGATGGTGCTCGAGGCTCTCGCACAT
1 TGGTGCTCAAGGCTCCCGCACATCCA-GCACCAAGGTGCCGATGGTGCTCGAGGCTCTCGCACAT
23308714 CCAAGCACCAACGTTGCCGA
65 CCAAGCACCAA-GTTGCCGA
* *
23308734 TGGTG-TCAAAGGCTCCCGCACATCCGAGCCACCAAGGTGCCGATGGTGCTCGAGGCCCTCGGAC
1 TGGTGCTC-AAGGCTCCCGCACATCC-AG-CACCAAGGTGCCGATGGTGCTCGAGGCTCTCGCAC
* * **
23308798 ATACAAGCACCAAGGTATCGA
63 ATCCAAGCACCAAGTTGCCGA
* * * * *
23308819 TTGTGCTCGAGCCTCTCGCACATCCAAGCACCAAGGTTGCCGATGGTGGC-CGAGGCTCTAGCAC
1 TGGTGCTCAAGGCTCCCGCACATCC-AGCACCAAGG-TGCCGATGGT-GCTCGAGGCTCTCGCAC
* *
23308883 ATCCGAGCACCAAGGTGCCGA
63 ATCCAAGCACCAAGTTGCCGA
* * * * ** * * *
23308904 TGGTGCTCGAGGCTCCCCCTCATCTGAGTCACCAAGGTTTCGATGGTGTTTGAGGCTCCCGCACA
1 TGGTGCTCAAGGCTCCCGCACATC-CAG-CACCAAGGTGCCGATGGTGCTCGAGGCTCTCGCACA
23308969 TC
64 TC
23308971 TGAGCCACCA
Statistics
Matches: 191, Mismatches: 37, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
84 11 0.06
85 125 0.65
86 55 0.29
ACGTcount: A:0.21, C:0.32, G:0.27, T:0.19
Consensus pattern (83 bp):
TGGTGCTCAAGGCTCCCGCACATCCAGCACCAAGGTGCCGATGGTGCTCGAGGCTCTCGCACATC
CAAGCACCAAGTTGCCGA
Found at i:23308937 original size:43 final size:42
Alignment explanation
Indices: 23308649--23308983 Score: 300
Period size: 43 Copynumber: 7.9 Consensus size: 42
23308639 AATTTTGCTT
* * * * * *
23308649 TGGTGCTCGACGCTCCCACACATAC-ATGCACTAAGGAGCTGA
1 TGGTGCTCGAGGCTCCCGCACATCCGA-GCACCAAGGTGCCGA
* * *
23308691 TGGTGCTCGAGGCTCTCGCACATCCAAGCACCAACGTTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCGAGCACCAA-GGTGCCGA
*
23308734 TGGTG-TCAAAGGCTCCCGCACATCCGAGCCACCAAGGTGCCGA
1 TGGTGCTC-GAGGCTCCCGCACATCCGAG-CACCAAGGTGCCGA
* * * **
23308777 TGGTGCTCGAGGC-CCTCGGACATACAAGCACCAAGGTATCGA
1 TGGTGCTCGAGGCTCC-CGCACATCCGAGCACCAAGGTGCCGA
* * * *
23308819 TTGTGCTCGAGCCTCTCGCACATCCAAGCACCAAGGTTGCCGA
1 TGGTGCTCGAGGCTCCCGCACATCCGAGCACCAAGG-TGCCGA
**
23308862 TGGTGGC-CGAGGCTCTAGCACATCCGAGCACCAAGGTGCCGA
1 TGGT-GCTCGAGGCTCCCGCACATCCGAGCACCAAGGTGCCGA
* * * **
23308904 TGGTGCTCGAGGCTCCCCCTCATCTGAGTCACCAAGGTTTCGA
1 TGGTGCTCGAGGCTCCCGCACATCCGAG-CACCAAGGTGCCGA
* * *
23308947 TGGTGTTTGAGGCTCCCGCACATCTGAGCCACCAAGG
1 TGGTGCTCGAGGCTCCCGCACATCCGAG-CACCAAGG
23308984 CGCTGGAGGC
Statistics
Matches: 241, Mismatches: 41, Indels: 21
0.80 0.14 0.07
Matches are distributed among these distances:
41 2 0.01
42 98 0.41
43 131 0.54
44 10 0.04
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.19
Consensus pattern (42 bp):
TGGTGCTCGAGGCTCCCGCACATCCGAGCACCAAGGTGCCGA
Found at i:23308937 original size:128 final size:128
Alignment explanation
Indices: 23308649--23308970 Score: 375
Period size: 128 Copynumber: 2.5 Consensus size: 128
23308639 AATTTTGCTT
* * * * *
23308649 TGGTGCTCGACGCTCC-CACACATACATGCACTAAGG-AGCTGATGGTGCTCGAGGCTCTCGCAC
1 TGGTGCTCGAGGC-CCTCCCACATACAAGCACCAAGGTATC-GATGGTGCTCGAGGCTCTCGCAC
* *
23308712 ATCCAAGCACCAACGTTGCCGATGGTGTCAAAGGCTCCCGCACATCCGAGCCACCAAGGTGCCGA
64 ATCCAAGCACCAACGTTGCCGATGGTGGCAAAGGCTCCAGCACATCCGAGCCACCAAGGTGCCGA
** * *
23308777 TGGTGCTCGAGGCCCTCGGACATACAAGCACCAAGGTATCGATTGTGCTCGAGCCTCTCGCACAT
1 TGGTGCTCGAGGCCCTCCCACATACAAGCACCAAGGTATCGATGGTGCTCGAGGCTCTCGCACAT
* ** *
23308842 CCAAGCACCAAGGTTGCCGATGGTGGCCGAGGCTCTAGCACATCCGAG-CACCAAGGTGCCGA
66 CCAAGCACCAACGTTGCCGATGGTGGCAAAGGCTCCAGCACATCCGAGCCACCAAGGTGCCGA
* * * * * *
23308904 TGGTGCTCGAGGCTCC-CCCTCAT-CTGAGTCACCAAGGTTTCGATGGTGTTTGAGGCTCCCGCA
1 TGGTGCTCGAGGC-CCTCCCACATAC-AAG-CACCAAGGTATCGATGGTGCTCGAGGCTCTCGCA
23308967 CATC
63 CATC
23308971 TGAGCCACCA
Statistics
Matches: 165, Mismatches: 24, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
126 1 0.01
127 35 0.21
128 127 0.77
129 2 0.01
ACGTcount: A:0.21, C:0.32, G:0.27, T:0.19
Consensus pattern (128 bp):
TGGTGCTCGAGGCCCTCCCACATACAAGCACCAAGGTATCGATGGTGCTCGAGGCTCTCGCACAT
CCAAGCACCAACGTTGCCGATGGTGGCAAAGGCTCCAGCACATCCGAGCCACCAAGGTGCCGA
Found at i:23309500 original size:43 final size:43
Alignment explanation
Indices: 23309453--23309587 Score: 180
Period size: 43 Copynumber: 3.1 Consensus size: 43
23309443 GGACCAAAGT
* * *
23309453 TGCCGGTGGTGCTTGGGGCTCCCGCACATCCGAGGCACCAAGG
1 TGCCGGTGGTGCTCGAGGCTCCCGCACATCCGAGCCACCAAGG
*
23309496 TGCCGATGGTGCTCGAGGCTCCCGCACATCCGAGCCACCAAGG
1 TGCCGGTGGTGCTCGAGGCTCCCGCACATCCGAGCCACCAAGG
*** * *
23309539 TGCCGGAACTGCTCGAGGCTCCCGCAAATTCGAGCCACCAAGG
1 TGCCGGTGGTGCTCGAGGCTCCCGCACATCCGAGCCACCAAGG
*
23309582 TACCGG
1 TGCCGG
23309588 CAGTACGAAG
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 81 1.00
ACGTcount: A:0.19, C:0.35, G:0.32, T:0.15
Consensus pattern (43 bp):
TGCCGGTGGTGCTCGAGGCTCCCGCACATCCGAGCCACCAAGG
Found at i:23317941 original size:43 final size:43
Alignment explanation
Indices: 23317892--23318825 Score: 532
Period size: 43 Copynumber: 22.0 Consensus size: 43
23317882 CGAGCATGCT
* * *
23317892 GCACATCCAAGCACCAAGGTTGTCGATGGTGACCGAGGCTCCC
1 GCACATCCAAGCACCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * * * *
23317935 GTACATCCGAGCCACCAAGG-TGCCGGTGGTGCCTGAGGCTCTCC
1 GCACATCCAAG-CACCTAGGTTGCCGATGGTGCCCGAGGCTC-CC
* ** ** *
23317979 -AACGA-CCAAGGGCCTATTTTGTCGATGGTGCCCGAGGCTCCC
1 GCAC-ATCCAAGCACCTAGGTTGCCGATGGTGCCCGAGGCTCCC
** ** * *
23318021 GCGTGA-CCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCC
1 GC-ACATCCAAGCACCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * *
23318064 GCACACCCGAGCA-CTCAGG-TGCCGATGGTGCCCGAGGCTCTC
1 GCACATCCAAGCACCT-AGGTTGCCGATGGTGCCCGAGGCTCCC
* ** * *
23318106 TCACGA-CCAAGGGCCTAGGATGCCGATGGTGCCCAAGGCTCCC
1 GCAC-ATCCAAGCACCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * * *
23318149 GTACGA-CCAAAG-GCCTAGTTTGCCGATGGTGTCCGAGGCTCCC
1 GCAC-ATCC-AAGCACCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * * * ** *
23318192 GCACAT--AAGCACCAAGGTTGCTGATAGTGTCTAAGGCTCCT
1 GCACATCCAAGCACCTAGGTTGCCGATGGTGCCCGAGGCTCCC
** * *
23318233 GCACATCTGAGCCACCAAGG-TGCCGATGGTGCTCGAGGCTCCC
1 GCACATCCAAG-CACCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * * * **
23318276 GCACATACAAGCACC-AAGTTGCCGATGGTGTCTGAGGCTCTT
1 GCACATCCAAGCACCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * * *
23318318 GCACATCCGAGCGCCTAGG-TGCTGATGGTGCCCGAGGCTCTC
1 GCACATCCAAGCACCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* ** ** * * *
23318360 ACACGA-CCAAGGGCCTAGGTTATCGATGGTGTCCAAGGTTCCC
1 GCAC-ATCCAAGCACCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * * * * * *
23318403 ACACATTCAAGTACCAAGG-TGTCGATGGTGCTCGAGGTTCCC
1 GCACATCCAAGCACCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* ** * * *
23318445 GCACAACCAAGGGCCTAGGTTGCTGATGGTGCCTGAGGCTCTC
1 GCACATCCAAGCACCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* *
23318488 GTACATCCAAGCACCGAGG-TGCCGATGGTGCCCGAGGCTCCC
1 GCACATCCAAGCACCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * ** * * * *
23318530 GCATGA-CTAAGGGCTTAGTTTGCCGATGGT-CTCCAAGGCTTCC
1 GCA-CATCCAAGCACCTAGGTTGCCGATGGTGC-CCGAGGCTCCC
* * * * * **
23318573 GCACATTCGAGCGCCTAGG-TGCCGATGGTGCCCAAAGCTTTC
1 GCACATCCAAGCACCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* ** * *
23318615 GCATGA-CCAAGGGCCTAGGTTGCCGATGGTGTCCGACGCTCCC
1 GCA-CATCCAAGCACCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * * * *
23318658 GCACATCCCAGCACCCAGG-TCCCGATTGTGCCCGAGGCTCTC
1 GCACATCCAAGCACCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* ** * *
23318700 ACACGA-CCAAGGGCCTAGGTTGTCGATGTTGCCCGAGGCTCCC
1 GCAC-ATCCAAGCACCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * ** * *
23318743 GTACAACCAAGGGCCTA-GTTCGCCGATTGTGTCCGAGGCTCCC
1 GCACATCCAAGCACCTAGGTT-GCCGATGGTGCCCGAGGCTCCC
* *
23318786 GCACATCCAAGCACCTAGG-TGTCGATGGTCCCCGAGGCTC
1 GCACATCCAAGCACCTAGGTTGCCGATGGTGCCCGAGGCTC
23318826 TTGCACGACC
Statistics
Matches: 679, Mismatches: 176, Indels: 73
0.73 0.19 0.08
Matches are distributed among these distances:
40 3 0.00
41 31 0.05
42 254 0.37
43 368 0.54
44 23 0.03
ACGTcount: A:0.19, C:0.32, G:0.29, T:0.20
Consensus pattern (43 bp):
GCACATCCAAGCACCTAGGTTGCCGATGGTGCCCGAGGCTCCC
Found at i:23318114 original size:85 final size:85
Alignment explanation
Indices: 23318001--23318825 Score: 653
Period size: 85 Copynumber: 9.7 Consensus size: 85
23317991 CCTATTTTGT
** *
23318001 CGATGGTGCCCGAGGCTCCCGCGTGACCAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGC
*
23318066 ACACCCGAGCACTC-AGGTGC
66 ACATCCGAGCAC-CAAGGTGC
* * * * * *
23318086 CGATGGTGCCCGAGGCTCTCTCACGACCAAGGGCCTAGGATGCCGATGGTGCCCAAGGCTCCCGT
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGC
* * * *
23318151 ACGA-CCAAAG-GCCTAGTTTGC
66 AC-ATCC-GAGCACCAAG-GTGC
* * ** * * * ** *
23318172 CGATGGTGTCCGAGGCTCCCGCAC-A-TAAGCACCAAGGTTGCTGATAGTGTCTAAGGCTCCTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGC
*
23318235 ACATCTGAGCCACCAAGGTGC
66 ACATCCGAG-CACCAAGGTGC
* * ** * * **
23318256 CGATGGTGCTCGAGGCTCCCGCAC-ATACAAGCACC-AAGTTGCCGATGGTGTCTGAGGCTCTTG
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCG
* *
23318319 CACATCCGAGCGCCTAGGTGC
65 CACATCCGAGCACCAAGGTGC
* * * ** * * *
23318340 TGATGGTGCCCGAGGCTCTCACACGACCAAGGGCCTAGGTTATCGATGGTGTCCAAGGTTCCCAC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGC
* * * *
23318405 ACATTCAAGTACCAAGGTGT
66 ACATCCGAGCACCAAGGTGC
* * * * *
23318425 CGATGGTGCTCGAGGTTCCCGCACAACCAAGGGCCTAGGTTGCTGATGGTG-CCTGAGGCTCTCG
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCC-GAGGCTCCCG
* * *
23318489 TACATCCAAGCACCGAGGTGC
65 CACATCCGAGCACCAAGGTGC
* * * * * * *
23318510 CGATGGTGCCCGAGGCTCCCGCATGACTAAGGGCTTAGTTTGCCGATGGTCTCCAAGGCTTCCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGC
* * *
23318575 ACATTCGAGCGCCTAGGTGC
66 ACATCCGAGCACCAAGGTGC
* * ** * *
23318595 CGATGGTGCCCAAAGCTTTCGCATGACCAAGGGCCTAGGTTGCCGATGGTGTCCGACGCTCCCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGC
* * *
23318660 ACATCCCAGCACCCAGGTCC
66 ACATCCGAGCACCAAGGTGC
* * * * * * *
23318680 CGATTGTGCCCGAGGCTCTCACACGACCAAGGGCCTAGGTTGTCGATGTTGCCCGAGGCTCCCGT
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGC
* * ** * *
23318745 ACAACCAAGGGCCTAGTTCGC
66 ACATCCGAGCACCAAGGT-GC
* * ** * **
23318766 CGATTGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCTAGG-TGTCGATGGTCCCCGAGGCTC
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTC
23318826 TTGCACGACC
Statistics
Matches: 585, Mismatches: 140, Indels: 30
0.77 0.19 0.04
Matches are distributed among these distances:
83 3 0.01
84 94 0.16
85 419 0.72
86 69 0.12
ACGTcount: A:0.19, C:0.32, G:0.29, T:0.20
Consensus pattern (85 bp):
CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGC
ACATCCGAGCACCAAGGTGC
Found at i:23318122 original size:128 final size:128
Alignment explanation
Indices: 23317915--23318660 Score: 579
Period size: 128 Copynumber: 5.8 Consensus size: 128
23317905 CCAAGGTTGT
* * * *
23317915 CGATGGTGACCGAGGCTCCCGTACATCCGAGCCACCAAGGTGCCGGTGGTGCCTGAGGCTCTC-C
1 CGATGGTGTCCGAGGCTCCCGCACATCCGAG-CACCAAGGTGCCGATGGTGCCCGAGGCTCTCTC
** * *
23317979 AACGACCAAGGGCCTATTTTGTCGATGGTGCCCGAGGCTCCCGCGTGACCAAGGGCCTAGTTTGC
65 -ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCATGACCAAGGGCCTAGTTTGC
*
23318044 CGATGGTGTCCGAGGCTCCCGCACACCCGAGCACTC-AGGTGCCGATGGTGCCCGAGGCTCTCTC
1 CGATGGTGTCCGAGGCTCCCGCACATCCGAGCAC-CAAGGTGCCGATGGTGCCCGAGGCTCTCTC
* * * * *
23318108 ACGACCAAGGGCCTAGGATGCCGATGGTGCCCAAGGCTCCCGTACGACCAAAGGCCTAGTTTGC
65 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCATGACCAAGGGCCTAGTTTGC
* * * * **
23318172 CGATGGTGTCCGAGGCTCCCGCACAT--AAGCACCAAGGTTGCTGATAGTGTCTAAGGCTC-CTG
1 CGATGGTGTCCGAGGCTCCCGCACATCCGAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCTCT-
** ** * * ** *
23318234 CAC-ATCTGAGCCACCAAGG-TGCCGATGGTGCTCGAGGCTCCCGCACAT-A-CAAGCACCAAG-
64 CACGA-CCAAG-GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG--CATGACCAAGGGCCTAGT
23318294 TTGC
125 TTGC
* ** * * * *
23318298 CGATGGTGTCTGAGGCTCTTGCACATCCGAGCGCCTAGGTGCTGATGGTGCCCGAGGCTCTCACA
1 CGATGGTGTCCGAGGCTCCCGCACATCCGAGCACCAAGGTGCCGATGGTGCCCGAGGCTCTCTCA
** * * * * * * ** * * *
23318363 CGACCAAGGGCCTAGGTTATCGATGGTGTCCAAGGTTCCCACA-CATTCAAGTACCAAG-GTGT
66 CGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCATGA-CCAAGGGCCTAGTTTGC
* * * ** * * *
23318425 CGATGGTG-CTCGAGGTTCCCGCACAACCAAGGGCCTAGGTTGCTGATGGTGCCTGAGGCTCTCG
1 CGATGGTGTC-CGAGGCTCCCGCACATCCGAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCTC-
** * * *
23318489 T-AC-ATCCAAGCACCGAGG-TGCCGATGGTGCCCGAGGCTCCCGCATGACTAAGGGCTTAGTTT
63 TCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCATGACCAAGGGCCTAGTTT
23318551 GC
127 GC
* * * * * * * * * *
23318553 CGATGGTCTCCAAGGCTTCCGCACATTCGAGCGCCTAGGTGCCGATGGTGCCCAAAGCTTTCGCA
1 CGATGGTGTCCGAGGCTCCCGCACATCCGAGCACCAAGGTGCCGATGGTGCCCGAGGCTCTCTCA
* * *
23318618 TGACCAAGGGCCTAGGTTGCCGATGGTGTCCGACGCTCCCGCA
66 CGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCA
23318661 CATCCCAGCA
Statistics
Matches: 483, Mismatches: 107, Indels: 55
0.75 0.17 0.09
Matches are distributed among these distances:
125 4 0.01
126 44 0.09
127 189 0.39
128 214 0.44
129 32 0.07
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.20
Consensus pattern (128 bp):
CGATGGTGTCCGAGGCTCCCGCACATCCGAGCACCAAGGTGCCGATGGTGCCCGAGGCTCTCTCA
CGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCATGACCAAGGGCCTAGTTTGC
Found at i:23318356 original size:127 final size:126
Alignment explanation
Indices: 23318040--23318532 Score: 325
Period size: 127 Copynumber: 3.9 Consensus size: 126
23318030 AGGGCCTAGT
* * * * * *
23318040 TTGCCGATGGTGTCCGAGGCTCCCGCACACCCGAGC-ACTCAGG-TGCCGATGGTGCCCGAGGCT
1 TTGCCGATGGTGTCTGAGGCTCCCGCACATCCAAGCGCCT-AGGTTGCTGATGGTGCCTGAGGCT
* * * * * * *
23318103 CT-CTCA-CGA-CCAAGGGCCTAGGATGCCGATGGTGCCCAAGGCTCCCGTACGA-CCAAAG-GC
65 CTGCACATCGAGCC-A---CCAAGG-TGCCGATGGTGCTCGAGGCTCCCGCAC-ATAC-AAGCAC
*
23318163 CTAG
123 CAAG
* * * * * *
23318167 TTTGCCGATGGTGTCCGAGGCTCCCGCACAT--AAGCACCAAGGTTGCTGATAGTGTCTAAGGCT
1 -TTGCCGATGGTGTCTGAGGCTCCCGCACATCCAAGCGCCTAGGTTGCTGATGGTGCCTGAGGCT
23318230 CCTGCACATCTGAGCCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACATACAAGCACCAAG
65 -CTGCACATC-GAGCCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACATACAAGCACCAAG
** * *
23318294 TTGCCGATGGTGTCTGAGGCTCTTGCACATCCGAGCGCCTAGG-TGCTGATGGTGCCCGAGGCTC
1 TTGCCGATGGTGTCTGAGGCTCCCGCACATCCAAGCGCCTAGGTTGCTGATGGTGCCTGAGGCTC
* ** * * * * *
23318358 T-CACA-CGA-CCAAGGGCCTAGGTTATCGATGGTG-TCCAAGGTTCCCACACATTCAAGTACCA
66 TGCACATCGAGCC-A---CCAAGG-TGCCGATGGTGCT-CGAGGCTCCCGCACATACAAGCACCA
23318419 AG
125 AG
* * * * *
23318421 GTGTCGATGGTG-CTCGAGGTTCCCGCACAACCAAGGGCCTAGGTTGCTGATGGTGCCTGAGGCT
1 TTGCCGATGGTGTCT-GAGGCTCCCGCACATCCAAGCGCCTAGGTTGCTGATGGTGCCTGAGGCT
* * * *
23318485 CTCGTACATCCAAG-CACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCA
65 CT-GCACAT-CGAGCCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCA
23318533 TGACTAAGGG
Statistics
Matches: 287, Mismatches: 53, Indels: 51
0.73 0.14 0.13
Matches are distributed among these distances:
122 2 0.01
123 3 0.01
124 1 0.00
125 4 0.01
126 47 0.16
127 144 0.50
128 70 0.24
129 3 0.01
130 4 0.01
131 4 0.01
132 5 0.02
ACGTcount: A:0.20, C:0.31, G:0.30, T:0.19
Consensus pattern (126 bp):
TTGCCGATGGTGTCTGAGGCTCCCGCACATCCAAGCGCCTAGGTTGCTGATGGTGCCTGAGGCTC
TGCACATCGAGCCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACATACAAGCACCAAG
Found at i:23318733 original size:128 final size:127
Alignment explanation
Indices: 23318585--23318844 Score: 324
Period size: 128 Copynumber: 2.0 Consensus size: 127
23318575 ACATTCGAGC
** **
23318585 GCCTAGGTGCCGATGGTGCCCAAAGCTTTCGCATGACCAAGGGCCTAGGTT-GCCGATGGTGTCC
1 GCCTAGGTGCCGATGGTGCCCAAAGCTCCCGCACAACCAAGGGCCTA-GTTCGCCGATGGTGTCC
* * *
23318649 GACGCTCCCGCACATCCCAGCACCCAGGTCCCGATTGTGCCCGAGGCTCTCACACGACCAAGG
65 GACGCTCCCGCACATCCAAGCACCCAGGTCCCGATGGTCCCCGAGGCTCTCACACGACCAAGG
* * * * * *
23318712 GCCTAGGTTGTCGATGTTGCCCGAGGCTCCCGTACAACCAAGGGCCTAGTTCGCCGATTGTGTCC
1 GCCTAGG-TGCCGATGGTGCCCAAAGCTCCCGCACAACCAAGGGCCTAGTTCGCCGATGGTGTCC
* * ** **
23318777 GAGGCTCCCGCACATCCAAGCACCTAGGTGTCGATGGTCCCCGAGGCTCTTGCACGACCAAGG
65 GACGCTCCCGCACATCCAAGCACCCAGGTCCCGATGGTCCCCGAGGCTCTCACACGACCAAGG
23318840 GCCTA
1 GCCTA
23318845 TGCTGCCGGA
Statistics
Matches: 112, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
127 10 0.09
128 102 0.91
ACGTcount: A:0.18, C:0.34, G:0.28, T:0.19
Consensus pattern (127 bp):
GCCTAGGTGCCGATGGTGCCCAAAGCTCCCGCACAACCAAGGGCCTAGTTCGCCGATGGTGTCCG
ACGCTCCCGCACATCCAAGCACCCAGGTCCCGATGGTCCCCGAGGCTCTCACACGACCAAGG
Found at i:23318882 original size:24 final size:24
Alignment explanation
Indices: 23318850--23318927 Score: 84
Period size: 24 Copynumber: 3.2 Consensus size: 24
23318840 GCCTATGCTG
* **
23318850 CCGGAATGGTTCACCGGAGCACTG
1 CCGGGATGGTTCACCGGAGCACCA
* * *
23318874 CTGGGATGGTTCACCAGAACACCA
1 CCGGGATGGTTCACCGGAGCACCA
* *
23318898 CCGGGATGGATCACCGGAGCACCG
1 CCGGGATGGTTCACCGGAGCACCA
23318922 CCGGGA
1 CCGGGA
23318928 ACCTAACCAG
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.23, C:0.31, G:0.33, T:0.13
Consensus pattern (24 bp):
CCGGGATGGTTCACCGGAGCACCA
Found at i:23324555 original size:42 final size:42
Alignment explanation
Indices: 23324479--23324631 Score: 184
Period size: 43 Copynumber: 3.6 Consensus size: 42
23324469 GGGGCTCTTG
* * *
23324479 CACATCCGAGGCGA-CAAGGTGCCAATGGTGCTCGAGGCTACCA
1 CACATCCGA-GCCACCAAGGTGCCGATGCTGCTCGAGGCT-CCA
* *
23324522 CACATCCAAG-CACCAAAGTGCCGATGCTGCTCGAGGCTCTCA
1 CACATCCGAGCCACCAAGGTGCCGATGCTGCTCGAGGCTC-CA
* * *
23324564 CACATCCGAGCCACCAAGGTACTGATGCTGCTCGAGGCTCCCG
1 CACATCCGAGCCACCAAGGTGCCGATGCTGCTCGAGGCT-CCA
23324607 CACATCCGAGCCACCAAGGTGCCGA
1 CACATCCGAGCCACCAAGGTGCCGA
23324632 CAGTGGGGAG
Statistics
Matches: 94, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
41 2 0.02
42 34 0.36
43 57 0.61
44 1 0.01
ACGTcount: A:0.25, C:0.35, G:0.25, T:0.14
Consensus pattern (42 bp):
CACATCCGAGCCACCAAGGTGCCGATGCTGCTCGAGGCTCCA
Found at i:23331598 original size:43 final size:43
Alignment explanation
Indices: 23331547--23332288 Score: 295
Period size: 43 Copynumber: 17.5 Consensus size: 43
23331537 GCACCCAAGA
* *
23331547 GCCGATGGTGCCCGAGGCTCTCACACGACCAAGGGCCTAGGAT
1 GCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTT
* * * * *
23331590 GCCGATGGTGCCCGAGACACCCGTACGACCAAGGGCCTAGTTT
1 GCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTT
* * ** * * ** *
23331633 GCCAATGGTGTCTAAGGCTCCCGCAC-A-TAAGCACCAAGGTT
1 GCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTT
* * * ** * ** *
23331674 GCCGATGGTGTCTGAGGCTCCCGCATAAACAAGCACC-AAGTT
1 GCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTT
* * * ** *
23331716 -CTCGATGGTGTCCGAGGCACTCGTAC-ATCTGAGCGCCTAGG-T
1 GC-CGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTT
* *
23331758 GTCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGGTT
1 GCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTT
* * ** *
23331801 GCCGATGGTGTCCGAGGTTAC-CGCAC-ATCCAAGCACCAAGGTAT
1 GCCGATGGTGCCCGAGGCT-CTCGCACGA-CCAAGGGCCTAGGT-T
* * * * * * * *
23331845 --CGATGGTGCTCAAGGCTCCCGGATGAACAAGGTCCTAAGTT
1 GCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTT
* * * * ** * ** *
23331886 GCCAATAGTGCCCAAGGCTCCCATAC-ATCCATGCACCGAGG-T
1 GCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTT
* * ** * * **
23331928 GCCGATGGTGCCCGCGGCTCCCGCATAACTAAGGGCTTATTTT
1 GCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTT
* * ***
23331971 ACCGATGGT-CTCCGAGGCTAC-CACAC-ATCCAAACACCTAGG-T
1 GCCGATGGTGC-CCGAGGCT-CTCGCACGA-CCAAGGGCCTAGGTT
* * **
23332013 ACCGATGTTGCCCGAGGCTCTTACACGACCAAGGGCCTAGGTT
1 GCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTT
** * * * ** ** *
23332056 ATCGATGGTGTCCGACGCTCCCGCAC-ATCTGAGCTCCCAGG-T
1 GCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTT
* *
23332098 -CTTGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGATT
1 GC-CGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTT
* * *
23332141 ACCGATGGTGCCCGAGGCTACT-GCCCGACCAAGGGCCTAGTTT
1 GCCGATGGTGCCCGAGGCT-CTCGCACGACCAAGGGCCTAGGTT
* *** * ***
23332184 CCCGATGGTGTTTGAGGCTTTCGCAC-ATCCAACCACCTAGG-T
1 GCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTT
* * * *
23332226 GCTGATGGTGCCCAAGGCTCTCGCACGACCAATGACCTAGGTT
1 GCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTT
**
23332269 GCCGATGGTGTTCGAGGCTC
1 GCCGATGGTGCCCGAGGCTC
23332289 CTGCAAATCC
Statistics
Matches: 512, Mismatches: 152, Indels: 70
0.70 0.21 0.10
Matches are distributed among these distances:
41 37 0.07
42 208 0.41
43 261 0.51
44 6 0.01
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (43 bp):
GCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTT
Found at i:23331763 original size:42 final size:43
Alignment explanation
Indices: 23331717--23331817 Score: 116
Period size: 42 Copynumber: 2.4 Consensus size: 43
23331707 CACCAAGTTC
* * **
23331717 TCGATGGTGTCCGAGGCACTCGTAC-ATCTGAGCGCCTAGG-TG
1 TCGATGGTGTCCGAGGCACTCGCACGACCAAAG-GCCTAGGTTG
* *
23331759 TCGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGGTTG
1 TCGATGGTGTCCGAGGCACTCGCACGACCAAAGGCCTAGGTTG
*
23331802 CCGATGGTGTCCGAGG
1 TCGATGGTGTCCGAGG
23331818 TTACCGCACA
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
42 29 0.59
43 20 0.41
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.21
Consensus pattern (43 bp):
TCGATGGTGTCCGAGGCACTCGCACGACCAAAGGCCTAGGTTG
Found at i:23331829 original size:85 final size:85
Alignment explanation
Indices: 23331592--23332161 Score: 387
Period size: 85 Copynumber: 6.7 Consensus size: 85
23331582 CCTAGGATGC
* * * * * * * ** *
23331592 CGATGGTGCCCGAGACACCCGTACGACCAAGGGCCTAGTTTGCCAATGGTGTCTAAGGCTCCCGC
1 CGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTACCGATGGTGTCCGAGGCTACCGC
*
23331657 ACAT--AAGCACCAAGGT-T
66 ACATCCAAGCACCTAGGTAT
* * * ** * ** *
23331674 GCCGATGGTGTCTGAGGCTCCCGCATAAACAAGCACC-AAGTT-CTCGATGGTGTCCGAGGC-AC
1 --CGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTAC-CGATGGTGTCCGAGGCTAC
* ** * *
23331736 TCGTACATCTGAGCGCCTAGGTGT
63 -CGCACATCCAAGCACCTAGGTAT
* * *
23331760 CGATGGTGCCCGAGGCTCTCGCACGACCAAAGGCCTAGGTTGCCGATGGTGTCCGAGGTTACCGC
1 CGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTACCGATGGTGTCCGAGGCTACCGC
*
23331825 ACATCCAAGCACCAAGGTAT
66 ACATCCAAGCACCTAGGTAT
* * * * * * * * * * * * * * **
23331845 CGATGGTGCTCAAGGCTCCCGGATGAACAAGGTCCTAAGTTGCCAATAGTGCCCAAGGCTCCCAT
1 CGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTACCGATGGTGTCCGAGGCTACCGC
* * **
23331910 ACATCCATGCACCGAGGTGC
66 ACATCCAAGCACCTAGGTAT
* * ** * * ** * *
23331930 CGATGGTGCCCGCGGCTCCCGCATAACTAAGGGCTTATTTTACCGATGGTCTCCGAGGCTACCAC
1 CGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTACCGATGGTGTCCGAGGCTACCGC
* *
23331995 ACATCCAAACACCTAGGTAC
66 ACATCCAAGCACCTAGGTAT
* ** * * *
23332015 CGATGTTGCCCGAGGCTCTTACACGACCAAGGGCCTAGGTTATCGATGGTGTCCGACGCTCCCGC
1 CGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTACCGATGGTGTCCGAGGCTACCGC
** * * *
23332080 ACATCTGAGCTCCCAGGTCT
66 ACATCCAAGCACCTAGGTAT
* * *
23332100 TGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGATTACCGATGGTGCCCGAGGCTAC
1 CGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTACCGATGGTGTCCGAGGCTAC
23332162 TGCCCGACCA
Statistics
Matches: 365, Mismatches: 113, Indels: 15
0.74 0.23 0.03
Matches are distributed among these distances:
82 2 0.01
83 22 0.06
84 51 0.14
85 286 0.78
86 4 0.01
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (85 bp):
CGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTACCGATGGTGTCCGAGGCTACCGC
ACATCCAAGCACCTAGGTAT
Found at i:23332153 original size:128 final size:127
Alignment explanation
Indices: 23332012--23332288 Score: 313
Period size: 128 Copynumber: 2.2 Consensus size: 127
23332002 AACACCTAGG
* *
23332012 TACCGATGTTGCCCGAGGCTCTTACACGACCAAGGGCCTAGGTTATCGATGGTGTCCGACGCTCC
1 TACCGATGGTGCCCGAGGCTC-TACACGACCAAGGGCCTAGGTTACCGATGGTGTCCGACGCTCC
** * * * *
23332077 CGCACATCTGAGCTCCCAGGT-CTTGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGAT
65 CGCACATCCAACCACCCAGGTGC-TGATGGTGCCCAAGGCTCTCGCACGACCAAGGACCTAGAT
* * * * ** * **
23332140 TACCGATGGTGCCCGAGGCTACTGCCCGACCAAGGGCCTAGTTTCCCGATGGTGTTTGAGGCTTT
1 TACCGATGGTGCCCGAGGCT-CTACACGACCAAGGGCCTAGGTTACCGATGGTGTCCGACGCTCC
* * *
23332205 CGCACATCCAACCACCTAGGTGCTGATGGTGCCCAAGGCTCTCGCACGACCAATGACCTAGGT
65 CGCACATCCAACCACCCAGGTGCTGATGGTGCCCAAGGCTCTCGCACGACCAAGGACCTAGAT
* **
23332268 TGCCGATGGTGTTCGAGGCTC
1 TACCGATGGTGCCCGAGGCTC
23332289 CTGCAAATCC
Statistics
Matches: 124, Mismatches: 23, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
127 1 0.01
128 121 0.98
129 2 0.02
ACGTcount: A:0.18, C:0.31, G:0.29, T:0.22
Consensus pattern (127 bp):
TACCGATGGTGCCCGAGGCTCTACACGACCAAGGGCCTAGGTTACCGATGGTGTCCGACGCTCCC
GCACATCCAACCACCCAGGTGCTGATGGTGCCCAAGGCTCTCGCACGACCAAGGACCTAGAT
Found at i:23334509 original size:43 final size:43
Alignment explanation
Indices: 23334461--23334628 Score: 203
Period size: 43 Copynumber: 3.9 Consensus size: 43
23334451 ATCCCCACTG
* *
23334461 TTGGCACCTTGGTGGCTCAGATGTGCTGGAGCCTCGAGCAGAA
1 TTGGCACCTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCAGCA
* *
23334504 TTGGCACCTTGGTAGCTGAGATGTGCGGGAGCCTCGAGCAGCA
1 TTGGCACCTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCAGCA
* ** * *
23334547 TTGGCACTTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCACCG
1 TTGGCACCTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCAGCA
* * * * *
23334589 TCGGTACCTTGGTGCCTCAGATGTGTGGGAGCCCCGAGCA
1 TTGGCACCTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCA
23334629 CCATCGAGAA
Statistics
Matches: 107, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
42 35 0.33
43 72 0.67
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.23
Consensus pattern (43 bp):
TTGGCACCTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCAGCA
Found at i:23334598 original size:85 final size:86
Alignment explanation
Indices: 23334461--23334628 Score: 205
Period size: 85 Copynumber: 2.0 Consensus size: 86
23334451 ATCCCCACTG
* * * *
23334461 TTGGCACCTTGGTGGCTCAGATGTGCTGGAGCCTCGAGCAGAATTGGCACCTTGGTAG-CTGAGA
1 TTGGCACCTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCACAATCGGCACCTTGGT-GCCTCAGA
*
23334525 TGTGCGGGAGCCTCGAGCAGCA
65 TGTGCGGGAGCCCCGAGCAGCA
* ** ** *
23334547 TTGGCACTTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCACCGTCGGTACCTTGGTGCCTCAGAT
1 TTGGCACCTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCACAATCGGCACCTTGGTGCCTCAGAT
*
23334611 GTGTGGGAGCCCCGAGCA
66 GTGCGGGAGCCCCGAGCA
23334629 CCATCGAGAA
Statistics
Matches: 69, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
84 1 0.01
85 56 0.81
86 12 0.17
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.23
Consensus pattern (86 bp):
TTGGCACCTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCACAATCGGCACCTTGGTGCCTCAGAT
GTGCGGGAGCCCCGAGCAGCA
Found at i:23335157 original size:42 final size:42
Alignment explanation
Indices: 23335087--23335193 Score: 169
Period size: 42 Copynumber: 2.5 Consensus size: 42
23335077 AGAGCCTCCA
* *
23335087 GCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATTG
1 GCACTTTGGT-GCTCGGATGTGCAGGAGCCTCGAGCAGCATTG
*
23335130 GCACTTTGGTGCTTGGATGTGCAGGAGCCTCGAGCAGCATTG
1 GCACTTTGGTGCTCGGATGTGCAGGAGCCTCGAGCAGCATTG
23335172 GCACTTTGGTGCCTCGGATGTG
1 GCACTTTGGTG-CTCGGATGTG
23335194 TGGAAGCCTC
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
42 41 0.69
43 18 0.31
ACGTcount: A:0.14, C:0.23, G:0.37, T:0.25
Consensus pattern (42 bp):
GCACTTTGGTGCTCGGATGTGCAGGAGCCTCGAGCAGCATTG
Found at i:23339620 original size:75 final size:75
Alignment explanation
Indices: 23339492--23339631 Score: 235
Period size: 75 Copynumber: 1.9 Consensus size: 75
23339482 TCCAAATCCC
*
23339492 AAAGGTAGAATTTGGATATCATTACATGTGACGTACCCAACAATGAACAAATCGTCCCGCTCCCT
1 AAAGGTAGAATTTAGATATCATTACATGTGACGTACCCAACAATGAACAAATCGTCCCGCTCCCT
23339557 GTGCAATCGT
66 GTGCAATCGT
* * * *
23339567 AAAGGTAGAATTTAGATATCGTTACATGTGATGTACCCAACAATGAACGAATCGTCCCGGTCCCT
1 AAAGGTAGAATTTAGATATCATTACATGTGACGTACCCAACAATGAACAAATCGTCCCGCTCCCT
23339632 CCCCTTGGTT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
75 60 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (75 bp):
AAAGGTAGAATTTAGATATCATTACATGTGACGTACCCAACAATGAACAAATCGTCCCGCTCCCT
GTGCAATCGT
Found at i:23339749 original size:43 final size:43
Alignment explanation
Indices: 23339633--23339741 Score: 182
Period size: 43 Copynumber: 2.5 Consensus size: 43
23339623 CCGGTCCCTC
* *
23339633 CCCTTGGTTGTGCGTGAGCCTCGGGTACCATCGACAACCTAGG
1 CCCTTGGTCGTGCGAGAGCCTCGGGTACCATCGACAACCTAGG
* *
23339676 CCCTTGGTCGGGCGGGAGCCTCGGGTACCATCGACAACCTAGG
1 CCCTTGGTCGTGCGAGAGCCTCGGGTACCATCGACAACCTAGG
23339719 CCCTTGGTCGTGCGAGAGCCTCG
1 CCCTTGGTCGTGCGAGAGCCTCG
23339742 AGCACCATTT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 61 1.00
ACGTcount: A:0.15, C:0.32, G:0.33, T:0.20
Consensus pattern (43 bp):
CCCTTGGTCGTGCGAGAGCCTCGGGTACCATCGACAACCTAGG
Found at i:23340244 original size:85 final size:85
Alignment explanation
Indices: 23340097--23340308 Score: 248
Period size: 85 Copynumber: 2.5 Consensus size: 85
23340087 AAGCCATTCT
* * * * * * *
23340097 GGCAACATAGTCCCTTGGTCGTGCGGGAGCCTCGGGCACCACCGGCACCTTGGTGCTAGGATGTG
1 GGCAACCTAGGCCCTTGGTCGTGCGAGACCCTCGGGAACCATCGGCACCTAGGTGCTAGGATGTG
**
23340162 CAGGAGCCTC-ATACACCGTA
66 CAGGAGCCTCGA-ACACAATA
* * *
23340182 GGCAACCTAGGCCCTTGGTCGTGTGAGATCCTCGGGAACCATCGGCACCTAGGTGCTTGGATGTG
1 GGCAACCTAGGCCCTTGGTCGTGCGAGACCCTCGGGAACCATCGGCACCTAGGTGCTAGGATGTG
* *
23340247 CTGGAGCCTCGAACACAATC
66 CAGGAGCCTCGAACACAATA
* *
23340267 GGCAGA-CTAGGCCCTTGGTCATGCGAGACCCTCGGGGACCAT
1 GGCA-ACCTAGGCCCTTGGTCGTGCGAGACCCTCGGGAACCAT
23340309 TAGCAACCTA
Statistics
Matches: 108, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
85 106 0.98
86 2 0.02
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (85 bp):
GGCAACCTAGGCCCTTGGTCGTGCGAGACCCTCGGGAACCATCGGCACCTAGGTGCTAGGATGTG
CAGGAGCCTCGAACACAATA
Found at i:23340257 original size:42 final size:42
Alignment explanation
Indices: 23340117--23340257 Score: 108
Period size: 42 Copynumber: 3.3 Consensus size: 42
23340107 TCCCTTGGTC
* * * * *
23340117 GTGCGGGAGCCTCGGGCACCACCGGCACCTTGGTGCTAGGAT
1 GTGCTGGAGCCTCGGGAACCATCGGCACCTAGGTGCTTGGAT
* ** * * **
23340159 GTGCAGGAGCCTC-ATACACCGTAGGCAACCTAGGCCCTTGG-T
1 GTGCTGGAGCCTCGGGA-ACCATCGGC-ACCTAGGTGCTTGGAT
*
23340201 CGTG-TGAGATCCTCGGGAACCATCGGCACCTAGGTGCTTGGAT
1 -GTGCTG-GAGCCTCGGGAACCATCGGCACCTAGGTGCTTGGAT
23340244 GTGCTGGAGCCTCG
1 GTGCTGGAGCCTCG
23340258 AACACAATCG
Statistics
Matches: 72, Mismatches: 20, Indels: 14
0.68 0.19 0.13
Matches are distributed among these distances:
42 42 0.58
43 29 0.40
44 1 0.01
ACGTcount: A:0.17, C:0.29, G:0.34, T:0.20
Consensus pattern (42 bp):
GTGCTGGAGCCTCGGGAACCATCGGCACCTAGGTGCTTGGAT
Found at i:23340320 original size:43 final size:43
Alignment explanation
Indices: 23340273--23340356 Score: 114
Period size: 43 Copynumber: 2.0 Consensus size: 43
23340263 AATCGGCAGA
* * * *
23340273 CTAGGCCCTTGGTCATGCGAGACCCTCGGGGACCATTAGCAAC
1 CTAGGCACTTGGTCATGCGAAACCCTCGGGCACCATCAGCAAC
* *
23340316 CTAGGCACTTGGTCGTGCGAAAGCCTCGGGCACCATCAGCA
1 CTAGGCACTTGGTCATGCGAAACCCTCGGGCACCATCAGCA
23340357 CTTGGGCGCT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.18
Consensus pattern (43 bp):
CTAGGCACTTGGTCATGCGAAACCCTCGGGCACCATCAGCAAC
Found at i:23340554 original size:43 final size:42
Alignment explanation
Indices: 23340504--23341310 Score: 227
Period size: 43 Copynumber: 19.0 Consensus size: 42
23340494 TCGGATAAGC
* *
23340504 AGGAGCCTCGGACACCATCAGCAAACTAGGCTCTTGGTCGTGT
1 AGGAGCCTCGGACACCATC-GGAACCTAGGCTCTTGGTCGTGT
* * * *
23340547 AGGAGCCTCGGGCACCATC-GACACCTTGG-TGCTATGAT-GTGC
1 AGGAGCCTCGGACACCATCGGA-ACCTAGGCT-CT-TGGTCGTGT
* ** * * *
23340589 GGGAGCCTCGGACACTGTTGGTAACCTAGGCCCTTGGTCGTGC
1 AGGAGCCTCGGACACCATCGG-AACCTAGGCTCTTGGTCGTGT
* * * *
23340632 AGGAGCCTCGGACACCATCGGTAAACTAGGCCCTTGGTAGTGC
1 AGGAGCCTCGGACACCATCGG-AACCTAGGCTCTTGGTCGTGT
* * * * * *
23340675 AGGAGCCTTGGGCACCAGC-GATACCTCGG-TACTATGAT-GTGC
1 AGGAGCCTCGGACACCATCGGA-ACCTAGGCT-CT-TGGTCGTGT
* * *
23340717 AGGAGCCTCGAACA-CATTCAGCAACCTAGGCTCTTGGTCTTGT
1 AGGAGCCTCGGACACCA-TC-GGAACCTAGGCTCTTGGTCGTGT
* *
23340760 -GGAGCCTC-GAGCACCA-CCGACACCT-GGGTGCTTGGAT-GTGT
1 AGGAGCCTCGGA-CACCATCGGA-ACCTAGGCT-CTTGG-TCGTGT
* * * * * ** *
23340801 GGGAACCTCGGACACCAACGACAACATAATACT-TTTGTCGTG-
1 AGGAGCCTCGGACACCATCG-GAACCT-AGGCTCTTGGTCGTGT
* * * * * * *
23340843 CGAGAGCCTCGGGCACCATCGGCACCTGGGCGCTCGGAT-GTGC
1 AG-GAGCCTCGGACACCATCGGAACCTAGGCTCTTGG-TCGTGT
* * * * ** *
23340886 GGGAGCCCCGGACACCATCTAGAAACTAAACCCTTGGTCGTGT
1 AGGAGCCTCGGACACCATC-GGAACCTAGGCTCTTGGTCGTGT
* ** *
23340929 GGGAGCCTC-GAGCACCATCGGTAAAATAGGCCCTTGGTCGTGT
1 AGGAGCCTCGGA-CACCATCGG-AACCTAGGCTCTTGGTCGTGT
*
23340972 -GAGAGCCTCGGGCACCATC-GACACCTAGG-TGCTTGGAT-GTG-
1 AG-GAGCCTCGGACACCATCGGA-ACCTAGGCT-CTTGG-TCGTGT
* * * * *
23341013 CGAGAGCCTCAGACACTATCGGCAAACTAGGCCCTTGGTC--GT
1 AG-GAGCCTCGGACACCATCGG-AACCTAGGCTCTTGGTCGTGT
* * * *
23341055 ACGGAAGCCTCGGGCACCATCGGTAACCTAGGCCCTTAGTCATGT
1 A-GG-AGCCTCGGACACCATCGG-AACCTAGGCTCTTGGTCGTGT
* * * *
23341100 -GAGAGCCTC-GAGCACCATCGGCACCAAGG-TGCTCGGAT-GTGC
1 AG-GAGCCTCGGA-CACCATCGGAACCTAGGCT-CTTGG-TCGTGT
* * * *
23341142 AGGAGCCTCGGACACCATCAGAAAACTAGGC-CATTGGTCTTGG
1 AGGAGCCTCGGACACCATC-GGAACCTAGGCTC-TTGGTCGTGT
* * * * *
23341185 GGGAGCCTC-AAGCACCATCGGCTACCTAGGCCCTTGGTCGTGC
1 AGGAGCCTCGGA-CACCATCGG-AACCTAGGCTCTTGGTCGTGT
** * * * * * *
23341228 AAAAGCATCGGGCACCATC-GACACCTGGGTTCTCAGAT-GTGT
1 AGGAGCCTCGGACACCATCGGA-ACCTAGGCTCT-TGGTCGTGT
* * * *
23341270 GGGAGCCTCGGACACCATTGGAAAACTAGGCCCTTGGTCGT
1 AGGAGCCTCGGACACCATCGG-AACCTAGGCTCTTGGTCGT
23341311 ACGAGAGCCT
Statistics
Matches: 553, Mismatches: 142, Indels: 138
0.66 0.17 0.17
Matches are distributed among these distances:
40 4 0.01
41 22 0.04
42 196 0.35
43 319 0.58
44 9 0.02
45 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.20
Consensus pattern (42 bp):
AGGAGCCTCGGACACCATCGGAACCTAGGCTCTTGGTCGTGT
Found at i:23340554 original size:85 final size:84
Alignment explanation
Indices: 23340465--23340648 Score: 188
Period size: 85 Copynumber: 2.2 Consensus size: 84
23340455 GTTGTGTGAA
* *
23340465 AGCCTCAGGCACCACCGGCACCTGGGCGCTCGGATAAGCAGGAGCCTCGGACACCATCAGCAAAC
1 AGCCTC-GGCACCACCGACACCTGGGCGCTAGGATAAGCAGGAGCCTCGGACACCATCAGCAAAC
* *
23340530 TAGGCTCTTGGTCGTGTAGG
65 TAGGCCCTTGGTCGTGCAGG
* * * * ** * ** ** * *
23340550 AGCCTCGGGCACCATCGACACCTTGGTGCTATGATGTGCGGGAGCCTCGGACACTGTTGGTAACC
1 AGCCTC-GGCACCACCGACACCTGGGCGCTAGGATAAGCAGGAGCCTCGGACACCATCAGCAAAC
23340615 TAGGCCCTTGGTCGTGCAGG
65 TAGGCCCTTGGTCGTGCAGG
23340635 AGCCTCGGACACCA
1 AGCCTCGG-CACCA
23340649 TCGGTAAACT
Statistics
Matches: 80, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
84 2 0.03
85 78 0.98
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (84 bp):
AGCCTCGGCACCACCGACACCTGGGCGCTAGGATAAGCAGGAGCCTCGGACACCATCAGCAAACT
AGGCCCTTGGTCGTGCAGG
Found at i:23340650 original size:213 final size:208
Alignment explanation
Indices: 23340110--23341204 Score: 692
Period size: 213 Copynumber: 5.1 Consensus size: 208
23340100 AACATAGTCC
* * * * * *
23340110 CTTGGTCGTGCGGGAGCCTCGGGCACCACCGGCACCTTGGTGCTAGGATGTGCAGGAGCCTCATA
1 CTTGGTCGTG-TGGAGCCTCGGGCACCATCGACACCTTGGTGCT-TGATGTGCGGGAGCCTCAGA
* * * * *
23340175 CACCGTAGGCAACCTAGGCCCTTGGTCGTGTGAGATCCTCGGGA-ACCATCGGC-ACCTAGGTGC
64 CACCATCGGCAACCTAGGCCCTTGGTCGTGCG-GAGCCTC-GGACACCATCGGCTACCTAGG-CC
* * * * * * * *
23340238 TTGGATGTGCTG-GAGCCTCGAACACAATCGGCAGACTAGGCCCTTGG-TCATGC-GAGACCCTC
126 TTGGTTGTG-TGAGAGCCTCG-GCACCACCGGCA-CCTAGGCCCTCGGAT-GTGCAG-GAGCCTC
** * * *
23340300 GGGGACCATTAGCAACCTAGGCA
186 GGACACCATCAGCAAACTAGGCT
* * * * * *
23340323 CTTGGTCGTGCGAAAGCCTCGGGCACCATC-AGCA-CTTGGGCGCTCGGATGTGCGGGAGCTTTA
1 CTTGGTCGTGTG-GAGCCTCGGGCACCATCGA-CACCTT-GGTGCT-TGATGTGCGGGAGCCTCA
* * * * * *
23340386 GACACCATCGGCAAACTAAGTCCTTGTTCTTGCGGGAGCCTCAGG-CACCATCGGCTACCTATGC
62 GACACCATCGGCAACCTAGGCCCTTGGTCGTGC-GGAGCCTC-GGACACCATCGGCTACCTAGGC
* * * **
23340450 CATTGGTTGTGTGAAAGCCTCAGGCACCACCGGCACCTGGGCGCTCGGATAAGCAGGAGCCTCGG
125 C-TTGGTTGTGTGAGAGCCTC-GGCACCACCGGCACCTAGGCCCTCGGATGTGCAGGAGCCTCGG
23340515 ACACCATCAGCAAACTAGGCT
188 ACACCATCAGCAAACTAGGCT
*
23340536 CTTGGTCGTGTAGGAGCCTCGGGCACCATCGACACCTTGGTGCTATGATGTGCGGGAGCCTCGGA
1 CTTGGTCGTGT-GGAGCCTCGGGCACCATCGACACCTTGGTGCT-TGATGTGCGGGAGCCTCAGA
** * * *
23340601 CACTGTTGGTAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGACACCATCGG-TAAACTAGGCCC
64 CACCATCGGCAACCTAGGCCCTTGGTCGTGC-GGAGCCTCGGACACCATCGGCT-ACCTAGG-CC
* * * * ** * ** ** *
23340665 TTGGTAGTG-CAGGAGCCTTGGGCACCAGCGATACCTCGGTACTATGATGTGCAGGAGCCTCGAA
126 TTGGTTGTGTGA-GAGCC-TCGGCACCACCGGCACCTAGGCCCTCGGATGTGCAGGAGCCTCGGA
*
23340729 CA-CATTCAGCAACCTAGGCT
189 CACCA-TCAGCAAACTAGGCT
* * * * * * *
23340749 CTTGGTCTTGTGGAGCCTCGAGCACCACCGACACCTGGGTGCTTGGATGTGTGGGAACCTCGGAC
1 CTTGGTCGTGTGGAGCCTCGGGCACCATCGACACCTTGGTGCTT-GATGTGCGGGAGCCTCAGAC
* * * *** * * * * *
23340814 ACCAACGACAACATAATACTTTTGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTGGGCGCTC
65 ACCATCGGCAACCTAGGCCCTTGGTCGTGCG-GAGCCTCGGACACCATCGGCTACCTAGGC-CTT
* * * * ** * * ** * **
23340878 GGATGTGCGGGAGCCCCGGACACCATCTAGAAACTAAACCCTTGG-TCGTGTGGGAGCCTC-GAG
128 GGTTGTGTGAGAGCCTCGG-CACCA-CCGGCACCTAGGCCCTCGGAT-GTGCAGGAGCCTCGGA-
* * * *
23340941 CACCATCGGTAAAATAGGCC
189 CACCATCAGCAAACTAGGCT
* *
23340961 CTTGGTCGTGTGAGAGCCTCGGGCACCATCGACACCTAGGTGCTTGGATGTGCGAGAGCCTCAGA
1 CTTGGTCGTGTG-GAGCCTCGGGCACCATCGACACCTTGGTGCTT-GATGTGCGGGAGCCTCAGA
* * * *
23341026 CACTATCGGCAAACTAGGCCCTTGGTCGTACGGAAGCCTCGGGCACCATCGG-TAACCTAGGCCC
64 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGG-AGCCTCGGACACCATCGGCT-ACCTAGG-CC
* ** * * **
23341090 TTAGTCATGTGAGAGCCTCGAGCACCATCGGCACCAAGGTGCTCGGATGTGCAGGAGCCTCGGAC
126 TTGGTTGTGTGAGAGCCTCG-GCACCACCGGCACCTAGGCCCTCGGATGTGCAGGAGCCTCGGAC
*
23341155 ACCATCAGAAAACTAGGC-
190 ACCATCAGCAAACTAGGCT
* * **
23341173 CATTGGTCTTGGGGGAGCCTCAAGCACCATCG
1 C-TTGGTCGT-GTGGAGCCTCGGGCACCATCG
23341205 GCTACCTAGG
Statistics
Matches: 671, Mismatches: 171, Indels: 80
0.73 0.19 0.09
Matches are distributed among these distances:
210 3 0.00
211 26 0.04
212 135 0.20
213 435 0.65
214 69 0.10
215 3 0.00
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.20
Consensus pattern (208 bp):
CTTGGTCGTGTGGAGCCTCGGGCACCATCGACACCTTGGTGCTTGATGTGCGGGAGCCTCAGACA
CCATCGGCAACCTAGGCCCTTGGTCGTGCGGAGCCTCGGACACCATCGGCTACCTAGGCCTTGGT
TGTGTGAGAGCCTCGGCACCACCGGCACCTAGGCCCTCGGATGTGCAGGAGCCTCGGACACCATC
AGCAAACTAGGCT
Found at i:23340926 original size:85 final size:85
Alignment explanation
Indices: 23340761--23340949 Score: 213
Period size: 85 Copynumber: 2.2 Consensus size: 85
23340751 TGGTCTTGTG
* * * * * *
23340761 GAGCCTCGAGCACCACCGACACCTGGGTGCTTGGATGTGTGGGAACCTCGGACACCAACGACAAC
1 GAGCCTCGAGCACCATCGGCACCTGGGCGCTCGGATGTGCGGGAACCCCGGACACCAACGACAAC
* *
23340826 ATAATACTTTTGTCGTGCGA
66 ATAATACCTTGGTCGTGCGA
* * *
23340846 GAGCCTCGGGCACCATCGGCACCTGGGCGCTCGGATGTGCGGGAGCCCCGGACACCATCTAGA-A
1 GAGCCTCGAGCACCATCGGCACCTGGGCGCTCGGATGTGCGGGAACCCCGGACACCAAC--GACA
* *
23340910 AC-TAA-ACCCTTGGTCGTGTGG
64 ACATAATA-CCTTGGTCGTGCGA
23340931 GAGCCTCGAGCACCATCGG
1 GAGCCTCGAGCACCATCGG
23340950 TAAAATAGGC
Statistics
Matches: 87, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
84 1 0.01
85 81 0.93
86 3 0.03
87 2 0.02
ACGTcount: A:0.22, C:0.31, G:0.30, T:0.17
Consensus pattern (85 bp):
GAGCCTCGAGCACCATCGGCACCTGGGCGCTCGGATGTGCGGGAACCCCGGACACCAACGACAAC
ATAATACCTTGGTCGTGCGA
Found at i:23341007 original size:85 final size:84
Alignment explanation
Indices: 23340917--23341323 Score: 294
Period size: 85 Copynumber: 4.8 Consensus size: 84
23340907 GAAACTAAAC
*
23340917 CCTTGGTCGTGTGGGAGCCTCGAGCACCATCGGTAAAATAGGCCCTTGGTCGTGTGAGAGCCTCG
1 CCTTGGTCGTGTGGGAGCCTCGAGCACCATCGGCAAAATAGGCCCTTGGTCGTG-GAGAGCCTCG
23340982 GGCACCATCGACACCTAGGT
65 GGCACCATCGACACCTAGGT
* * * * *
23341002 GCTTGGAT-GTGCGAGAGCCTC-AGACACTATCGGCAAACTAGGCCCTTGGTCGTACGGA-AGCC
1 CCTTGG-TCGTGTGGGAGCCTCGAG-CACCATCGGCAAAATAGGCCCTTGGTCGT--GGAGAGCC
*
23341064 TCGGGCACCATCGGTA-ACCTAGGC
62 TCGGGCACCATC-G-ACACCTAGGT
* * * ** ** * *
23341088 CCTTAGTCATGTGAGAGCCTCGAGCACCATCGGCACCA-AGGTGCTCGGAT-GTGCAGGAGCCTC
1 CCTTGGTCGTGTGGGAGCCTCGAGCACCATCGGCAAAATAGGCCCTTGG-TCGTGGA-GAGCCTC
* * *
23341151 GGACACCATCAGAAAACTAGG-
64 GGGCACCATC-GACACCTAGGT
* * * * ** * * *
23341172 CCATTGGTCTTGGGGGAGCCTCAAGCACCATCGGCTACCTAGGCCCTTGGTCGTGCAAAAGCATC
1 CC-TTGGTCGTGTGGGAGCCTCGAGCACCATCGGCAAAATAGGCCCTTGGTCGTG-GAGAGCCTC
*
23341237 GGGCACCATCGACACCTGGGT
64 GGGCACCATCGACACCTAGGT
* * * * *
23341258 TCTCAGAT-GTGTGGGAGCCTCG-GACACCATTGG-AAAACTAGGCCCTTGGTCGTACGAGAGCC
1 CCT-TGGTCGTGTGGGAGCCTCGAG-CACCATCGGCAAAA-TAGGCCCTTGGTCGT-GGAGAGCC
23341320 TCGG
62 TCGG
23341324 ATACAATCGG
Statistics
Matches: 247, Mismatches: 54, Indels: 42
0.72 0.16 0.12
Matches are distributed among these distances:
83 2 0.01
84 7 0.03
85 169 0.68
86 64 0.26
87 5 0.02
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.19
Consensus pattern (84 bp):
CCTTGGTCGTGTGGGAGCCTCGAGCACCATCGGCAAAATAGGCCCTTGGTCGTGGAGAGCCTCGG
GCACCATCGACACCTAGGT
Found at i:23341319 original size:128 final size:128
Alignment explanation
Indices: 23340185--23341459 Score: 687
Period size: 128 Copynumber: 10.0 Consensus size: 128
23340175 CACCGTAGGC
* * * * * *
23340185 AACCTAGGCCCTTGGTCGTGTGAGATCCTCGGGAACCATCGGCACCTAGGTGCTTGGATGTGCTG
1 AACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGACACCTAGGTGCTCGGATGTGCGG
* * * * * * * * * * * ** *
23340250 GAGCCTCGAACACAATCGGCAGACTAGGCCCTTGGTCATGCGAGACCCTCGGGGACCATTAGC
66 GAGCCTCGGACACCATCAGAAAACTAGGCCCTTGGTCGTACGGGAGCCTCGAGCACCATCGGT
* * * * *
23340313 AACCTAGGCACTTGGTCGTGCGAAAGCCTCGGGCACCATC-AGCACTTGGGCGCTCGGATGTGCG
1 AACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGA-CACCTAGGTGCTCGGATGTGCG
* ** * * * * * * *
23340377 GGAGCTTTAGACACCATCGGCAAACTAAGTCCTTGTTCTTGCGGGAGCCTC-AGGCACCATCGGC
65 GGAGCCTCGGACACCATCAGAAAACTAGGCCCTTGGTCGTACGGGAGCCTCGA-GCACCATCGG-
23340441 T
128 T
* * * * * * * * * * ** *
23340442 -ACCTATGCCATTGGTTGTGTGAAAGCCTCAGGCACCACCGGCACCTGGGCGCTCGGATAAGCAG
1 AACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGACACCTAGGTGCTCGGATGTGCGG
* * *** *
23340506 GAGCCTCGGACACCATCAGCAAACTAGGCTCTTGGTCGTGTAGGAGCCTCGGGCACCATC-G-
66 GAGCCTCGGACACCATCAGAAAACTAGGCCCTTGGTCGTACGGGAGCCTCGAGCACCATCGGT
* ** * * * ** * ** *
23340567 ACACCTTGGTGCTATGAT-GTGCGGGAGCCTCGGACACTGTTGGTA-ACCTAGGCCCTTGG-TCG
1 A-ACCTAGGCCCT-TGGTCGTGCGAGAGCCTCGGGCAC-CATCG-ACACCTAGGTGCTCGGAT-G
* * * * * * * * *
23340629 TGCAGGAGCCTCGGACACCATCGGTAAACTAGGCCCTTGGTAGTGCAGGAGCCTTGGGCACCAGC
61 TGCGGGAGCCTCGGACACCATCAGAAAACTAGGCCCTTGGTCGTACGGGAGCCTCGAGCACCATC
*
23340694 GAT
126 GGT
* ** * ** *
23340697 -ACCTCGGTACTATGAT-GTGC-AGGAGCCTCGAACA-CATTC-AGCAACCTAGGCT-CTTGG-T
1 AACCTAGGCCCT-TGGTCGTGCGA-GAGCCTCGGGCACCA-TCGA-C-ACCTAGG-TGCTCGGAT
* * * * * * ** ** *
23340755 CTTG-TGGAGCCTC-GAGCACCA-CCGACACCTGGGTGCTTGGAT-GTGTGGGAACCTCG-GACA
60 -GTGCGGGAGCCTCGGA-CACCATCAGAAAACTAGGCCCTTGG-TCGTACGGGAGCCTCGAG-CA
* **
23340815 CCAACGAC
121 CCATCGGT
* *** * * * * *
23340823 AACATAATACTTTTGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTGGGCGCTCGGATGTGCGG
1 AACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGACACCTAGGTGCTCGGATGTGCGG
* ** **
23340888 GAGCCCCGGACACCATCTAG-AAACTAAACCCTTGGTCGTGTGGGAGCCTCGAGCACCATCGGT
66 GAGCCTCGGACACCATC-AGAAAACTAGGCCCTTGGTCGTACGGGAGCCTCGAGCACCATCGGT
** * * *
23340951 AAAATAGGCCCTTGGTCGTGTGAGAGCCTCGGGCACCATCGACACCTAGGTGCTTGGATGTGCGA
1 AACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGACACCTAGGTGCTCGGATGTGCGG
* * * * * *
23341016 GAGCCTCAGACACTATCGGCAAACTAGGCCCTTGGTCGTACGGAAGCCTCGGGCACCATCGGT
66 GAGCCTCGGACACCATCAGAAAACTAGGCCCTTGGTCGTACGGGAGCCTCGAGCACCATCGGT
* * * * * * *
23341079 AACCTAGGCCCTTAGTCATGTGAGAGCCTCGAGCACCATCGGCACCAAGGTGCTCGGATGTGCAG
1 AACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGACACCTAGGTGCTCGGATGTGCGG
* * ** *
23341144 GAGCCTCGGACACCATCAGAAAACTAGGCCATTGGTCTTGGGGGAGCCTCAAGCACCATCGGCT
66 GAGCCTCGGACACCATCAGAAAACTAGGCCCTTGGTCGTACGGGAGCCTCGAGCACCATCGG-T
* * * * * * *
23341208 -ACCTAGGCCCTTGGTCGTGCAAAAGCATCGGGCACCATCGACACCTGGGTTCTCAGATGTGTGG
1 AACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGACACCTAGGTGCTCGGATGTGCGG
** * * *
23341272 GAGCCTCGGACACCATTGGAAAACTAGGCCCTTGGTCGTACGAGAGCCTCG-GATACAATCGG-
66 GAGCCTCGGACACCATCAGAAAACTAGGCCCTTGGTCGTACGGGAGCCTCGAG-CACCATCGGT
* * ** * * * * * *
23341334 CACCTCGGTGC-TGTTATGTGCGGGAGCCTCGAGCACCA-CTGACACCTTGGTG-TTGGATGTGC
1 AACCTAGGCCCTTGGT-CGTGCGAGAGCCTCGGGCACCATC-GACACCTAGGTGCTCGGATGTGC
* * * * * * *
23341396 GGGAACCTCGGACAGCATCAGCAACCTAGGCCCTTGGTCGTCCGAGAGCCTCGGGCACCATCGG
64 GGGAGCCTCGGACACCATCAGAAAACTAGGCCCTTGGTCGTACGGGAGCCTCGAGCACCATCGG
23341460 CACCTGGGTG
Statistics
Matches: 880, Mismatches: 225, Indels: 86
0.74 0.19 0.07
Matches are distributed among these distances:
125 2 0.00
126 110 0.12
127 108 0.12
128 657 0.75
129 3 0.00
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.20
Consensus pattern (128 bp):
AACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGACACCTAGGTGCTCGGATGTGCGG
GAGCCTCGGACACCATCAGAAAACTAGGCCCTTGGTCGTACGGGAGCCTCGAGCACCATCGGT
Found at i:23341617 original size:43 final size:42
Alignment explanation
Indices: 23341525--23341672 Score: 129
Period size: 43 Copynumber: 3.5 Consensus size: 42
23341515 TGGTCGTACG
* * * * * *
23341525 GGAGCCTTGGGCACCATCGGCACCTTGGTGGCTCGAATATGCG
1 GGAGCCTCGAGCAGCATCGGAACCTTGGTGGCTCG-ATGTGCA
*
23341568 GGAGCCTCGAGCAGCATCGGTACCTTGGTGGCTCAGATGTGCA
1 GGAGCCTCGAGCAGCATCGGAACCTTGGTGGCTC-GATGTGCA
* * * * *
23341611 GAAGCCTC-AGACACCATCGGCAACCTTAGT-GATCGGATGGGCA
1 GGAGCCTCGAG-CAGCATCGG-AACCTTGGTGGCTC-GATGTGCA
23341654 GGAGCCTCGAGCAGCATCG
1 GGAGCCTCGAGCAGCATCG
23341673 ACAACTATGG
Statistics
Matches: 86, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
42 2 0.02
43 74 0.86
44 10 0.12
ACGTcount: A:0.21, C:0.28, G:0.33, T:0.18
Consensus pattern (42 bp):
GGAGCCTCGAGCAGCATCGGAACCTTGGTGGCTCGATGTGCA
Found at i:23344141 original size:29 final size:29
Alignment explanation
Indices: 23344099--23344155 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
23344089 AGCCCTGTGG
*
23344099 CAAGTGGTATCTGAGCTATTGGTTCGAAC
1 CAAGTGATATCTGAGCTATTGGTTCGAAC
*
23344128 CAAGTGATATCTGAGTTATTGGTTCGAA
1 CAAGTGATATCTGAGCTATTGGTTCGAA
23344156 GGCACCGTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.33
Consensus pattern (29 bp):
CAAGTGATATCTGAGCTATTGGTTCGAAC
Found at i:23350433 original size:36 final size:35
Alignment explanation
Indices: 23350393--23350464 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 35
23350383 CATCTCCGGA
23350393 GCTTGGCAAATAAGGAAAGTGATCTTCTGAAGATAT
1 GCTTGGCAAATAAGGAAAGTGATCTTC-GAAGATAT
* * *
23350429 GCTTGGCAGATATGGAAGGTGATCTTCGAAGATAT
1 GCTTGGCAAATAAGGAAAGTGATCTTCGAAGATAT
23350464 G
1 G
23350465 TGATCCTAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 9 0.27
36 24 0.73
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.28
Consensus pattern (35 bp):
GCTTGGCAAATAAGGAAAGTGATCTTCGAAGATAT
Found at i:23355568 original size:36 final size:35
Alignment explanation
Indices: 23355521--23355592 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 35
23355511 CATCTCCGGA
23355521 GCTTGGCAAATAAGGAAAGTGATCTTCTGAAGATAT
1 GCTTGGCAAATAAGGAAAGTGATCTT-TGAAGATAT
* * *
23355557 GCTTGGCAAATATGGAAGGTGATCTTTGTAGATAT
1 GCTTGGCAAATAAGGAAAGTGATCTTTGAAGATAT
23355592 G
1 G
23355593 TGATCCTAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 9 0.27
36 24 0.73
ACGTcount: A:0.32, C:0.10, G:0.28, T:0.31
Consensus pattern (35 bp):
GCTTGGCAAATAAGGAAAGTGATCTTTGAAGATAT
Found at i:23363621 original size:44 final size:43
Alignment explanation
Indices: 23363535--23363621 Score: 97
Period size: 44 Copynumber: 2.0 Consensus size: 43
23363525 CGAGAGCCTT
* * *
23363535 GAGCACCATCGAGCACCTTGGTGCCTCAGATGTGAAGGAGCGTC
1 GAGCACCATCGAGCACATTGGTGCCCCAGATGT-AAGAAGCGTC
23363579 GAGCACCATCGAGCACATTGG-GCCCCTATCGATGT-AGAAGCGT
1 GAGCACCATCGAGCACATTGGTGCCCC-A--GATGTAAGAAGCGT
23363622 TGGGCTAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
43 4 0.11
44 28 0.76
46 5 0.14
ACGTcount: A:0.24, C:0.28, G:0.30, T:0.18
Consensus pattern (43 bp):
GAGCACCATCGAGCACATTGGTGCCCCAGATGTAAGAAGCGTC
Found at i:23364004 original size:75 final size:75
Alignment explanation
Indices: 23363884--23364046 Score: 240
Period size: 75 Copynumber: 2.2 Consensus size: 75
23363874 AACGATGCAA
* * *
23363884 CGAGTCCCTCTCTAATCCCAAAGGTAGAATTTGAATATCGTTACATGTGATGTACCCAACAATGA
1 CGAGTCCCTCCCCAATCCCAAAGGTAGAATTTGAATATCGTTACATGTGACGTACCCAACAATGA
*
23363949 ACGAATCGTCC
66 ACGAATCAT-C
23363960 CG-GTCCCTCCCCAATCCCAAAGGTAGAATTT-ATATATCGTTACATGTGACGTACCCAACAATG
1 CGAGTCCCTCCCCAATCCCAAAGGTAGAATTTGA-ATATCGTTACATGTGACGTACCCAACAATG
* *
23364023 GATGAATCATC
65 AACGAATCATC
23364034 CGAGTCCCTCCCC
1 CGAGTCCCTCCCC
23364047 TTGGTCGTGC
Statistics
Matches: 79, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
74 4 0.05
75 73 0.92
76 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (75 bp):
CGAGTCCCTCCCCAATCCCAAAGGTAGAATTTGAATATCGTTACATGTGACGTACCCAACAATGA
ACGAATCATC
Found at i:23364106 original size:43 final size:43
Alignment explanation
Indices: 23364043--23364166 Score: 167
Period size: 43 Copynumber: 2.9 Consensus size: 43
23364033 CCGAGTCCCT
*
23364043 CCCCTTGGTCGTGCGTGAGCCTCGGGCACCATCGGTAACCTAGG
1 CCCC-TGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGG
* * *
23364087 CCCCTGGTCGTGTGGGAGCCTCAGGCACCATCGGTAACCTAGG
1 CCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGG
* * * *
23364130 CCCTTGGTCGTGCGAAAACCTCGGACACCATCGGTAA
1 CCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAA
23364167 AATAGACCAT
Statistics
Matches: 70, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
43 66 0.94
44 4 0.06
ACGTcount: A:0.18, C:0.33, G:0.30, T:0.19
Consensus pattern (43 bp):
CCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGG
Found at i:23364201 original size:86 final size:86
Alignment explanation
Indices: 23364044--23364204 Score: 196
Period size: 86 Copynumber: 1.9 Consensus size: 86
23364034 CGAGTCCCTC
** * * ** * * ***
23364044 CCCTTGGTCGTGCGTGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGTGGGAGCCTC
1 CCCTTGGTCGTGCGAAAACCTCGGACACCATCGGTAAAATAGACCACTGGTCGTGCAAGAGCCTC
*
23364109 AGGCACCATCGGTAACCTAGG
66 AAGCACCATCGGTAACCTAGG
* *
23364130 CCCTTGGTCGTGCGAAAACCTCGGACACCATCGGTAAAATAGACCATTGGTCGTGCAAGAGCTTC
1 CCCTTGGTCGTGCGAAAACCTCGGACACCATCGGTAAAATAGACCACTGGTCGTGCAAGAGCCTC
23364195 AAGCACCATC
66 AAGCACCATC
23364205 AGCACCTTGG
Statistics
Matches: 61, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
86 61 1.00
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (86 bp):
CCCTTGGTCGTGCGAAAACCTCGGACACCATCGGTAAAATAGACCACTGGTCGTGCAAGAGCCTC
AAGCACCATCGGTAACCTAGG
Found at i:23366202 original size:22 final size:23
Alignment explanation
Indices: 23366159--23366202 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 23
23366149 TGTGTAGGTT
* *
23366159 TGTATACAAGATCATCTCAAAGG
1 TGTATACAAGATCAGCTAAAAGG
*
23366182 TGTATGCAA-ATCAGCTAAAAG
1 TGTATACAAGATCAGCTAAAAG
23366203 CGATCCTACC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.41, C:0.16, G:0.18, T:0.25
Consensus pattern (23 bp):
TGTATACAAGATCAGCTAAAAGG
Found at i:23368913 original size:24 final size:24
Alignment explanation
Indices: 23368882--23368941 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
23368872 TTAGGTTCTT
** *
23368882 GGCGGTGCTCCGGTGATCCATCTC
1 GGCGGTGCTCCGGCAAACCATCTC
* * *
23368906 GGTGGTGCTTCGGCAAACCGTCTC
1 GGCGGTGCTCCGGCAAACCATCTC
23368930 GGCGGTGCTCCG
1 GGCGGTGCTCCG
23368942 ACGTGCCATT
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.08, C:0.32, G:0.37, T:0.23
Consensus pattern (24 bp):
GGCGGTGCTCCGGCAAACCATCTC
Found at i:23369072 original size:43 final size:43
Alignment explanation
Indices: 23368962--23370577 Score: 423
Period size: 43 Copynumber: 37.8 Consensus size: 43
23368952 TCGGTAGCAT
* * *
23368962 AGGCCCTTGGTCGTGCAGGAGCCTCAGG-TACCATCGGC-ACCT
1 AGGCCCTTGGTCGTGCGGGAGCCTC-GGACACCATCGGCAACCA
* ** *
23369004 TGGTGCTAGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCA
1 AGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCA
* * *
23369047 AGGCCCTTGGTCGTACGGGATCCTCGGGA-ACCATCGGC-ACCT
1 AGGCCCTTGGTCGTGCGGGAGCCTC-GGACACCATCGGCAACCA
** * ** **
23369089 AGGAGCTTGGAT-GTGCGGGAGCCTCGGACACTATCAACAAATA
1 AGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCA
* * *
23369132 AGGCCCTTGGTCGTGCGGGATCGTCAGG-CACCATCGGC-ACCT
1 AGGCCCTTGGTCGTGCGGGAGCCTC-GGACACCATCGGCAACCA
* * * * * * * * *
23369174 GGGCGCTCGGAT-GTGTGGGAGCCTCAGACACTATCGGTAAACT
1 AGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCA
* * * **
23369217 AGGCCCTTAGTCTTGCGGGAGCCTCGGGCACCATCGGCTGCCA
1 AGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCA
* ** * **
23369260 AGGCCCTTGGTCGTGTGAAAGCCTCGGGA-ACCATCGTC-ACTT
1 AGGCCCTTGGTCGTGCGGGAGCCTC-GGACACCATCGGCAACCA
* ** * ** * * *
23369302 GGGTGCTCGGAT-GTGCGGGAGCCTCAAACACCATCGGTAAACT
1 AGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCA
* * *
23369345 AGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCTACTC-
1 AGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAC-CA
** * * ** * *
23369388 -GGTGCTATGAT-GTGCGGAAGCCTCGGACACTGTCGGTAACCT
1 AGGCCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCA
* * * * *
23369430 AGGCCCTTGGTCGTGTGGGAGTCTCGGGCACCATCGACAGCTC-
1 AGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAAC-CA
** * * * * ** * *
23369473 -GGTGCTATGAT-GTGCGTGAGGCTCAGACACTGTCGCCAACCT
1 AGGCCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCA
* * * ** * *
23369515 AGGCCCTAGATCGTACGGGAGCCTC-GAGCATTATTGAC-A-CA
1 AGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGCAACCA
* ** * * * *
23369556 TTGGTGCTTGGAT-GTACGAGAACCTCGGACACCATAGGCAA-CA
1 -AGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCA
* * * * * *
23369599 TAGGCCCGTGGTTGTACGAGAGCCTCGGGCACCATCGGC-ACCT
1 -AGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCA
* * * * * *
23369642 GGGCCCATAGAT-GTGCGGGAGGCTCGGACACTATCGGCAAACTA
1 AGGCCC-TTGGTCGTGCGGGAGCCTCGGACACCATCGGC-AACCA
* * ** * * *
23369686 A-GCTCTTGGTCGTGCGAGAGCCTCGGGGACCATCAGCAAACT
1 AGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCA
* ** * **
23369728 AGGTCCTTGGTCGTGCAAGAGCCTCGGGCACCA-CTGGC-ACTT
1 AGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATC-GGCAACCA
* ** *
23369770 TGGTGGCTTGGAT-GTGCGGGAG-CTCGGACACCATCGGCCA-CA
1 AGG-CCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCA
* * * * *
23369812 TAGGCCCTTGATCGTGCGAGAGCCTCGGGCACCATTGG-GACC-
1 -AGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCA
* * * * * * *
23369854 TGGGCGTTCAGAT-GTTCGGGAGCGC-CAGACACCATCGGCAAACA
1 AGGCCCTT--GGTCGTGCGGGAGC-CTCGGACACCATCGGCAACCA
** * * *
23369898 AAACCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAA-CT
1 AGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCA
*
23369940 AGGCCCTTGGTCGTGCGGGAGCCTC-GAGCACCATCGGCAA-AA
1 AGGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGCAACCA
* * * * * *
23369982 TAGGCCCTTGGTTGTGTGAGAGCCTCAGG-CACTATTGGC-ACCT
1 -AGGCCCTTGGTCGTGCGGGAGCCTC-GGACACCATCGGCAACCA
** * * * *
23370025 AGGTGCTTGGAT-GTGCAGGATCCTCGGACACCATCGGCAAACT
1 AGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCA
* * *
23370068 AGGCCCTTGGTCCTACGGTCATGTGAGAGCCTCGAACACCATCGGC-ACCT
1 AGGCCCTTGGTCGT---G-C--G-G-GAGCCTCGGACACCATCGGCAACCA
** * * ** * *
23370118 AGGTACTCGGAT-GTGCGGGAGCCTTGGACACCATCGAAAAACT
1 AGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCA
* * * *
23370161 AGGCCCTTGGTCTTG-GGAGAGCCTCGGGCACCATCGGCTACCT
1 AGGCCCTTGGTCGTGCGG-GAGCCTCGGACACCATCGGCAACCA
* ** * * *
23370204 AGGCCCTTGGTCGTGTGAAAGCGTCGGGCACCATCGGC-ACCT
1 AGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCA
* * * * * *
23370246 AGGCGCTTGGAT-GTGCGAGAGCCTTGGACACCATCGACAAACT
1 AGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCA
* * * * * * * *
23370289 AGGCCCTTGGTCATTCAGGAGCCTAGGGCATCATCAGC-ACCT
1 AGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCA
* ** * * * * *
23370331 TGGTGCTATGAT-GTCCGGGAGCCTC-GAGCACCACCGAC-ACCT
1 AGGCCCT-TGGTCGTGCGGGAGCCTCGGA-CACCATCGGCAACCA
* ** * * * * * *
23370373 TGG-TGTTGGAT-GGGCGGGAACCTTGGACAGCATCAGCAACCT
1 AGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCA
* * * * *
23370415 AGGCCCTTGGTCGTACGAGAGCCTTGGGCACCATTGGC-ACC-
1 AGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCA
* * * * *
23370456 TGGACGCTCGGAT-GTGCGGGAGCCT-TGATCACCATCGGCAAACTA
1 AGG-CCCTTGG-TCGTGCGGGAGCCTCGGA-CACCATCGGC-AACCA
* ** * *
23370501 A-GCCCTTGGTCGTGCAGGAGCCTCGGGGACCATCAGCAA-AA
1 AGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCA
* * * *
23370542 TAGGCTCTTAGTCGTGCGAGAGCCTCGGGCACCATC
1 -AGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATC
23370578 AGCACCTTGG
Statistics
Matches: 1124, Mismatches: 351, Indels: 197
0.67 0.21 0.12
Matches are distributed among these distances:
40 2 0.00
41 41 0.04
42 461 0.41
43 563 0.50
44 21 0.02
45 1 0.00
46 2 0.00
47 2 0.00
50 12 0.01
51 19 0.02
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.20
Consensus pattern (43 bp):
AGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCA
Found at i:23369105 original size:85 final size:85
Alignment explanation
Indices: 23368962--23369254 Score: 352
Period size: 85 Copynumber: 3.4 Consensus size: 85
23368952 TCGGTAGCAT
* * * *
23368962 AGGCCCTTGGTCGTGCAGGAGCCTCAGGTACCATCGGCACCTTGGTGCTAGGATGTGCGGGAGCC
1 AGGCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGCACCTAGGAGCTAGGATGTGCGGGAGCC
* *
23369027 TCGGACACCATCGGCAACCA
66 TCGGACACTATCGGCAAACA
* * * * *
23369047 AGGCCCTTGGTCGTACGGGATCCTCGGGAACCATCGGCACCTAGGAGCTTGGATGTGCGGGAGCC
1 AGGCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGCACCTAGGAGCTAGGATGTGCGGGAGCC
** *
23369112 TCGGACACTATCAACAAATA
66 TCGGACACTATCGGCAAACA
* * * * * *
23369132 AGGCCCTTGGTCGTGCGGGATCGTCAGGCACCATCGGCACCTGGGCGCTCGGATGTGTGGGAGCC
1 AGGCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGCACCTAGGAGCTAGGATGTGCGGGAGCC
* * *
23369197 TCAGACACTATCGGTAAACT
66 TCGGACACTATCGGCAAACA
* * *
23369217 AGGCCCTTAGTCTTGCGGGAGCCTCGGGCACCATCGGC
1 AGGCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGC
23369255 TGCCAAGGCC
Statistics
Matches: 176, Mismatches: 32, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
85 176 1.00
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.19
Consensus pattern (85 bp):
AGGCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGCACCTAGGAGCTAGGATGTGCGGGAGCC
TCGGACACTATCGGCAAACA
Found at i:23369238 original size:128 final size:128
Alignment explanation
Indices: 23369100--23369379 Score: 337
Period size: 128 Copynumber: 2.2 Consensus size: 128
23369090 GGAGCTTGGA
* * ** * * *
23369100 TGTGCGGGAGCCTCGGACACTATCAACAAATAAGGCCCTTGGTCGTGCGGGATCGTCAGGCACCA
1 TGTGCGGGAGCCTCGGACACCATCAACAAACAAGGCCCTTGGTCGTGCGAAAGCCTCAGGAACCA
* * *
23369165 TCGGCACCTGGGCGCTCGGATGTGTGGGAGCCTCAGACACTATCGGTAAACTAGGCCCTTAGT
66 TCGGCACCTGGGCGCTCGGATGTGCGGGAGCCTCAAACACCATCGGTAAACTAGGCCCTTAGT
* ** *** * *
23369228 CT-TGCGGGAGCCTCGGGCACCATCGGCTGCCAAGGCCCTTGGTCGTGTGAAAGCCTCGGGAACC
1 -TGTGCGGGAGCCTCGGACACCATCAACAAACAAGGCCCTTGGTCGTGCGAAAGCCTCAGGAACC
* * * *
23369292 ATCGTCACTTGGGTGCTCGGATGTGCGGGAGCCTCAAACACCATCGGTAAACTAGGCCCTTGGT
65 ATCGGCACCTGGGCGCTCGGATGTGCGGGAGCCTCAAACACCATCGGTAAACTAGGCCCTTAGT
*
23369356 TGTGCGGGAGCCTCGGGCACCATC
1 TGTGCGGGAGCCTCGGACACCATC
23369380 GGCTACTCGG
Statistics
Matches: 128, Mismatches: 22, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
127 1 0.01
128 126 0.98
129 1 0.01
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.20
Consensus pattern (128 bp):
TGTGCGGGAGCCTCGGACACCATCAACAAACAAGGCCCTTGGTCGTGCGAAAGCCTCAGGAACCA
TCGGCACCTGGGCGCTCGGATGTGCGGGAGCCTCAAACACCATCGGTAAACTAGGCCCTTAGT
Found at i:23369319 original size:85 final size:85
Alignment explanation
Indices: 23369230--23369719 Score: 326
Period size: 85 Copynumber: 5.8 Consensus size: 85
23369220 CCCTTAGTCT
* * * ** *
23369230 TGCGGGAGCCTCGGGCACCATCGGCT-GCCAAGGCCCTTGGTCGTGTGAAAGCCTCGGGAACCAT
1 TGCGGGAGCCTCGGACACCATCGG-TAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCAT
* * *
23369294 CGTC-ACTTGGGTGCTCGGATG
65 CGGCTAC-TCGGTGCTAGGATG
** * * *
23369315 TGCGGGAGCCTCAAACACCATCGGTAAACTAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATC
1 TGCGGGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATC
*
23369380 GGCTACTCGGTGCTATGATG
66 GGCTACTCGGTGCTAGGATG
* ** *
23369400 TGCGGAAGCCTCGGACACTGTCGGTAACCTAGGCCCTTGGTCGTGTGGGAGTCTCGGGCACCATC
1 TGCGGGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATC
* *
23369465 GAC-AGCTCGGTGCTATGATG
66 GGCTA-CTCGGTGCTAGGATG
* * * ** ** * * ** * ** *
23369485 TGCGTGAGGCTCAGACACTGTCGCCAACCTAGGCCCTAGATCGTACGGGAGCCTCGAGCATTATT
1 TGCGGGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATC
* * *
23369550 GAC-ACATTGGTGCTTGGATG
66 GGCTAC-TCGGTGCTAGGATG
* * * * * * * * ** *
23369570 TACGAGAACCTCGGACACCATAGGCAACATAGGCCCGTGGTTGTACGAGAGCCTCGGGCACCATC
1 TGCGGGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATC
* **
23369635 GGC-ACCTGGGCCCATA-GATG
66 GGCTA-CTCGGTGC-TAGGATG
* * * * * * * * *
23369655 TGCGGGAGGCTCGGACACTATCGGCAAACTAAGCTCTTGGTCGTGCGAGAGCCTCGGGGACCATC
1 TGCGGGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATC
23369720 AGCAAACTAG
Statistics
Matches: 318, Mismatches: 81, Indels: 12
0.77 0.20 0.03
Matches are distributed among these distances:
84 3 0.01
85 311 0.98
86 4 0.01
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.20
Consensus pattern (85 bp):
TGCGGGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATC
GGCTACTCGGTGCTAGGATG
Found at i:23369426 original size:213 final size:213
Alignment explanation
Indices: 23369016--23369465 Score: 544
Period size: 213 Copynumber: 2.1 Consensus size: 213
23369006 GTGCTAGGAT
* ** *
23369016 GTGCGGGAGCCTCGGACACCATCGGCAACCAAGGCCCTTGGTCGTACGGGATCCTCGGGAACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCAAGGCCCTTGGTCGTACGAAAGCCTCGGGAACCAT
* ** *
23369081 CGGCACCTAGGAGCTTGGATGTGCGGGAGCCTCGGACACTATCAACAAATAAGGCCCTTGGTCGT
66 CGGCACCTAGGAGCTCGGATGTGCGGGAGCCTCAAACACCATCAACAAATAAGGCCCTTGGTCGT
* * * * * *
23369146 GCGGGATCGTCAGGCACCATCGGCACCTGGGCGCTCGGATGTGTGGGAGCCTCAGACACTATCGG
131 GCGGGAGCCTCAGGCACCATCGGCACCTCGGCGCTAGGATGTGCGGAAGCCTCAGACACTATCGG
23369211 TAAACTAGGCCCTTAGTC
196 TAAACTAGGCCCTTAGTC
* ** **
23369229 TTGCGGGAGCCTCGGGCACCATCGGCTGCCAAGGCCCTTGGTCGTGTGAAAGCCTCGGGAACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCAAGGCCCTTGGTCGTACGAAAGCCTCGGGAACCAT
* * * * *** *
23369294 CGTCACTTGGGTGCTCGGATGTGCGGGAGCCTCAAACACCATCGGTAAACT-AGGCCCTTGGTTG
66 CGGCACCTAGGAGCTCGGATGTGCGGGAGCCTCAAACACCATCAACAAA-TAAGGCCCTTGGTCG
* * * * *
23369358 TGCGGGAGCCTCGGGCACCATCGGCTA-CTCGGTGCTATGATGTGCGGAAGCCTCGGACACTGTC
130 TGCGGGAGCCTCAGGCACCATCGGC-ACCTCGGCGCTAGGATGTGCGGAAGCCTCAGACACTATC
* *
23369422 GGTAACCTAGGCCCTTGGTC
194 GGTAAACTAGGCCCTTAGTC
* *
23369442 GTGTGGGAGTCTCGGGCACCATCG
1 GTGCGGGAGCCTCGGGCACCATCG
23369466 ACAGCTCGGT
Statistics
Matches: 198, Mismatches: 37, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
213 196 0.99
214 2 0.01
ACGTcount: A:0.18, C:0.29, G:0.33, T:0.20
Consensus pattern (213 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCAAGGCCCTTGGTCGTACGAAAGCCTCGGGAACCAT
CGGCACCTAGGAGCTCGGATGTGCGGGAGCCTCAAACACCATCAACAAATAAGGCCCTTGGTCGT
GCGGGAGCCTCAGGCACCATCGGCACCTCGGCGCTAGGATGTGCGGAAGCCTCAGACACTATCGG
TAAACTAGGCCCTTAGTC
Found at i:23369450 original size:128 final size:127
Alignment explanation
Indices: 23369161--23369450 Score: 284
Period size: 128 Copynumber: 2.3 Consensus size: 127
23369151 ATCGTCAGGC
** * * * *
23369161 ACCATCGGCACCTGGGCGCTCGGATGTGTGGGAGCCTCAGACACTATCGGTAAACTAGGCCCTTA
1 ACCATCGTAACCTAGGCCCTCGGATGTGTGGGAGCCTCAAACACCATCGGTAAACTAGGCCCTTA
* * *
23369226 GTCTTGCGGGAGCCTCGGGCACCATCGGCTGCCAAGGCCCTTGGTCGTGTGAAAGCCTCGGGA
66 GTCTTGCGGGAGCCTCGGGCACCATCGGCTACC-AGGCCCTTGATCGTGCGAAAGCCTCGGGA
* * * ** * *
23369289 ACCATCGTCACTTGGGTGCTCGGATGTGCGGGAGCCTCAAACACCATCGGTAAACTAGGCCCTTG
1 ACCATCGTAACCTAGGCCCTCGGATGTGTGGGAGCCTCAAACACCATCGGTAAACTAGGCCCTTA
** *
23369354 GT-TGTGCGGGAGCCTCGGGCACCATCGGCTACTC-GGTGCTATGAT-GTGCGGAAGCCTC-GGA
66 GTCT-TGCGGGAGCCTCGGGCACCATCGGCTAC-CAGGCCCT-TGATCGTGCGAAAGCCTCGGGA
** *
23369415 CACTGTCGGTAACCTAGGCCCTTGG-TCGTGTGGGAG
1 -ACCATC-GTAACCTAGGCCCTCGGAT-GTGTGGGAG
23369451 TCTCGGGCAC
Statistics
Matches: 134, Mismatches: 22, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
126 3 0.02
127 21 0.16
128 109 0.81
129 1 0.01
ACGTcount: A:0.18, C:0.28, G:0.33, T:0.21
Consensus pattern (127 bp):
ACCATCGTAACCTAGGCCCTCGGATGTGTGGGAGCCTCAAACACCATCGGTAAACTAGGCCCTTA
GTCTTGCGGGAGCCTCGGGCACCATCGGCTACCAGGCCCTTGATCGTGCGAAAGCCTCGGGA
Found at i:23369500 original size:298 final size:298
Alignment explanation
Indices: 23368962--23369540 Score: 686
Period size: 298 Copynumber: 1.9 Consensus size: 298
23368952 TCGGTAGCAT
* *
23368962 AGGCCCTTGGTCGTGCAGGAGCCTCAGGTACCATCGGCACCTTGGTGCTAGGATGTGCGGGAGCC
1 AGGCCCTTGGTCGTGCAGAAGCCTCAGGAACCATCGGCACCTTGGTGCTAGGATGTGCGGGAGCC
** * *
23369027 TCGGACACCATCGGCAACCAAGGCCCTTGGTCGTACGGGATCCTCGGGAACCATCGGCACCTAGG
66 TCAAACACCATCGGCAAACAAGGCCCTTGGTCGTACGGGAGCCTCGGGAACCATCGGCACCTAGG
*
23369092 AGCTTGGATGTGCGGGAGCCTCGGACACTATCAACAAATAAGGCCCTTGGTCGTGCGGGATCGTC
131 AGCTTGGATGTGCGGAAGCCTCGGACACTATCAACAAATAAGGCCCTTGGTCGTGCGGGATCGTC
* * * * **
23369157 AGGCACCATCGGCACCTGGGCGCTCGGATGTGTGGGAGCCTCAGACACTATCGGTAAACTAGGCC
196 AGGCACCATCGACACCTCGGCGCTAGGATGTGCGGGAGCCTCAGACACTATCGCCAAACTAGGCC
* *
23369222 CTTAG-TCTTGCGGGAGCCTCGGGCACCATCGGCTGCCA
261 C-TAGATCGTACGGGAGCCTCGGGCACCATCGGCTGCCA
* * * *
23369260 AGGCCCTTGGTCGTG-TGAAAGCCTCGGGAACCATCGTCA-CTTGGGTGCTCGGATGTGCGGGAG
1 AGGCCCTTGGTCGTGCAG-AAGCCTCAGGAACCATCGGCACCTT-GGTGCTAGGATGTGCGGGAG
* * * * *
23369323 CCTCAAACACCATCGGTAAACTAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATCGGCTA-CT
64 CCTCAAACACCATCGGCAAACAAGGCCCTTGGTCGTACGGGAGCCTCGGGAACCATCGGC-ACCT
* * * *** * *
23369387 CGGTGCTAT-GATGTGCGGAAGCCTCGGACACTGTCGGTAACCT-AGGCCCTTGGTCGTGTGGGA
128 AGGAGCT-TGGATGTGCGGAAGCCTCGGACACTATCAACAA-ATAAGGCCCTTGGTCGTGCGGGA
* * * * * * * *
23369450 GTC-TCGGGCACCATCGACAGCTCGGTGCTATGATGTGCGTGAGGCTCAGACACTGTCGCCAACC
191 -TCGTCAGGCACCATCGACACCTCGGCGCTAGGATGTGCGGGAGCCTCAGACACTATCGCCAAAC
23369514 TAGGCCCTAGATCGTACGGGAGCCTCG
255 TAGGCCCTAGATCGTACGGGAGCCTCG
23369541 AGCATTATTG
Statistics
Matches: 234, Mismatches: 40, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
297 7 0.03
298 222 0.95
299 5 0.02
ACGTcount: A:0.18, C:0.29, G:0.33, T:0.20
Consensus pattern (298 bp):
AGGCCCTTGGTCGTGCAGAAGCCTCAGGAACCATCGGCACCTTGGTGCTAGGATGTGCGGGAGCC
TCAAACACCATCGGCAAACAAGGCCCTTGGTCGTACGGGAGCCTCGGGAACCATCGGCACCTAGG
AGCTTGGATGTGCGGAAGCCTCGGACACTATCAACAAATAAGGCCCTTGGTCGTGCGGGATCGTC
AGGCACCATCGACACCTCGGCGCTAGGATGTGCGGGAGCCTCAGACACTATCGCCAAACTAGGCC
CTAGATCGTACGGGAGCCTCGGGCACCATCGGCTGCCA
Found at i:23369835 original size:213 final size:212
Alignment explanation
Indices: 23369533--23369972 Score: 535
Period size: 213 Copynumber: 2.1 Consensus size: 212
23369523 GATCGTACGG
** * * *
23369533 GAGCCTCGAGCATTATTGACACATTGGTGCTTGGATGTACGAGAACCTCGGACACCATAGGCAAC
1 GAGCCTCGAGCACCACTGGCACTTTGGTGCTTGGATGTACGAGAACCTCGGACACCATAGGCAAC
* *
23369598 ATAGGCCCGTGGTTGTACGAGAGCCTCGGGCACCATCGGCACCTGGGCCCAT-AGATGTGCGGGA
66 ATAGGCCCGTGATCGTACGAGAGCCTCGGGCACCATCGGCACCTGGG-CCATCAGATGTGCGGGA
* * * * * *
23369662 G-GCTCGGACACTATCGGCAAACTAAGCTCTTGGTCGTGCGAGAGCCTCGGGGACCATCAGCAAA
130 GCGC-CAGACACCATCGGCAAACAAAACCCTTGGTCGTGCGAGAGCCTCGGGCACCATC-GCAAA
*
23369726 CTAGGTCCTTGGTCGTGCAA
193 CTAGGCCCTTGGTCGTGCAA
* * * * * *
23369746 GAGCCTCGGGCACCACTGGCACTTTGGTGGCTTGGATGTGCG-GGAGCTCGGACACCATCGGCCA
1 GAGCCTCGAGCACCACTGGCACTTTGGT-GCTTGGATGTACGAGAACCTCGGACACCATAGGCAA
* * * * ** *
23369810 CATAGGCCCTTGATCGTGCGAGAGCCTCGGGCACCATTGGGACCTGGGCGTTCAGATGTTCGGGA
65 CATAGGCCCGTGATCGTACGAGAGCCTCGGGCACCATCGGCACCTGGGCCATCAGATGTGCGGGA
* **
23369875 GCGCCAGACACCATCGGCAAACAAAACCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACT
130 GCGCCAGACACCATCGGCAAACAAAACCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGCAAACT
**
23369940 AGGCCCTTGGTCGTGCGG
195 AGGCCCTTGGTCGTGCAA
23369958 GAGCCTCGAGCACCA
1 GAGCCTCGAGCACCA
23369973 TCGGCAAAAT
Statistics
Matches: 191, Mismatches: 33, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
212 36 0.19
213 141 0.74
214 14 0.07
ACGTcount: A:0.21, C:0.29, G:0.32, T:0.19
Consensus pattern (212 bp):
GAGCCTCGAGCACCACTGGCACTTTGGTGCTTGGATGTACGAGAACCTCGGACACCATAGGCAAC
ATAGGCCCGTGATCGTACGAGAGCCTCGGGCACCATCGGCACCTGGGCCATCAGATGTGCGGGAG
CGCCAGACACCATCGGCAAACAAAACCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGCAAACTA
GGCCCTTGGTCGTGCAA
Found at i:23369885 original size:85 final size:86
Alignment explanation
Indices: 23369714--23370194 Score: 294
Period size: 85 Copynumber: 5.6 Consensus size: 86
23369704 AGCCTCGGGG
* * * * *
23369714 ACCATCAGCAAAC-TAGGTCCTTGGTCGTGCAAGAGCCTCGGGCACCACTGGCACTTTGGTGGCT
1 ACCATCGGCAAACATAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATTGGCACTCTGGTGGCT
* * *
23369778 TGGATGTGCGGGAGCTCGGAC
66 TAGATGTGCGGGAGCCCAGAC
* * *
23369799 ACCATCGGC-CACATAGGCCCTTGATCGTGCGAGAGCCTCGGGCACCATTGGGAC-CT-G-GGCG
1 ACCATCGGCAAACATAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATTGGCACTCTGGTGGC-
*
23369860 TTCAGATGTTCGGGAGCGCCAGAC
65 TT-AGATGTGCGGGAGC-CCAGAC
** * * * * **
23369884 ACCATCGGCAAACA-AAACCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACT-AGG-CCC
1 ACCATCGGCAAACATAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATTGG-CACTCTGGTGGC
*
23369946 TT-GGTCGTGCGGGAGCCTC-GAGC
65 TTAGAT-GTGCGGGAGCC-CAGA-C
* * * *
23369969 ACCATCGGCAAA-ATAGGCCCTTGGTTGTGTGAGAGCCTCAGGCACTATTGGCAC-CTAGGT-GC
1 ACCATCGGCAAACATAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATTGGCACTCT-GGTGGC
* * * *
23370031 TTGGATGTGCAGGATCCTCGGAC
65 TTAGATGTGCGGGAGCC-CAGAC
* ** *
23370054 ACCATCGGCAAAC-TAGGCCCTTGGTCCTACGGTCATGTGAGAGCCTCGAACACCATCGGCAC-C
1 ACCATCGGCAAACATAGGCCCTTGG---T-C-G---TGCGAGAGCCTCGGGCACCATTGGCACTC
* ** **
23370117 TAGGT-ACTCGGATGTGCGGGAGCCTTGGAC
58 T-GGTGGCTTAGATGTGCGGGAGCC-CAGAC
** * *
23370147 ACCATCGAAAAAC-TAGGCCCTTGGTCTTGGGAGAGCCTCGGGCACCAT
1 ACCATCGGCAAACATAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
23370195 CGGCTACCTA
Statistics
Matches: 315, Mismatches: 55, Indels: 52
0.75 0.13 0.12
Matches are distributed among these distances:
82 3 0.01
83 3 0.01
84 23 0.07
85 199 0.63
86 11 0.03
87 2 0.01
88 1 0.00
89 1 0.00
90 2 0.01
93 70 0.22
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.20
Consensus pattern (86 bp):
ACCATCGGCAAACATAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATTGGCACTCTGGTGGCT
TAGATGTGCGGGAGCCCAGAC
Found at i:23370077 original size:170 final size:170
Alignment explanation
Indices: 23369714--23370079 Score: 388
Period size: 170 Copynumber: 2.2 Consensus size: 170
23369704 AGCCTCGGGG
* * * * **
23369714 ACCATCAGCAAACTAGGTCCTTGGTCGTGCAAGAGCCTCGGGCACCACTGGCACTTTGGTGGCTT
1 ACCATCGGCAAACTAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCACTGGAACTTAGGTCCCTT
* * *
23369779 GGATGTGCGGGAGCTCGGACACCATCGGCCACATAGGCCCTTGATCGTGCGAGAGCCTCGGGCAC
66 GGATGTGCGGGAGCTCGGACACCATCGGCAAAATAGGCCCTTGATCGTGCGAGAGCCTCAGGCAC
* * *
23369844 CATTGGGACCTGGGCGTTCAGATGTTCGGGAGCGCCAGAC
131 CATTGGCACCTGGGCGTTCAGATGTGCAGGAGCGCCAGAC
* ** **
23369884 ACCATCGGCAAACAAAACCCTTGGTCGTGCGGGAGCCTCGGGCACCA-TCGGTAAC-TAGG-CCC
1 ACCATCGGCAAACTAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCACT-GG-AACTTAGGTCCC
* * *
23369946 TTGG-TCGTGCGGGAGCCTC-GAGCACCATCGGCAAAATAGGCCCTTGGTTGTGTGAGAGCCTCA
64 TTGGAT-GTGCGGGAG-CTCGGA-CACCATCGGCAAAATAGGCCCTTGATCGTGCGAGAGCCTCA
* * * *
23370009 GGCACTATTGGCACCTAGGTGC-TT-GGATGTGCAGGATC-CTCGGAC
126 GGCACCATTGGCACCT-GG-GCGTTCAGATGTGCAGGAGCGC-CAGAC
23370054 ACCATCGGCAAACTAGGCCCTTGGTC
1 ACCATCGGCAAACTAGGCCCTTGGTC
23370080 CTACGGTCAT
Statistics
Matches: 161, Mismatches: 27, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
168 1 0.01
169 18 0.11
170 134 0.83
171 6 0.04
172 2 0.01
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.20
Consensus pattern (170 bp):
ACCATCGGCAAACTAGGCCCTTGGTCGTGCAAGAGCCTCGGGCACCACTGGAACTTAGGTCCCTT
GGATGTGCGGGAGCTCGGACACCATCGGCAAAATAGGCCCTTGATCGTGCGAGAGCCTCAGGCAC
CATTGGCACCTGGGCGTTCAGATGTGCAGGAGCGCCAGAC
Found at i:23370160 original size:93 final size:93
Alignment explanation
Indices: 23369996--23370172 Score: 248
Period size: 93 Copynumber: 1.9 Consensus size: 93
23369986 CCCTTGGTTG
* * * * * *
23369996 TGTGAGAGCCTCAGGCACTATTGGCACCTAGGTGCTTGGATGTGCAGGATCCTCGGACACCATCG
1 TGTGAGAGCCTCAGACACCATCGGCACCTAGGTACTCGGATGTGCAGGAGCCTCGGACACCATCG
**
23370061 GCAAACTAGGCCCTTGGTCCTACGGTCA
66 AAAAACTAGGCCCTTGGTCCTACGGTCA
* *
23370089 TGTGAGAGCCTC-GAACACCATCGGCACCTAGGTACTCGGATGTGCGGGAGCCTTGGACACCATC
1 TGTGAGAGCCTCAG-ACACCATCGGCACCTAGGTACTCGGATGTGCAGGAGCCTCGGACACCATC
23370153 GAAAAACTAGGCCCTTGGTC
65 GAAAAACTAGGCCCTTGGTC
23370173 TTGGGAGAGC
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (93 bp):
TGTGAGAGCCTCAGACACCATCGGCACCTAGGTACTCGGATGTGCAGGAGCCTCGGACACCATCG
AAAAACTAGGCCCTTGGTCCTACGGTCA
Found at i:23370311 original size:128 final size:128
Alignment explanation
Indices: 23369788--23370448 Score: 407
Period size: 128 Copynumber: 5.1 Consensus size: 128
23369778 TGGATGTGCG
* * * * * *
23369788 GGAG-CTCGGACACCATCGGC-CACATAGGCCCTTGATCGTGCGAGAGCCTCGGGCACCATTGGG
1 GGAGCCTCGGGCACCATCGGCTAAC-TAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGGC
* * * * ** * * ** * *
23369851 ACCTGGGCG-TTCAGATGTTCGGGAGCGC-CAGACACCATCGGCAAACAAAACCCTTGGTCGTGC
65 ACCTAGGCGCTT-GGATGTGCGAGAGC-CTTGGACACCATCGACAAACTAGGCCCTTGGTCATTC
*
23369914 G
128 A
*
23369915 GGAGCCTCGGGCACCATCGG-TAACTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCTAACTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGGC-
** * * * * * * * * **
23369979 AAATAGGCCCTTGGTTGTGTGAGAGCCTCAGG-CACTATTGGC-ACCTAGGTGCTTGG--ATGTG
65 ACCTAGGCGCTTGGATGTGCGAGAGCCT-TGGACACCATCGACAAACTAGGCCCTTGGTCAT-T-
23370040 CA
127 CA
* * * * *
23370042 GGATCCTCGGACACCATCGGCAAACTAGGCCCTTGGTCCTACGGTCATGTGAGAGCCTCGAACAC
1 GGAGCCTCGGGCACCATCGGCTAACTAGGCCCTTGG---T-C-G---TGCGAGAGCCTCGAGCAC
** * * *
23370107 CATCGGCACCTAGGTACTCGGATGTGCGGGAGCCTTGGACACCATCGAAAAACTAGGCCCTTGGT
58 CATCGGCACCTAGGCGCTTGGATGTGCGAGAGCCTTGGACACCATCGACAAACTAGGCCCTTGGT
**
23370172 C-TTGG
123 CATTCA
* * * * *
23370177 GAGAGCCTCGGGCACCATCGGCTACCTAGGCCCTTGGTCGTGTGAAAGCGTCGGGCACCATCGGC
1 G-GAGCCTCGGGCACCATCGGCTAACTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGGC
23370242 ACCTAGGCGCTTGGATGTGCGAGAGCCTTGGACACCATCGACAAACTAGGCCCTTGGTCATTCA
65 ACCTAGGCGCTTGGATGTGCGAGAGCCTTGGACACCATCGACAAACTAGGCCCTTGGTCATTCA
* * * * * ** * * * * *
23370306 GGAGCCTAGGGCATCATCAGC-ACCTTGGTGCTATGAT-GTCCGGGAGCCTCGAGCACCACCGAC
1 GGAGCCTCGGGCACCATCGGCTAACTAGGCCCT-TGGTCGTGCGAGAGCCTCGAGCACCATCGGC
* * * * * * * * *
23370369 ACCTTGGTG-TTGGATGGGCGGGAACCTTGGACAGCATC-AGCAACCTAGGCCCTTGGTCGTAC-
65 ACCTAGGCGCTTGGATGTGCGAGAGCCTTGGACACCATCGA-CAAACTAGGCCCTTGGTCATTCA
*
23370431 GAGAGCCTTGGGCACCAT
1 G-GAGCCTCGGGCACCAT
23370449 TGGCACCTGG
Statistics
Matches: 414, Mismatches: 94, Indels: 53
0.74 0.17 0.09
Matches are distributed among these distances:
125 3 0.01
126 58 0.14
127 99 0.24
128 147 0.36
129 6 0.01
131 2 0.00
132 2 0.00
133 2 0.00
134 2 0.00
135 27 0.07
136 65 0.16
137 1 0.00
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (128 bp):
GGAGCCTCGGGCACCATCGGCTAACTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGGCA
CCTAGGCGCTTGGATGTGCGAGAGCCTTGGACACCATCGACAAACTAGGCCCTTGGTCATTCA
Found at i:23370477 original size:126 final size:126
Alignment explanation
Indices: 23370094--23370489 Score: 280
Period size: 126 Copynumber: 3.1 Consensus size: 126
23370084 GGTCATGTGA
* * * * * * * * * *
23370094 GAGCCTCGAACACCATCGGCACCTAGGTACTCGGATGTGCGGGAGCCTTGGACACCATCGAAAAA
1 GAGCCTCGAGCACCACCGACACCTTGGT-GTTGGATGGGCGAGAACCTTGGACACCATCGACAAA
*** * * * * * ** *
23370159 CTAGGCCCTTGGTC-TTGGGAGAGCCTCGGGCACCATCGGCTACCTAGGCCCTTGG-TCGTGTGA
65 CTAGGCCCTTGGTCATACAG-GAGCCTAGGGCACCATCAGC-ACCTTGGCGCTAGGAT-GTCCGG
* * * * * * * * *
23370222 AAGCGTCGGGCACCATCGGCACCTAGGCGCTTGGATGTGCGAGAGCCTTGGACACCATCGACAAA
1 GAGCCTCGAGCACCACCGACACCTTGGTG-TTGGATGGGCGAGAACCTTGGACACCATCGACAAA
* * * *
23370287 CTAGGCCCTTGGTCATTCAGGAGCCTAGGGCATCATCAGCACCTTGGTGCTATGATGTCCGG
65 CTAGGCCCTTGGTCATACAGGAGCCTAGGGCACCATCAGCACCTTGGCGCTAGGATGTCCGG
* * *
23370349 GAGCCTCGAGCACCACCGACACCTTGGTGTTGGATGGGCGGGAACCTTGGACAGCATC-AGCAAC
1 GAGCCTCGAGCACCACCGACACCTTGGTGTTGGATGGGCGAGAACCTTGGACACCATCGA-CAAA
* * ** * *
23370413 CTAGGCCCTTGGTCGTAC-GAGAGCCTTGGGCACCATTGGCACC-TGGACGCTCGGATGTGCGG
65 CTAGGCCCTTGGTCATACAG-GAGCCTAGGGCACCATCAGCACCTTGG-CGCTAGGATGTCCGG
* *
23370475 GAGCCTTGATCACCA
1 GAGCCTCGAGCACCA
23370490 TCGGCAAACT
Statistics
Matches: 216, Mismatches: 46, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
125 5 0.02
126 87 0.40
127 34 0.16
128 87 0.40
129 3 0.01
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.19
Consensus pattern (126 bp):
GAGCCTCGAGCACCACCGACACCTTGGTGTTGGATGGGCGAGAACCTTGGACACCATCGACAAAC
TAGGCCCTTGGTCATACAGGAGCCTAGGGCACCATCAGCACCTTGGCGCTAGGATGTCCGG
Found at i:23370608 original size:43 final size:43
Alignment explanation
Indices: 23370561--23370687 Score: 141
Period size: 43 Copynumber: 3.0 Consensus size: 43
23370551 AGTCGTGCGA
*
23370561 GAGCCTCGGGCACCATCAGCACCTTGGTGGCTCGGATGTGCAG
1 GAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGATGTGCAG
* * * * *
23370604 GAGCCTCAGACACTATCGGCAACCTTGGT-GCTTGGATG-GACGG
1 GAGCCTCGGGCACCATCGGC-ACCTTGGTGGCTCGGATGTG-CAG
* * *
23370647 GAGCCTCGAGCACCATCGGCACCTTGGTGCCTGGGATGTGC
1 GAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGATGTGC
23370688 GGGCTAAAAA
Statistics
Matches: 68, Mismatches: 12, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
42 9 0.13
43 50 0.74
44 9 0.13
ACGTcount: A:0.17, C:0.29, G:0.34, T:0.20
Consensus pattern (43 bp):
GAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGATGTGCAG
Found at i:23370662 original size:129 final size:126
Alignment explanation
Indices: 23370094--23370663 Score: 361
Period size: 128 Copynumber: 4.5 Consensus size: 126
23370084 GGTCATGTGA
* * * * * *
23370094 GAGCCTCGAACACCATCGGC-ACCTAGGTACTCGGATGTGCGGGAGCCTTGGACACCATC-GAAA
1 GAGCCTCGAGCACCATCGGCAACCTTGGTGCTTGGATG-GCGGGAGCCTCGG-CACCATCAGCAA
* * ** * * * ** * *
23370157 AACTAGGCCCTTGGTCTTGGGAGAGCCTCGGGCACCATCGGCTACCTAGGCCCTTGG-TCGTGTG
64 AA-TAGGCCCTTAGTCGTACGAGAGCCTAGGGCACCATCAGC-ACCTTGGTGCTCGGAT-GTGCG
*
23370221 A
126 G
* * * * * * *
23370222 AAGCGTCGGGCACCATCGGC-ACCTAGGCGCTTGGATGTGCGAGAGCCTTGGACACCATC-GACA
1 GAGCCTCGAGCACCATCGGCAACCTTGGTGCTTGGATG-GCGGGAGCCTCGG-CACCATCAG-CA
* * * * * ** *
23370285 AACTAGGCCCTTGGTCATTC-AGGAGCCTAGGGCATCATCAGCACCTTGGTGCTATGATGTCCGG
63 AAATAGGCCCTTAGTCGTACGA-GAGCCTAGGGCACCATCAGCACCTTGGTGCTCGGATGTGCGG
* * * * *
23370349 GAGCCTCGAGCACCACCGAC-ACCTTGGTG-TTGGATGGGCGGGAACCTTGGACAGCATCAGCAA
1 GAGCCTCGAGCACCATCGGCAACCTTGGTGCTTGGAT-GGCGGGAGCCTCGG-CACCATCAGCAA
** * * ** *
23370412 CCTAGGCCCTTGGTCGTACGAGAGCCTTGGGCACCATTGGCACC-TGGACGCTCGGATGTGCGG
64 AATAGGCCCTTAGTCGTACGAGAGCCTAGGGCACCATCAGCACCTTGG-TGCTCGGATGTGCGG
* * * ** ** * *
23370475 GAGCCTTGATCACCATCGGCAAACTAAGCCCTTGG-TCGTGCAGGAGCCTCGGGGACCATCAGCA
1 GAGCCTCGAGCACCATCGGCAACCTTGGTGCTTGGAT-G-GCGGGAGCCTC-GGCACCATCAGCA
* * * *
23370539 AAATAGGCTCTTAGTCGTGCGAGAGCCTCGGGCACCATCAGCACCTTGGTGGCTCGGATGTGCAG
63 AAATAGGCCCTTAGTCGTACGAGAGCCTAGGGCACCATCAGCACCTTGGT-GCTCGGATGTGCGG
*
23370604 GAGCCTC-AGACACTATCGGCAACCTTGGTGCTTGGATGGACGGGAGCCTCGAGCACCATC
1 GAGCCTCGAG-CACCATCGGCAACCTTGGTGCTTGGATGG-CGGGAGCCTCG-GCACCATC
23370664 GGCACCTTGG
Statistics
Matches: 345, Mismatches: 80, Indels: 33
0.75 0.17 0.07
Matches are distributed among these distances:
125 3 0.01
126 89 0.26
127 44 0.13
128 145 0.42
129 63 0.18
130 1 0.00
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (126 bp):
GAGCCTCGAGCACCATCGGCAACCTTGGTGCTTGGATGGCGGGAGCCTCGGCACCATCAGCAAAA
TAGGCCCTTAGTCGTACGAGAGCCTAGGGCACCATCAGCACCTTGGTGCTCGGATGTGCGG
Found at i:23374140 original size:70 final size:69
Alignment explanation
Indices: 23374016--23374224 Score: 242
Period size: 70 Copynumber: 3.0 Consensus size: 69
23374006 CAGATTTAAT
* * * *
23374016 AAAAGGGATCATGCCCAGTAAGTTAGAACACGATCTTTTCTTAATTCTTGAGATCGTTTAAAACT
1 AAAAAGGATCATGCCCAGTAAGTTAGGACA-GATCTCTTCTTAATTCTCGAGATCGTTTAAAACT
23374081 TGAGA
65 TGAGA
* * *
23374086 AAAAAGGATCATGCCCAGTAAGTTAGGACATGATCTCTTCTTAATTCCCAAGATCGTTTTAAACT
1 AAAAAGGATCATGCCCAGTAAGTTAGGACA-GATCTCTTCTTAATTCTCGAGATCGTTTAAAAC-
* *
23374151 TTAAAAAA
64 TT--GAGA
* * * *
23374159 AAAAAGGATCATGCCCAGTAAATTAGGACACA-ATCTT-TTCATTCTCGAGATCGTTTAAAACTT
1 AAAAAGGATCATGCCCAGTAAGTTAGGACAGATCTCTTCTTAATTCTCGAGATCGTTTAAAACTT
23374222 GAG
66 GAG
23374225 TTTGAAAAGA
Statistics
Matches: 117, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
67 1 0.01
69 2 0.02
70 76 0.65
71 6 0.05
72 1 0.01
73 31 0.26
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.30
Consensus pattern (69 bp):
AAAAAGGATCATGCCCAGTAAGTTAGGACAGATCTCTTCTTAATTCTCGAGATCGTTTAAAACTT
GAGA
Found at i:23374836 original size:21 final size:21
Alignment explanation
Indices: 23374796--23374836 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
23374786 CATGTGTATG
* *
23374796 TGTATATATATATTAGAAAAA
1 TGTATATATATATAACAAAAA
*
23374817 TGTATGTATATATAACAAAA
1 TGTATATATATATAACAAAA
23374837 TTTGGAATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.51, C:0.02, G:0.10, T:0.37
Consensus pattern (21 bp):
TGTATATATATATAACAAAAA
Found at i:23374941 original size:31 final size:31
Alignment explanation
Indices: 23374864--23374941 Score: 79
Period size: 31 Copynumber: 2.5 Consensus size: 31
23374854 AAATGAGTAA
* *
23374864 ATAATAATAACAACAATATTAATGATATAAT
1 ATAATAATAACAATAATATTAATGATACAAT
* *
23374895 ATAATAGTAATAATAATATTAAAATGAT-CAAT
1 ATAATAATAACAATAATATT--AATGATACAAT
*
23374927 TTAATAATAA-AATAA
1 ATAATAATAACAATAA
23374942 CTAAAATACG
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
31 22 0.56
32 11 0.28
33 6 0.15
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.33
Consensus pattern (31 bp):
ATAATAATAACAATAATATTAATGATACAAT
Found at i:23379908 original size:24 final size:24
Alignment explanation
Indices: 23379881--23379954 Score: 148
Period size: 24 Copynumber: 3.1 Consensus size: 24
23379871 ATTAGGGATG
23379881 ATTCAATTCGAAATACTTTTAAGA
1 ATTCAATTCGAAATACTTTTAAGA
23379905 ATTCAATTCGAAATACTTTTAAGA
1 ATTCAATTCGAAATACTTTTAAGA
23379929 ATTCAATTCGAAATACTTTTAAGA
1 ATTCAATTCGAAATACTTTTAAGA
23379953 AT
1 AT
23379955 ATCTCTTACA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.42, C:0.12, G:0.08, T:0.38
Consensus pattern (24 bp):
ATTCAATTCGAAATACTTTTAAGA
Found at i:23380077 original size:23 final size:23
Alignment explanation
Indices: 23380049--23380095 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
23380039 GAATGAGTCA
23380049 GAAAAATAAAAAGGGGGATTCTT
1 GAAAAATAAAAAGGGGGATTCTT
*
23380072 GAAAAATAAAAGGGGGGATTCTT
1 GAAAAATAAAAAGGGGGATTCTT
23380095 G
1 G
23380096 TCTTGTTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.45, C:0.04, G:0.30, T:0.21
Consensus pattern (23 bp):
GAAAAATAAAAAGGGGGATTCTT
Found at i:23381167 original size:20 final size:20
Alignment explanation
Indices: 23381142--23381184 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
23381132 ACATGAGTTA
23381142 ATTCATAAACCATTTTTGAC
1 ATTCATAAACCATTTTTGAC
23381162 ATTCATAAACCATTTTTGAC
1 ATTCATAAACCATTTTTGAC
23381182 ATT
1 ATT
23381185 GCTACATACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.35, C:0.19, G:0.05, T:0.42
Consensus pattern (20 bp):
ATTCATAAACCATTTTTGAC
Found at i:23382260 original size:45 final size:45
Alignment explanation
Indices: 23382193--23382280 Score: 142
Period size: 45 Copynumber: 2.0 Consensus size: 45
23382183 ATAGATACTC
*
23382193 AGTGGATTCAGCACATAACAACCACCTTA-TCAATCAATGATGTCT
1 AGTGGAATCAGCACATAACAACCACCTTACT-AATCAATGATGTCT
*
23382238 AGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
1 AGTGGAATCAGCACATAACAACCACCTTACTAATCAATGATGT
23382281 TCCATTCACA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
45 39 0.98
46 1 0.03
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.25
Consensus pattern (45 bp):
AGTGGAATCAGCACATAACAACCACCTTACTAATCAATGATGTCT
Found at i:23382351 original size:50 final size:50
Alignment explanation
Indices: 23382294--23382476 Score: 185
Period size: 50 Copynumber: 3.6 Consensus size: 50
23382284 ATTCACATTT
* *
23382294 TAGCCTGCACATAGTTCTACACATGTGACCATTACCATCCGATACAGTAG
1 TAGCCTGCACATAGTACTACACACGTGACCATTACCATCCGATACAGTAG
* ** * * *
23382344 TAGCCTGCACATAGTACTACACACGTGA-TAGAAACTATCTGCTAC-GCATAG
1 TAGCCTGCACATAGTACTACACACGTGACCA-TTACCATCCGATACAG--TAG
* * * *
23382395 TAGCCTGCACATAGTACTACACATGCGACC--TATCATTCCGGTACACGTAG
1 TAGCCTGCACATAGTACTACACACGTGACCATTACCA-TCCGATACA-GTAG
23382445 TAGCCTGCACATAGTACTACACACGTGACCAT
1 TAGCCTGCACATAGTACTACACACGTGACCAT
23382477 CACTTTCACT
Statistics
Matches: 106, Mismatches: 18, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
49 4 0.04
50 72 0.68
51 29 0.27
52 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (50 bp):
TAGCCTGCACATAGTACTACACACGTGACCATTACCATCCGATACAGTAG
Found at i:23383090 original size:76 final size:76
Alignment explanation
Indices: 23382964--23383116 Score: 306
Period size: 76 Copynumber: 2.0 Consensus size: 76
23382954 TATATAATTC
23382964 ATGTTTAAATTTTTAAACACAAACCCTAGTTCAAAACAATGGTAAAATAGGTAAATCTTGTTACG
1 ATGTTTAAATTTTTAAACACAAACCCTAGTTCAAAACAATGGTAAAATAGGTAAATCTTGTTACG
23383029 AGGATTTCAAA
66 AGGATTTCAAA
23383040 ATGTTTAAATTTTTAAACACAAACCCTAGTTCAAAACAATGGTAAAATAGGTAAATCTTGTTACG
1 ATGTTTAAATTTTTAAACACAAACCCTAGTTCAAAACAATGGTAAAATAGGTAAATCTTGTTACG
23383105 AGGATTTCAAA
66 AGGATTTCAAA
23383116 A
1 A
23383117 ACGTAAAAAT
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 77 1.00
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.31
Consensus pattern (76 bp):
ATGTTTAAATTTTTAAACACAAACCCTAGTTCAAAACAATGGTAAAATAGGTAAATCTTGTTACG
AGGATTTCAAA
Found at i:23385243 original size:13 final size:13
Alignment explanation
Indices: 23385225--23385252 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
23385215 ATTGGGTTTT
23385225 AATTAATTAATTG
1 AATTAATTAATTG
23385238 AATTAATTAATTG
1 AATTAATTAATTG
23385251 AA
1 AA
23385253 GTGGTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (13 bp):
AATTAATTAATTG
Found at i:23389991 original size:39 final size:39
Alignment explanation
Indices: 23389931--23390043 Score: 174
Period size: 39 Copynumber: 2.9 Consensus size: 39
23389921 ACTAAAACAG
* * *
23389931 ATAATTAAA-ACACATATTAATGATATTAAAACTAATAC
1 ATAATTAAAGACACATATTAATGATGTTCAAACTAAGAC
*
23389969 ATAATTAAAGAAACATATTAATGATGTTCAAACTAAGAC
1 ATAATTAAAGACACATATTAATGATGTTCAAACTAAGAC
*
23390008 ATAATTAAAGACTCATATTAATGATGTTCAAACTAA
1 ATAATTAAAGACACATATTAATGATGTTCAAACTAA
23390044 AATAACTAAA
Statistics
Matches: 68, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
38 9 0.13
39 59 0.87
ACGTcount: A:0.51, C:0.11, G:0.07, T:0.31
Consensus pattern (39 bp):
ATAATTAAAGACACATATTAATGATGTTCAAACTAAGAC
Found at i:23390197 original size:36 final size:36
Alignment explanation
Indices: 23390146--23390217 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 36
23390136 ATGGAGTGCA
* * * *
23390146 TGCCCAAGCTTGATCAATTAGTCCCGTGATAGCTTC
1 TGCCCAAACTCGATCAATGAGACCCGTGATAGCTTC
* *
23390182 TGCCCAAACTCGATCAATGAGACCTGTGATGGCTTC
1 TGCCCAAACTCGATCAATGAGACCCGTGATAGCTTC
23390218 CTTGTACTTC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.28
Consensus pattern (36 bp):
TGCCCAAACTCGATCAATGAGACCCGTGATAGCTTC
Found at i:23395911 original size:39 final size:39
Alignment explanation
Indices: 23395853--23395966 Score: 203
Period size: 39 Copynumber: 2.9 Consensus size: 39
23395843 TTAGTTATGT
*
23395853 CATAATTAAA-ACACATATTAATGATATTCAAACTAAGA
1 CATAATTAAAGACACATATTAATGATGTTCAAACTAAGA
23395891 CATAATTAAAGACACATATTAATGATGTTCAAACTAAGA
1 CATAATTAAAGACACATATTAATGATGTTCAAACTAAGA
*
23395930 CATAATTAAAGACTCATATTAATGATGTTCAAACTAA
1 CATAATTAAAGACACATATTAATGATGTTCAAACTAA
23395967 AATAACTAAA
Statistics
Matches: 73, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
38 10 0.14
39 63 0.86
ACGTcount: A:0.49, C:0.13, G:0.08, T:0.30
Consensus pattern (39 bp):
CATAATTAAAGACACATATTAATGATGTTCAAACTAAGA
Found at i:23395975 original size:9 final size:9
Alignment explanation
Indices: 23395961--23395986 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
23395951 ATGATGTTCA
23395961 AACTAAAAT
1 AACTAAAAT
23395970 AACTAAAAT
1 AACTAAAAT
23395979 AACTAAAA
1 AACTAAAA
23395987 ATGGATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.69, C:0.12, G:0.00, T:0.19
Consensus pattern (9 bp):
AACTAAAAT
Found at i:23397123 original size:231 final size:232
Alignment explanation
Indices: 23396720--23397148 Score: 833
Period size: 231 Copynumber: 1.9 Consensus size: 232
23396710 GACACTCTCG
23396720 AACACTCACCCAGATGGCGCCTACCACAATCTCCACCCTGCTAAAACCCAGTAAGAGCAAAGGAA
1 AACACTCACCCAGATGGCGCCTACCACAATCTCCACCCTGCTAAAACCCAGTAAGAGCAAAGGAA
*
23396785 CCCCCACTCTAATCGACCCATCAGATCTGGCCCATTTTTTAGGCCTCTGAACAGAACTAGAGGGC
66 CCCCCACTCTAATCGACCCATCAGATCTGGCCCATTTTTTAGGCCACTGAACAGAACTAGAGGGC
*
23396850 TCTGAATCCCTCTTATCTAGCGCTCAACGTACTTAACCTCTTTAGCGATCTTCGCCTTATCT-CC
131 TCTGAATCCCTCTTATCTAGCGCTCAACATACTTAACCTCTTTAGCGATCTTCGCCTTATCTACC
23396914 AAAGACCCACACCTCAAACAAGCCTCTAACCTCCTCC
196 AAAGACCCACACCTCAAACAAGCCTCTAACCTCCTCC
23396951 AACACTCACCCAGATGGCGCCTACCACAATCTCCACCCTGCTAAAACCCAGTAAGAGCAAAGGAA
1 AACACTCACCCAGATGGCGCCTACCACAATCTCCACCCTGCTAAAACCCAGTAAGAGCAAAGGAA
23397016 CCCCCACTCTAATCGACCCATCAGATCTGGCCCATTTTTTAGGCCACTGAACAGAACTAGAGGGC
66 CCCCCACTCTAATCGACCCATCAGATCTGGCCCATTTTTTAGGCCACTGAACAGAACTAGAGGGC
23397081 TCTGAATCCCTCTTATCTAGCGCTCAACATACTTAACCTCTTTAGCGATCTTCGCCTTATCTACC
131 TCTGAATCCCTCTTATCTAGCGCTCAACATACTTAACCTCTTTAGCGATCTTCGCCTTATCTACC
23397146 AAA
196 AAA
23397149 ACAATGAACT
Statistics
Matches: 195, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
231 190 0.97
232 5 0.03
ACGTcount: A:0.29, C:0.35, G:0.14, T:0.22
Consensus pattern (232 bp):
AACACTCACCCAGATGGCGCCTACCACAATCTCCACCCTGCTAAAACCCAGTAAGAGCAAAGGAA
CCCCCACTCTAATCGACCCATCAGATCTGGCCCATTTTTTAGGCCACTGAACAGAACTAGAGGGC
TCTGAATCCCTCTTATCTAGCGCTCAACATACTTAACCTCTTTAGCGATCTTCGCCTTATCTACC
AAAGACCCACACCTCAAACAAGCCTCTAACCTCCTCC
Found at i:23398454 original size:17 final size:19
Alignment explanation
Indices: 23398421--23398456 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
23398411 AGAAATGCAG
23398421 TTTGTGTTTTTAGAAAACC
1 TTTGTGTTTTTAGAAAACC
23398440 TTTGT-TTTTTA-AAAACC
1 TTTGTGTTTTTAGAAAACC
23398457 GTGATTTCAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 6 0.35
19 5 0.29
ACGTcount: A:0.28, C:0.11, G:0.11, T:0.50
Consensus pattern (19 bp):
TTTGTGTTTTTAGAAAACC
Found at i:23399994 original size:18 final size:17
Alignment explanation
Indices: 23399965--23400003 Score: 53
Period size: 16 Copynumber: 2.2 Consensus size: 17
23399955 ATGAGAGAGA
23399965 AAAATGAAATTTGAAAAAT
1 AAAATGAAATTT--AAAAT
23399984 AAAAT-AAATTTAAAAT
1 AAAATGAAATTTAAAAT
23400000 AAAA
1 AAAA
23400004 AATAACATCC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 9 0.45
18 6 0.30
19 5 0.25
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (17 bp):
AAAATGAAATTTAAAAT
Found at i:23400005 original size:18 final size:18
Alignment explanation
Indices: 23399964--23400008 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
23399954 AATGAGAGAG
23399964 AAAAATGAAATTTGAAAAA
1 AAAAAT-AAATTTGAAAAA
*
23399983 TAAAATAAATTT-AAAATA
1 AAAAATAAATTTGAAAA-A
23400001 AAAAATAA
1 AAAAATAA
23400009 CATCCCAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 4 0.17
18 14 0.61
19 5 0.22
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.24
Consensus pattern (18 bp):
AAAAATAAATTTGAAAAA
Found at i:23405003 original size:21 final size:21
Alignment explanation
Indices: 23404961--23405004 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
23404951 TTTTTTATCA
*
23404961 ATTTATATATTTCTAAACTTT
1 ATTTATATATTTCTAAAATTT
*
23404982 ATTTATA-ATTTTTAAAAATTT
1 ATTTATATATTTCT-AAAATTT
23405003 AT
1 AT
23405005 ATTCACCTCG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTTATATATTTCTAAAATTT
Found at i:23407677 original size:21 final size:21
Alignment explanation
Indices: 23407634--23407677 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
23407624 TTTTTTATCA
**
23407634 ATTTATATATTTTTAAAGTTT
1 ATTTATATATTTTTAAAAATT
23407655 ATTTATA-ATTTTTTAAAAATT
1 ATTTATATA-TTTTTAAAAATT
23407676 AT
1 AT
23407678 ATTCACCTCG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 19 0.95
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (21 bp):
ATTTATATATTTTTAAAAATT
Found at i:23418406 original size:49 final size:49
Alignment explanation
Indices: 23418297--23418686 Score: 589
Period size: 49 Copynumber: 8.1 Consensus size: 49
23418287 GAAATGATAG
*
23418297 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
23418344 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* *
23418393 TAGGGCCCAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* *
23418442 TAGGGTCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
23418491 TAAGGCCTAATGGGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAAT--GGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
23418540 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
23418587 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * *
23418636 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
23418683 TAAG
1 TAAG
23418687 TCCCGAAGGG
Statistics
Matches: 319, Mismatches: 18, Indels: 12
0.91 0.05 0.03
Matches are distributed among these distances:
47 115 0.36
48 1 0.00
49 178 0.56
51 25 0.08
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:23422671 original size:21 final size:22
Alignment explanation
Indices: 23422647--23422691 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
23422637 AGAAAAAGAG
23422647 AAATACAAAAAAG-AATAG-ATC
1 AAAT-CAAAAAAGAAATAGAATC
*
23422668 AAATCAAAAAGGAAATAGAATC
1 AAATCAAAAAAGAAATAGAATC
23422690 AA
1 AA
23422692 CAATTTGCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 7 0.33
21 9 0.43
22 5 0.24
ACGTcount: A:0.67, C:0.09, G:0.11, T:0.13
Consensus pattern (22 bp):
AAATCAAAAAAGAAATAGAATC
Found at i:23425576 original size:35 final size:35
Alignment explanation
Indices: 23425500--23425696 Score: 235
Period size: 35 Copynumber: 5.8 Consensus size: 35
23425490 AAATAATACA
* *
23425500 TGAACAGGAGAGATTCCCTGCAA-GAAATGA--TG
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGTG
*
23425532 TGAATAGGAGAGATTCCCTGCAACAAAATAATGTG
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGTG
*
23425567 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCG
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGTG
* *
23425602 TGAACAGGAGAGATTCCCTGCAA-GAAATGA--TG
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGTG
* * * *
23425634 TGAATAGGAAAGATTCCCTGCAACAGAATAATGCG
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGTG
* * *
23425669 TGAACAGGAAATATTCCCTGCAAGAAAA
1 TGAACAGGAGAGATTCCCTGCAACAAAA
23425697 GACAAGTGAA
Statistics
Matches: 141, Mismatches: 18, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
32 44 0.31
33 9 0.06
34 5 0.04
35 83 0.59
ACGTcount: A:0.40, C:0.17, G:0.24, T:0.19
Consensus pattern (35 bp):
TGAACAGGAGAGATTCCCTGCAACAAAATAATGTG
Found at i:23425636 original size:67 final size:68
Alignment explanation
Indices: 23425500--23425695 Score: 256
Period size: 67 Copynumber: 2.9 Consensus size: 68
23425490 AAATAATACA
* * * *
23425500 TGAACAGGAGAGATTCCCTGCAA-GAAATGAT--GTGAATAGGAGAGATTCCCTGCAACAAAATA
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACAGGAGAGATTCCCTGCAA-GAAATA
23425562 ATGTG
65 A-GTG
*
23425567 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACAGGAGAGATTCCCTGCAAGAAATGA
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACAGGAGAGATTCCCTGCAAGAAATAA
23425632 -TG
66 GTG
* * * * *
23425634 TGAATAGGAAAGATTCCCTGCAACAGAATAATGCGTGAACAGGAAATATTCCCTGCAAGAAA
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACAGGAGAGATTCCCTGCAAGAAA
23425696 AGACAAGTGA
Statistics
Matches: 116, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
67 82 0.71
68 6 0.05
69 5 0.04
70 23 0.20
ACGTcount: A:0.40, C:0.17, G:0.24, T:0.19
Consensus pattern (68 bp):
TGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACAGGAGAGATTCCCTGCAAGAAATAA
GTG
Found at i:23425666 original size:102 final size:102
Alignment explanation
Indices: 23425490--23425696 Score: 342
Period size: 102 Copynumber: 2.0 Consensus size: 102
23425480 GTCCAAAAAG
*
23425490 AAATAATACATGAACAGGAGAGATTCCCTGCAAGAAATGATGTGAATAGGAGAGATTCCCTGCAA
1 AAATAATACATGAACAGGAGAGATTCCCTGCAAGAAATGATGTGAATAGGAAAGATTCCCTGCAA
* *
23425555 CAAAATAATGTGTGAACAGGAGAGATTCCCTGCAACA
66 CAAAATAATGCGTGAACAGGAAAGATTCCCTGCAACA
* *
23425592 AAATAATGCGTGAACAGGAGAGATTCCCTGCAAGAAATGATGTGAATAGGAAAGATTCCCTGCAA
1 AAATAATACATGAACAGGAGAGATTCCCTGCAAGAAATGATGTGAATAGGAAAGATTCCCTGCAA
* * *
23425657 CAGAATAATGCGTGAACAGGAAATATTCCCTGCAAGA
66 CAAAATAATGCGTGAACAGGAAAGATTCCCTGCAACA
23425694 AAA
1 AAA
23425697 GACAAGTGAA
Statistics
Matches: 97, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
102 97 1.00
ACGTcount: A:0.42, C:0.16, G:0.23, T:0.19
Consensus pattern (102 bp):
AAATAATACATGAACAGGAGAGATTCCCTGCAAGAAATGATGTGAATAGGAAAGATTCCCTGCAA
CAAAATAATGCGTGAACAGGAAAGATTCCCTGCAACA
Found at i:23429552 original size:21 final size:21
Alignment explanation
Indices: 23429528--23429571 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
23429518 CTTTTTTTCA
*
23429528 ATTTAT-ATATTTTTAAAGTTT
1 ATTTATAAT-TTTTTAAAATTT
23429549 ATTTATAATTTTTTAAAATTT
1 ATTTATAATTTTTTAAAATTT
23429570 AT
1 AT
23429572 ATTCACCTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 19 0.90
22 2 0.10
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (21 bp):
ATTTATAATTTTTTAAAATTT
Found at i:23432134 original size:101 final size:102
Alignment explanation
Indices: 23432021--23432203 Score: 282
Period size: 101 Copynumber: 1.8 Consensus size: 102
23432011 AGTGATGGTA
* *
23432021 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACC-AGA-A-TGATAGGTCGCATGTGTAGTA
1 ACGTGTGTAGTACAATGTGCAGGCTACTACGTGTACCGA-ATAGTGAT-GGTCACATGTGTAGTA
23432083 CTATGTGCAGGCTACTATGCGTACCGGATAGCTCCGATT
64 CTATGTGCAGGCTACTATGCGTACCGGATAGCTCCGATT
* *
23432122 ACGTGTGTAGTACAATGTGTAGGCTACTACGTGTATCGAATAGTGATGGTCACATGTGTAGTACT
1 ACGTGTGTAGTACAATGTGCAGGCTACTACGTGTACCGAATAGTGATGGTCACATGTGTAGTACT
*
23432187 ATGTTCAGGCTACTATG
66 ATGTGCAGGCTACTATG
23432204 TGAACCGGTA
Statistics
Matches: 74, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
101 35 0.47
102 35 0.47
103 4 0.05
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (102 bp):
ACGTGTGTAGTACAATGTGCAGGCTACTACGTGTACCGAATAGTGATGGTCACATGTGTAGTACT
ATGTGCAGGCTACTATGCGTACCGGATAGCTCCGATT
Found at i:23432180 original size:51 final size:50
Alignment explanation
Indices: 23432011--23432201 Score: 185
Period size: 51 Copynumber: 3.8 Consensus size: 50
23432001 TGAAAGTGAA
* * *
23432011 AGTGATGGTAACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGA-
1 AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACGA-AT
* * * *
23432061 A-TGATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGAT
1 AGTGAT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-CGAAT
* * *
23432112 AGCTCCGAT--T-ACGTGTGTAGTACAATGTGTAGGCTACTACGTGTATCGAAT
1 AG-T--GATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-CGAAT
*
23432163 AGTGATGGTCACATGTGTAGTACTATGTTCAGGCTACTA
1 AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
23432202 TGTGAACCGG
Statistics
Matches: 112, Mismatches: 19, Indels: 19
0.75 0.13 0.13
Matches are distributed among these distances:
48 3 0.03
49 4 0.04
50 38 0.34
51 62 0.55
52 1 0.01
53 1 0.01
55 3 0.03
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (50 bp):
AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACGAAT
Found at i:23432211 original size:102 final size:101
Alignment explanation
Indices: 23432021--23432211 Score: 278
Period size: 102 Copynumber: 1.9 Consensus size: 101
23432011 AGTGATGGTA
* *
23432021 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGATAGGTCGCATGTGTAGTACTA
1 ACGTGTGTAGTACAATGTGCAGGCTACTACGTGTACCAGAATGATAGGTCACATGTGTAGTACTA
*
23432086 TGTGCAGGCTACTATGCGTACCGGATAGCTCCGATT
66 TGTGCAGGCTACTATGCGAACCGGATAGCTCCGATT
* *
23432122 ACGTGTGTAGTACAATGTGTAGGCTACTACGTGTATC-GAAT-AGTGATGGTCACATGTGTAGTA
1 ACGTGTGTAGTACAATGTGCAGGCTACTACGTGTACCAGAATGA-T-A-GGTCACATGTGTAGTA
* *
23432185 CTATGTTCAGGCTACTATGTGAACCGG
63 CTATGTGCAGGCTACTATGCGAACCGG
23432212 TATCATTAAT
Statistics
Matches: 80, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
99 1 0.01
100 5 0.06
101 35 0.44
102 39 0.49
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (101 bp):
ACGTGTGTAGTACAATGTGCAGGCTACTACGTGTACCAGAATGATAGGTCACATGTGTAGTACTA
TGTGCAGGCTACTATGCGAACCGGATAGCTCCGATT
Found at i:23432298 original size:46 final size:43
Alignment explanation
Indices: 23432207--23432304 Score: 108
Period size: 46 Copynumber: 2.2 Consensus size: 43
23432197 TACTATGTGA
* *
23432207 ACCGGTATCATTAATTATAAGGTGGTTGCTATGTGCTGATCCC
1 ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTAATCCC
* *
23432250 ACCGGATATCATTGATTACAAAGGGTGGTTGCTGTGTGCTCAAT-CC
1 ACCGG-TATCATTAATTA-AAA-GGTGGTTGCTATGTGCT-AATCCC
23432296 ACCGTGTAT
1 ACCG-GTAT
23432305 ATGTTATTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
43 5 0.11
44 11 0.24
45 2 0.04
46 25 0.54
47 3 0.07
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.33
Consensus pattern (43 bp):
ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTAATCCC
Found at i:23432450 original size:16 final size:16
Alignment explanation
Indices: 23432429--23432460 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
23432419 TGATTGAAAG
*
23432429 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
23432445 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
23432461 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:23432601 original size:19 final size:19
Alignment explanation
Indices: 23432577--23432614 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
23432567 GAGTCTATTT
23432577 TTACATAAAATAAATAGAG
1 TTACATAAAATAAATAGAG
23432596 TTACATAAAATAAATAGAG
1 TTACATAAAATAAATAGAG
23432615 CAAGAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.58, C:0.05, G:0.11, T:0.26
Consensus pattern (19 bp):
TTACATAAAATAAATAGAG
Found at i:23433151 original size:21 final size:21
Alignment explanation
Indices: 23433122--23433165 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
23433112 ATTTTCGAGG
23433122 ATATACAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
*
23433143 ATATGCAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
23433164 AT
1 AT
23433166 GATTTTGTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.41, C:0.09, G:0.11, T:0.39
Consensus pattern (21 bp):
ATATACAATCTTAGATATGAT
Found at i:23433759 original size:25 final size:25
Alignment explanation
Indices: 23433708--23433759 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
23433698 AATTTTGTTA
**
23433708 ATGTAATTATTATTATTATTTTCAT
1 ATGTAATTATTATTATTATTAGCAT
23433733 ATGTAATTATTATTATT-TTAGCTAT
1 ATGTAATTATTATTATTATTAGC-AT
23433758 AT
1 AT
23433760 ATATATGTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 3 0.12
25 21 0.88
ACGTcount: A:0.33, C:0.04, G:0.06, T:0.58
Consensus pattern (25 bp):
ATGTAATTATTATTATTATTAGCAT
Found at i:23434358 original size:19 final size:20
Alignment explanation
Indices: 23434319--23434358 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
23434309 TTCTAGGCCT
* *
23434319 TTGTAATATTTATTATTGCA
1 TTGTAATATTTAATATAGCA
23434339 TTGT-ATATTTAATATAGCA
1 TTGTAATATTTAATATAGCA
23434358 T
1 T
23434359 CACATCATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.53
Consensus pattern (20 bp):
TTGTAATATTTAATATAGCA
Found at i:23434715 original size:98 final size:98
Alignment explanation
Indices: 23434599--23434792 Score: 334
Period size: 98 Copynumber: 2.0 Consensus size: 98
23434589 TAAAAACAAT
* *
23434599 AAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTATGCCCTAACGTATTGGGTGTGATTTCT
1 AAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCATGCCCTAACGTATTGGGTGTGATTTCT
*
23434664 TAAATCTTGGATAAGTGGATGTTCTTTTAAAGA
66 TAAATCTTGGATAAGTGGATATTCTTTTAAAGA
* * *
23434697 AAAGGAAATATTTCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCT
1 AAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCATGCCCTAACGTATTGGGTGTGATTTCT
23434762 TAAATCTTGGATAAGTGGATATTCTTTTAAA
66 TAAATCTTGGATAAGTGGATATTCTTTTAAA
23434793 ATTTTATTAT
Statistics
Matches: 90, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 90 1.00
ACGTcount: A:0.30, C:0.10, G:0.24, T:0.37
Consensus pattern (98 bp):
AAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCATGCCCTAACGTATTGGGTGTGATTTCT
TAAATCTTGGATAAGTGGATATTCTTTTAAAGA
Found at i:23437937 original size:24 final size:24
Alignment explanation
Indices: 23437910--23437963 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
23437900 TTGCATTTAT
23437910 TTTTGAGCCAA-TATTATTTCATTC
1 TTTTGAG-CAATTATTATTTCATTC
* *
23437934 TTTTCGAGTAATTATTCTTTCATTC
1 TTTT-GAGCAATTATTATTTCATTC
23437959 TTTTG
1 TTTTG
23437964 GATTCTCTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 7 0.27
25 19 0.73
ACGTcount: A:0.20, C:0.15, G:0.09, T:0.56
Consensus pattern (24 bp):
TTTTGAGCAATTATTATTTCATTC
Found at i:23439141 original size:8 final size:8
Alignment explanation
Indices: 23439119--23439163 Score: 56
Period size: 8 Copynumber: 5.8 Consensus size: 8
23439109 TGAGTCGGAA
23439119 AAAAAATG
1 AAAAAATG
**
23439127 ACGAAATG
1 AAAAAATG
23439135 AAAAAATG
1 AAAAAATG
*
23439143 AAAAAGTG
1 AAAAAATG
23439151 -AAAAATG
1 AAAAAATG
23439158 AAAAAA
1 AAAAAA
23439164 GTAAAATAGA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
7 6 0.20
8 24 0.80
ACGTcount: A:0.71, C:0.02, G:0.16, T:0.11
Consensus pattern (8 bp):
AAAAAATG
Found at i:23439152 original size:16 final size:15
Alignment explanation
Indices: 23439119--23439162 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
23439109 TGAGTCGGAA
*
23439119 AAAAAATGACGAAATG
1 AAAAAATGA-AAAATG
23439135 AAAAAATGAAAAAGTG
1 AAAAAATGAAAAA-TG
23439151 -AAAAATGAAAAA
1 AAAAAATGAAAAA
23439163 AGTAAAATAG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 15 0.58
16 11 0.42
ACGTcount: A:0.70, C:0.02, G:0.16, T:0.11
Consensus pattern (15 bp):
AAAAAATGAAAAATG
Found at i:23440647 original size:132 final size:132
Alignment explanation
Indices: 23440408--23440674 Score: 401
Period size: 132 Copynumber: 2.0 Consensus size: 132
23440398 GTGAAACACT
* * *
23440408 AAGCCTTGTCTCCCTGAGCAACAGCGGAGTACGTTGAGGATCGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAACAGCGAAGTACGCTGAAGATCGTAGATCTTATCTCCCTAAGCAG
* * * * *
23440473 TAGTGGAGTAGATCGAGGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTTAAGCCA
66 TAGTGGAGCAGATCGAAGACAGCAAATCATATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
23440538 CC
131 CC
** *
23440540 AAGCCTTGTCTCCCTGAGC-ACTAGCGAAGTGGGCTGAAGATTGTAGATCTTATCTCCCTAAGCA
1 AAGCCTTGTCTCCCTGAGCAAC-AGCGAAGTACGCTGAAGATCGTAGATCTTATCTCCCTAAGCA
*
23440604 GTAGTGGAGCAGATCGAAGACAGCAAATCATATCTTTCTAAGATAGTGGGAAGCAGATTTAAGCC
65 GTAGTGGAGCAGATCGAAGACAGCAAATCATATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
*
23440669 AGC
130 ACC
23440672 AAG
1 AAG
23440675 TTTTATCCTC
Statistics
Matches: 121, Mismatches: 13, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
131 2 0.02
132 119 0.98
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (132 bp):
AAGCCTTGTCTCCCTGAGCAACAGCGAAGTACGCTGAAGATCGTAGATCTTATCTCCCTAAGCAG
TAGTGGAGCAGATCGAAGACAGCAAATCATATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
CC
Found at i:23440705 original size:45 final size:44
Alignment explanation
Indices: 23440655--23440756 Score: 125
Period size: 44 Copynumber: 2.3 Consensus size: 44
23440645 GATAGTGGGA
* *
23440655 AGCAGATTTAAGCCAGCAAGTTTTATC-CTCCTGAAGTTGTAGTGG
1 AGCAGATTAAAGCCA-CAAGTTTTATCTC-CCTGAAGTTGCAGTGG
* *
23440700 AGCAGATTAAAGCTATAAGTTTTATCTCCCTGAAGTTGCAGTGG
1 AGCAGATTAAAGCCACAAGTTTTATCTCCCTGAAGTTGCAGTGG
* *
23440744 AGTAGATTGAAGC
1 AGCAGATTAAAGC
23440757 ACGAATTCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
44 36 0.72
45 14 0.28
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (44 bp):
AGCAGATTAAAGCCACAAGTTTTATCTCCCTGAAGTTGCAGTGG
Found at i:23440723 original size:44 final size:44
Alignment explanation
Indices: 23440672--23440756 Score: 127
Period size: 44 Copynumber: 1.9 Consensus size: 44
23440662 TTAAGCCAGC
*
23440672 AAGTTTTATC-CTCCTGAAGTTGTAGTGGAGCAGATTAAAGCTAT
1 AAGTTTTATCTC-CCTGAAGTTGCAGTGGAGCAGATTAAAGCTAT
* *
23440716 AAGTTTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGC
1 AAGTTTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC
23440757 ACGAATTCCT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
44 36 0.97
45 1 0.03
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (44 bp):
AAGTTTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAT
Found at i:23441041 original size:19 final size:21
Alignment explanation
Indices: 23440960--23441035 Score: 120
Period size: 21 Copynumber: 3.7 Consensus size: 21
23440950 ATTTTCGAGG
23440960 ATATACAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
*
23440981 A-A-GCAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
*
23441000 ATATGCAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
23441021 ATATACAATCTTAGA
1 ATATACAATCTTAGA
23441036 AGATATGATT
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
19 17 0.33
20 2 0.04
21 32 0.63
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.36
Consensus pattern (21 bp):
ATATACAATCTTAGATATGAT
Found at i:23441071 original size:21 final size:23
Alignment explanation
Indices: 23441027--23441071 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
23441017 TGATATATAC
*
23441027 AATCTTAGAAGATATGATTTTGT
1 AATCTTAGAAGATATGAATTTGT
*
23441050 AATCTTA-AAGAT-TTAATTTGT
1 AATCTTAGAAGATATGAATTTGT
23441071 A
1 A
23441072 GATACCCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 8 0.40
22 5 0.25
23 7 0.35
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.44
Consensus pattern (23 bp):
AATCTTAGAAGATATGAATTTGT
Found at i:23442231 original size:19 final size:20
Alignment explanation
Indices: 23442192--23442231 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
23442182 TTCTAGGCCT
* *
23442192 TTGTAATATTTATTATTGCA
1 TTGTAATATTTAATATAGCA
23442212 TTGT-ATATTTAATATAGCA
1 TTGTAATATTTAATATAGCA
23442231 T
1 T
23442232 CACATCATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.53
Consensus pattern (20 bp):
TTGTAATATTTAATATAGCA
Found at i:23442573 original size:98 final size:98
Alignment explanation
Indices: 23442468--23442662 Score: 329
Period size: 98 Copynumber: 2.0 Consensus size: 98
23442458 CTAAAAACAA
* *
23442468 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGT-CCCATAACGTATTGGGTGTGATTT
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCC-TAACGTATTGGGTGTGATTT
*
23442532 CTTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
65 CTTAAATCTTGGATAAGTGGATATTCTTTTAAAG
* *
23442566 TAAAGGAAATATTCCGAGTTTGGTATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
23442631 TTAAATCTTGGATAAGTGGATATTCTTTTAAA
66 TTAAATCTTGGATAAGTGGATATTCTTTTAAA
23442663 ATTTTATTGT
Statistics
Matches: 91, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
98 88 0.97
99 3 0.03
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.37
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATATTCTTTTAAAG
Found at i:23445805 original size:24 final size:24
Alignment explanation
Indices: 23445778--23445831 Score: 56
Period size: 25 Copynumber: 2.2 Consensus size: 24
23445768 TTGCATTTAT
*
23445778 TTTTGAGCCAA-TATTATTTCATTC
1 TTTTGAG-CAATTATTATTTCATTA
* *
23445802 TTTTCGAGTAATTATTCTTTCATTA
1 TTTT-GAGCAATTATTATTTCATTA
23445827 TTTTG
1 TTTTG
23445832 GATTCTCTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
24 7 0.28
25 18 0.72
ACGTcount: A:0.22, C:0.13, G:0.09, T:0.56
Consensus pattern (24 bp):
TTTTGAGCAATTATTATTTCATTA
Found at i:23447010 original size:8 final size:8
Alignment explanation
Indices: 23446988--23447032 Score: 56
Period size: 8 Copynumber: 5.8 Consensus size: 8
23446978 TGAGTCGGAA
23446988 AAAAAATG
1 AAAAAATG
**
23446996 ACGAAATG
1 AAAAAATG
23447004 AAAAAATG
1 AAAAAATG
*
23447012 AAAAAGTG
1 AAAAAATG
23447020 -AAAAATG
1 AAAAAATG
23447027 AAAAAA
1 AAAAAA
23447033 GTAAAATAGA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
7 6 0.20
8 24 0.80
ACGTcount: A:0.71, C:0.02, G:0.16, T:0.11
Consensus pattern (8 bp):
AAAAAATG
Found at i:23447021 original size:16 final size:15
Alignment explanation
Indices: 23446988--23447031 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
23446978 TGAGTCGGAA
*
23446988 AAAAAATGACGAAATG
1 AAAAAATGA-AAAATG
23447004 AAAAAATGAAAAAGTG
1 AAAAAATGAAAAA-TG
23447020 -AAAAATGAAAAA
1 AAAAAATGAAAAA
23447032 AGTAAAATAG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 15 0.58
16 11 0.42
ACGTcount: A:0.70, C:0.02, G:0.16, T:0.11
Consensus pattern (15 bp):
AAAAAATGAAAAATG
Found at i:23448517 original size:132 final size:132
Alignment explanation
Indices: 23448278--23448544 Score: 401
Period size: 132 Copynumber: 2.0 Consensus size: 132
23448268 GTGAAACACT
* * *
23448278 AAGCCTTGTCTCCCTGAGCAACAGCGGAGTACGTTGAGGATCGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAACAGCGAAGTACGCTGAAGATCGTAGATCTTATCTCCCTAAGCAG
* * * * *
23448343 TAGTGGAGTAGATCGAGGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTTAAGCCA
66 TAGTGGAGCAGATCGAAGACAGCAAATCATATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
23448408 CC
131 CC
** *
23448410 AAGCCTTGTCTCCCTGAGC-ACTAGCGAAGTGGGCTGAAGATTGTAGATCTTATCTCCCTAAGCA
1 AAGCCTTGTCTCCCTGAGCAAC-AGCGAAGTACGCTGAAGATCGTAGATCTTATCTCCCTAAGCA
*
23448474 GTAGTGGAGCAGATCGAAGACAGCAAATCATATCTTTCTAAGATAGTGGGAAGCAGATTTAAGCC
65 GTAGTGGAGCAGATCGAAGACAGCAAATCATATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
*
23448539 AGC
130 ACC
23448542 AAG
1 AAG
23448545 TTTTATCCTC
Statistics
Matches: 121, Mismatches: 13, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
131 2 0.02
132 119 0.98
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (132 bp):
AAGCCTTGTCTCCCTGAGCAACAGCGAAGTACGCTGAAGATCGTAGATCTTATCTCCCTAAGCAG
TAGTGGAGCAGATCGAAGACAGCAAATCATATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
CC
Found at i:23448575 original size:45 final size:44
Alignment explanation
Indices: 23448525--23448626 Score: 125
Period size: 44 Copynumber: 2.3 Consensus size: 44
23448515 GATAGTGGGA
* *
23448525 AGCAGATTTAAGCCAGCAAGTTTTATC-CTCTTGAAGTTGCAGTGG
1 AGCAGATTAAAGCCA-CAAGTTTTATCTC-CCTGAAGTTGCAGTGG
* *
23448570 AGCAGATTAAAGCTATAAGTTTTATCTCCCTGAAGTTGCAGTGG
1 AGCAGATTAAAGCCACAAGTTTTATCTCCCTGAAGTTGCAGTGG
* *
23448614 AGTAGATTGAAGC
1 AGCAGATTAAAGC
23448627 ACGAATTCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
44 36 0.72
45 14 0.28
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (44 bp):
AGCAGATTAAAGCCACAAGTTTTATCTCCCTGAAGTTGCAGTGG
Found at i:23448593 original size:44 final size:44
Alignment explanation
Indices: 23448542--23448626 Score: 127
Period size: 44 Copynumber: 1.9 Consensus size: 44
23448532 TTAAGCCAGC
*
23448542 AAGTTTTATC-CTCTTGAAGTTGCAGTGGAGCAGATTAAAGCTAT
1 AAGTTTTATCTC-CCTGAAGTTGCAGTGGAGCAGATTAAAGCTAT
* *
23448586 AAGTTTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGC
1 AAGTTTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC
23448627 ACGAATTCCT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
44 36 0.97
45 1 0.03
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (44 bp):
AAGTTTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAT
Found at i:23448911 original size:19 final size:21
Alignment explanation
Indices: 23448830--23448905 Score: 120
Period size: 21 Copynumber: 3.7 Consensus size: 21
23448820 ATTTTCGAGG
23448830 ATATACAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
*
23448851 A-A-GCAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
*
23448870 ATATGCAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
23448891 ATATACAATCTTAGA
1 ATATACAATCTTAGA
23448906 AGATATGATT
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
19 17 0.33
20 2 0.04
21 32 0.63
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.36
Consensus pattern (21 bp):
ATATACAATCTTAGATATGAT
Found at i:23448941 original size:21 final size:23
Alignment explanation
Indices: 23448897--23448941 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
23448887 TGATATATAC
*
23448897 AATCTTAGAAGATATGATTTTGT
1 AATCTTAGAAGATATGAATTTGT
*
23448920 AATCTTA-AAGAT-TTAATTTGT
1 AATCTTAGAAGATATGAATTTGT
23448941 A
1 A
23448942 GATACCCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 8 0.40
22 5 0.25
23 7 0.35
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.44
Consensus pattern (23 bp):
AATCTTAGAAGATATGAATTTGT
Found at i:23449239 original size:23 final size:25
Alignment explanation
Indices: 23449207--23449258 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
23449197 CCTTTTAACG
* *
23449207 TTTTTGTAA-TTA-AGTTTTCTTTA
1 TTTTTGTAATTTACACTTTTATTTA
*
23449230 TTTTTTTAATTTACACTTTTATTTA
1 TTTTTGTAATTTACACTTTTATTTA
23449255 TTTT
1 TTTT
23449259 AAATTCCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 8 0.33
24 3 0.12
25 13 0.54
ACGTcount: A:0.21, C:0.06, G:0.04, T:0.69
Consensus pattern (25 bp):
TTTTTGTAATTTACACTTTTATTTA
Found at i:23450109 original size:19 final size:20
Alignment explanation
Indices: 23450070--23450109 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
23450060 TTCTAGGCCT
* *
23450070 TTGTAATATTTATTATTGCA
1 TTGTAATATTTAATATAGCA
23450090 TTGT-ATATTTAATATAGCA
1 TTGTAATATTTAATATAGCA
23450109 T
1 T
23450110 CACATCATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.53
Consensus pattern (20 bp):
TTGTAATATTTAATATAGCA
Found at i:23450451 original size:98 final size:98
Alignment explanation
Indices: 23450346--23450540 Score: 338
Period size: 98 Copynumber: 2.0 Consensus size: 98
23450336 CTAAAAACAA
* * *
23450346 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGT-CCCATAACGTATTGGGTGTGATTT
1 TAAAGGAAATATTCCGAGGTTGGGATTCTAAAGGAATCGTGCCC-TAACGTATTGGGTGTGATTT
23450410 CTTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
65 CTTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
*
23450444 TAAAGGAAATATTCCGAGGTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGGTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
23450509 TTAAATCTTGGATAAGTGGATGTTCTTTTAAA
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAA
23450541 ATTTTATTGT
Statistics
Matches: 92, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
98 89 0.97
99 3 0.03
ACGTcount: A:0.29, C:0.10, G:0.25, T:0.36
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGGTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:23460133 original size:41 final size:41
Alignment explanation
Indices: 23460080--23460188 Score: 175
Period size: 41 Copynumber: 2.7 Consensus size: 41
23460070 CATTGAATGT
*
23460080 AAGGGG-TGCTAAGTGCAGATTCCCTGAATCACTGATCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
**
23460120 AAGGGGTTGCTAAGTGTGGATTCCCCGAATCACTGATCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
*
23460161 AAGGGGTTGGTAAGTGCAGATTCCCCGA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGA
23460189 GGGGTTGCTA
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
40 6 0.10
41 56 0.90
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (41 bp):
AAGGGGTTGCTAAGTGCAGATTCCCCGAATCACTGATCAAA
Found at i:23460200 original size:26 final size:26
Alignment explanation
Indices: 23460162--23460214 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23460152 CTGATCAAAA
*
23460162 AGGGGTTGGTAAGTGCAGATTCCCCG
1 AGGGGTTGCTAAGTGCAGATTCCCCG
*
23460188 AGGGGTTGCTAAGTGCCGATTCCCCG
1 AGGGGTTGCTAAGTGCAGATTCCCCG
23460214 A
1 A
23460215 ATTATTGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.19, C:0.23, G:0.36, T:0.23
Consensus pattern (26 bp):
AGGGGTTGCTAAGTGCAGATTCCCCG
Found at i:23460280 original size:43 final size:42
Alignment explanation
Indices: 23460188--23460424 Score: 164
Period size: 42 Copynumber: 5.6 Consensus size: 42
23460178 AGATTCCCCG
* * ** *
23460188 AGGGGTTGCTAAGTGCCGATTCC-CCGAATTATTGATTCTAA
1 AGGGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTAA
* *
23460229 AGGTGGTTGCTAAGTGTTGATTCCACCGTGTCCTTGATTGTGAA
1 AGG-GGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGT-AA
* *** ***
23460273 AGGGGTTGCTATGTGCTGATT-CTTTGTATCAC-TGAACAT-A
1 AGGGGTTGCTAAGTGCTGATTCCACCGTATC-CTTGATTGTAA
*
23460313 AGTTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAA
1 AG-GGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGT-AA
* * ** * *
23460357 AAGGGTTGCTATGTGCTGATTCC-TTGTATCAC-TGAATAT-A
1 AGGGGTTGCTAAGTGCTGATTCCACCGTATC-CTTGATTGTAA
*
23460397 AGTTGGTTGCTAAGTGCTGATTCCACCG
1 AG-GGGTTGCTAAGTGCTGATTCCACCG
23460425 AGTAACGGTT
Statistics
Matches: 148, Mismatches: 36, Indels: 23
0.71 0.17 0.11
Matches are distributed among these distances:
40 5 0.03
41 40 0.27
42 48 0.32
43 48 0.32
44 7 0.05
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.35
Consensus pattern (42 bp):
AGGGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTAA
Found at i:23460334 original size:84 final size:84
Alignment explanation
Indices: 23460232--23460424 Score: 341
Period size: 84 Copynumber: 2.3 Consensus size: 84
23460222 ATTCTAAAGG
* * * *
23460232 TGGTTGCTAAGTGTTGATTCCACCGTGTCCTTGATTGTGAAAGGGGTTGCTATGTGCTGATTCTT
1 TGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAAGGGTTGCTATGTGCTGATTCCT
23460297 TGTATCACTGAACATAAGT
66 TGTATCACTGAACATAAGT
23460316 TGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAAGGGTTGCTATGTGCTGATTCCT
1 TGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAAGGGTTGCTATGTGCTGATTCCT
*
23460381 TGTATCACTGAATATAAGT
66 TGTATCACTGAACATAAGT
23460400 TGGTTGCTAAGTGCTGATTCCACCG
1 TGGTTGCTAAGTGCTGATTCCACCG
23460425 AGTAACGGTT
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
84 104 1.00
ACGTcount: A:0.21, C:0.17, G:0.25, T:0.37
Consensus pattern (84 bp):
TGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAAGGGTTGCTATGTGCTGATTCCT
TGTATCACTGAACATAAGT
Done.