Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 83 of 196
Found at i:23836640 original size:44 final size:43
Alignment explanation
Indices: 23836577--23836695 Score: 150
Period size: 44 Copynumber: 2.7 Consensus size: 43
23836567 TGTGTGTTAT
*
23836577 CGTGTAAGACCACGTCTGGGACGTTGGCATTGATTTGTAATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATTGATATGTAA-TTA
* * *
23836621 CGTGTAAGACCATGTCTGGGACAG-TGGCATCGATATGTGATTA
1 CGTGTAAGACCACGTCTGGGAC-GTTGGCATTGATATGTAATTA
** *
23836664 AATGTAAGACCACGTCTGGGGCGTTGGCATTG
1 CGTGTAAGACCACGTCTGGGACGTTGGCATTG
23836696 TACGAGCTTT
Statistics
Matches: 64, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
42 1 0.02
43 28 0.44
44 34 0.53
45 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATTGATATGTAATTA
Found at i:23839977 original size:21 final size:21
Alignment explanation
Indices: 23839951--23840011 Score: 58
Period size: 20 Copynumber: 3.0 Consensus size: 21
23839941 TTATCGTTTT
23839951 TCTTTTCTTTCTCTTTTTCAA
1 TCTTTTCTTTCTCTTTTTCAA
* *
23839972 TCTTTT-TTTTTC-TTTT-AC
1 TCTTTTCTTTCTCTTTTTCAA
*
23839990 T-TTTTCTTTCTTTTCTTTCAA
1 TCTTTTCTTTCTCTT-TTTCAA
23840011 T
1 T
23840012 TTCAATTGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 8
0.70 0.11 0.18
Matches are distributed among these distances:
17 4 0.13
18 6 0.19
19 5 0.16
20 8 0.26
21 8 0.26
ACGTcount: A:0.08, C:0.20, G:0.00, T:0.72
Consensus pattern (21 bp):
TCTTTTCTTTCTCTTTTTCAA
Found at i:23839992 original size:16 final size:15
Alignment explanation
Indices: 23839949--23840007 Score: 57
Period size: 16 Copynumber: 3.8 Consensus size: 15
23839939 TTTTATCGTT
*
23839949 TTTCTTTTCTTTCTC
1 TTTCTTTTCTTTTTC
* *
23839964 TTT-TTCAATCTTTTTT
1 TTTCTT--TTCTTTTTC
23839980 TTTCTTTTACTTTTTC
1 TTTCTTTT-CTTTTTC
23839996 TTTCTTTTCTTT
1 TTTCTTTTCTTT
23840008 CAATTTCAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
14 2 0.06
15 8 0.23
16 23 0.66
17 2 0.06
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTCTTTTCTTTTTC
Found at i:23839995 original size:26 final size:25
Alignment explanation
Indices: 23839927--23839995 Score: 79
Period size: 26 Copynumber: 2.7 Consensus size: 25
23839917 ACTCCCTCAC
*
23839927 TTTTTCCTTTCTTTTT-ATCGTTTT
1 TTTTTCTTTTCTTTTTCATCGTTTT
23839951 TCTTTTCTTTCTCTTTTTCAATC-TTTT
1 T-TTTTCTTT-TCTTTTTC-ATCGTTTT
23839978 TTTTTCTTTTACTTTTTC
1 TTTTTCTTTT-CTTTTTC
23839996 TTTCTTTTCT
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
24 1 0.03
25 8 0.21
26 22 0.56
27 5 0.13
28 3 0.08
ACGTcount: A:0.06, C:0.19, G:0.01, T:0.74
Consensus pattern (25 bp):
TTTTTCTTTTCTTTTTCATCGTTTT
Found at i:23841923 original size:96 final size:96
Alignment explanation
Indices: 23841754--23841944 Score: 319
Period size: 96 Copynumber: 2.0 Consensus size: 96
23841744 TACTTGCTTG
23841754 AATAGTCTCACTTTCTCTTGCCTTTTTCCGCTCACCCTGCCTCTCTAAGTTCTCAAAAGAACTAG
1 AATAGTCTCACTTTCTCTTGCCTTTTTCCGCTCACCCTGCCTCTCTAAGTTCTCAAAAGAACTAG
*
23841819 TTACACTTAAAAGCATTCATTGTGGGTCGAC
66 TTACACTTAAAAGCAGTCATTGTGGGTCGAC
* * *
23841850 AATAGTCTCACTTTCTCTTGCCTTTTTCCGCTCACTCTGCCTCTTTAAGTTCTCAAAAGGACTAG
1 AATAGTCTCACTTTCTCTTGCCTTTTTCCGCTCACCCTGCCTCTCTAAGTTCTCAAAAGAACTAG
* * *
23841915 TTAGACTTAGAAGCAGTCGTTGTGGGTCGA
66 TTACACTTAAAAGCAGTCATTGTGGGTCGA
23841945 TTTGCAAAGC
Statistics
Matches: 88, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
96 88 1.00
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.35
Consensus pattern (96 bp):
AATAGTCTCACTTTCTCTTGCCTTTTTCCGCTCACCCTGCCTCTCTAAGTTCTCAAAAGAACTAG
TTACACTTAAAAGCAGTCATTGTGGGTCGAC
Found at i:23843277 original size:22 final size:23
Alignment explanation
Indices: 23843265--23843307 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
23843255 ACTTAATAAG
23843265 CTTAA-TTAATAAACTGTAAACA
1 CTTAATTTAATAAACTGTAAACA
23843287 CTTAATTTAATAAACTGTAAA
1 CTTAATTTAATAAACTGTAAA
23843308 TAAACATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.49, C:0.12, G:0.05, T:0.35
Consensus pattern (23 bp):
CTTAATTTAATAAACTGTAAACA
Found at i:23845285 original size:32 final size:32
Alignment explanation
Indices: 23845249--23845312 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
23845239 TACCAGTTTC
23845249 CTCTTGCACACAAAAATATCACCATAAACATG
1 CTCTTGCACACAAAAATATCACCATAAACATG
23845281 CTCTTGCACACAAAAATATCACCATAAACATG
1 CTCTTGCACACAAAAATATCACCATAAACATG
23845313 TTTTGTTCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.44, C:0.28, G:0.06, T:0.22
Consensus pattern (32 bp):
CTCTTGCACACAAAAATATCACCATAAACATG
Found at i:23847074 original size:14 final size:14
Alignment explanation
Indices: 23847052--23847097 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
23847042 AAAAAAAAAG
23847052 AGAGAAAGGAGAAGA
1 AGAG-AAGGAGAAGA
*
23847067 AGATAAGGAGAAGA
1 AGAGAAGGAGAAGA
* *
23847081 AGAGAAGAAGAAAA
1 AGAGAAGGAGAAGA
23847095 AGA
1 AGA
23847098 AAGAAAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
14 24 0.89
15 3 0.11
ACGTcount: A:0.63, C:0.00, G:0.35, T:0.02
Consensus pattern (14 bp):
AGAGAAGGAGAAGA
Found at i:23847272 original size:19 final size:19
Alignment explanation
Indices: 23847248--23847480 Score: 121
Period size: 19 Copynumber: 12.2 Consensus size: 19
23847238 TTTGGATTAG
*
23847248 AATTTTGTATGAATATTCT
1 AATTTTGTATGAATATTGT
23847267 AATTTTTTTGTATGAATATTGT
1 AA---TTTTGTATGAATATTGT
*
23847289 AATTTTTTATGAATATTGT
1 AATTTTGTATGAATATTGT
*
23847308 AATTATTTTAT-AATTAAATTTGT
1 AATT-TTGTATGAA-T--A-TTGT
* * *
23847331 -ATTTATAGTTTTGGAT-TAGT
1 AATTT-T-G-TATGAATATTGT
*
23847351 -ATTTTGCATGAATATTGT
1 AATTTTGTATGAATATTGT
*
23847369 AATTTTGTGTGAATATTGT
1 AATTTTGTATGAATATTGT
*
23847388 AATTTT-TTTG--TA-TG-
1 AATTTTGTATGAATATTGT
* * *
23847402 AATATTG--T-AATTTTAT
1 AATTTTGTATGAATATTGT
* **
23847418 AATTTTATATGAATATTAC
1 AATTTTGTATGAATATTGT
23847437 AATTTTTTTGTATGAATATTGT
1 AA---TTTTGTATGAATATTGT
23847459 AATTTTGTATGAATATTGT
1 AATTTTGTATGAATATTGT
23847478 AAT
1 AAT
23847481 GTCGGGATAT
Statistics
Matches: 166, Mismatches: 23, Indels: 50
0.69 0.10 0.21
Matches are distributed among these distances:
13 1 0.01
14 6 0.04
15 3 0.02
16 7 0.04
17 4 0.02
18 8 0.05
19 75 0.45
20 14 0.08
21 1 0.01
22 39 0.23
23 4 0.02
24 3 0.02
25 1 0.01
ACGTcount: A:0.31, C:0.01, G:0.12, T:0.55
Consensus pattern (19 bp):
AATTTTGTATGAATATTGT
Found at i:23847277 original size:22 final size:22
Alignment explanation
Indices: 23847250--23847316 Score: 95
Period size: 22 Copynumber: 3.2 Consensus size: 22
23847240 TGGATTAGAA
*
23847250 TTTTGTATGAATATTCTAATTT
1 TTTTGTATGAATATTGTAATTT
23847272 TTTTGTATGAATATTGTAA--T
1 TTTTGTATGAATATTGTAATTT
*
23847292 TTTT-TATGAATATTGTAATTA
1 TTTTGTATGAATATTGTAATTT
23847313 TTTT
1 TTTT
23847317 ATAATTAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
19 14 0.34
20 5 0.12
21 4 0.10
22 18 0.44
ACGTcount: A:0.28, C:0.01, G:0.10, T:0.60
Consensus pattern (22 bp):
TTTTGTATGAATATTGTAATTT
Found at i:23847293 original size:41 final size:41
Alignment explanation
Indices: 23847248--23847480 Score: 183
Period size: 41 Copynumber: 5.5 Consensus size: 41
23847238 TTTGGATTAG
*
23847248 AATTTTGTATGAATATTCTAATTTTTTTGTATGAATATTGT
1 AATTTTGTATGAATATTGTAATTTTTTTGTATGAATATTGT
* *
23847289 AATTTTTTATGAATATTGTAA-TTATTT-TAT--A-A-T-T
1 AATTTTGTATGAATATTGTAATTTTTTTGTATGAATATTGT
* ** * * *
23847323 AAATTTGTATTTATAGTTTTGGATTAGTATTTTGCATGAATATTGT
1 AATTTTGTATGAATA-TTGT-AATT--T-TTTTGTATGAATATTGT
*
23847369 AATTTTGTGTGAATATTGTAATTTTTTTGTATGAATATTGTAATTTTAT
1 AATTTTGTATGAATATTGTAATTTTTTTGTATGAATATTG--------T
* **
23847418 AATTTTATATGAATATTACAATTTTTTTGTATGAATATTGT
1 AATTTTGTATGAATATTGTAATTTTTTTGTATGAATATTGT
23847459 AATTTTGTATGAATATTGTAAT
1 AATTTTGTATGAATATTGTAAT
23847481 GTCGGGATAT
Statistics
Matches: 147, Mismatches: 25, Indels: 40
0.69 0.12 0.19
Matches are distributed among these distances:
34 12 0.08
35 4 0.03
36 2 0.01
37 2 0.01
39 4 0.03
40 8 0.05
41 56 0.38
42 1 0.01
43 1 0.01
44 4 0.03
45 4 0.03
46 12 0.08
49 37 0.25
ACGTcount: A:0.31, C:0.01, G:0.12, T:0.55
Consensus pattern (41 bp):
AATTTTGTATGAATATTGTAATTTTTTTGTATGAATATTGT
Found at i:23847311 original size:102 final size:100
Alignment explanation
Indices: 23847179--23847413 Score: 264
Period size: 102 Copynumber: 2.3 Consensus size: 100
23847169 ATTTTAGAAG
* * * *
23847179 ATATTGTGAATTTTTTTATTAAT-TAT-TAATTA-TAAATTATCTATATTTAGTGTTTATAG-TT
1 ATATTGT-AATTTTTTTATGAATAT-TGTAATTATTAAATAAT-TAAATTT-GTATTTATAGTTT
*
23847240 TGGATTAGAATTTTGTATGAATATTCTAATTTTTTTGTATGA
62 TGGATTAGAATTTTGCATGAATATTCTAA---TTTTGTATGA
**
23847282 ATATTGTAA-TTTTTTATGAATATTGTAATTATTTTATAATTAAATTTGTATTTATAGTTTTGGA
1 ATATTGTAATTTTTTTATGAATATTGTAATTATTAAATAATTAAATTTGTATTTATAGTTTTGGA
* * *
23847346 TTAGTATTTTGCATGAATATTGTAATTTTGTGTGA
66 TTAGAATTTTGCATGAATATTCTAATTTTGTATGA
23847381 ATATTGTAATTTTTTTGTATGAATATTGTAATT
1 ATATTGTAA-TTTTTT-TATGAATATTGTAATT
23847414 TTATAATTTT
Statistics
Matches: 115, Mismatches: 10, Indels: 15
0.82 0.07 0.11
Matches are distributed among these distances:
99 18 0.16
101 26 0.23
102 59 0.51
103 12 0.10
ACGTcount: A:0.31, C:0.01, G:0.13, T:0.55
Consensus pattern (100 bp):
ATATTGTAATTTTTTTATGAATATTGTAATTATTAAATAATTAAATTTGTATTTATAGTTTTGGA
TTAGAATTTTGCATGAATATTCTAATTTTGTATGA
Found at i:23847421 original size:49 final size:49
Alignment explanation
Indices: 23847368--23847464 Score: 158
Period size: 49 Copynumber: 2.0 Consensus size: 49
23847358 ATGAATATTG
* * **
23847368 TAATTTTGTGTGAATATTGTAATTTTTTTGTATGAATATTGTAATTTTA
1 TAATTTTATATGAATATTACAATTTTTTTGTATGAATATTGTAATTTTA
23847417 TAATTTTATATGAATATTACAATTTTTTTGTATGAATATTGTAATTTT
1 TAATTTTATATGAATATTACAATTTTTTTGTATGAATATTGTAATTTT
23847465 GTATGAATAT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.31, C:0.01, G:0.11, T:0.57
Consensus pattern (49 bp):
TAATTTTATATGAATATTACAATTTTTTTGTATGAATATTGTAATTTTA
Found at i:23847602 original size:60 final size:60
Alignment explanation
Indices: 23847521--23847642 Score: 174
Period size: 60 Copynumber: 2.0 Consensus size: 60
23847511 TGTATGAATA
* * * * *
23847521 TTGTAATTATTTTATAATTAATTTGTTAGTAATTTAGGATTATGTTATAAATTTTTGTGT
1 TTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
*
23847581 TTGTAATTA-TTTAAAATTTAATTTATTAGTAATTTAGGATTAAGCTATAAGTTGTTGTGT
1 TTGTAATTATTTTAAAA-TTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
23847641 TT
1 TT
23847643 AGTTTAGTAT
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
59 6 0.11
60 49 0.89
ACGTcount: A:0.31, C:0.01, G:0.14, T:0.54
Consensus pattern (60 bp):
TTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
Found at i:23847727 original size:37 final size:37
Alignment explanation
Indices: 23847676--23847756 Score: 144
Period size: 37 Copynumber: 2.2 Consensus size: 37
23847666 CATATAAAGT
23847676 TTATAAAAAAATTAAAAATCATTTTATTAAAAGCTTAA
1 TTAT-AAAAAATTAAAAATCATTTTATTAAAAGCTTAA
*
23847714 TTATAAAAAATTAAAAATCATTTTATTAAAAGTTTAA
1 TTATAAAAAATTAAAAATCATTTTATTAAAAGCTTAA
23847751 TTATAA
1 TTATAA
23847757 CTGACTTTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
37 38 0.90
38 4 0.10
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (37 bp):
TTATAAAAAATTAAAAATCATTTTATTAAAAGCTTAA
Found at i:23848025 original size:122 final size:122
Alignment explanation
Indices: 23847808--23848054 Score: 449
Period size: 122 Copynumber: 2.0 Consensus size: 122
23847798 TTTTATATAA
23847808 TGTAACTTTTATAAAATTTAATTTTATTTGATTTTGTATTTATTTAACAGTAATTATTGATTTTT
1 TGTAACTTTTATAAAATTTAATTTTATTTGATTTTGTATTTATTTAACAGTAATTATTGATTTTT
*
23847873 AAAAACAAATTAACTGAATTCATTTTTTTGATTGCAGATTTGCAGGATCAATAAAAC
66 AAAAACAAATTAACTGAATTCATTTTTTTGATTGCAGATTTGCAAGATCAATAAAAC
*
23847930 TGTAACTTTTATATAATTTAATTTTATTTGATTTTGTATTTATTTAACAGTAATTATTGATTTTT
1 TGTAACTTTTATAAAATTTAATTTTATTTGATTTTGTATTTATTTAACAGTAATTATTGATTTTT
** *
23847995 TGAAACAAATTAACTGAATTTATTTTTTTGATTGCAGATTTGCAAGATCAATAAAAC
66 AAAAACAAATTAACTGAATTCATTTTTTTGATTGCAGATTTGCAAGATCAATAAAAC
23848052 TGT
1 TGT
23848055 TTTATTGATC
Statistics
Matches: 120, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
122 120 1.00
ACGTcount: A:0.35, C:0.07, G:0.10, T:0.48
Consensus pattern (122 bp):
TGTAACTTTTATAAAATTTAATTTTATTTGATTTTGTATTTATTTAACAGTAATTATTGATTTTT
AAAAACAAATTAACTGAATTCATTTTTTTGATTGCAGATTTGCAAGATCAATAAAAC
Found at i:23848174 original size:16 final size:15
Alignment explanation
Indices: 23848133--23848183 Score: 57
Period size: 16 Copynumber: 3.3 Consensus size: 15
23848123 AATAAATACA
*
23848133 AAATCAAATAAAATT
1 AAATCATATAAAATT
*
23848148 AAATTATATAAAATTT
1 AAATCATATAAAA-TT
*
23848164 ACATCATATAAAAATT
1 AAATCATAT-AAAATT
23848180 AAAT
1 AAAT
23848184 GAGTTAACAA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
15 11 0.38
16 14 0.48
17 4 0.14
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (15 bp):
AAATCATATAAAATT
Found at i:23848259 original size:37 final size:38
Alignment explanation
Indices: 23848218--23848298 Score: 146
Period size: 37 Copynumber: 2.2 Consensus size: 38
23848208 AAAAAGTCAA
23848218 TTATAATTAAACTTTTAATAAAATAATTTTTAA-TTTT
1 TTATAATTAAACTTTTAATAAAATAATTTTTAATTTTT
*
23848255 TTATAATTAAACTTTTAATAAAATGATTTTTAATTTTT
1 TTATAATTAAACTTTTAATAAAATAATTTTTAATTTTT
23848293 TTATAA
1 TTATAA
23848299 ACTTTATATG
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
37 32 0.76
38 10 0.24
ACGTcount: A:0.42, C:0.02, G:0.01, T:0.54
Consensus pattern (38 bp):
TTATAATTAAACTTTTAATAAAATAATTTTTAATTTTT
Found at i:23848408 original size:60 final size:60
Alignment explanation
Indices: 23848332--23848453 Score: 174
Period size: 60 Copynumber: 2.0 Consensus size: 60
23848322 ATACTAAACT
* * * * *
23848332 AAACACAACAACTTATAGCTTAATCCTAAATTACTAATAAATTAAATT-TTAAATAATTAC
1 AAACACAAAAACTTATAACATAATCCTAAATTACTAACAAATT-AATTATAAAATAATTAC
*
23848392 AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTATAAAATAATTAC
1 AAACACAAAAACTTATAACATAATCCTAAATTACTAACAAATTAATTATAAAATAATTAC
23848452 AA
1 AA
23848454 TATTCATACA
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
59 4 0.07
60 51 0.93
ACGTcount: A:0.54, C:0.14, G:0.01, T:0.31
Consensus pattern (60 bp):
AAACACAAAAACTTATAACATAATCCTAAATTACTAACAAATTAATTATAAAATAATTAC
Found at i:23848481 original size:8 final size:8
Alignment explanation
Indices: 23848468--23848634 Score: 87
Period size: 8 Copynumber: 20.4 Consensus size: 8
23848458 CATACAAAAA
23848468 ATTACAAT
1 ATTACAAT
23848476 ATTACAAT
1 ATTACAAT
* * *
23848484 ATATCCCGAC
1 AT-T-ACAAT
23848494 ATTACAAT
1 ATTACAAT
*
23848502 ATTCATACAAA
1 A-T--TACAAT
23848513 ATTACAAT
1 ATTACAAT
23848521 ATTACAAT
1 ATTACAAT
*
23848529 ATTCATACAAA
1 A-T--TACAAT
23848540 ATTACAAT
1 ATTACAAT
23848548 ATTACAAT
1 ATTACAAT
*
23848556 ATTCATACAAA
1 A-T--TACAAT
23848567 ATTACAAT
1 ATTACAAT
23848575 ATTACAAT
1 ATTACAAT
23848583 ATT-C-AT
1 ATTACAAT
** * *
23848589 ACAAAAAA
1 ATTACAAT
23848597 ATTACAAT
1 ATTACAAT
23848605 ATT-C-AT
1 ATTACAAT
23848611 A-TA-AA-
1 ATTACAAT
*
23848616 ATTATAAT
1 ATTACAAT
23848624 ATTACAAT
1 ATTACAAT
23848632 ATT
1 ATT
23848635 CATACAAAAA
Statistics
Matches: 120, Mismatches: 21, Indels: 36
0.68 0.12 0.20
Matches are distributed among these distances:
5 2 0.02
6 9 0.08
7 4 0.03
8 75 0.62
9 5 0.04
10 7 0.06
11 18 0.15
ACGTcount: A:0.51, C:0.14, G:0.01, T:0.34
Consensus pattern (8 bp):
ATTACAAT
Found at i:23848518 original size:19 final size:19
Alignment explanation
Indices: 23848494--23848769 Score: 109
Period size: 19 Copynumber: 15.2 Consensus size: 19
23848484 ATATCCCGAC
23848494 ATTACAATATTCATACAAA
1 ATTACAATATTCATACAAA
23848513 ATTACAATA-T--TACAATA
1 ATTACAATATTCATACAA-A
* * *
23848530 TTCATACAA-AAT--TACAAT
1 AT--TACAATATTCATACAAA
23848548 ATTACAATATTCATACAAA
1 ATTACAATATTCATACAAA
*
23848567 ATTACAATA-T--TACAAT
1 ATTACAATATTCATACAAA
*
23848583 ATT-C-ATA--CA-AAAAA
1 ATTACAATATTCATACAAA
*
23848597 ATTACAATATTCATATAAA
1 ATTACAATATTCATACAAA
* *
23848616 ATTATAATA-T--TACAAT
1 ATTACAATATTCATACAAA
*
23848632 ATT-C-ATA--CA-AAAAA
1 ATTACAATATTCATACAAA
23848646 ATTACAATATTCATACAAA
1 ATTACAATATTCATACAAA
* * *
23848665 A-TACTAAT-CTAAAACTATAA
1 ATTAC-AATATTCATAC-A-AA
*
23848685 A-TACAAATTTAATT-ATAAAATA
1 ATTAC-AA--T-ATTCATACAA-A
*
23848707 ATTACAATATTCATAAAAA
1 ATTACAATATTCATACAAA
23848726 ATTACAATATTCATACAAAAAA
1 ATTACAATATTCATAC---AAA
*
23848748 ATTAGAATATTCATACAAA
1 ATTACAATATTCATACAAA
23848767 ATT
1 ATT
23848770 CTAATCCAAA
Statistics
Matches: 198, Mismatches: 25, Indels: 68
0.68 0.09 0.23
Matches are distributed among these distances:
14 18 0.09
15 3 0.02
16 31 0.16
17 4 0.02
18 16 0.08
19 80 0.40
20 15 0.08
21 1 0.01
22 24 0.12
23 5 0.03
24 1 0.01
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (19 bp):
ATTACAATATTCATACAAA
Found at i:23848530 original size:27 final size:27
Alignment explanation
Indices: 23848494--23848666 Score: 258
Period size: 27 Copynumber: 6.8 Consensus size: 27
23848484 ATATCCCGAC
23848494 ATTACAATATTCATACAAAATTACAAT
1 ATTACAATATTCATACAAAATTACAAT
23848521 ATTACAATATTCATACAAAATTACAAT
1 ATTACAATATTCATACAAAATTACAAT
23848548 ATTACAATATTCATACAAAATTACAAT
1 ATTACAATATTCATACAAAATTACAAT
23848575 ATTACAATATTCATAC-AAA--A-AA-
1 ATTACAATATTCATACAAAATTACAAT
* *
23848597 ATTACAATATTCATATAAAATTATAAT
1 ATTACAATATTCATACAAAATTACAAT
23848624 ATTACAATATTCATAC-AAA--A-AA-
1 ATTACAATATTCATACAAAATTACAAT
23848646 ATTACAATATTCATACAAAAT
1 ATTACAATATTCATACAAAAT
23848667 ACTAATCTAA
Statistics
Matches: 137, Mismatches: 2, Indels: 17
0.88 0.01 0.11
Matches are distributed among these distances:
22 31 0.23
23 10 0.07
24 2 0.01
25 1 0.01
26 8 0.06
27 85 0.62
ACGTcount: A:0.54, C:0.13, G:0.00, T:0.33
Consensus pattern (27 bp):
ATTACAATATTCATACAAAATTACAAT
Found at i:23848625 original size:49 final size:49
Alignment explanation
Indices: 23848441--23848769 Score: 303
Period size: 49 Copynumber: 6.6 Consensus size: 49
23848431 AATTAATTAT
*
23848441 AAAATAATTACAATATTCATACAAAAAATTACAATATTACAATA-T-AT-C
1 AAAAAAATTACAATATTCATAC--AAAATTACAATATTACAATATTCATAC
*** *
23848489 -CCGACATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
1 AAAAAAATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
23848537 AAAATTACAATATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
1 -AAA--A-AA-ATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
* *
23848591 AAAAAAATTACAATATTCATATAAAATTATAATATTACAATATTCATAC
1 AAAAAAATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
* * **
23848640 AAAAAAATTACAATATTCATACAAAA-TACTAAT-CTAAAACTATAAATAC
1 AAAAAAATTACAATATTCATACAAAATTAC-AATATTACAA-TATTCATAC
** * * * * * *
23848689 AAATTTAATTATAA-AATAATTACAATATTCATAAAAAATTACAATATTCATAC
1 AAA-AAAATTACAATATTCA-TACAA-AAT--TACAATATTACAATATTCATAC
*
23848742 AAAAAAATTAGAATATTCATACAAAATT
1 AAAAAAATTACAATATTCATACAAAATT
23848770 CTAATCCAAA
Statistics
Matches: 227, Mismatches: 35, Indels: 37
0.76 0.12 0.12
Matches are distributed among these distances:
45 20 0.09
46 1 0.00
47 18 0.08
48 7 0.03
49 83 0.37
50 14 0.06
51 4 0.02
52 12 0.05
53 19 0.08
54 49 0.22
ACGTcount: A:0.54, C:0.13, G:0.01, T:0.32
Consensus pattern (49 bp):
AAAAAAATTACAATATTCATACAAAATTACAATATTACAATATTCATAC
Found at i:23848746 original size:22 final size:22
Alignment explanation
Indices: 23848701--23848767 Score: 95
Period size: 22 Copynumber: 3.2 Consensus size: 22
23848691 ATTTAATTAT
*
23848701 AAAATAATTACAATATTCAT--
1 AAAAAAATTACAATATTCATAC
23848721 -AAAAAATTACAATATTCATAC
1 AAAAAAATTACAATATTCATAC
*
23848742 AAAAAAATTAGAATATTCATAC
1 AAAAAAATTACAATATTCATAC
23848764 AAAA
1 AAAA
23848768 TTCTAATCCA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
19 18 0.43
22 24 0.57
ACGTcount: A:0.60, C:0.10, G:0.01, T:0.28
Consensus pattern (22 bp):
AAAAAAATTACAATATTCATAC
Found at i:23848853 original size:12 final size:12
Alignment explanation
Indices: 23848836--23848861 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
23848826 AAAAATTCAC
23848836 AATATCTTCTAA
1 AATATCTTCTAA
23848848 AATATCTTCTAA
1 AATATCTTCTAA
23848860 AA
1 AA
23848862 AATTCACAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (12 bp):
AATATCTTCTAA
Found at i:23864377 original size:19 final size:18
Alignment explanation
Indices: 23864350--23864400 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
23864340 GTAAGGATTA
*
23864350 ATTTCATTTTTTTAATATT
1 ATTTAATTTTTTTAAT-TT
*
23864369 ATTTAATTTTTATAATTT
1 ATTTAATTTTTTTAATTT
*
23864387 AATTAATATTTTTT
1 ATTTAAT-TTTTTT
23864401 TATAATAGCC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 8 0.30
19 19 0.70
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (18 bp):
ATTTAATTTTTTTAATTT
Found at i:23866964 original size:47 final size:47
Alignment explanation
Indices: 23866898--23867182 Score: 446
Period size: 47 Copynumber: 6.1 Consensus size: 47
23866888 GAAATGATAG
23866898 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
23866945 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
23866992 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
23867039 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
23867086 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * ** *
23867132 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTCCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
23867179 TAAG
1 TAAG
23867183 TCGCGAAGGG
Statistics
Matches: 221, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 40 0.18
47 181 0.82
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:23867357 original size:37 final size:37
Alignment explanation
Indices: 23867301--23867379 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
23867291 CAGAGCTCTA
* * *
23867301 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
23867338 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
23867375 AAGAC
1 AAGAC
23867380 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:23870082 original size:18 final size:18
Alignment explanation
Indices: 23870059--23870119 Score: 104
Period size: 18 Copynumber: 3.4 Consensus size: 18
23870049 TGCCAAATGC
23870059 GTATCCTAACTCTTATGT
1 GTATCCTAACTCTTATGT
23870077 GTATCCTAACTCTTATGT
1 GTATCCTAACTCTTATGT
* *
23870095 GTATCCTAACCCTTATAT
1 GTATCCTAACTCTTATGT
23870113 GTATCCT
1 GTATCCT
23870120 TTTTCCACTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 41 1.00
ACGTcount: A:0.23, C:0.25, G:0.10, T:0.43
Consensus pattern (18 bp):
GTATCCTAACTCTTATGT
Found at i:23871438 original size:10 final size:10
Alignment explanation
Indices: 23871425--23871569 Score: 55
Period size: 10 Copynumber: 15.5 Consensus size: 10
23871415 ACATGTGGCA
23871425 AAAAAATTAT
1 AAAAAATTAT
23871435 -AAAAA--AT
1 AAAAAATTAT
*
23871442 -AAAATTTAT
1 AAAAAATTAT
23871451 -AAAAATTAT
1 AAAAAATTAT
* **
23871460 TAAATTTTA-
1 AAAAAATTAT
*
23871469 ATAAAAATGAT
1 A-AAAAATTAT
*
23871480 AAAATA-T-T
1 AAAAAATTAT
23871488 A-AAAATTAT
1 AAAAAATTAT
* *
23871497 -AAAATTTGT
1 AAAAAATTAT
23871506 AAAAAA-TAT
1 AAAAAATTAT
*
23871515 -TAAAATATAT
1 AAAAAAT-TAT
*
23871525 AAAAAAATTGT
1 -AAAAAATTAT
**
23871536 AAAATTTTAT
1 AAAAAATTAT
*
23871546 -AAAAATCAT
1 AAAAAATTAT
23871555 AAAAAATTAT
1 AAAAAATTAT
23871565 AAAAA
1 AAAAA
23871570 TGCATAAAAA
Statistics
Matches: 96, Mismatches: 25, Indels: 28
0.64 0.17 0.19
Matches are distributed among these distances:
7 9 0.09
8 7 0.07
9 30 0.31
10 42 0.44
11 3 0.03
12 5 0.05
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.33
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:23871468 original size:19 final size:19
Alignment explanation
Indices: 23871441--23871570 Score: 79
Period size: 19 Copynumber: 6.8 Consensus size: 19
23871431 TTATAAAAAA
*
23871441 TAAAATTTATAAAAATTAT
1 TAAATTTTATAAAAATTAT
*
23871460 TAAATTTTAATAAAAATGA-
1 TAAATTTT-ATAAAAATTAT
* *
23871479 TAAAATAT-TAAAAATTAT
1 TAAATTTTATAAAAATTAT
*
23871497 AAAATTTGTA-AAAAA-TAT
1 TAAATTT-TATAAAAATTAT
* * *
23871515 TAAAATATATAAAAAAATTGT
1 T-AAAT-TTTATAAAAATTAT
* *
23871536 AAAATTTTATAAAAATCAT
1 TAAATTTTATAAAAATTAT
* **
23871555 AAAAAATTATAAAAAT
1 TAAATTTTATAAAAAT
23871571 GCATAAAAAA
Statistics
Matches: 85, Mismatches: 18, Indels: 16
0.71 0.15 0.13
Matches are distributed among these distances:
17 8 0.09
18 7 0.08
19 49 0.58
20 19 0.22
21 2 0.02
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.35
Consensus pattern (19 bp):
TAAATTTTATAAAAATTAT
Found at i:23871493 original size:29 final size:29
Alignment explanation
Indices: 23871439--23871494 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
23871429 AATTATAAAA
* * *
23871439 AATAAAATTTATAAAAATTATTAAATTTT
1 AATAAAAATGATAAAAATTATAAAATTTT
23871468 AATAAAAATGATAAAATATTA-AAAATT
1 AATAAAAATGATAAAA-ATTATAAAATT
23871495 ATAAAATTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 19 0.83
30 4 0.17
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (29 bp):
AATAAAAATGATAAAAATTATAAAATTTT
Found at i:23871539 original size:9 final size:9
Alignment explanation
Indices: 23871426--23871570 Score: 91
Period size: 9 Copynumber: 15.7 Consensus size: 9
23871416 CATGTGGCAA
23871426 AAAAATTAT
1 AAAAATTAT
23871435 AAAAA--AT
1 AAAAATTAT
*
23871442 AAAATTTAT
1 AAAAATTAT
23871451 AAAAATTATT
1 AAAAATTA-T
**
23871461 AAATTTTAAT
1 AAAAATT-AT
*
23871471 AAAAATGAT
1 AAAAATTAT
23871480 -AAAA-TATT
1 AAAAATTA-T
23871488 AAAAATTAT
1 AAAAATTAT
* *
23871497 AAAATTTGT
1 AAAAATTAT
*
23871506 AAAAAATATT
1 AAAAATTA-T
*
23871516 AAAATATATAA
1 AAAA-AT-TAT
*
23871527 AAAAATTGT
1 AAAAATTAT
*
23871536 AAAATTTTAT
1 AAAA-ATTAT
*
23871546 AAAAATCAT
1 AAAAATTAT
23871555 AAAAAATTAT
1 -AAAAATTAT
23871565 AAAAAT
1 AAAAAT
23871571 GCATAAAAAA
Statistics
Matches: 102, Mismatches: 22, Indels: 24
0.69 0.15 0.16
Matches are distributed among these distances:
7 7 0.07
8 5 0.05
9 47 0.46
10 35 0.34
11 6 0.06
12 2 0.02
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.34
Consensus pattern (9 bp):
AAAAATTAT
Found at i:23871541 original size:39 final size:40
Alignment explanation
Indices: 23871442--23871569 Score: 119
Period size: 39 Copynumber: 3.3 Consensus size: 40
23871432 TATAAAAAAT
* * *
23871442 AAAATT-TATAAAAATTATTAAATTTTAATAAAAATGAT--
1 AAAATTATAAAAAAATTATAAAATTTT-ATAAAAATCATAA
* *
23871480 AAAA-TAT-TAAAAATTATAAAATTTGTA-AAAAAT-AT-T
1 AAAATTATAAAAAAATTATAAAATTT-TATAAAAATCATAA
*
23871516 AAAATATATAAAAAAATTGTAAAATTTTATAAAAATCATAA
1 AAAAT-TATAAAAAAATTATAAAATTTTATAAAAATCATAA
23871557 AAAATTATAAAAA
1 AAAATTATAAAAA
23871570 TGCATAAAAA
Statistics
Matches: 77, Mismatches: 4, Indels: 16
0.79 0.04 0.16
Matches are distributed among these distances:
35 2 0.03
36 10 0.13
37 18 0.23
38 11 0.14
39 21 0.27
40 10 0.13
41 5 0.06
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.34
Consensus pattern (40 bp):
AAAATTATAAAAAAATTATAAAATTTTATAAAAATCATAA
Found at i:23871578 original size:19 final size:19
Alignment explanation
Indices: 23871425--23871580 Score: 74
Period size: 20 Copynumber: 8.3 Consensus size: 19
23871415 ACATGTGGCA
23871425 AAAAAATTATAAAAA--AT
1 AAAAAATTATAAAAATCAT
* *
23871442 -AAAATTTATAAAAATTAT
1 AAAAAATTATAAAAATCAT
* ** *
23871460 TAAATTTTAATAAAAATGAT
1 AAAAAATT-ATAAAAATCAT
* *
23871480 AAAATA-T-TAAAAATTAT
1 AAAAAATTATAAAAATCAT
* *
23871497 -AAAATTTGTAAAAAAT-ATT
1 AAAAAATTAT-AAAAATCA-T
* * **
23871516 AAAATATATAAAAAAATTGT
1 AAAAAAT-TATAAAAATCAT
**
23871536 AAAATTTTATAAAAATCAT
1 AAAAAATTATAAAAATCAT
23871555 AAAAAATTATAAAAATGCAT
1 AAAAAATTATAAAAAT-CAT
23871575 AAAAAA
1 AAAAAA
23871581 AAGGTCATTT
Statistics
Matches: 108, Mismatches: 19, Indels: 21
0.73 0.13 0.14
Matches are distributed among these distances:
16 16 0.15
17 10 0.09
18 4 0.04
19 37 0.34
20 40 0.37
21 1 0.01
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (19 bp):
AAAAAATTATAAAAATCAT
Found at i:23871873 original size:19 final size:19
Alignment explanation
Indices: 23871844--23871935 Score: 73
Period size: 19 Copynumber: 4.7 Consensus size: 19
23871834 TTTTTCTATA
23871844 TTTATATATATTTTAAAATT
1 TTTATA-ATATTTTAAAATT
*
23871864 TTTATAATATTTTATAATT
1 TTTATAATATTTTAAAATT
* *
23871883 TTTAATAAT-TTTTGAATTT
1 TTT-ATAATATTTTAAAATT
* *
23871902 TTTAATTAA-AATTTAATCATT
1 TTT-A-TAATATTTTAA-AATT
23871923 TTTATAAT-TTTTA
1 TTTATAATATTTTA
23871936 TTGATTTTTA
Statistics
Matches: 58, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
19 34 0.59
20 19 0.33
21 5 0.09
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.61
Consensus pattern (19 bp):
TTTATAATATTTTAAAATT
Found at i:23871878 original size:10 final size:9
Alignment explanation
Indices: 23871825--23871946 Score: 68
Period size: 10 Copynumber: 12.6 Consensus size: 9
23871815 TCTATAAAAA
23871825 TTTATAATT
1 TTTATAATT
* * *
23871834 TTTTTCTATA
1 TTTAT-AATT
23871844 TTTATATATAT
1 TTTATA-AT-T
*
23871855 TTTAAAATT
1 TTTATAATT
23871864 TTTATAATAT
1 TTTATAAT-T
23871874 TTTATAATT
1 TTTATAATT
23871883 TTTAATAATT
1 TTT-ATAATT
*
23871893 TTT-GAATT
1 TTTATAATT
23871901 TTT-TAATT
1 TTTATAATT
*
23871909 AAAATTTAATCATT
1 ----TTT-ATAATT
23871923 TTTATAATT
1 TTTATAATT
*
23871932 TTTATTGATT
1 TTTA-TAATT
23871942 TTTAT
1 TTTAT
23871947 TTTTTACCAT
Statistics
Matches: 88, Mismatches: 13, Indels: 24
0.70 0.10 0.19
Matches are distributed among these distances:
8 11 0.12
9 26 0.30
10 39 0.44
11 5 0.06
12 3 0.03
14 4 0.05
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.63
Consensus pattern (9 bp):
TTTATAATT
Found at i:23873728 original size:5 final size:5
Alignment explanation
Indices: 23873718--23873743 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
23873708 CAATGCAAAC
23873718 TTTTA TTTTA TTTTA TTTTA TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA T
23873744 AATTCTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:23881846 original size:40 final size:40
Alignment explanation
Indices: 23881786--23881862 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
23881776 ATTTTCCCCG
* * *
23881786 AAATCGCGTCCATGTCAGCGCGATTTGCTTACGTGGACAC
1 AAATCGCGCCCATGTAAGCGCGATTTGCTGACGTGGACAC
23881826 AAATCGCGCCCATGTAAGCGCGATTTGCTGACGTGGA
1 AAATCGCGCCCATGTAAGCGCGATTTGCTGACGTGGA
23881863 AGCAATAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.23
Consensus pattern (40 bp):
AAATCGCGCCCATGTAAGCGCGATTTGCTGACGTGGACAC
Found at i:23883903 original size:30 final size:30
Alignment explanation
Indices: 23883861--23883927 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
23883851 CCTATGTCCC
* *
23883861 CCTATGTTCCTGAGAACTCGAAAGCCCA-T
1 CCTATCTTCCTGACAACTCGAAAGCCCATT
* *
23883890 CCATATCTTCCTGACAACTCTAAAGGCCATT
1 CC-TATCTTCCTGACAACTCGAAAGCCCATT
23883921 CCTATCT
1 CCTATCT
23883928 CCCCTACGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 2 0.06
30 27 0.84
31 3 0.09
ACGTcount: A:0.27, C:0.33, G:0.12, T:0.28
Consensus pattern (30 bp):
CCTATCTTCCTGACAACTCGAAAGCCCATT
Found at i:23889843 original size:29 final size:29
Alignment explanation
Indices: 23889789--23889846 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
23889779 AAAAGAAATT
**
23889789 GAAAGAAAAAGAGAGCTTGAACGAAAAGA
1 GAAAGAAAAAGAGAGCGAGAACGAAAAGA
*
23889818 GAAAGAAAAAGAGTGCGAGCAA-GAAAAGA
1 GAAAGAAAAAGAGAGCGAG-AACGAAAAGA
23889847 ACCTTTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 23 0.92
30 2 0.08
ACGTcount: A:0.59, C:0.07, G:0.29, T:0.05
Consensus pattern (29 bp):
GAAAGAAAAAGAGAGCGAGAACGAAAAGA
Found at i:23899109 original size:27 final size:27
Alignment explanation
Indices: 23899079--23899131 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
23899069 AACTATGTCG
*
23899079 TTGTATATTATTGTCTTAATTTTTTCA
1 TTGTATACTATTGTCTTAATTTTTTCA
23899106 TTGTATACTATTGTCTTAATTTTTTC
1 TTGTATACTATTGTCTTAATTTTTTC
23899132 TTTCATCTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.21, C:0.09, G:0.08, T:0.62
Consensus pattern (27 bp):
TTGTATACTATTGTCTTAATTTTTTCA
Found at i:23899249 original size:8 final size:8
Alignment explanation
Indices: 23899236--23899260 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
23899226 CCTATATTGT
23899236 TAATTAAA
1 TAATTAAA
23899244 TAATTAAA
1 TAATTAAA
23899252 TAATTAAA
1 TAATTAAA
23899260 T
1 T
23899261 GCGAACATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (8 bp):
TAATTAAA
Found at i:23899488 original size:17 final size:17
Alignment explanation
Indices: 23899466--23899501 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
23899456 AATTCAGTCG
23899466 TATAAGATTATTTTTCA
1 TATAAGATTATTTTTCA
23899483 TATAAGATTATTTTTCA
1 TATAAGATTATTTTTCA
23899500 TA
1 TA
23899502 CCTTAATTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.06, G:0.06, T:0.53
Consensus pattern (17 bp):
TATAAGATTATTTTTCA
Found at i:23902249 original size:24 final size:24
Alignment explanation
Indices: 23902194--23902252 Score: 100
Period size: 24 Copynumber: 2.5 Consensus size: 24
23902184 GGTTTAATGC
* *
23902194 AAATGGAGATATTTTGGAGAGATG
1 AAATGGATATATTTTGGAAAGATG
23902218 AAATGGATATATTTTGGAAAGATG
1 AAATGGATATATTTTGGAAAGATG
23902242 AAATGGATATA
1 AAATGGATATA
23902253 AATGGAGAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.31
Consensus pattern (24 bp):
AAATGGATATATTTTGGAAAGATG
Found at i:23902355 original size:37 final size:36
Alignment explanation
Indices: 23902293--23902401 Score: 164
Period size: 37 Copynumber: 3.0 Consensus size: 36
23902283 TTATGTGTTA
*
23902293 ATTCAAAACTTATGTAATATCTTTAATTATGTAGTG
1 ATTCAAAACTTATGTAATATTTTTAATTATGTAGTG
23902329 ATTCAAAGACTTATGTAATATTTTTAATTATGTAGTG
1 ATTCAAA-ACTTATGTAATATTTTTAATTATGTAGTG
* * *
23902366 ATTAAAATATTTATGTAATGTTTTTAATTATGTAGT
1 ATTCAAA-ACTTATGTAATATTTTTAATTATGTAGT
23902402 TATTTAATTC
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
36 7 0.10
37 60 0.90
ACGTcount: A:0.36, C:0.05, G:0.12, T:0.48
Consensus pattern (36 bp):
ATTCAAAACTTATGTAATATTTTTAATTATGTAGTG
Found at i:23902361 original size:17 final size:17
Alignment explanation
Indices: 23902302--23902399 Score: 52
Period size: 17 Copynumber: 5.4 Consensus size: 17
23902292 AATTCAAAAC
*
23902302 TTATGTAATATCTTTAA
1 TTATGTAATATTTTTAA
* ***
23902319 TTATGTAGTGATTCAAAGA
1 TTATGTAAT-ATTTTTA-A
23902338 CTTATGTAATATTTTTAA
1 -TTATGTAATATTTTTAA
* ** *
23902356 TTATGTAGTGATTAAAATAT
1 TTATGTAAT-ATT--TTTAA
*
23902376 TTATGTAATGTTTTTAA
1 TTATGTAATATTTTTAA
23902393 TTATGTA
1 TTATGTA
23902400 GTTATTTAAT
Statistics
Matches: 57, Mismatches: 18, Indels: 12
0.66 0.21 0.14
Matches are distributed among these distances:
17 25 0.44
18 7 0.12
19 7 0.12
20 18 0.32
ACGTcount: A:0.35, C:0.03, G:0.12, T:0.50
Consensus pattern (17 bp):
TTATGTAATATTTTTAA
Found at i:23902420 original size:9 final size:9
Alignment explanation
Indices: 23902406--23902578 Score: 202
Period size: 9 Copynumber: 18.6 Consensus size: 9
23902396 TGTAGTTATT
23902406 TAATTCGGG
1 TAATTCGGG
23902415 TAATTCGGG
1 TAATTCGGG
*
23902424 TAATTTGGG
1 TAATTCGGG
23902433 TAATTTTCGGG
1 TAA--TTCGGG
23902444 TAATTCGGG
1 TAATTCGGG
*
23902453 TAATTTGGG
1 TAATTCGGG
23902462 TAATTTTCGGG
1 TAA--TTCGGG
*
23902473 TAATTTGGG
1 TAATTCGGG
23902482 TAATTTTCGGG
1 TAA--TTCGGG
23902493 TAATTCGGG
1 TAATTCGGG
23902502 TAATTCGGG
1 TAATTCGGG
*
23902511 TAATTCGAG
1 TAATTCGGG
* *
23902520 TAAGTCGAG
1 TAATTCGGG
23902529 TAATTCGGG
1 TAATTCGGG
* *
23902538 TAAGTCAGG
1 TAATTCGGG
23902547 TAATTCGGG
1 TAATTCGGG
*
23902556 TAAGTCGGG
1 TAATTCGGG
*
23902565 TAAGTCGGG
1 TAATTCGGG
23902574 TAATT
1 TAATT
23902579 TTTAACCAAA
Statistics
Matches: 142, Mismatches: 16, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
9 118 0.83
11 24 0.17
ACGTcount: A:0.24, C:0.09, G:0.32, T:0.36
Consensus pattern (9 bp):
TAATTCGGG
Found at i:23902446 original size:29 final size:27
Alignment explanation
Indices: 23902406--23902578 Score: 202
Period size: 29 Copynumber: 6.2 Consensus size: 27
23902396 TGTAGTTATT
*
23902406 TAATTCGGGTAATTCGGGTAATTTGGG
1 TAATTCGGGTAATTCGGGTAATTCGGG
*
23902433 TAATTTTCGGGTAATTCGGGTAATTTGGG
1 TAA--TTCGGGTAATTCGGGTAATTCGGG
*
23902462 TAATTTTCGGGTAATTTGGGTAATTTTCGGG
1 TAA--TTCGGGTAATTCGGGTAA--TTCGGG
*
23902493 TAATTCGGGTAATTCGGGTAATTCGAG
1 TAATTCGGGTAATTCGGGTAATTCGGG
* * * *
23902520 TAAGTCGAGTAATTCGGGTAAGTCAGG
1 TAATTCGGGTAATTCGGGTAATTCGGG
* *
23902547 TAATTCGGGTAAGTCGGGTAAGTCGGG
1 TAATTCGGGTAATTCGGGTAATTCGGG
23902574 TAATT
1 TAATT
23902579 TTTAACCAAA
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
27 58 0.45
29 63 0.49
31 8 0.06
ACGTcount: A:0.24, C:0.09, G:0.32, T:0.36
Consensus pattern (27 bp):
TAATTCGGGTAATTCGGGTAATTCGGG
Found at i:23902701 original size:28 final size:28
Alignment explanation
Indices: 23902641--23902701 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 28
23902631 TTATTAACCG
* *** *
23902641 AAAAAAATTTCGGTTCGGTTAATTTTTT
1 AAAAAAAATTCGGTTCGGTTAACGGTTA
*
23902669 TAAAAAAATTCGGTTCGGTTAACGGTTA
1 AAAAAAAATTCGGTTCGGTTAACGGTTA
23902697 AAAAA
1 AAAAA
23902702 TTTGGGAGGT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.39, C:0.08, G:0.16, T:0.36
Consensus pattern (28 bp):
AAAAAAAATTCGGTTCGGTTAACGGTTA
Found at i:23903341 original size:10 final size:11
Alignment explanation
Indices: 23903309--23903353 Score: 65
Period size: 11 Copynumber: 4.1 Consensus size: 11
23903299 ACCTTCTCCA
23903309 AGCTCAATTTT
1 AGCTCAATTTT
23903320 AGCTCAATTTT
1 AGCTCAATTTT
*
23903331 AGTTC-ATTTT
1 AGCTCAATTTT
23903341 AGCTCAAATTTT
1 AGCTC-AATTTT
23903353 A
1 A
23903354 TTTGCTGGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
10 9 0.30
11 15 0.50
12 6 0.20
ACGTcount: A:0.29, C:0.16, G:0.09, T:0.47
Consensus pattern (11 bp):
AGCTCAATTTT
Found at i:23910890 original size:56 final size:57
Alignment explanation
Indices: 23910751--23910890 Score: 176
Period size: 57 Copynumber: 2.5 Consensus size: 57
23910741 AGCATATACC
* * * * *
23910751 AATTTCACATAATTCATTCCTATATCAAATTCTATTATCAATCCATAAATTCATATC
1 AATTTCACATAATTCATTTCAATTTCAAATTCTATTATCAATCCATAAACTCATATA
*
23910808 AATTTCACATAATTCGTTTCAATTTCAAATTCTATTATCAAT-CATAAACTCATACTA
1 AATTTCACATAATTCATTTCAATTTCAAATTCTATTATCAATCCATAAACTCATA-TA
* * *
23910865 AATTT-ACGTATTTCATTTCAGTTTCA
1 AATTTCACATAATTCATTTCAATTTCA
23910891 TACTCCATTA
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
56 28 0.39
57 44 0.61
ACGTcount: A:0.36, C:0.19, G:0.02, T:0.42
Consensus pattern (57 bp):
AATTTCACATAATTCATTTCAATTTCAAATTCTATTATCAATCCATAAACTCATATA
Found at i:23913573 original size:5 final size:5
Alignment explanation
Indices: 23913563--23913608 Score: 55
Period size: 5 Copynumber: 9.8 Consensus size: 5
23913553 CAAATTAAAC
23913563 AAAGA AAAGA AAAGA AAAGA AAA-A GAAAG- AAAG- AAAG- AAAGA AAAG
1 AAAGA AAAGA AAAGA AAAGA AAAGA -AAAGA AAAGA AAAGA AAAGA AAAG
23913609 GAGAAGAAGC
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
4 13 0.34
5 25 0.66
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (5 bp):
AAAGA
Found at i:23913897 original size:25 final size:25
Alignment explanation
Indices: 23913849--23913897 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
23913839 CATAATTGAA
* * *
23913849 ATGAAATGGATTGATTTTGTATATT
1 ATGAAATAGATTGATTATGAATATT
*
23913874 ATGAAATATATTGATTATGAATAT
1 ATGAAATAGATTGATTATGAATAT
23913898 ATGTGTATTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (25 bp):
ATGAAATAGATTGATTATGAATATT
Found at i:23914402 original size:42 final size:43
Alignment explanation
Indices: 23914293--23914420 Score: 197
Period size: 43 Copynumber: 3.0 Consensus size: 43
23914283 TATGTGATTG
*
23914293 ATATTGAAATGACAAAGATGAGAAATGAA-TATGAGATGAGAAA
1 ATATTGAAATGACAAATATGAGAAAT-AATTATGAGATGAGAAA
* *
23914336 ATATTGAAATGACAATTACGAGAAATAATTATGAGATGAGAAA
1 ATATTGAAATGACAAATATGAGAAATAATTATGAGATGAGAAA
*
23914379 ATATTG-AATGACAAATATGAGAAATAATTTTGAGATGAGAAA
1 ATATTGAAATGACAAATATGAGAAATAATTATGAGATGAGAAA
23914421 TGAAATATGA
Statistics
Matches: 78, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
42 35 0.45
43 43 0.55
ACGTcount: A:0.52, C:0.03, G:0.20, T:0.25
Consensus pattern (43 bp):
ATATTGAAATGACAAATATGAGAAATAATTATGAGATGAGAAA
Found at i:23916145 original size:18 final size:19
Alignment explanation
Indices: 23916113--23916150 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
23916103 TTTTCTAAAA
23916113 TAAATATAATGAATTAATT
1 TAAATATAATGAATTAATT
*
23916132 TAAAT-TAATTAATTAATT
1 TAAATATAATGAATTAATT
23916150 T
1 T
23916151 CCCAATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (19 bp):
TAAATATAATGAATTAATT
Found at i:23921276 original size:29 final size:30
Alignment explanation
Indices: 23921234--23921292 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
23921224 GAATTGGATC
23921234 AAATCAAAATTTCATGTATAAAATTACACA
1 AAATCAAAATTTCATGTATAAAATTACACA
* * *
23921264 AAATTAAAA-TTCATGTATACAATTGCACA
1 AAATCAAAATTTCATGTATAAAATTACACA
23921293 TTAAACCATA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 18 0.69
30 8 0.31
ACGTcount: A:0.51, C:0.14, G:0.05, T:0.31
Consensus pattern (30 bp):
AAATCAAAATTTCATGTATAAAATTACACA
Found at i:23921751 original size:3 final size:3
Alignment explanation
Indices: 23921743--23921777 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
23921733 TTAATAACAG
23921743 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
23921778 TTATATCAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:23924452 original size:17 final size:17
Alignment explanation
Indices: 23924430--23924462 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
23924420 TTAACTTTCT
*
23924430 TTATTTCTTTATTTTTG
1 TTATTTATTTATTTTTG
23924447 TTATTTATTTATTTTT
1 TTATTTATTTATTTTT
23924463 AACCCTCTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.79
Consensus pattern (17 bp):
TTATTTATTTATTTTTG
Found at i:23929261 original size:68 final size:69
Alignment explanation
Indices: 23929128--23929262 Score: 200
Period size: 68 Copynumber: 2.0 Consensus size: 69
23929118 TGATTGAACT
* * * *
23929128 TAATCACTTTAATATTAAATTAATATAATATTTATCAAGATAAATATTAGATTAAATTTAATATT
1 TAATCACTTCAATATTAAATTAATAAAATATCTATCAAGATAAATATTAAATTAAATTTAATATT
23929193 AAGA
66 AAGA
* * *
23929197 TAATCACTTCAATATTAAATTAATAAAATA-CTATTAAGATAAGTATTAAATTTAATTTAATATT
1 TAATCACTTCAATATTAAATTAATAAAATATCTATCAAGATAAATATTAAATTAAATTTAATATT
23929261 AA
66 AA
23929263 ACTATTAAAA
Statistics
Matches: 59, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
68 31 0.53
69 28 0.47
ACGTcount: A:0.50, C:0.05, G:0.04, T:0.41
Consensus pattern (69 bp):
TAATCACTTCAATATTAAATTAATAAAATATCTATCAAGATAAATATTAAATTAAATTTAATATT
AAGA
Found at i:23932064 original size:49 final size:49
Alignment explanation
Indices: 23932007--23932104 Score: 162
Period size: 49 Copynumber: 2.0 Consensus size: 49
23931997 TTGTATAAGT
*
23932007 ATCATATTCATACTCTATTATCCATGA-TTTCTAAATTCCAGATTGCTTA
1 ATCATATTCATACTATATTATCCATGATTTTC-AAATTCCAGATTGCTTA
*
23932056 ATCATATTCATACTATATTATCCATGATTTTCAGATTCCAGATTGCTTA
1 ATCATATTCATACTATATTATCCATGATTTTCAAATTCCAGATTGCTTA
23932105 CTTTTTTTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
49 42 0.91
50 4 0.09
ACGTcount: A:0.31, C:0.19, G:0.07, T:0.43
Consensus pattern (49 bp):
ATCATATTCATACTATATTATCCATGATTTTCAAATTCCAGATTGCTTA
Found at i:23935086 original size:25 final size:25
Alignment explanation
Indices: 23935058--23935108 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
23935048 CTTACGTGTT
23935058 AGTACTCAACTTGATGATAACACTC
1 AGTACTCAACTTGATGATAACACTC
23935083 AGTACTCAACTTGATGATAACACTC
1 AGTACTCAACTTGATGATAACACTC
23935108 A
1 A
23935109 CACTCGTGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.27
Consensus pattern (25 bp):
AGTACTCAACTTGATGATAACACTC
Found at i:23936036 original size:17 final size:17
Alignment explanation
Indices: 23936010--23936051 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
23936000 TTCCCATGTG
23936010 ATGTAT-CTTCAAGTAC
1 ATGTATCCTTCAAGTAC
* *
23936026 ATGTATCCTTCGAGTTC
1 ATGTATCCTTCAAGTAC
*
23936043 ATGAATCCT
1 ATGTATCCT
23936052 CCCATGCAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 6 0.27
17 16 0.73
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.38
Consensus pattern (17 bp):
ATGTATCCTTCAAGTAC
Found at i:23940811 original size:47 final size:47
Alignment explanation
Indices: 23940745--23941259 Score: 899
Period size: 47 Copynumber: 11.0 Consensus size: 47
23940735 GAAATGATAG
*
23940745 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
23940792 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
23940839 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
23940886 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
23940933 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
23940980 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
23941027 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
23941074 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
23941121 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
23941167 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
23941214 TAAGGCCTAATGGCCGATGTG-TGACTGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
23941260 CAGGGCCGAG
Statistics
Matches: 457, Mismatches: 10, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
46 69 0.15
47 388 0.85
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:23941485 original size:37 final size:37
Alignment explanation
Indices: 23941429--23941507 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
23941419 CCGAGCTCTA
* * *
23941429 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
23941466 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
23941503 AAGAC
1 AAGAC
23941508 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:23943423 original size:29 final size:29
Alignment explanation
Indices: 23943388--23943461 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
23943378 CGTTGTGGAT
* *
23943388 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
23943417 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
23943446 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
23943462 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:23947310 original size:48 final size:47
Alignment explanation
Indices: 23947246--23947724 Score: 675
Period size: 48 Copynumber: 10.1 Consensus size: 47
23947236 TGAAAGATAG
*
23947246 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGT-GAAAGTGTATATGTGTGA
23947294 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATG-TGTGA
*
23947342 TAAGGCCTAATGGCCGATGTGATGAAATGTGAAA-TG-ATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATG-AATGTGAAAGTGTATATGTGTGA
* *
23947388 TAAGGCCAAATGGCCGGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCC-GATGTGATGAATGTGAAAGTGTATATGTGTGA
23947436 TAAGGCCTAA-ATGCCGATGTGATGGAATGTGAAAGTGTAT-TGTGTGA
1 TAAGGCCTAATA-GCCGATGTGAT-GAATGTGAAAGTGTATATGTGTGA
*
23947483 TAAGGCATAATAGTGTCCGATGTGATGAATGTGAAAGTGTAATAT-TGT-A
1 TAAGGCCTAATA--G-CCGATGTGATGAATGTGAAAGTGT-ATATGTGTGA
* *
23947532 TAAGGCCAAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
23947579 TAAGGCCTAATAGCCGATGGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGAT-GTGATGAATGTGAAAGTGTATATGTGTGA
* * *
23947627 TAAGGGCCTAATGGCCGATGTGATGACTGTGAAAGTGTATATATGTGA
1 TAA-GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
23947675 TAAGGCCTAATGGCCGATAGTGATGAATGTGAAAGTGTA-ATATGTGA
1 TAAGGCCTAATAGCCGAT-GTGATGAATGTGAAAGTGTATATGTGTGA
23947722 TAA
1 TAA
23947725 CCCAAGGCCG
Statistics
Matches: 402, Mismatches: 12, Indels: 35
0.90 0.03 0.08
Matches are distributed among these distances:
45 4 0.01
46 55 0.14
47 98 0.24
48 179 0.45
49 50 0.12
50 15 0.04
51 1 0.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:23947551 original size:143 final size:141
Alignment explanation
Indices: 23947246--23947724 Score: 711
Period size: 143 Copynumber: 3.4 Consensus size: 141
23947236 TGAAAGATAG
* *
23947246 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGA
1 TAAGGCCAAATGGCCGATGTGATGAATGT-GAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
23947311 TGTGATGAATGTGAAAGTGTATATGTTGTGATAAGGCCTAATGGCCGATGTGATGAAATGTGAAA
65 TGTGATGAATGTGAAAGTGTATATG-TGTGATAAGGCCTAATGGCCGATGTGATG-AATGTGAAA
*
23947376 -TG-ATATGTGTGA
128 GTGTATATATGTGA
*
23947388 TAAGGCCAAATGGCCGGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAA-ATGCCG
1 TAAGGCCAAATGGCC-GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA-GCCG
*
23947452 ATGTGATGGAATGTGAAAGTGTAT-TGTGTGATAAGGCATAATAGTGTCCGATGTGATGAATGTG
64 ATGTGAT-GAATGTGAAAGTGTATATGTGTGATAAGGCCTAAT-G-G-CCGATGTGATGAATGTG
23947516 AAAGTGTA-ATAT-TGTA
125 AAAGTGTATATATGTG-A
*
23947532 TAAGGCCAAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
* *
23947597 GGTGATGAATGTGAAAGTGTATATATGTGATAAGGGCCTAATGGCCGATGTGATGACTGTGAAAG
66 -GTGATGAATGTGAAAGTGTATATGTGTGATAA-GGCCTAATGGCCGATGTGATGAATGTGAAAG
23947662 TGTATATATGTGA
129 TGTATATATGTGA
*
23947675 TAAGGCCTAATGGCCGATAGTGATGAATGTGAAAGTGTA-ATATGTGATAA
1 TAAGGCCAAATGGCCGAT-GTGATGAATGTGAAAGTGTATATATGTGATAA
23947725 CCCAAGGCCG
Statistics
Matches: 311, Mismatches: 10, Indels: 31
0.88 0.03 0.09
Matches are distributed among these distances:
141 16 0.05
142 80 0.26
143 138 0.44
144 69 0.22
145 8 0.03
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (141 bp):
TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATGTGA
Found at i:23947967 original size:36 final size:37
Alignment explanation
Indices: 23947912--23947985 Score: 114
Period size: 36 Copynumber: 2.0 Consensus size: 37
23947902 CGAGCTCTGA
* *
23947912 AAGACCCGATGACTACGTGTGGGGATT-TGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
23947948 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
23947985 A
1 A
23947986 GACTTCATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
36 24 0.71
37 10 0.29
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:23953936 original size:47 final size:47
Alignment explanation
Indices: 23953871--23954469 Score: 839
Period size: 47 Copynumber: 13.0 Consensus size: 47
23953861 GAAATGATAG
23953871 TAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
23953917 TATAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT-TGTTGA
1 TA-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG-TGA
*
23953965 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
23954012 TAAGGCCAAAT-GCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
23954058 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
23954105 TAAGGCC-AATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
23954151 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA--TGTGA
*
23954200 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT-TGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
23954246 T-AGG-CTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG-A
23954292 TAAGGCCTAAATGGCCGATGTATGATGAATGTGAAAGTGATATATATGTGA
1 TAAGGCCT-AATGGCCGATG--TGATGAATGTGAAAGTG-TATATATGTGA
23954343 TAAGGCCTAATGGCCGATGT--TG-ATGTGAAAGTG--TATATGTG-
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
23954384 -AAGGACC--ATGGCCGATGTGATGGAA-GTGAAAGTGTA-A-ATGTGA
1 TAAGG-CCTAATGGCCGATGTGAT-GAATGTGAAAGTGTATATATGTGA
*
23954427 TAAGGCCTAATGGGCGATGTG-TG-AT-TGAAAGTGTATA-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
23954470 CAGGGCCGCA
Statistics
Matches: 516, Mismatches: 8, Indels: 61
0.88 0.01 0.10
Matches are distributed among these distances:
39 11 0.02
40 4 0.01
41 3 0.01
42 34 0.07
43 12 0.02
44 40 0.08
45 29 0.06
46 102 0.20
47 158 0.31
48 20 0.04
49 56 0.11
50 11 0.02
51 26 0.05
52 10 0.02
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:23954007 original size:23 final size:23
Alignment explanation
Indices: 23953981--23954054 Score: 64
Period size: 23 Copynumber: 3.2 Consensus size: 23
23953971 CTAATGGCCG
23953981 ATGTGATGAATGTGAAAGTGTAT
1 ATGTGATGAATGTGAAAGTGTAT
* ***
23954004 ATGTG-TGATAAG-GCCAAA-TGCCG
1 ATGTGATGA-ATGTG--AAAGTGTAT
23954027 ATGTGATGAATGTGAAAGTGTAT
1 ATGTGATGAATGTGAAAGTGTAT
23954050 ATGTG
1 ATGTG
23954055 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 12
0.65 0.14 0.21
Matches are distributed among these distances:
22 7 0.19
23 23 0.62
24 7 0.19
ACGTcount: A:0.32, C:0.05, G:0.31, T:0.31
Consensus pattern (23 bp):
ATGTGATGAATGTGAAAGTGTAT
Found at i:23954051 original size:93 final size:92
Alignment explanation
Indices: 23953871--23954468 Score: 834
Period size: 93 Copynumber: 6.5 Consensus size: 92
23953861 GAAATGATAG
*
23953871 TAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTGTATATATGTGATATAGGCCTAATAGCCGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATA-AGGCC-AATAGCCGA
23953935 TGTGATGAATGTGAAAGTGTATATTGTTGA
64 TGTGATGAATGTGAAAGTGTATATTG-TGA
23953965 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCAA-ATGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCAATA-GCCGAT
23954029 GTGATGAATGTGAAAGTGTATATGTGTGA
65 GTGATGAATGTGAAAGTGTATAT-TGTGA
23954058 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCAATAGCCGATG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCAATAGCCGATG
23954123 TGATGAATGTGAAAGTGTATATGTGTGA
66 TGATGAATGTGAAAGTGTATAT-TGTGA
*
23954151 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGTGATAAGGCCTAATAGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGTGATAAGGCC-AATAGCCG
23954216 ATGTGATGAATGTGAAAGTGTATATTGTGA
63 ATGTGATGAATGTGAAAGTGTATATTGTGA
* * *
23954246 T-AGG-CTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTG-ATAAGGCC--AATAGCCG
23954309 ATGTATGATGAATGTGAAAGTGATATATATGTGA
63 ATG--TGATGAATGTGAAAGTG-TATAT-TGTGA
*
23954343 TAAGGCCTAATGGCCGATGT--TG-ATGTGAAAGTGTATA--TGTG--AAGGACC-ATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGG-CCAATAGCCGAT
*
23954400 GTGATGGAA-GTGAAAGTGTA-AATGTGA
65 GTGAT-GAATGTGAAAGTGTATATTGTGA
*
23954427 TAAGGCCTAATGGGCGATGTG-TG-AT-TGAAAGTGTATAATGTG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-ATGTG
23954469 ACAGGGCCGC
Statistics
Matches: 475, Mismatches: 8, Indels: 49
0.89 0.02 0.09
Matches are distributed among these distances:
84 35 0.07
85 6 0.01
86 2 0.00
87 15 0.03
88 3 0.01
89 10 0.02
91 13 0.03
92 11 0.02
93 200 0.42
94 45 0.09
95 58 0.12
96 53 0.11
97 8 0.02
98 3 0.01
99 13 0.03
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (92 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCAATAGCCGATG
TGATGAATGTGAAAGTGTATATTGTGA
Found at i:23954167 original size:140 final size:139
Alignment explanation
Indices: 23953871--23954468 Score: 850
Period size: 140 Copynumber: 4.3 Consensus size: 139
23953861 GAAATGATAG
*
23953871 TAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTGTATATATGTGATATAGGCCTAATAGCCGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATA-AGGCCTAATAGCCGA
*
23953935 TGTGATGAATGTGAAAGTGTATATTGTTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
65 TGTGATGAATGTGAAAGTGTATATTG-TGATAAGGCC-AATAGCCGATGTGATGAATGTGAAAGT
*
23954000 GTATATGTGTGA
128 GTATATATGTGA
* *
23954012 TAAGGCCAAAT-GCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
23954076 GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCAATAGCCGATGTGATGAATGTGAAAGTGT
66 GTGATGAATGTGAAAGTGTATAT-TGTGATAAGGCCAATAGCCGATGTGATGAATGTGAAAGTGT
*
23954141 ATATGTGTGA
130 ATATATGTGA
*
23954151 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGTGATAAGGCCTAATAGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGTGATAAGGCCTAATAGCCG
*
23954216 ATGTGATGAATGTGAAAGTGTATATTGTGAT-AGGCTAATAGCCGATGTGATGAATGTGAAAGTG
64 ATGTGATGAATGTGAAAGTGTATATTGTGATAAGGCCAATAGCCGATGTGATGAATGTGAAAGTG
23954280 TATATATGTGAA
129 TATATATGTG-A
* *
23954292 TAAGGCCTAAATGGCCGATGTATGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGC
1 TAAGGCCT-AATGGCCGATG--TGATGAATGTGAAAGTG-TATATGTGTGATAAGGCCTAATAGC
*
23954357 CGATGT--TG-ATGTGAAAGTGTATA-TGTG--AAGGACC-ATGGCCGATGTGATGGAA-GTGAA
62 CGATGTGATGAATGTGAAAGTGTATATTGTGATAAGG-CCAATAGCCGATGTGAT-GAATGTGAA
23954414 AGTGTA-A-ATGTGA
125 AGTGTATATATGTGA
*
23954427 TAAGGCCTAATGGGCGATGTG-TG-AT-TGAAAGTGTATAATGTG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-ATGTG
23954469 ACAGGGCCGC
Statistics
Matches: 429, Mismatches: 15, Indels: 38
0.89 0.03 0.08
Matches are distributed among these distances:
128 3 0.01
129 12 0.03
130 2 0.00
131 2 0.00
132 2 0.00
134 10 0.02
135 9 0.02
136 5 0.01
137 1 0.00
138 27 0.06
139 56 0.13
140 146 0.34
141 46 0.11
142 61 0.14
143 30 0.07
144 17 0.04
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (139 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
GTGATGAATGTGAAAGTGTATATTGTGATAAGGCCAATAGCCGATGTGATGAATGTGAAAGTGTA
TATATGTGA
Found at i:23956743 original size:29 final size:29
Alignment explanation
Indices: 23956708--23956781 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
23956698 GTTGTGAGAT
* *
23956708 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
23956737 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
23956766 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
23956782 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:23957214 original size:40 final size:40
Alignment explanation
Indices: 23957091--23957247 Score: 140
Period size: 40 Copynumber: 3.9 Consensus size: 40
23957081 TCGAATGATG
* *
23957091 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCT-AGTGACTATA
* * * * *
23957131 TCCGGACTAAGAT-CCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCTAGTGACTATA
*
23957171 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-TATA
1 TCCGGGCTAAGTCCCGAAG-GCATTCGTGCTAGTGACTATA
* * * * *
23957211 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAG-GCATTCGTGCTAGTGAC
23957248 GTGTATTCGG
Statistics
Matches: 95, Mismatches: 17, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
39 1 0.01
40 74 0.78
41 20 0.21
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGACTATA
Found at i:23960704 original size:47 final size:47
Alignment explanation
Indices: 23960638--23961297 Score: 1099
Period size: 47 Copynumber: 14.1 Consensus size: 47
23960628 GAAATGATAG
23960638 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
23960685 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
23960732 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
23960779 TAAGGCC-AATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
23960825 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
23960872 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
23960919 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
23960966 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
23961013 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
23961060 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
23961107 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
23961154 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
23961201 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *** * * * * *
23961247 CAGGGCCGGGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
23961294 TAAG
1 TAAG
23961298 TCCGGAAGGG
Statistics
Matches: 592, Mismatches: 19, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
46 85 0.14
47 507 0.86
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:23961472 original size:37 final size:37
Alignment explanation
Indices: 23961416--23961494 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
23961406 CCGAGCTCTA
* * *
23961416 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
23961453 AAGACCCGATAACTTCGTGTGGAGATTATGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
23961490 AAGAC
1 AAGAC
23961495 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:23963391 original size:46 final size:45
Alignment explanation
Indices: 23963298--23963392 Score: 122
Period size: 46 Copynumber: 2.1 Consensus size: 45
23963288 AGATTAGTAA
* * *
23963298 CAGAAGCAATTTCAGTTCAGATTCAGAACAGATCAATTGCATATG
1 CAGAAGCAATTTCAGTTCACATACAGAACAGATCAATTGCAGATG
23963343 CAGAAGCAATTTCAGTTTCACATACAGAACA-AGTCAGATT-CAGATG
1 CAGAAGCAATTTCAG-TTCACATACAGAACAGA-TCA-ATTGCAGATG
23963389 CAGA
1 CAGA
23963393 TATTCCTAAC
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
45 16 0.36
46 25 0.57
47 3 0.07
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (45 bp):
CAGAAGCAATTTCAGTTCACATACAGAACAGATCAATTGCAGATG
Found at i:23963392 original size:22 final size:22
Alignment explanation
Indices: 23963309--23963392 Score: 57
Period size: 22 Copynumber: 3.8 Consensus size: 22
23963299 AGAAGCAATT
*
23963309 TCAG-TTCAGATTCAGAAC-AG
1 TCAGATTCAGATGCAGAACAAG
* *
23963329 ATCA-ATTGCATATGCAGAAGCAATT
1 -TCAGATT-CAGATGCAGAA-CAA-G
* * *
23963354 TCAGTTTCACATACAGAACAAG
1 TCAGATTCAGATGCAGAACAAG
23963376 TCAGATTCAGATGCAGA
1 TCAGATTCAGATGCAGA
23963393 TATTCCTAAC
Statistics
Matches: 47, Mismatches: 10, Indels: 11
0.69 0.15 0.16
Matches are distributed among these distances:
21 5 0.11
22 23 0.49
23 4 0.09
24 13 0.28
25 2 0.04
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (22 bp):
TCAGATTCAGATGCAGAACAAG
Found at i:23989906 original size:47 final size:47
Alignment explanation
Indices: 23989853--23989946 Score: 118
Period size: 47 Copynumber: 2.0 Consensus size: 47
23989843 AGTTTTACAG
* * *
23989853 TTCAAGATTGATCCCAT-TGTAATATTATGAAAATACAATTTAAGATT
1 TTCAAGATTCATCCCATCT-TAATATTATAAAAATACAATTCAAGATT
* * *
23989900 TTCAAGATTCATCTCATCTTAGTATTATAAAAATTCAATTCAAGATT
1 TTCAAGATTCATCCCATCTTAATATTATAAAAATACAATTCAAGATT
23989947 GATTTACGAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
47 39 0.98
48 1 0.03
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (47 bp):
TTCAAGATTCATCCCATCTTAATATTATAAAAATACAATTCAAGATT
Found at i:23992060 original size:24 final size:25
Alignment explanation
Indices: 23992032--23992086 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
23992022 TCGAAAATTG
23992032 TCCCGTTAT-TAGTCCTCT-CGAGCT
1 TCCCGTTATATAGTCCT-TACGAGCT
* *
23992056 TCCCGTTATATGGTTCTTACGAGCT
1 TCCCGTTATATAGTCCTTACGAGCT
23992081 TCCCGT
1 TCCCGT
23992087 CAATAGCTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 10 0.37
25 17 0.63
ACGTcount: A:0.13, C:0.31, G:0.18, T:0.38
Consensus pattern (25 bp):
TCCCGTTATATAGTCCTTACGAGCT
Found at i:23992193 original size:26 final size:26
Alignment explanation
Indices: 23992148--23992272 Score: 102
Period size: 26 Copynumber: 5.0 Consensus size: 26
23992138 GCACACCGCA
* *
23992148 GCTCTTT-TGAGCATCTCGATATATG
1 GCTCTTTGTGAGCTTCCCGATATATG
**
23992173 GCTCTTTGTGAGCTTCCCGAT-TAAAA
1 GCTCTTTGTGAGCTTCCCGATAT-ATG
*
23992199 GCTCTTTGTGAGCTTCCTGAT-TAATG
1 GCTCTTTGTGAGCTTCCCGATAT-ATG
*
23992225 GCTCTCTG-GAGCTTCCCG--ATATG
1 GCTCTTTGTGAGCTTCCCGATATATG
** *
23992248 GCTCGCT-TGAACTTCCCGATATATG
1 GCTCTTTGTGAGCTTCCCGATATATG
23992273 ACTATCCGGA
Statistics
Matches: 83, Mismatches: 11, Indels: 12
0.78 0.10 0.11
Matches are distributed among these distances:
23 18 0.22
24 1 0.01
25 22 0.27
26 42 0.51
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (26 bp):
GCTCTTTGTGAGCTTCCCGATATATG
Found at i:23992262 original size:23 final size:23
Alignment explanation
Indices: 23992222--23992269 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
23992212 TTCCTGATTA
* *
23992222 ATGGCTCTCTGGAGCTTCCCGAT
1 ATGGCTCGCTGGAACTTCCCGAT
*
23992245 ATGGCTCGCTTGAACTTCCCGAT
1 ATGGCTCGCTGGAACTTCCCGAT
23992268 AT
1 AT
23992270 ATGACTATCC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.17, C:0.29, G:0.23, T:0.31
Consensus pattern (23 bp):
ATGGCTCGCTGGAACTTCCCGAT
Found at i:23992295 original size:73 final size:73
Alignment explanation
Indices: 23992208--23992345 Score: 190
Period size: 73 Copynumber: 1.9 Consensus size: 73
23992198 AGCTCTTTGT
* * *
23992208 GAGCTTCCTGATTAATGGCTC-TCTGGAGCTTCCCGATA-TGGCTCGCTTGAACTTCCCGATATA
1 GAGCTTCCTAATTAATGGCTCTTC-GGAGCTACCCGATACTGGCTCGCATGAACTTCCCGA-ATA
23992271 TGACTATCCG
64 TGACTATCCG
* * *
23992281 GAGCTTCCTAATTAATGGCTCTTCGGAGCTACCCGTTACTGGCTCGCATGAGCTTCCTGAATATG
1 GAGCTTCCTAATTAATGGCTCTTCGGAGCTACCCGATACTGGCTCGCATGAACTTCCCGAATATG
23992346 GCTTTTATGA
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
73 37 0.65
74 20 0.35
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (73 bp):
GAGCTTCCTAATTAATGGCTCTTCGGAGCTACCCGATACTGGCTCGCATGAACTTCCCGAATATG
ACTATCCG
Found at i:23998187 original size:29 final size:29
Alignment explanation
Indices: 23997929--23998213 Score: 139
Period size: 29 Copynumber: 10.1 Consensus size: 29
23997919 TAAAATGTAA
* *
23997929 CCTTTGTGGCTATCT-T-TGA-AAGGATG
1 CCTTTGTGGCTATCTCTGTTATAAGAATG
* * *
23997955 CCTTTGTGGCTATCTCAGTTAAAAGTGA-G
1 CCTTTGTGGCTATCTCTGTTATAAG-AATG
* * *
23997984 CCTTTGTGGCTATTTCTATTA-AAAAAGTG
1 CCTTTGTGGCTATCTCTGTTATAAGAA-TG
* * * **
23998013 TCTTTGTAGC-AGT-T-T-TCATAAGAAAC
1 CCTTTGTGGCTA-TCTCTGTTATAAGAATG
** *
23998039 CCTCGGTGG-TGATCTCTGTTATAAGAAAG
1 CCTTTGTGGCT-ATCTCTGTTATAAGAATG
* * *
23998068 CCTTTATGG-TGATCTCTGTTATAAAAAAG
1 CCTTTGTGGCT-ATCTCTGTTATAAGAATG
* * * ** *
23998097 CATTTATGGCGATCTCTACTATAAAAATG
1 CCTTTGTGGCTATCTCTGTTATAAGAATG
* * *
23998126 TCTTTGT--CTATCTTTGTTATAAGGATG
1 CCTTTGTGGCTATCTCTGTTATAAGAATG
*
23998153 CCTTTGTGGCTATCTCTGTTATAAGGATG
1 CCTTTGTGGCTATCTCTGTTATAAGAATG
* *
23998182 CCTTTGTGGCTACCTCTATTA-AAGGAATG
1 CCTTTGTGGCTATCTCTGTTATAA-GAATG
23998211 CCT
1 CCT
23998214 GGTGACAAAC
Statistics
Matches: 200, Mismatches: 42, Indels: 31
0.73 0.15 0.11
Matches are distributed among these distances:
26 23 0.12
27 28 0.14
28 9 0.05
29 138 0.69
30 2 0.01
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.38
Consensus pattern (29 bp):
CCTTTGTGGCTATCTCTGTTATAAGAATG
Found at i:24004405 original size:18 final size:19
Alignment explanation
Indices: 24004366--24004409 Score: 56
Period size: 18 Copynumber: 2.3 Consensus size: 19
24004356 ATGAAAGAAA
24004366 TAAAATGTACATAATAAAAT
1 TAAAATGTA-ATAATAAAAT
24004386 TAAAATGT-ATAA-AAATAT
1 TAAAATGTAATAATAAA-AT
24004404 TAAAAT
1 TAAAAT
24004410 AAAACTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 3 0.13
18 12 0.52
20 8 0.35
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (19 bp):
TAAAATGTAATAATAAAAT
Found at i:24007091 original size:121 final size:121
Alignment explanation
Indices: 24006877--24007118 Score: 475
Period size: 121 Copynumber: 2.0 Consensus size: 121
24006867 AGAGCTCAAA
*
24006877 AATACTATTATTTGAACAAATAGGACAAAAGAAACTGTGTACTTGCCTCTAGATTGCCAGCTCGA
1 AATACTATTATTTGAACAAATAGGACAAAAGAAACTGTGTACTTGCCTCTAGATTGCCAGCTAGA
24006942 GTGGTTTGCATGATGAGGGGCCATTACCACTACCGTGACCAGGAATTCAGGGATGT
66 GTGGTTTGCATGATGAGGGGCCATTACCACTACCGTGACCAGGAATTCAGGGATGT
24006998 AATACTATTATTTGAACAAATAGGACAAAAGAAACTGTGTACTTGCCTCTAGATTGCCAGCTAGA
1 AATACTATTATTTGAACAAATAGGACAAAAGAAACTGTGTACTTGCCTCTAGATTGCCAGCTAGA
24007063 GTGGTTTGCATGATGAGGGGCCATTACCACTACCGTGACCAGGAATTCAGGGATGT
66 GTGGTTTGCATGATGAGGGGCCATTACCACTACCGTGACCAGGAATTCAGGGATGT
24007119 GTGAGCTTCT
Statistics
Matches: 120, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
121 120 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (121 bp):
AATACTATTATTTGAACAAATAGGACAAAAGAAACTGTGTACTTGCCTCTAGATTGCCAGCTAGA
GTGGTTTGCATGATGAGGGGCCATTACCACTACCGTGACCAGGAATTCAGGGATGT
Found at i:24014239 original size:21 final size:19
Alignment explanation
Indices: 24014215--24014254 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
24014205 TGAATGAATT
*
24014215 TGATAGGTTTTTGAAGTTTTA
1 TGATAGATTTTT-AA-TTTTA
24014236 TGATAGATTTTTAATTTTA
1 TGATAGATTTTTAATTTTA
24014255 ATTGTTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 2 0.11
21 11 0.61
ACGTcount: A:0.28, C:0.00, G:0.17, T:0.55
Consensus pattern (19 bp):
TGATAGATTTTTAATTTTA
Found at i:24027490 original size:40 final size:40
Alignment explanation
Indices: 24027446--24027531 Score: 111
Period size: 40 Copynumber: 2.1 Consensus size: 40
24027436 ATACTATTTG
* *
24027446 ATTCAGAGTTACC-AGAGTACAAACAGGGGCACGTATGTGC
1 ATTCAGAGGTACCGA-ACTACAAACAGGGGCACGTATGTGC
* * *
24027486 ATTCAGGGGTACCGAACTACAAATAGGGGCATGTATGTGC
1 ATTCAGAGGTACCGAACTACAAACAGGGGCACGTATGTGC
24027526 ATTCAG
1 ATTCAG
24027532 GGGCACATGT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 39 0.98
41 1 0.03
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.22
Consensus pattern (40 bp):
ATTCAGAGGTACCGAACTACAAACAGGGGCACGTATGTGC
Found at i:24027494 original size:20 final size:20
Alignment explanation
Indices: 24027469--24027551 Score: 62
Period size: 20 Copynumber: 4.2 Consensus size: 20
24027459 AGAGTACAAA
24027469 CAGGGGCACGTATGTGCATT
1 CAGGGGCACGTATGTGCATT
* ** * *
24027489 CAGGGGTACCG-AACTACAAAT
1 CAGGGGCA-CGTATGTGC-ATT
*
24027510 -AGGGGCATGTATGTGCATT
1 CAGGGGCACGTATGTGCATT
* *
24027529 CAGGGGCACATGTGTGCATT
1 CAGGGGCACGTATGTGCATT
24027549 CAG
1 CAG
24027552 CACTAATTAT
Statistics
Matches: 45, Mismatches: 14, Indels: 8
0.67 0.21 0.12
Matches are distributed among these distances:
19 3 0.07
20 38 0.84
21 4 0.09
ACGTcount: A:0.25, C:0.19, G:0.33, T:0.23
Consensus pattern (20 bp):
CAGGGGCACGTATGTGCATT
Found at i:24034152 original size:40 final size:40
Alignment explanation
Indices: 24034049--24034199 Score: 185
Period size: 40 Copynumber: 3.8 Consensus size: 40
24034039 AGAGTTTCCA
* * *
24034049 AAGTACAAATAGGGGCACGTATGGGCATTCAGAGGTACCA
1 AAGTACAAATAGGGGCACGTATGTGCATTCAGGGGTACCG
* * *
24034089 AAGTACAAACAGGGGGATGTATGTGCATTCAGGGGTACCG
1 AAGTACAAATAGGGGCACGTATGTGCATTCAGGGGTACCG
* * * * *
24034129 AAGTACAAATAGGGGCACGTATGTTCATTTATGGGCATCG
1 AAGTACAAATAGGGGCACGTATGTGCATTCAGGGGTACCG
* *
24034169 AAGTACAAATAGGGGCAGGCATGTGCATTCA
1 AAGTACAAATAGGGGCACGTATGTGCATTCA
24034200 ACAATAATTA
Statistics
Matches: 93, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 93 1.00
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.21
Consensus pattern (40 bp):
AAGTACAAATAGGGGCACGTATGTGCATTCAGGGGTACCG
Found at i:24034184 original size:20 final size:19
Alignment explanation
Indices: 24034127--24034185 Score: 55
Period size: 20 Copynumber: 3.0 Consensus size: 19
24034117 TCAGGGGTAC
24034127 CGAAGTACAAATAGGGGCA
1 CGAAGTACAAATAGGGGCA
* * ** *
24034146 CGTATGTTCATTTATGGGCA
1 CG-AAGTACAAATAGGGGCA
24034166 TCGAAGTACAAATAGGGGCA
1 -CGAAGTACAAATAGGGGCA
24034186 GGCATGTGCA
Statistics
Matches: 28, Mismatches: 10, Indels: 3
0.68 0.24 0.07
Matches are distributed among these distances:
19 2 0.07
20 24 0.86
21 2 0.07
ACGTcount: A:0.34, C:0.15, G:0.29, T:0.22
Consensus pattern (19 bp):
CGAAGTACAAATAGGGGCA
Found at i:24038106 original size:56 final size:54
Alignment explanation
Indices: 24038027--24038273 Score: 240
Period size: 56 Copynumber: 4.6 Consensus size: 54
24038017 AGGGATGAGA
*
24038027 TCCCATGTAAGACCATGTTTAGGACATGGCATTGGAATTATTGAGGTTATGAGAGG
1 TCCCATGTAAGACCATGTCTAGGACATGGCATTGG--TTATTGAGGTTATGAGAGG
* *
24038083 TCCCATGTAAGACCATGTCTAGGATATGACATTGGCGTTATTGAGGTTATGAGAGG
1 TCCCATGTAAGACCATGTCTAGGACATGGCATT-G-GTTATTGAGGTTATGAGAGG
* * * * **
24038139 TCTCATGTAAGACCATGTCTGGGACATGGCGTTGG-CACCGA-G--ATGAGAGG
1 TCCCATGTAAGACCATGTCTAGGACATGGCATTGGTTATTGAGGTTATGAGAGG
* ** ** **
24038189 TCCCCTGTAAGACCATGTCTAGGACATGGCA-TGGGCACCGA---TATGAGAAC
1 TCCCATGTAAGACCATGTCTAGGACATGGCATTGGTTATTGAGGTTATGAGAGG
* *
24038239 TCCCATGTAAGACCATGTCTGGGACATGGCTTTGG
1 TCCCATGTAAGACCATGTCTAGGACATGGCATTGG
24038274 CATGTTATTA
Statistics
Matches: 166, Mismatches: 20, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
49 3 0.02
50 75 0.45
51 3 0.02
52 1 0.01
53 3 0.02
54 1 0.01
55 1 0.01
56 77 0.46
57 1 0.01
58 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (54 bp):
TCCCATGTAAGACCATGTCTAGGACATGGCATTGGTTATTGAGGTTATGAGAGG
Found at i:24038185 original size:50 final size:50
Alignment explanation
Indices: 24038075--24038275 Score: 222
Period size: 50 Copynumber: 3.9 Consensus size: 50
24038065 TATTGAGGTT
* * * **
24038075 ATGAGAGGTCCCATGTAAGACCATGTCTAGGATATGACATTGGCGTTATTGAGG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGC---ACCGA-G
* *
24038129 TTATGAGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
1 --ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAG
* * * *
24038181 ATGAGAGGTCCCCTGTAAGACCATGTCTAGGACATGGCATGGGCACCGAT
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAG
** *
24038231 ATGAGAACTCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
24038276 TGTTATTATC
Statistics
Matches: 126, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
50 83 0.66
52 1 0.01
53 3 0.02
56 39 0.31
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAG
Found at i:24038205 original size:106 final size:100
Alignment explanation
Indices: 24038075--24038275 Score: 258
Period size: 100 Copynumber: 1.9 Consensus size: 100
24038065 TATTGAGGTT
* * ** **
24038075 ATGAGAGGTCCCATGTAAGACCATGTCTAGGATATGACATTGGCGTTATTGAGGTTATGAGAGGT
1 ATGAGAGGTCCCATGTAAGACCATGTCTAGGACATGACA-TGG-G-CACCGA---TATGAGAACT
*
24038140 CTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
60 CCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
* *
24038181 ATGAGAGGTCCCCTGTAAGACCATGTCTAGGACATGGCATGGGCACCGATATGAGAACTCCCATG
1 ATGAGAGGTCCCATGTAAGACCATGTCTAGGACATGACATGGGCACCGATATGAGAACTCCCATG
*
24038246 TAAGACCATGTCTGGGACATGGCTTTGGCA
66 TAAGACCATGTCTGGGACATGGCGTTGGCA
24038276 TGTTATTATC
Statistics
Matches: 85, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
100 42 0.49
103 3 0.04
104 1 0.01
105 3 0.04
106 36 0.42
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (100 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTAGGACATGACATGGGCACCGATATGAGAACTCCCATG
TAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
Found at i:24049014 original size:17 final size:17
Alignment explanation
Indices: 24048994--24049026 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
24048984 TTAGCCATGT
24048994 GAGTCACACAGCCTGGG
1 GAGTCACACAGCCTGGG
*
24049011 GAGTCACACGGCCTGG
1 GAGTCACACAGCCTGG
24049027 CCACATGGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.30, G:0.36, T:0.12
Consensus pattern (17 bp):
GAGTCACACAGCCTGGG
Found at i:24055301 original size:17 final size:17
Alignment explanation
Indices: 24055265--24055311 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
24055255 CATTGTCCCC
* *
24055265 AATGCAGTGAC-ATTAA
1 AATGCAATGACAATAAA
24055281 AATGCAATGACAATAAA
1 AATGCAATGACAATAAA
*
24055298 AATGCAACGACAAT
1 AATGCAATGACAAT
24055312 GTTCACTAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
16 10 0.37
17 17 0.63
ACGTcount: A:0.51, C:0.15, G:0.15, T:0.19
Consensus pattern (17 bp):
AATGCAATGACAATAAA
Found at i:24057620 original size:14 final size:15
Alignment explanation
Indices: 24057598--24057631 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
24057588 AGTAAAATAG
*
24057598 AATTACATAATAA-T
1 AATTTCATAATAATT
24057612 AATTTCATAATAATT
1 AATTTCATAATAATT
24057627 AATTT
1 AATTT
24057632 TTTTGACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTTCATAATAATT
Found at i:24068725 original size:25 final size:24
Alignment explanation
Indices: 24068683--24068737 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
24068673 AGCTAAATAA
* * *
24068683 CGGTAAGCTCATACGAGCTGACTAT
1 CGGTAAGCTCAGAAGAGCTGA-AAT
*
24068708 CGGTAAGCTTAGAAGAGCTGAAAT
1 CGGTAAGCTCAGAAGAGCTGAAAT
24068732 CGGTAA
1 CGGTAA
24068738 CCCTGATGAC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
24 8 0.31
25 18 0.69
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.22
Consensus pattern (24 bp):
CGGTAAGCTCAGAAGAGCTGAAAT
Found at i:24075840 original size:376 final size:375
Alignment explanation
Indices: 24075125--24075883 Score: 1482
Period size: 376 Copynumber: 2.0 Consensus size: 375
24075115 AACACTAAAC
*
24075125 ACACTTACTACAGATGTAGCCTGGGTTTAGGATTCAAGCCTCTCGCATCTCTATCTCTATTAGAA
1 ACACTAACTACAGATGTAGCCTGGGTTTAGGATTCAAGCCTCTCGCATCTCTATCTCTATTAGAA
*
24075190 TCTCCTACAGAAGTAGTAGAACGGTAGTGATGTTCTTTAGATTTTTTCGATGTTGACTGATATGA
66 TCTCCCACAGAAGTAGTAGAACGGTAGTGATGTTCTTTAGATTTTTTCGATGTTGACTGATATGA
*
24075255 CTTTCTCGTCAATCTCTTTCTCAAATCTTTAGCTTCAAATTCAGCGTGTCTTTTCTTTTTACTTA
131 CTTTCTCGTCAATCTCTTTCTCAAATCTTTAGCTTCAAATTCAGCGTGTCTTTTCTTTTTACTCA
24075320 GCTCTTCGGCTTTATGTGCTCGATCAACTAGTACAATAATTTCTTTCAACTCAAGGATCCCGACT
196 GCTCTTCGGCTTTATGTGCTCGATCAACTAGTACAATAATTTCTTTCAACTCAAGGATCCCGACT
24075385 AATAGCTTTATATCTTCATTTAATCCATCTTCAAATCGTTTACACATTGCAGTCTCAGTCAAAAT
261 AATAGCTTTATATCTTCATTTAATCCATCTTCAAATCGTTTACACATTGCAGTCTCAGTCAAAAT
24075450 GCACTCTTGAGCATATTTACTTAATCGAACAAATTCTCGTTCATATTCAG
326 GCACTCTTGAGCATATTTACTTAATCGAACAAATTCTCGTTCATATTCAG
24075500 ACACTAACTACAGATGTAGCCTGGGGTTTAGGATTCAAGCCTCTCGCATCTCTATCTCTATTAGA
1 ACACTAACTACAGATGTAGCCT-GGGTTTAGGATTCAAGCCTCTCGCATCTCTATCTCTATTAGA
24075565 ATCTCCCACAGAAGTAGTAGAACGGTAGTGATGTTCTTTAGATTTTTTCGATGTTGACTGATATG
65 ATCTCCCACAGAAGTAGTAGAACGGTAGTGATGTTCTTTAGATTTTTTCGATGTTGACTGATATG
24075630 ACTTTCTCGTCAATCTCTTTCTCAAATCTTTAGCTTCAAATTCAGCGTGTCTTTTCTTTTTACTC
130 ACTTTCTCGTCAATCTCTTTCTCAAATCTTTAGCTTCAAATTCAGCGTGTCTTTTCTTTTTACTC
24075695 AGCTCTTCGGCTTTATGTGCTCGATCAACTAGTACAATAATTTCTTTCAACTCAAGGATCCCGAC
195 AGCTCTTCGGCTTTATGTGCTCGATCAACTAGTACAATAATTTCTTTCAACTCAAGGATCCCGAC
24075760 TAATAGCTTTATATCTTCATTTAATCCATCTTCAAATCGTTTACACATTGCAGTCTCAGTCAAAA
260 TAATAGCTTTATATCTTCATTTAATCCATCTTCAAATCGTTTACACATTGCAGTCTCAGTCAAAA
24075825 TGCACTCTTGAGCATATTTACTTAATCGAACAAATTCTCGTTCATATTCAG
325 TGCACTCTTGAGCATATTTACTTAATCGAACAAATTCTCGTTCATATTCAG
24075876 ACACTAAC
1 ACACTAAC
24075884 ATACGACCCT
Statistics
Matches: 380, Mismatches: 3, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
375 21 0.06
376 359 0.94
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.37
Consensus pattern (375 bp):
ACACTAACTACAGATGTAGCCTGGGTTTAGGATTCAAGCCTCTCGCATCTCTATCTCTATTAGAA
TCTCCCACAGAAGTAGTAGAACGGTAGTGATGTTCTTTAGATTTTTTCGATGTTGACTGATATGA
CTTTCTCGTCAATCTCTTTCTCAAATCTTTAGCTTCAAATTCAGCGTGTCTTTTCTTTTTACTCA
GCTCTTCGGCTTTATGTGCTCGATCAACTAGTACAATAATTTCTTTCAACTCAAGGATCCCGACT
AATAGCTTTATATCTTCATTTAATCCATCTTCAAATCGTTTACACATTGCAGTCTCAGTCAAAAT
GCACTCTTGAGCATATTTACTTAATCGAACAAATTCTCGTTCATATTCAG
Found at i:24078197 original size:25 final size:24
Alignment explanation
Indices: 24078169--24078222 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
24078159 GTTGAATAAT
* * *
24078169 GGTAATCTCATACGAGCTGAGTATC
1 GGTAAGCTCATAAGAGCTGA-AATC
*
24078194 GGTAAGCTCATAAGAGTTGAAATC
1 GGTAAGCTCATAAGAGCTGAAATC
24078218 GGTAA
1 GGTAA
24078223 CCCTAATGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 8 0.32
25 17 0.68
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (24 bp):
GGTAAGCTCATAAGAGCTGAAATC
Found at i:24082014 original size:51 final size:51
Alignment explanation
Indices: 24081942--24082071 Score: 224
Period size: 51 Copynumber: 2.5 Consensus size: 51
24081932 ATAGGTCGCA
*
24081942 TGTGTAGTACTATGTGCAGGCTATTATGCATACCAGATAGCTTCGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTATGCATACCAGATAGCTTCGATCACG
**
24081993 TGTGTAGTACTATGTGCAGGCTACTATGCATACTGGATAGCTTCGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTATGCATACCAGATAGCTTCGATCACG
*
24082044 TGTGTAGTACCATGTGCAGGCTACTATG
1 TGTGTAGTACTATGTGCAGGCTACTATG
24082072 TGAACCGGTA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 75 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (51 bp):
TGTGTAGTACTATGTGCAGGCTACTATGCATACCAGATAGCTTCGATCACG
Found at i:24082131 original size:26 final size:26
Alignment explanation
Indices: 24082097--24082146 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
24082087 GAATATAAAG
24082097 GGGGTTGCTAAGTGCTGATTCCCCAA
1 GGGGTTGCTAAGTGCTGATTCCCCAA
*
24082123 GGGGTTGCTAAGTGTTGATTCCCC
1 GGGGTTGCTAAGTGCTGATTCCCC
24082147 GATTCATTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.16, C:0.22, G:0.32, T:0.30
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCAA
Found at i:24082162 original size:33 final size:33
Alignment explanation
Indices: 24082125--24082403 Score: 113
Period size: 33 Copynumber: 7.8 Consensus size: 33
24082115 TTCCCCAAGG
*
24082125 GGTTGCTAAGTGTTGATTCCCCGATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
** * *
24082158 GGTTGCTAAGTATTGATTCCACCGTATTTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCG-A--TT-CAT-T---GGT
*
24082200 GGTTGCTAAGTGCTGATTCCCC----CA-AGG-
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
* *
24082227 GGTTGCTAAGTGCTGATTCCTCTATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
* * *
24082260 GGTTTCTAAGTGCTGATTCCACCGTATTTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCG-A--TT-CAT-T---GGT
24082302 GGTTGCTAAGTGCTGATTCCACCG-TATCATTGAATGT
1 GGTTGCTAAGTGCTGATTCC-CCGAT-TCATTG---GT
* *
24082339 GAAAGGGGTTGCTAAGTGCTGATTCCCCGAATCACTGGT
1 ------GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
*
24082378 GGTTGCTAAGTGCTGAATCCACCGAT
1 GGTTGCTAAGTGCTGATTCC-CCGAT
24082404 AACGGATAAC
Statistics
Matches: 189, Mismatches: 21, Indels: 71
0.67 0.07 0.25
Matches are distributed among these distances:
27 21 0.11
28 2 0.01
31 2 0.01
32 2 0.01
33 58 0.31
34 9 0.05
35 2 0.01
37 6 0.03
38 7 0.04
39 5 0.03
41 2 0.01
42 53 0.28
43 20 0.11
ACGTcount: A:0.21, C:0.18, G:0.27, T:0.34
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
Found at i:24082269 original size:102 final size:102
Alignment explanation
Indices: 24082094--24082321 Score: 395
Period size: 102 Copynumber: 2.2 Consensus size: 102
24082084 TTTGAATATA
*
24082094 AAGGGGGTTGCTAAGTGCTGATT-CCCCAAGGGGTTGCTAAGTGTTGATTCCCCGATTCATTGGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
*
24082158 GGTTGCTAAGTATTGATTCCACCGTATTTTAAATGTG
66 GGTTGCTAAGTACTGATTCCACCGTATTTTAAATGTG
* *
24082195 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCTCTATTCATTGGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
* *
24082260 GGTTTCTAAGTGCTGATTCCACCGTATTTTAAATGTG
66 GGTTGCTAAGTACTGATTCCACCGTATTTTAAATGTG
24082297 AAGGGGGTTGCTAAGTGCTGATTCC
1 AAGGGGGTTGCTAAGTGCTGATTCC
24082322 ACCGTATCAT
Statistics
Matches: 120, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
101 23 0.19
102 97 0.81
ACGTcount: A:0.20, C:0.18, G:0.28, T:0.34
Consensus pattern (102 bp):
AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
GGTTGCTAAGTACTGATTCCACCGTATTTTAAATGTG
Found at i:24082352 original size:43 final size:43
Alignment explanation
Indices: 24082260--24082372 Score: 167
Period size: 42 Copynumber: 2.7 Consensus size: 43
24082250 ATTCATTGGT
* * *
24082260 GGTTTCTAAGTGCTGATTCCACCGTAT-TTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCCACCGTATCATTAAATGTGAAAGG
*
24082302 GGTTGCTAAGTGCTGATTCCACCGTATCATTGAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCCACCGTATCATTAAATGTGAAAGG
*
24082345 GGTTGCTAAGTGCTGATTCC-CCGAATCA
1 GGTTGCTAAGTGCTGATTCCACCGTATCA
24082373 CTGGTGGTTG
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
42 33 0.51
43 32 0.49
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.32
Consensus pattern (43 bp):
GGTTGCTAAGTGCTGATTCCACCGTATCATTAAATGTGAAAGG
Found at i:24086856 original size:49 final size:49
Alignment explanation
Indices: 24086796--24087035 Score: 166
Period size: 49 Copynumber: 4.7 Consensus size: 49
24086786 GATAATAACA
* *
24086796 TGCCAAAGCCATGTCCTAGACATGGTCTTACATGGGAGGTT-TCTTGTAC-
1 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGA-GTTCTCATGT-CG
* *
24086845 TGCCAATGCCATAT-CTCAGATATGGTCTTACATGGGAGTTCTCATGTCGG
1 TGCCAATGCCATGTCCT-AGACATGGTCTTACATGGGAGTTCTCATGTC-G
* * * ** * *
24086895 TGCCCATGCCATGTCCCAGACATGGTCTT--ATGGGGGACCCTCATCTTGG
1 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGAG-TTCTCAT-GTCG
* * * * *
24086944 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATG
1 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGA-GT-TC-TCATGTC---G
* *
24086999 ATGCCAATGCCATGTCCCATACATGGTCTTACATGGG
1 -TGCCAATGCCATGTCCTAGACATGGTCTTACATGGG
24087036 GTCTCTTTAC
Statistics
Matches: 151, Mismatches: 24, Indels: 25
0.75 0.12 0.12
Matches are distributed among these distances:
48 12 0.08
49 69 0.46
50 24 0.16
51 6 0.04
52 2 0.01
53 3 0.02
55 1 0.01
56 34 0.23
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (49 bp):
TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGAGTTCTCATGTCG
Found at i:24094212 original size:15 final size:15
Alignment explanation
Indices: 24094192--24094221 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
24094182 GTCTTTGCAT
24094192 ACCTTGAATAAATAC
1 ACCTTGAATAAATAC
24094207 ACCTTGAATAAATAC
1 ACCTTGAATAAATAC
24094222 GATTCGTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.20, G:0.07, T:0.27
Consensus pattern (15 bp):
ACCTTGAATAAATAC
Found at i:24095874 original size:39 final size:39
Alignment explanation
Indices: 24095820--24095897 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
24095810 TTCTTGAGTT
24095820 ATATCCAGTGTTGCAGAGACAATAACTGGGAGAATATTC
1 ATATCCAGTGTTGCAGAGACAATAACTGGGAGAATATTC
24095859 ATATCCAGTGTTGCAGAGACAATAACTGGGAGAATATTC
1 ATATCCAGTGTTGCAGAGACAATAACTGGGAGAATATTC
24095898 TTCTCACTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (39 bp):
ATATCCAGTGTTGCAGAGACAATAACTGGGAGAATATTC
Found at i:24098424 original size:24 final size:26
Alignment explanation
Indices: 24098378--24098426 Score: 75
Period size: 24 Copynumber: 1.9 Consensus size: 26
24098368 TTATATATAC
24098378 TAAATAATAAAATAATAAAATATTATT
1 TAAATAATAAAAT-ATAAAATATTATT
24098405 TAAA-AATAAAAT-TAAAATATTA
1 TAAATAATAAAATATAAAATATTA
24098427 ATAAACTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 10 0.45
26 8 0.36
27 4 0.18
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (26 bp):
TAAATAATAAAATATAAAATATTATT
Found at i:24106998 original size:15 final size:15
Alignment explanation
Indices: 24106975--24107010 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
24106965 TATGCCATTT
*
24106975 AAAGGCACCACAACC
1 AAAGACACCACAACC
*
24106990 AAAGACACCACAATC
1 AAAGACACCACAACC
24107005 AAAGAC
1 AAAGAC
24107011 CATTCATTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.53, C:0.33, G:0.11, T:0.03
Consensus pattern (15 bp):
AAAGACACCACAACC
Found at i:24108925 original size:27 final size:27
Alignment explanation
Indices: 24108869--24109067 Score: 181
Period size: 27 Copynumber: 7.4 Consensus size: 27
24108859 GGCTTGGGCT
* * *
24108869 GTAAAATGACCGTAATGCTCC-TATAGG
1 GTAAAATGATCGTAATGC-CCTTGTAAG
* * *
24108896 GTAATATGATCATAATACCCTTGTAAG
1 GTAAAATGATCGTAATGCCCTTGTAAG
* *
24108923 GTAAAATGATCGTAATGCCCTTCTAGG
1 GTAAAATGATCGTAATGCCCTTGTAAG
* * *
24108950 GTAAAAT-AACAGTAATGCCCCTGTACG
1 GTAAAATGATC-GTAATGCCCTTGTAAG
* * *
24108977 ATAAAACGA-CTGTAATGCCCTTGTAGG
1 GTAAAATGATC-GTAATGCCCTTGTAAG
*
24109004 GTAAAATGACCGTAATGCCCTTGTAAG
1 GTAAAATGATCGTAATGCCCTTGTAAG
* *
24109031 GTAAAATGATCGTAATGCCCCTAT-AG
1 GTAAAATGATCGTAATGCCCTTGTAAG
24109057 TGTAAAATGAT
1 -GTAAAATGAT
24109068 TATAATTCCC
Statistics
Matches: 141, Mismatches: 26, Indels: 10
0.80 0.15 0.06
Matches are distributed among these distances:
26 6 0.04
27 133 0.94
28 2 0.01
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.28
Consensus pattern (27 bp):
GTAAAATGATCGTAATGCCCTTGTAAG
Found at i:24108950 original size:54 final size:54
Alignment explanation
Indices: 24108869--24109073 Score: 227
Period size: 54 Copynumber: 3.8 Consensus size: 54
24108859 GGCTTGGGCT
* * *
24108869 GTAAAATGACCGTAATGCTCC-TATAGGGTAATATGATCATAATACCCTTGTAAG
1 GTAAAATGATCGTAATGC-CCTTATAGGGTAAAATGATCATAATGCCCTTGTAAG
* * * *
24108923 GTAAAATGATCGTAATGCCCTTCTAGGGTAAAAT-AACAGTAATGCCCCTGTACG
1 GTAAAATGATCGTAATGCCCTTATAGGGTAAAATGATCA-TAATGCCCTTGTAAG
* * * * *
24108977 ATAAAACGA-CTGTAATGCCCTTGTAGGGTAAAATGACCGTAATGCCCTTGTAAG
1 GTAAAATGATC-GTAATGCCCTTATAGGGTAAAATGATCATAATGCCCTTGTAAG
* * *
24109031 GTAAAATGATCGTAATGCCCCTATAGTGTAAAATGATTATAAT
1 GTAAAATGATCGTAATGCCCTTATAGGGTAAAATGATCATAAT
24109074 TCCCCATAGG
Statistics
Matches: 124, Mismatches: 22, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
53 6 0.05
54 115 0.93
55 3 0.02
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (54 bp):
GTAAAATGATCGTAATGCCCTTATAGGGTAAAATGATCATAATGCCCTTGTAAG
Found at i:24109089 original size:27 final size:27
Alignment explanation
Indices: 24108869--24109094 Score: 145
Period size: 27 Copynumber: 8.4 Consensus size: 27
24108859 GGCTTGGGCT
* * *
24108869 GTAAAATGACCGTAATGCTCCTATAGG
1 GTAAAATGATCATAATGCCCCTATAGG
* * * * *
24108896 GTAATATGATCATAATACCCTTGTAAG
1 GTAAAATGATCATAATGCCCCTATAGG
* * *
24108923 GTAAAATGATCGTAATGCCCTTCTAGG
1 GTAAAATGATCATAATGCCCCTATAGG
* * *
24108950 GTAAAAT-AACAGTAATGCCCCTGTACG
1 GTAAAATGATCA-TAATGCCCCTATAGG
* * * * *
24108977 ATAAAACGA-CTGTAATGCCCTTGTAGG
1 GTAAAATGATC-ATAATGCCCCTATAGG
* * * * *
24109004 GTAAAATGACCGTAATGCCCTTGTAAG
1 GTAAAATGATCATAATGCCCCTATAGG
* *
24109031 GTAAAATGATCGTAATGCCCCTATAGT
1 GTAAAATGATCATAATGCCCCTATAGG
* *
24109058 GTAAAATGATTATAATTCCCC-ATAGG
1 GTAAAATGATCATAATGCCCCTATAGG
24109084 GTTAAAA-GATC
1 G-TAAAATGATC
24109095 GAAGTACCCC
Statistics
Matches: 158, Mismatches: 36, Indels: 11
0.77 0.18 0.05
Matches are distributed among these distances:
26 10 0.06
27 146 0.92
28 2 0.01
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (27 bp):
GTAAAATGATCATAATGCCCCTATAGG
Found at i:24109090 original size:81 final size:80
Alignment explanation
Indices: 24108869--24109129 Score: 249
Period size: 81 Copynumber: 3.2 Consensus size: 80
24108859 GGCTTGGGCT
* * * *
24108869 GTAAAATGACCGTAATGCTCCTATAGGGTAATATGATCATAATACCCTTGTAAGGTAAAATGATC
1 GTAAAATGACCGTAATGCCCCTATA-GGTAAAATGATTATAATACCCTTGTAGGGTAAAATGATC
* *
24108934 GTAATGCCCTTCTAGG
65 GTAATGCCCTTGTAAG
* * * * * * * * *
24108950 GTAAAATAACAGTAATGCCCCTGTACGATAAAACGACTGTAATGCCCTTGTAGGGTAAAATGACC
1 GTAAAATGACCGTAATGCCCCTATA-GGTAAAATGATTATAATACCCTTGTAGGGTAAAATGATC
24109015 GTAATGCCCTTGTAAG
65 GTAATGCCCTTGTAAG
* * **
24109031 GTAAAATGATCGTAATGCCCCTATAGTGTAAAATGATTATAATTCCC-CATAGGGTTAAAA-GAT
1 GTAAAATGACCGTAATGCCCCTATAG-GTAAAATGATTATAATACCCTTGTAGGG-TAAAATGAT
* *
24109094 CG-AAGTACCCCTGTAAG
64 CGTAA-TGCCCTTGTAAG
* *
24109111 GTTAAATAACCGTAATGCC
1 GTAAAATGACCGTAATGCC
24109130 TCTAGAGGGT
Statistics
Matches: 144, Mismatches: 33, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
79 2 0.01
80 36 0.25
81 106 0.74
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (80 bp):
GTAAAATGACCGTAATGCCCCTATAGGTAAAATGATTATAATACCCTTGTAGGGTAAAATGATCG
TAATGCCCTTGTAAG
Found at i:24109222 original size:24 final size:24
Alignment explanation
Indices: 24109163--24109211 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
24109153 GCCCCTCGAG
* *
24109163 TGTAAATGATTGGTTTGTTTGTGA
1 TGTAAATGACTGGTTTGTCTGTGA
24109187 TGTAAATGACTGGTTTGTCTGTGA
1 TGTAAATGACTGGTTTGTCTGTGA
24109211 T
1 T
24109212 TTGTATGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.20, C:0.04, G:0.29, T:0.47
Consensus pattern (24 bp):
TGTAAATGACTGGTTTGTCTGTGA
Found at i:24109339 original size:27 final size:27
Alignment explanation
Indices: 24109296--24109348 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
24109286 AAGTACTGTA
24109296 CTGGTGGCTCTGCCACA-ATCACTGTTC
1 CTGGTGGCTCTGCCACATAT-ACTGTTC
*
24109323 CTGGTGGCT-TGGTCACATATACTGTT
1 CTGGTGGCTCT-GCCACATATACTGTT
24109349 ACCGGTAGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 1 0.04
27 20 0.87
28 2 0.09
ACGTcount: A:0.15, C:0.26, G:0.25, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATACTGTTC
Found at i:24109384 original size:26 final size:26
Alignment explanation
Indices: 24109341--24109394 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
24109331 TTGGTCACAT
*
24109341 ATACTGTTACCGGTAGCTTTGCTGCG
1 ATACTGTTACCGGCAGCTTTGCTGCG
* *
24109367 ATACTGTTGCTGGCAGCTTTGCTGCG
1 ATACTGTTACCGGCAGCTTTGCTGCG
24109393 AT
1 AT
24109395 GCTACTGATG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.15, C:0.22, G:0.28, T:0.35
Consensus pattern (26 bp):
ATACTGTTACCGGCAGCTTTGCTGCG
Found at i:24109406 original size:26 final size:26
Alignment explanation
Indices: 24109355--24109406 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
24109345 TGTTACCGGT
** *
24109355 AGCTTTGCTGCGATACTGTTGCTGGC
1 AGCTTTGCTGCGATACTACTGATGGC
*
24109381 AGCTTTGCTGCGATGCTACTGATGGC
1 AGCTTTGCTGCGATACTACTGATGGC
24109407 TGTGTACCGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.13, C:0.23, G:0.31, T:0.33
Consensus pattern (26 bp):
AGCTTTGCTGCGATACTACTGATGGC
Found at i:24109434 original size:32 final size:31
Alignment explanation
Indices: 24109396--24109500 Score: 104
Period size: 32 Copynumber: 3.3 Consensus size: 31
24109386 TGCTGCGATG
* *
24109396 CTACTGATGGCTGTGTACCGGTCATATCACT
1 CTACTGATGGCTGTGTGCCGATCATATCACT
* * **
24109427 ACTACTGATGGCTTTGTGCTGATCATAT-TGT
1 -CTACTGATGGCTGTGTGCCGATCATATCACT
*
24109458 CGTTACTGATGGCTGTGTGTCGATCATATCACT
1 C--TACTGATGGCTGTGTGCCGATCATATCACT
24109491 GCTACTGATG
1 -CTACTGATG
24109501 TCTTGTAGCC
Statistics
Matches: 58, Mismatches: 11, Indels: 8
0.75 0.14 0.10
Matches are distributed among these distances:
30 1 0.02
31 1 0.02
32 54 0.93
33 1 0.02
34 1 0.02
ACGTcount: A:0.19, C:0.21, G:0.24, T:0.36
Consensus pattern (31 bp):
CTACTGATGGCTGTGTGCCGATCATATCACT
Done.