Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 85 of 196
Found at i:24406383 original size:9 final size:9
Alignment explanation
Indices: 24406369--24406394 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
24406359 TTAAAACACA
24406369 AACTAAAAT
1 AACTAAAAT
24406378 AACTAAAAT
1 AACTAAAAT
24406387 AACTAAAA
1 AACTAAAA
24406395 ATTAATGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.69, C:0.12, G:0.00, T:0.19
Consensus pattern (9 bp):
AACTAAAAT
Found at i:24406384 original size:21 final size:23
Alignment explanation
Indices: 24406344--24406385 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
24406334 TAATGATGTG
*
24406344 CAAACTATAACATAATTAAAACA
1 CAAACTATAACATAACTAAAACA
24406367 CAAACTA-AA-ATAACTAAAA
1 CAAACTATAACATAACTAAAA
24406386 TAACTAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 2 0.11
23 7 0.39
ACGTcount: A:0.64, C:0.17, G:0.00, T:0.19
Consensus pattern (23 bp):
CAAACTATAACATAACTAAAACA
Found at i:24413788 original size:19 final size:19
Alignment explanation
Indices: 24413764--24413800 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
24413754 TTTGATGTTG
24413764 TGGTATG-ATAGTTTAAATA
1 TGGTATGTAT-GTTTAAATA
24413783 TGGTATGTATGTTTAAAT
1 TGGTATGTATGTTTAAAT
24413801 CCATGTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 15 0.88
20 2 0.12
ACGTcount: A:0.32, C:0.00, G:0.22, T:0.46
Consensus pattern (19 bp):
TGGTATGTATGTTTAAATA
Found at i:24416325 original size:3 final size:3
Alignment explanation
Indices: 24416252--24416310 Score: 93
Period size: 3 Copynumber: 20.0 Consensus size: 3
24416242 TTGATCAGCA
* *
24416252 CAT CAT CAT CAT CAT CAT CAT CAT AAT CAT CAT AAT CAT CAT CAT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
24416300 CAT CAT C-T CAT
1 CAT CAT CAT CAT
24416311 TTCATGATAT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
2 2 0.04
3 49 0.96
ACGTcount: A:0.36, C:0.31, G:0.00, T:0.34
Consensus pattern (3 bp):
CAT
Found at i:24427778 original size:43 final size:43
Alignment explanation
Indices: 24427717--24427804 Score: 167
Period size: 43 Copynumber: 2.0 Consensus size: 43
24427707 TCTAATGCCA
24427717 TTAACCTCTATAGTTTCACAATTCGGGCCTTGAATTGAAAAAT
1 TTAACCTCTATAGTTTCACAATTCGGGCCTTGAATTGAAAAAT
*
24427760 TTAACGTCTATAGTTTCACAATTCGGGCCTTGAATTGAAAAAT
1 TTAACCTCTATAGTTTCACAATTCGGGCCTTGAATTGAAAAAT
24427803 TT
1 TT
24427805 TTCTTCCAAC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (43 bp):
TTAACCTCTATAGTTTCACAATTCGGGCCTTGAATTGAAAAAT
Found at i:24431137 original size:19 final size:19
Alignment explanation
Indices: 24431109--24431149 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
24431099 AAAACAAAAT
* *
24431109 AAAAACTAAAACTGAAAGA
1 AAAAAATAAAAATGAAAGA
*
24431128 AAAAAATAAAAATGAAATA
1 AAAAAATAAAAATGAAAGA
24431147 AAA
1 AAA
24431150 TGTACTTGAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.76, C:0.05, G:0.07, T:0.12
Consensus pattern (19 bp):
AAAAAATAAAAATGAAAGA
Found at i:24431639 original size:11 final size:11
Alignment explanation
Indices: 24431623--24431663 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
24431613 TCTACAAATA
24431623 TTTAATCTATT
1 TTTAATCTATT
24431634 TTTAATCTATT
1 TTTAATCTATT
24431645 TTT--TCTA--
1 TTTAATCTATT
24431652 TTTAATCTATT
1 TTTAATCTATT
24431663 T
1 T
24431664 AATCTACAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
7 3 0.12
9 8 0.31
11 15 0.58
ACGTcount: A:0.24, C:0.10, G:0.00, T:0.66
Consensus pattern (11 bp):
TTTAATCTATT
Found at i:24431664 original size:9 final size:9
Alignment explanation
Indices: 24431621--24431669 Score: 62
Period size: 9 Copynumber: 5.2 Consensus size: 9
24431611 CTTCTACAAA
24431621 TATTTAATC
1 TATTTAATC
24431630 TATTTTTAATC
1 TA--TTTAATC
**
24431641 TATTTTTTC
1 TATTTAATC
24431650 TATTTAATC
1 TATTTAATC
24431659 TATTTAATC
1 TATTTAATC
24431668 TA
1 TA
24431670 CAAATATCCT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
9 25 0.74
11 9 0.26
ACGTcount: A:0.29, C:0.10, G:0.00, T:0.61
Consensus pattern (9 bp):
TATTTAATC
Found at i:24447089 original size:50 final size:50
Alignment explanation
Indices: 24447023--24447210 Score: 189
Period size: 50 Copynumber: 3.6 Consensus size: 50
24447013 TCTTGTACTA
* * **
24447023 CCAATGCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATAGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATATAGGTG
* * * *
24447073 CCCATGCCATGTCCCAGACATGGTCTTAC-TGGGGACCTCTCATCTCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACAT-GAGACCTCTCATATAGGTG
* * *
24447123 CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTAAATGATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCAT-A--T--A-GGTG
* *
24447179 CCAATGCCATGTCCCAAACATGGTTTTACATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATG
24447211 GGATCTCTTT
Statistics
Matches: 114, Mismatches: 16, Indels: 10
0.81 0.11 0.07
Matches are distributed among these distances:
49 1 0.01
50 79 0.69
51 1 0.01
53 1 0.01
56 32 0.28
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (50 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATATAGGTG
Found at i:24447182 original size:56 final size:50
Alignment explanation
Indices: 24446971--24447218 Score: 171
Period size: 50 Copynumber: 4.9 Consensus size: 50
24446961 TGAATATAAC
* * * * * *
24446971 ATGCCAAAGCTATGTCCCAGACATAGTCTTACATGGGA--TGT-TTCTTG
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
* * * * * ** * *
24447018 TACTACCAATGCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATAG
1 -A-TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
* * *
24447070 GTGCCCATGCCATGTCCCAGACATGGTCTTAC-TGGGGACCTCTCATCTCG
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACAT-GGGACCTCTCATCTCG
* *
24447120 GTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTAAATG
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCT---CG
* * * *
24447176 ATGCCAATGCCATGTCCCAAACATGGTTTTACATGGGATCTCT
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
24447219 TTACCCAAAT
Statistics
Matches: 159, Mismatches: 29, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
48 1 0.01
49 31 0.19
50 78 0.49
51 3 0.02
52 3 0.02
53 4 0.03
56 39 0.25
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.29
Consensus pattern (50 bp):
ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
Found at i:24448818 original size:17 final size:17
Alignment explanation
Indices: 24448788--24448842 Score: 65
Period size: 19 Copynumber: 3.1 Consensus size: 17
24448778 AGCAACTCAT
24448788 TTATTAATCTAAGATGAG
1 TTATTAA-CTAAGATGAG
*
24448806 TTATTAACTAAGATGAAC
1 TTATTAACTAAGATG-AG
*
24448824 TCAATTAACTAAGATGAG
1 T-TATTAACTAAGATGAG
24448842 T
1 T
24448843 AATTTATTCA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
17 8 0.25
18 11 0.34
19 13 0.41
ACGTcount: A:0.42, C:0.09, G:0.15, T:0.35
Consensus pattern (17 bp):
TTATTAACTAAGATGAG
Found at i:24450758 original size:18 final size:18
Alignment explanation
Indices: 24450731--24450774 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
24450721 ACTCTTATGT
*
24450731 TCTTTCTCAAATTCTGTC
1 TCTTTTTCAAATTCTGTC
* * *
24450749 TCTTTTTCAACTTCTTTT
1 TCTTTTTCAAATTCTGTC
24450767 TCTTTTTC
1 TCTTTTTC
24450775 TTTTTTGATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.11, C:0.25, G:0.02, T:0.61
Consensus pattern (18 bp):
TCTTTTTCAAATTCTGTC
Found at i:24453108 original size:61 final size:64
Alignment explanation
Indices: 24453038--24453171 Score: 152
Period size: 64 Copynumber: 2.1 Consensus size: 64
24453028 TTAACTTAAG
* * *
24453038 TAAATGAAC-TAAAACAT-ATGCATTAATTATTCC-AGCAACTAG-TTAATTAAAGAAGCAT-AA
1 TAAATGAACTTAAAACATCAT-CAATAAATAATCCTAGCAACTAGATTAATT-AAGAAGCATCAA
24453098 T
64 T
* * *
24453099 TAAATGAACTTAACACATGCATCAATAAATAATCCTAGGAACTAGATTAATTAAGAAGCATCTAT
1 TAAATGAACTTAAAACAT-CATCAATAAATAATCCTAGCAACTAGATTAATTAAGAAGCATCAAT
24453164 TAAATGAA
1 TAAATGAA
24453172 GTTCAATAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
61 9 0.15
62 7 0.11
63 10 0.16
64 19 0.31
65 16 0.26
ACGTcount: A:0.48, C:0.13, G:0.10, T:0.28
Consensus pattern (64 bp):
TAAATGAACTTAAAACATCATCAATAAATAATCCTAGCAACTAGATTAATTAAGAAGCATCAAT
Found at i:24453262 original size:17 final size:17
Alignment explanation
Indices: 24453232--24453286 Score: 65
Period size: 19 Copynumber: 3.1 Consensus size: 17
24453222 AGCAACTCAT
24453232 TTATTAATCTAAGATGAG
1 TTATTAA-CTAAGATGAG
*
24453250 TTATTAACTAAGATGAAC
1 TTATTAACTAAGATG-AG
*
24453268 TCAATTAACTAAGATGAG
1 T-TATTAACTAAGATGAG
24453286 T
1 T
24453287 ACTTTATTCA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
17 8 0.25
18 11 0.34
19 13 0.41
ACGTcount: A:0.42, C:0.09, G:0.15, T:0.35
Consensus pattern (17 bp):
TTATTAACTAAGATGAG
Found at i:24475444 original size:76 final size:76
Alignment explanation
Indices: 24475344--24475496 Score: 297
Period size: 76 Copynumber: 2.0 Consensus size: 76
24475334 ACAGTAGAAG
24475344 AAAGATTGAATAAAATAACATTTAACCCAGAAATCATGTATACTTCTTTACAAACATGAAATAGA
1 AAAGATTGAATAAAATAACATTTAACCCAGAAATCATGTATACTTCTTTACAAACATGAAATAGA
24475409 AAGTAATCACC
66 AAGTAATCACC
*
24475420 AAAGATTGAATAAAATAACATTTAACCTAGAAATCATGTATACTTCTTTACAAACATGAAATAGA
1 AAAGATTGAATAAAATAACATTTAACCCAGAAATCATGTATACTTCTTTACAAACATGAAATAGA
24475485 AAGTAATCACC
66 AAGTAATCACC
24475496 A
1 A
24475497 GCATTTAGAA
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 76 1.00
ACGTcount: A:0.49, C:0.15, G:0.09, T:0.27
Consensus pattern (76 bp):
AAAGATTGAATAAAATAACATTTAACCCAGAAATCATGTATACTTCTTTACAAACATGAAATAGA
AAGTAATCACC
Found at i:24493780 original size:25 final size:25
Alignment explanation
Indices: 24493712--24493774 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
24493702 TGGTAAATAT
24493712 TTTGTAAAGCCTTTATGGCAAACTC
1 TTTGTAAAGCCTTTATGGCAAACTC
* * * *
24493737 TCTATAAAGCCTTTGTGGCGAACTC
1 TTTGTAAAGCCTTTATGGCAAACTC
*
24493762 TTTGTAAAACCTT
1 TTTGTAAAGCCTT
24493775 CTTGGCATAT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.37
Consensus pattern (25 bp):
TTTGTAAAGCCTTTATGGCAAACTC
Found at i:24499010 original size:21 final size:21
Alignment explanation
Indices: 24498980--24499035 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
24498970 AACAGCGATG
*
24498980 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
* *
24499001 GCGTTGAGATTGGATACTGTA
1 GCGGTGAGATTAGATACTGTA
24499022 GCGGTGAGATTAGA
1 GCGGTGAGATTAGA
24499036 AACAATGGTG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.25, C:0.09, G:0.36, T:0.30
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:24504622 original size:18 final size:16
Alignment explanation
Indices: 24504599--24504634 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 16
24504589 ATAGGGTTTT
24504599 TAAAAGTATATTATAAAA
1 TAAAAGT-TATTA-AAAA
24504617 TAAAAGTTATTAAAAA
1 TAAAAGTTATTAAAAA
24504633 TA
1 TA
24504635 TTGGATTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
17 5 0.28
18 7 0.39
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (16 bp):
TAAAAGTTATTAAAAA
Found at i:24506457 original size:44 final size:44
Alignment explanation
Indices: 24506409--24506539 Score: 115
Period size: 43 Copynumber: 3.0 Consensus size: 44
24506399 CTTCGATCTG
*
24506409 CTCCACTACTTCTTAGGGAGATAAGTTCTGTAATTTTCAACCTA
1 CTCCACTACTTCTCAGGGAGATAAGTTCTGTAATTTTCAACCTA
* * * *** * * *
24506453 CTCCACTGCTGT-TCAGGGAGACAAG-GCTGGGGTCTTCAATCTG
1 CTCCACTACT-TCTCAGGGAGATAAGTTCTGTAATTTTCAACCTA
* *
24506496 CTCCAATACTGCTCAGGGAGATAAGATT-TGTAATTTTCAACCTA
1 CTCCACTACTTCTCAGGGAGATAAG-TTCTGTAATTTTCAACCTA
24506540 ATTCACTGCT
Statistics
Matches: 62, Mismatches: 21, Indels: 8
0.68 0.23 0.09
Matches are distributed among these distances:
43 31 0.50
44 30 0.48
45 1 0.02
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (44 bp):
CTCCACTACTTCTCAGGGAGATAAGTTCTGTAATTTTCAACCTA
Found at i:24506488 original size:87 final size:87
Alignment explanation
Indices: 24506397--24506555 Score: 248
Period size: 87 Copynumber: 1.8 Consensus size: 87
24506387 TAGGATTAGA
* * * * *
24506397 GTCTTCGATCTGCTCCACTACTTCTTAGGGAGATAAG-TTCTGTAATTTTCAACCTACTCCACTG
1 GTCTTCAATCTGCTCCAATACTGCTCAGGGAGATAAGATT-TGTAATTTTCAACCTAATCCACTG
24506461 CTGTTCAGGGAGACAAGGCTGGG
65 CTGTTCAGGGAGACAAGGCTGGG
*
24506484 GTCTTCAATCTGCTCCAATACTGCTCAGGGAGATAAGATTTGTAATTTTCAACCTAATTCACTGC
1 GTCTTCAATCTGCTCCAATACTGCTCAGGGAGATAAGATTTGTAATTTTCAACCTAATCCACTGC
24506549 TGTTCAG
66 TGTTCAG
24506556 AGAGCTAGGA
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
87 63 0.97
88 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (87 bp):
GTCTTCAATCTGCTCCAATACTGCTCAGGGAGATAAGATTTGTAATTTTCAACCTAATCCACTGC
TGTTCAGGGAGACAAGGCTGGG
Found at i:24506609 original size:44 final size:44
Alignment explanation
Indices: 24506577--24507009 Score: 688
Period size: 44 Copynumber: 9.8 Consensus size: 44
24506567 ATGCAATCTC
** * *
24506577 CCACCTATTCCACTGCTGGTCAGGGAGTTAGGACTTACAATCTT
1 CCACCTATTCCACTGCTGGTCAGGGAACTAGGGCTTACAGTCTT
** *
24506621 CCACCTATTCCACTGCAAGTAAGGGAACTAGGGCTTACAGTCTT
1 CCACCTATTCCACTGCTGGTCAGGGAACTAGGGCTTACAGTCTT
**
24506665 CCACCTATTCCACTATTGGTCAGGGAACTAGGGCTTACAGTCTT
1 CCACCTATTCCACTGCTGGTCAGGGAACTAGGGCTTACAGTCTT
* *
24506709 CCACCTATTCCAACTGCTGGTCAGAGAACTAGGACTTACAGTCTT
1 CCACCTATTCC-ACTGCTGGTCAGGGAACTAGGGCTTACAGTCTT
*
24506754 CCACCTATTCCGCTGCTGGTCAGGGAACTAGGGCTTACAGTCTT
1 CCACCTATTCCACTGCTGGTCAGGGAACTAGGGCTTACAGTCTT
*
24506798 CCACCTATTCCACTGCTGGTCAGGGAACTAAGGCTTACAGTCTT
1 CCACCTATTCCACTGCTGGTCAGGGAACTAGGGCTTACAGTCTT
*
24506842 CCACCTATTCCAACTGTTGGTCAGGGAACTAGGGCTTACAGTCTT
1 CCACCTATTCC-ACTGCTGGTCAGGGAACTAGGGCTTACAGTCTT
*
24506887 CCACCTATTCCACTGCTGGTCAAGGAACTAGGGCTTACAG-CTT
1 CCACCTATTCCACTGCTGGTCAGGGAACTAGGGCTTACAGTCTT
*
24506930 CCACCTATTCCACTGCTGGTCAAGGAACTAGGGCTTACAGTCTT
1 CCACCTATTCCACTGCTGGTCAGGGAACTAGGGCTTACAGTCTT
*
24506974 CTACCTATTCCACTGCTGGTCAGGGAACTAGGGCTT
1 CCACCTATTCCACTGCTGGTCAGGGAACTAGGGCTT
24507010 GTGATTTCAC
Statistics
Matches: 359, Mismatches: 27, Indels: 6
0.92 0.07 0.02
Matches are distributed among these distances:
43 43 0.12
44 234 0.65
45 82 0.23
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.27
Consensus pattern (44 bp):
CCACCTATTCCACTGCTGGTCAGGGAACTAGGGCTTACAGTCTT
Found at i:24506754 original size:133 final size:132
Alignment explanation
Indices: 24506577--24507005 Score: 682
Period size: 133 Copynumber: 3.2 Consensus size: 132
24506567 ATGCAATCTC
** * **
24506577 CCACCTATTCCACTGCTGGTCAGGGAGTTAGGACTTACAATCTTCCACCTATTCCACTGCAAGTA
1 CCACCTATTCCACTGCTGGTCAGGGAACTAGGACTTACAGTCTTCCACCTATTCCACTGCTGGTA
**
24506642 AGGGAACTAGGGCTTACAGTCTTCCACCTATTCCACTATTGGTCAGGGAACTAGGGCTTACAGTC
66 AGGGAACTAGGGCTTACAGTCTTCCACCTATTCCACTGCTGGTCAGGGAACTAGGGCTTACAGTC
24506707 TT
131 TT
* *
24506709 CCACCTATTCCAACTGCTGGTCAGAGAACTAGGACTTACAGTCTTCCACCTATTCCGCTGCTGGT
1 CCACCTATTCC-ACTGCTGGTCAGGGAACTAGGACTTACAGTCTTCCACCTATTCCACTGCTGGT
* *
24506774 CAGGGAACTAGGGCTTACAGTCTTCCACCTATTCCACTGCTGGTCAGGGAACTAAGGCTTACAGT
65 AAGGGAACTAGGGCTTACAGTCTTCCACCTATTCCACTGCTGGTCAGGGAACTAGGGCTTACAGT
24506839 CTT
130 CTT
* *
24506842 CCACCTATTCCAACTGTTGGTCAGGGAACTAGGGCTTACAGTCTTCCACCTATTCCACTGCTGGT
1 CCACCTATTCC-ACTGCTGGTCAGGGAACTAGGACTTACAGTCTTCCACCTATTCCACTGCTGGT
*
24506907 CAA-GGAACTAGGGCTTACAG-CTTCCACCTATTCCACTGCTGGTCAAGGAACTAGGGCTTACAG
65 -AAGGGAACTAGGGCTTACAGTCTTCCACCTATTCCACTGCTGGTCAGGGAACTAGGGCTTACAG
24506970 TCTT
129 TCTT
*
24506974 CTACCTATTCCACTGCTGGTCAGGGAACTAGG
1 CCACCTATTCCACTGCTGGTCAGGGAACTAGG
24507006 GCTTGTGATT
Statistics
Matches: 275, Mismatches: 20, Indels: 5
0.92 0.07 0.02
Matches are distributed among these distances:
131 20 0.07
132 66 0.24
133 188 0.68
134 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.27
Consensus pattern (132 bp):
CCACCTATTCCACTGCTGGTCAGGGAACTAGGACTTACAGTCTTCCACCTATTCCACTGCTGGTA
AGGGAACTAGGGCTTACAGTCTTCCACCTATTCCACTGCTGGTCAGGGAACTAGGGCTTACAGTC
TT
Found at i:24506774 original size:89 final size:88
Alignment explanation
Indices: 24506535--24507005 Score: 646
Period size: 89 Copynumber: 5.3 Consensus size: 88
24506525 GTAATTTTCA
* * * * *
24506535 ACCTAATT-CACTGCTGTTCAGAGAGCTAGGA-TATGCAATCTCCCACCTATTCCACTGCTGGTC
1 ACCT-ATTCCACTGCTGGTCAGAGAACTAGGACT-TACAGTCTTCCACCTATTCCACTGCTGGTC
** * *
24506598 AGGGAGTTAGGACTTACAATCTTCC
64 AGGGAACTAGGGCTTACAGTCTTCC
** * * * **
24506623 ACCTATTCCACTGCAAGTAAGGGAACTAGGGCTTACAGTCTTCCACCTATTCCACTATTGGTCAG
1 ACCTATTCCACTGCTGGTCAGAGAACTAGGACTTACAGTCTTCCACCTATTCCACTGCTGGTCAG
24506688 GGAACTAGGGCTTACAGTCTTCC
66 GGAACTAGGGCTTACAGTCTTCC
*
24506711 ACCTATTCCAACTGCTGGTCAGAGAACTAGGACTTACAGTCTTCCACCTATTCCGCTGCTGGTCA
1 ACCTATTCC-ACTGCTGGTCAGAGAACTAGGACTTACAGTCTTCCACCTATTCCACTGCTGGTCA
24506776 GGGAACTAGGGCTTACAGTCTTCC
65 GGGAACTAGGGCTTACAGTCTTCC
* *
24506800 ACCTATTCCACTGCTGGTCAGGGAACTAAGG-CTTACAGTCTTCCACCTATTCCAACTGTTGGTC
1 ACCTATTCCACTGCTGGTCAGAGAACT-AGGACTTACAGTCTTCCACCTATTCC-ACTGCTGGTC
24506864 AGGGAACTAGGGCTTACAGTCTTCC
64 AGGGAACTAGGGCTTACAGTCTTCC
*
24506889 ACCTATTCCACTGCTGGTCA-AGGAACTAGGGCTTACAG-CTTCCACCTATTCCACTGCTGGTCA
1 ACCTATTCCACTGCTGGTCAGA-GAACTAGGACTTACAGTCTTCCACCTATTCCACTGCTGGTCA
* *
24506952 AGGAACTAGGGCTTACAGTCTTCT
65 GGGAACTAGGGCTTACAGTCTTCC
*
24506976 ACCTATTCCACTGCTGGTCAGGGAACTAGG
1 ACCTATTCCACTGCTGGTCAGAGAACTAGG
24507006 GCTTGTGATT
Statistics
Matches: 343, Mismatches: 32, Indels: 17
0.88 0.08 0.04
Matches are distributed among these distances:
87 63 0.18
88 131 0.38
89 149 0.43
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (88 bp):
ACCTATTCCACTGCTGGTCAGAGAACTAGGACTTACAGTCTTCCACCTATTCCACTGCTGGTCAG
GGAACTAGGGCTTACAGTCTTCC
Found at i:24509269 original size:12 final size:12
Alignment explanation
Indices: 24509260--24509312 Score: 79
Period size: 12 Copynumber: 4.4 Consensus size: 12
24509250 CTTTTTTTAT
24509260 TTTTTATTTTGA
1 TTTTTATTTTGA
*
24509272 TTTTGATTTTGA
1 TTTTTATTTTGA
*
24509284 TTTTGATTTTGA
1 TTTTTATTTTGA
*
24509296 TTTTTATTTTTA
1 TTTTTATTTTGA
24509308 TTTTT
1 TTTTT
24509313 TTTGAATTGG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 38 1.00
ACGTcount: A:0.15, C:0.00, G:0.09, T:0.75
Consensus pattern (12 bp):
TTTTTATTTTGA
Found at i:24509275 original size:18 final size:18
Alignment explanation
Indices: 24509260--24509311 Score: 86
Period size: 18 Copynumber: 2.9 Consensus size: 18
24509250 CTTTTTTTAT
24509260 TTTTTATTTTGATTTTGA
1 TTTTTATTTTGATTTTGA
*
24509278 TTTTGATTTTGATTTTGA
1 TTTTTATTTTGATTTTGA
*
24509296 TTTTTATTTTTATTTT
1 TTTTTATTTTGATTTT
24509312 TTTTGAATTG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.15, C:0.00, G:0.10, T:0.75
Consensus pattern (18 bp):
TTTTTATTTTGATTTTGA
Found at i:24509306 original size:7 final size:6
Alignment explanation
Indices: 24509235--24509312 Score: 68
Period size: 6 Copynumber: 13.0 Consensus size: 6
24509225 TTTGACTTTG
* * * * * *
24509235 ATTTTT CTTTTT CTTCTT -TTTTT ATTTTTT ATTTTG ATTTTG ATTTTG
1 ATTTTT ATTTTT ATTTTT ATTTTT A-TTTTT ATTTTT ATTTTT ATTTTT
* *
24509283 ATTTTG ATTTTG ATTTTT ATTTTT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
24509313 TTTGAATTGG
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
5 4 0.06
6 55 0.85
7 6 0.09
ACGTcount: A:0.13, C:0.04, G:0.06, T:0.77
Consensus pattern (6 bp):
ATTTTT
Found at i:24514751 original size:18 final size:16
Alignment explanation
Indices: 24514728--24514763 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 16
24514718 ATAGGGTTTT
24514728 TAAAAGTATATTATAAAA
1 TAAAAGT-TATTA-AAAA
24514746 TAAAAGTTATTAAAAA
1 TAAAAGTTATTAAAAA
24514762 TA
1 TA
24514764 TTGGATTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
17 5 0.28
18 7 0.39
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (16 bp):
TAAAAGTTATTAAAAA
Found at i:24522010 original size:24 final size:25
Alignment explanation
Indices: 24521974--24522022 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
24521964 ATATACATGC
*
24521974 GCATATTTTATATATA-ATATATAT
1 GCATATTTAATATATATATATATAT
*
24521998 GCATATTTAATATATATATTTATAT
1 GCATATTTAATATATATATATATAT
24522023 ATATTAAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 15 0.68
25 7 0.32
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.51
Consensus pattern (25 bp):
GCATATTTAATATATATATATATAT
Found at i:24524161 original size:19 final size:19
Alignment explanation
Indices: 24524121--24524162 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
24524111 GTCTCTTTAG
* *
24524121 GCATTCATTTCATGCATTT
1 GCATTCATTACATGCATAT
24524140 GCATTACATTACAT-CATAT
1 GCATT-CATTACATGCATAT
24524159 GCAT
1 GCAT
24524163 AAACACCATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (19 bp):
GCATTCATTACATGCATAT
Found at i:24528310 original size:44 final size:44
Alignment explanation
Indices: 24528127--24529224 Score: 740
Period size: 45 Copynumber: 24.5 Consensus size: 44
24528117 TGAAAAGCAA
* * * ** *
24528127 CAGATCCTGTCTTCATATATTGGTAGCAAAGTGGATCGAAGATAG
1 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAG
* *** * * * *
24528172 TAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAA
1 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAG
* * * *
24528217 CAGATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATCAAATATAG
1 CAGATCTTGTCTTCATGTATTGGC-GTGAAGTAGATCGAAGATAG
* *
24528262 CAGATCTTGTATTCATGTATTGGCGTGAAGTAGATCGAAGATAA
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAG
** * *
24528306 CAGATCTTGTCTTTCCATGCTGGTGGC--GAAGTAGATCGAAGAAAA
1 CAGATCTTGTC-TT-CATG-TATTGGCGTGAAGTAGATCGAAGATAG
* * * * * *
24528351 CAGATCTTGTCTTCCTATACTGGCAGCGAAGTAGATCAAATATAG
1 CAGATCTTGTCTTCATGTATTGGC-GTGAAGTAGATCGAAGATAG
24528396 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAG
*** * * * * *
24528440 CAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAA
1 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAG
* * * * * *
24528485 CAAATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAATATAG
1 CAGATCTTGTCTTCATGTATTGGC-GTGAAGTAGATCGAAGATAG
*
24528530 CAGATCTTGTCTTCACGTATTGGCGTGAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAG
* * * * * * * *
24528574 TAGATCTTGTCTTTC-TATACTGGTGGCGAAGTAGAGCGAAGAAAA
1 CAGATCTTGTC-TTCATGTATTGG-CGTGAAGTAGATCGAAGATAG
* * * * *
24528619 CAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAATATAG
1 CAGATCTTGTCTTCATGTATTGGC-GTGAAGTAGATCGAAGATAG
* *** * * * * * *
24528664 TAGATC--AAATACAGTAGATCTTGTCTTCATGTATTGA-CATGAAATAGATAG
1 CAGATCTTGTCTTCA-T-G-TATTGGCGTGAAGTA--GATC--G--A-AGATAG
*** * * * *
24528715 CAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCAAAGATAA
1 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAG
** * *
24528760 TGGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAG
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA-AGATAG
* *
24528804 CAGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAG
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA-AGATAG
* *
24528848 CAGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAG
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA-AGATAG
* *
24528892 CAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAG
* * *** * * *
24528936 CAGATATTGGCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAA
1 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAG
** * *
24528981 TGGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAG
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAG
*** * * *
24529025 CAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAA
1 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAG
** ** * * * *
24529070 TGGATCTTGAGTTTATGTTTTGACATGAAGTAGATC-AGAGATAG
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA-AGATAG
*** * * *
24529114 CAGATCTTGTCTTCCCATACTGGTAGTGAAGTAGATCGAAGATAA
1 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAG
** * * * *
24529159 TGGGTCTTGTCTTCATGTATTGACATGAAGTAGATCAAAGATAG
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAG
*
24529203 CAGATCTTGTCTTCTTGTATTG
1 CAGATCTTGTCTTCATGTATTG
24529225 ACAGCGAAGA
Statistics
Matches: 816, Mismatches: 203, Indels: 69
0.75 0.19 0.06
Matches are distributed among these distances:
42 5 0.01
43 6 0.01
44 358 0.44
45 405 0.50
46 11 0.01
47 7 0.01
49 2 0.00
50 5 0.01
51 15 0.02
53 2 0.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (44 bp):
CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAG
Found at i:24528310 original size:89 final size:89
Alignment explanation
Indices: 24528155--24529241 Score: 790
Period size: 89 Copynumber: 12.1 Consensus size: 89
24528145 ATTGGTAGCA
* * * *** * * * *
24528155 AAGTGGATCGAAGATAGTAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAACAG
1 AAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAG
24528220 ATCTTGTCTTCCTGTACTGGCAGTG
65 ATCTTGTCTTCCTGTACTGGCAGTG
* * *
24528245 AAGTAGATCAAATATAGCAGATCTTGTATTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGA
1 AAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGA
** *
24528310 TCTTGTCTTTCCATG--CTGGTGGCG
66 TCTTGTC-TTCC-TGTACTGGCAGTG
* * * * * * * * *
24528334 AAGTAGATCGAAGAAAACAGATCTTGTCTTCCTATACTGGCAGCGAAGTAGATCAAATATAGCAG
1 AAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGC-GTGAAGTAGATCGAAGATAGCAG
* *
24528399 ATCTTGTCTTCATGTATTGGC-GTG
65 ATCTTGTCTTCCTGTACTGGCAGTG
* *** * * * * * *
24528423 AAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAA
1 AAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAG
*
24528488 ATCTTGTCTTCCTGTACTGGCAGCG
65 ATCTTGTCTTCCTGTACTGGCAGTG
* * *
24528513 AAGTAGATCAAATATAGCAGATCTTGTCTTCACGTATTGGCGTGAAGTAGATCGAAGATAGTAGA
1 AAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGA
* * ** *
24528578 TCTTGTCTTTCTATACTGGTGGCG
66 TCTTGTCTTCCTGTACTGGCAGTG
* * * * * * * * * *
24528602 AAGTAGAGCGAAGAAAACAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAATATAGTAG
1 AAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGC-GTGAAGTAGATCGAAGATAGCAG
* ** * *
24528667 ATCAAATACAGTAGATCTTGT-CT-TCA-TG
65 ATC---T--TGT-CTTCCTGTACTGGCAGTG
* * * * *** * * * *
24528695 TATTGACATGAAATAGATAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCAAAGATAA
1 AAGT-AGAT-CAA-AGATAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAG
** * * *
24528760 TGGATCTTGTCTTCATGTATTGACA-TG
62 CAGATCTTGTCTTCCTGTACTGGCAGTG
* * *
24528787 AAGTAGATCAGAGATAGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAGCAG
1 AAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA-AGATAGCAG
* * *
24528851 ATCTTGTCTTCATGTATTGACA-TG
65 ATCTTGTCTTCCTGTACTGGCAGTG
* * *
24528875 AAGTAGATCAGAGATAGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCAGA
1 AAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGA
* * ** **
24528940 TATTGGCTTCCCATACTGGTGGTG
66 TCTTGTCTTCCTGTACTGGCAGTG
* *** * *
24528964 AAGTAGATCGAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCAGA
1 AAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGA
** **
24529029 TCTTGTCTTCCCATACTGGTGGTG
66 TCTTGTCTTCCTGTACTGGCAGTG
* *** ** * * * *
24529053 AAGTAGATCGAAGATAATGGATCTTGAGTTTATGTTTTGACATGAAGTAGATC-AGAGATAGCAG
1 AAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA-AGATAGCAG
** *
24529117 ATCTTGTCTTCCCATACTGGTAGTG
65 ATCTTGTCTTCCTGTACTGGCAGTG
* *** * * * *
24529142 AAGTAGATCGAAGATAATGGGTCTTGTCTTCATGTATTGACATGAAGTAGATCAAAGATAGCAGA
1 AAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGA
* * * *
24529207 TCTTGTCTTCTTGTATTGACAGCG
66 TCTTGTCTTCCTGTACTGGCAGTG
*
24529231 AAGAAGATCAA
1 AAGTAGATCAA
24529242 GGCTACAAGT
Statistics
Matches: 823, Mismatches: 149, Indels: 51
0.80 0.15 0.05
Matches are distributed among these distances:
87 1 0.00
88 119 0.14
89 495 0.60
90 132 0.16
91 8 0.01
92 6 0.01
93 5 0.01
94 2 0.00
95 5 0.01
96 50 0.06
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (89 bp):
AAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGA
TCTTGTCTTCCTGTACTGGCAGTG
Found at i:24528400 original size:134 final size:134
Alignment explanation
Indices: 24528127--24529224 Score: 1055
Period size: 134 Copynumber: 8.2 Consensus size: 134
24528117 TGAAAAGCAA
* * * ** * *
24528127 CAGATCCTGTCTTCATATATTGGTAGCAAAGTGGATCGAAGATAGTAGATCTTGTCTTCCCATAC
1 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATAC
*
24528192 TGGTGGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATCAAA
65 TGGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATCAAA
*
24528257 TATAG
130 GATAG
* * * *
24528262 CAGATCTTGTATTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGATCTTGTCTTTCCATGCT
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACT
* * *
24528327 GGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCCTATACTGGCAGCGAAGTAGATCAAAT
66 GGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATCAAAG
24528392 ATAG
131 ATAG
24528396 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACT
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACT
* * *
24528461 GGTGGCGAAGTAGATCGAAGAAAACAAATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAT
66 GGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATCAAAG
24528526 ATAG
131 ATAG
* * * *
24528530 CAGATCTTGTCTTCACGTATTGGCGTGAAGTAGATCGAAGATAGTAGATCTTGTCTTTCTATACT
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACT
* *
24528595 GGTGGCGAAGTAGAGCGAAGAAAACAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAT
66 GGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATC----
24528660 ATAGTAGATCAAATACAG
127 A-A--AG-----AT--AG
* * *
24528678 TAGATCTTGTCTTCATGTATTGACATG-A--A-AT---AGATAGCAGATCTTGTCTTCCCATACT
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACT
* * * ** * * * *
24528736 GGTGGTGAAGTAGATCAAAGATAATGGATCTTGTCTTCATGTATTGACA-TGAAGTAGATCAGAG
66 GGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATCAAAG
24528800 ATAG
131 ATAG
* * *
24528804 CAGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAGCAGATCTTGTCTT--CAT-G
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA-AGATAGCAGATCTTGTCTTCCCATAC
** * * * * * *
24528865 TATTGACATGAAGTAGATC-AGAGATAGCAGATCTTGTCTTCATGTATTGACA-TGAAGTAGATC
65 TGGTGGC--GAAGTAGATCGA-AGAAAACAGATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATC
*
24528928 GAAGATAG
127 AAAGATAG
* * *** * * *** *
24528936 CAGATATTGGCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAATGGATCTTGTCTT--CAT-G
1 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATAC
** * * * ** ** *
24528998 TATTGACATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCG
65 TGGTGGC--GAAGTAGATCGAAGAAAACAGATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATCA
*
24529063 AAGATAA
128 AAGATAG
** ** * * * *
24529070 TGGATCTTGAGTTTATGTTTTGACATGAAGTAGATC-AGAGATAGCAGATCTTGTCTTCCCATAC
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA-AGATAGCAGATCTTGTCTTCCCATAC
* * * ** * * * *
24529134 TGGTAGTGAAGTAGATCGAAGATAATGGGTCTTGTCTTCATGTATTGACA-TGAAGTAGATCAAA
65 TGGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATCAAA
24529198 GATAG
130 GATAG
*
24529203 CAGATCTTGTCTTCTTGTATTG
1 CAGATCTTGTCTTCATGTATTG
24529225 ACAGCGAAGA
Statistics
Matches: 812, Mismatches: 119, Indels: 66
0.81 0.12 0.07
Matches are distributed among these distances:
126 28 0.03
127 1 0.00
128 2 0.00
129 1 0.00
130 5 0.01
131 4 0.00
132 72 0.09
133 154 0.19
134 411 0.51
135 23 0.03
136 3 0.00
138 1 0.00
139 1 0.00
140 10 0.01
141 65 0.08
144 2 0.00
145 1 0.00
146 2 0.00
147 1 0.00
148 25 0.03
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (134 bp):
CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACT
GGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATCAAAG
ATAG
Found at i:24528667 original size:14 final size:14
Alignment explanation
Indices: 24528648--24528683 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
24528638 CTGGCAGCGA
*
24528648 AGTAGATCAAATAT
1 AGTAGATCAAATAC
24528662 AGTAGATCAAATAC
1 AGTAGATCAAATAC
24528676 AGTAGATC
1 AGTAGATC
24528684 TTGTCTTCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.47, C:0.11, G:0.17, T:0.25
Consensus pattern (14 bp):
AGTAGATCAAATAC
Found at i:24529099 original size:133 final size:133
Alignment explanation
Indices: 24528741--24529227 Score: 391
Period size: 133 Copynumber: 3.7 Consensus size: 133
24528731 ATACTGGTGG
* *** ** * *
24528741 TGAAGTAGATCAAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATC-AGAGATAGC
1 TGAAGTAGATCAGAGATAGCAGATCTTGTCTTCACATATGGACATGAAGTAGATCGA-AGATAAC
* *
24528805 AGATCTTGTCTT-CATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCATGTATT
65 AGATATTGGCTTCCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCATGTATT
24528869 GACA
130 GACA
** * *
24528873 TGAAGTAGATCAGAGATAGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCA
1 TGAAGTAGATCAGAGATAGCAGATCTTGTCTTCACATATGGACATGAAGTAGATCGAAGATAACA
* *** ***
24528938 GATATTGGCTTCCCA--TACTGGTGGTGAAGTAGATC-GAAGATAATGGATCTTGTCTTCATGTA
66 GATATTGGCTT-CCATGTA-TTGACATGAAGTAGATCAG-AGATAGCAGATCTTGTCTTCATGTA
24529000 TTGACA
128 TTGACA
* ***
24529006 TGAAGTAGATC-GAAGATAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGATAA
1 TGAAGTAGATCAG-AGATAGCAGATCTTGTCTTCACATA-TGGACATGAAGTAGATCGAAGATAA
** * * * ***
24529070 TGGATCTTGAG-TT-TATGTTTTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCCCATA
64 CAGATATTG-GCTTCCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCATGTA
* **
24529133 CTGGTA
128 TTGACA
*** * ** * * *
24529139 GTGAAGTAGATC-GAAGATAATGGGTCTTGTCTTCATGTATTGACATGAAGTAGATCAAAGATAG
1 -TGAAGTAGATCAG-AGATAGCAGATCTTGTCTTCACATATGGACATGAAGTAGATCGAAGATAA
* * *
24529203 CAGATCTTGTCTT-CTTGTATTGACA
64 CAGATATTGGCTTCCATGTATTGACA
24529228 GCGAAGAAGA
Statistics
Matches: 284, Mismatches: 58, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
132 73 0.26
133 147 0.52
134 63 0.22
135 1 0.00
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.32
Consensus pattern (133 bp):
TGAAGTAGATCAGAGATAGCAGATCTTGTCTTCACATATGGACATGAAGTAGATCGAAGATAACA
GATATTGGCTTCCATGTATTGACATGAAGTAGATCAGAGATAGCAGATCTTGTCTTCATGTATTG
ACA
Found at i:24530463 original size:24 final size:25
Alignment explanation
Indices: 24530427--24530475 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
24530417 ATATAAATGC
*
24530427 GCATATTTTATATATA-ATATATAT
1 GCATATTTAATATATATATATATAT
*
24530451 GCATATTTAATATATATATTTATAT
1 GCATATTTAATATATATATATATAT
24530476 ATATTAAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 15 0.68
25 7 0.32
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.51
Consensus pattern (25 bp):
GCATATTTAATATATATATATATAT
Found at i:24530602 original size:34 final size:33
Alignment explanation
Indices: 24530558--24530640 Score: 103
Period size: 34 Copynumber: 2.5 Consensus size: 33
24530548 TTTAACTTTT
*
24530558 ATATATTTTATATTTTATAGATATATACATATAC
1 ATAT-TTTTATATTTTAAAGATATATACATATAC
* * * *
24530592 ATTTCTTTTATGTTGTAAATATATATACATATAC
1 ATAT-TTTTATATTTTAAAGATATATACATATAC
24530626 ATATTTTTATATTTT
1 ATATTTTTATATTTT
24530641 TATTTTACTT
Statistics
Matches: 40, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
33 9 0.22
34 31 0.77
ACGTcount: A:0.36, C:0.06, G:0.04, T:0.54
Consensus pattern (33 bp):
ATATTTTTATATTTTAAAGATATATACATATAC
Found at i:24541755 original size:44 final size:45
Alignment explanation
Indices: 24541701--24541789 Score: 144
Period size: 44 Copynumber: 2.0 Consensus size: 45
24541691 ATTTTGTTCC
* * *
24541701 ATGAATTTTCCAGCTGAAAACTAAGTTC-ATTTAGCTTATTAATT
1 ATGAAGTTTCCAGCTGAAAACTAAGTTCAATTCAGCTCATTAATT
24541745 ATGAAGTTTCCAGCTGAAAACTAAGTTCAATTCAGCTCATTAATT
1 ATGAAGTTTCCAGCTGAAAACTAAGTTCAATTCAGCTCATTAATT
24541790 TGTAATCATT
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 27 0.66
45 14 0.34
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (45 bp):
ATGAAGTTTCCAGCTGAAAACTAAGTTCAATTCAGCTCATTAATT
Found at i:24542677 original size:32 final size:34
Alignment explanation
Indices: 24542609--24542685 Score: 84
Period size: 34 Copynumber: 2.2 Consensus size: 34
24542599 TGGACTTTAT
* * *
24542609 TATATATAATATATATACGTGGTTTTCGGTGTTA
1 TATATATAATATATATACATGGTTCTCAGTGTTA
* *
24542643 TATATATAATATATATGCATGGTTCT-ATTGTATA
1 TATATATAATATATATACATGGTTCTCAGTGT-TA
24542677 TAGTATATA
1 TA-TATATA
24542686 TAATTATGGG
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
33 3 0.08
34 27 0.75
35 6 0.17
ACGTcount: A:0.34, C:0.05, G:0.14, T:0.47
Consensus pattern (34 bp):
TATATATAATATATATACATGGTTCTCAGTGTTA
Found at i:24544320 original size:202 final size:202
Alignment explanation
Indices: 24543974--24544378 Score: 810
Period size: 202 Copynumber: 2.0 Consensus size: 202
24543964 CACCTCAGTG
24543974 GCTAATGTGATATTTTGAATTCAGATATGGCTGTCCTAGTCGGGTTTGGGGCGTCACAACCTTCT
1 GCTAATGTGATATTTTGAATTCAGATATGGCTGTCCTAGTCGGGTTTGGGGCGTCACAACCTTCT
24544039 CAAGTACTATTTTATCCTACTTAAGGATATTATGTTTCATAACCAATGGTAAGACAACCAGTTGG
66 CAAGTACTATTTTATCCTACTTAAGGATATTATGTTTCATAACCAATGGTAAGACAACCAGTTGG
24544104 AATTTCAATTCAATTTTCAATAACACCACAGTCGGTAAATCAATTACCATGGTCTCAAGTTTTAA
131 AATTTCAATTCAATTTTCAATAACACCACAGTCGGTAAATCAATTACCATGGTCTCAAGTTTTAA
24544169 TTCTTTA
196 TTCTTTA
24544176 GCTAATGTGATATTTTGAATTCAGATATGGCTGTCCTAGTCGGGTTTGGGGCGTCACAACCTTCT
1 GCTAATGTGATATTTTGAATTCAGATATGGCTGTCCTAGTCGGGTTTGGGGCGTCACAACCTTCT
24544241 CAAGTACTATTTTATCCTACTTAAGGATATTATGTTTCATAACCAATGGTAAGACAACCAGTTGG
66 CAAGTACTATTTTATCCTACTTAAGGATATTATGTTTCATAACCAATGGTAAGACAACCAGTTGG
24544306 AATTTCAATTCAATTTTCAATAACACCACAGTCGGTAAATCAATTACCATGGTCTCAAGTTTTAA
131 AATTTCAATTCAATTTTCAATAACACCACAGTCGGTAAATCAATTACCATGGTCTCAAGTTTTAA
24544371 TTCTTTA
196 TTCTTTA
24544378 G
1 G
24544379 AATTGTCTTA
Statistics
Matches: 203, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
202 203 1.00
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.36
Consensus pattern (202 bp):
GCTAATGTGATATTTTGAATTCAGATATGGCTGTCCTAGTCGGGTTTGGGGCGTCACAACCTTCT
CAAGTACTATTTTATCCTACTTAAGGATATTATGTTTCATAACCAATGGTAAGACAACCAGTTGG
AATTTCAATTCAATTTTCAATAACACCACAGTCGGTAAATCAATTACCATGGTCTCAAGTTTTAA
TTCTTTA
Found at i:24545636 original size:18 final size:18
Alignment explanation
Indices: 24545613--24545651 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
24545603 ACCCAGCTTG
* *
24545613 GAAGATGATTGTTGAAAA
1 GAAGATGATTGCTAAAAA
24545631 GAAGATGATTGCTAAAAA
1 GAAGATGATTGCTAAAAA
24545649 GAA
1 GAA
24545652 TTAAGTTTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.49, C:0.03, G:0.26, T:0.23
Consensus pattern (18 bp):
GAAGATGATTGCTAAAAA
Found at i:24546556 original size:109 final size:109
Alignment explanation
Indices: 24546365--24546585 Score: 442
Period size: 109 Copynumber: 2.0 Consensus size: 109
24546355 TTTTATCATT
24546365 TGGGTGCTTAATTTAATAAAAAGGATTAAATCGCGTAAAGTGAAAAAGTTGTGTTCTATAAGCTA
1 TGGGTGCTTAATTTAATAAAAAGGATTAAATCGCGTAAAGTGAAAAAGTTGTGTTCTATAAGCTA
24546430 AAGGTGTCAAATAGTTATAAAACTTTAAAGTAAAGGTCCTTATG
66 AAGGTGTCAAATAGTTATAAAACTTTAAAGTAAAGGTCCTTATG
24546474 TGGGTGCTTAATTTAATAAAAAGGATTAAATCGCGTAAAGTGAAAAAGTTGTGTTCTATAAGCTA
1 TGGGTGCTTAATTTAATAAAAAGGATTAAATCGCGTAAAGTGAAAAAGTTGTGTTCTATAAGCTA
24546539 AAGGTGTCAAATAGTTATAAAACTTTAAAGTAAAGGTCCTTATG
66 AAGGTGTCAAATAGTTATAAAACTTTAAAGTAAAGGTCCTTATG
24546583 TGG
1 TGG
24546586 CAAATAGCCC
Statistics
Matches: 112, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
109 112 1.00
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.32
Consensus pattern (109 bp):
TGGGTGCTTAATTTAATAAAAAGGATTAAATCGCGTAAAGTGAAAAAGTTGTGTTCTATAAGCTA
AAGGTGTCAAATAGTTATAAAACTTTAAAGTAAAGGTCCTTATG
Found at i:24547643 original size:43 final size:43
Alignment explanation
Indices: 24547542--24547647 Score: 131
Period size: 43 Copynumber: 2.5 Consensus size: 43
24547532 TTACTGAGAG
* * *
24547542 GTGATAACATGTAAGACCATGTCTGGGACATTGGCATCGTTAT
1 GTGATAACATGTAAGACCATGTCTGGAACAGTGGCATCGATAT
* ** * * *
24547585 ATGATTTCATATAAGATCATGTTTGGAACAGTGGCATCGATAT
1 GTGATAACATGTAAGACCATGTCTGGAACAGTGGCATCGATAT
24547628 GTGATAACATGTAAGACCAT
1 GTGATAACATGTAAGACCAT
24547648 ATCTAGGATA
Statistics
Matches: 49, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.31
Consensus pattern (43 bp):
GTGATAACATGTAAGACCATGTCTGGAACAGTGGCATCGATAT
Found at i:24552405 original size:15 final size:15
Alignment explanation
Indices: 24552384--24552419 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
24552374 AGTGTTAATG
24552384 AAATCTACCAGTTGT
1 AAATCTACCAGTTGT
* *
24552399 GAATCTACTAGTTGT
1 AAATCTACCAGTTGT
24552414 AAATCT
1 AAATCT
24552420 TACGAATCTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (15 bp):
AAATCTACCAGTTGT
Found at i:24555347 original size:6 final size:6
Alignment explanation
Indices: 24555304--24555331 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
24555294 AGTTTTTTCA
24555304 AAAATG AAAATG AAAATG AAAATG AAAA
1 AAAATG AAAATG AAAATG AAAATG AAAA
24555332 ATGACCTGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (6 bp):
AAAATG
Found at i:24557014 original size:4 final size:4
Alignment explanation
Indices: 24557005--24557029 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
24556995 AAACTAAGTA
24557005 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
24557030 TAAAACTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:24559035 original size:98 final size:98
Alignment explanation
Indices: 24558866--24559058 Score: 332
Period size: 98 Copynumber: 2.0 Consensus size: 98
24558856 ACAATAAAAC
* * *
24558866 TTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATCCC
1 TTTAAAAGAACATCCACTCATCCAAGATTTAAGAAACCACACCCAATACATTAGGGCACAATCCC
24558931 TTTAGAATCCCAAACTCGGAATATTTCCTTTAT
66 TTTAGAATCCCAAACTCGGAATATTTCCTTTAT
* *
24558964 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAACCACACCCAATACATTAGGGCACAATTCC
1 TTTAAAAGAACATCCACTCATCCAAGATTTAAGAAACCACACCCAATACATTAGGGCACAATCCC
*
24559029 TTTAGAATCTCAAACTCGGAATATTTCCTT
66 TTTAGAATCCCAAACTCGGAATATTTCCTT
24559059 CATGATTTTT
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 89 1.00
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.28
Consensus pattern (98 bp):
TTTAAAAGAACATCCACTCATCCAAGATTTAAGAAACCACACCCAATACATTAGGGCACAATCCC
TTTAGAATCCCAAACTCGGAATATTTCCTTTAT
Found at i:24560068 original size:11 final size:11
Alignment explanation
Indices: 24560052--24560081 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
24560042 GTCCTTCGGC
24560052 CATCGGCCGGT
1 CATCGGCCGGT
*
24560063 CATCGGACGGT
1 CATCGGCCGGT
24560074 CATCGGCC
1 CATCGGCC
24560082 ACCGCGTCGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.13, C:0.37, G:0.33, T:0.17
Consensus pattern (11 bp):
CATCGGCCGGT
Found at i:24561001 original size:45 final size:46
Alignment explanation
Indices: 24560952--24561062 Score: 124
Period size: 45 Copynumber: 2.5 Consensus size: 46
24560942 TACTCCTCTA
*
24560952 CAACTTCAGGGA-GATAAGATTTGCCAT-CTTCAGTCTGC-CTCACTG
1 CAACTTCAGGGAGGATAAGACTTGCCATGCTT-AGTCTGCTC-CACTG
**
24560997 CAACTTCA-GGAGGATAAGACTTGCTTTGCTTAGTCTGCTCCACTG
1 CAACTTCAGGGAGGATAAGACTTGCCATGCTTAGTCTGCTCCACTG
* *
24561042 CAACCTCAGGG-GGATTAGACT
1 CAACTTCAGGGAGGATAAGACT
24561063 AGATGCGATC
Statistics
Matches: 57, Mismatches: 5, Indels: 8
0.81 0.07 0.11
Matches are distributed among these distances:
44 3 0.05
45 48 0.84
46 6 0.11
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.28
Consensus pattern (46 bp):
CAACTTCAGGGAGGATAAGACTTGCCATGCTTAGTCTGCTCCACTG
Found at i:24561104 original size:59 final size:59
Alignment explanation
Indices: 24561026--24561139 Score: 167
Period size: 59 Copynumber: 1.9 Consensus size: 59
24561016 CTTGCTTTGC
* * * *
24561026 TTAGTCTGCTCCACTGCAACCTCAGGGGGATTAGACTAGATGCGATCTGTTCTCTACAA
1 TTAGTCTGCTCCACCGCAACCTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAA
*
24561085 TTAGTCTTG-TCCACCGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCT
1 TTAGTC-TGCTCCACCGCAACCTCAGGGAGATAAGACTAGATGCGATCTGCTCTCT
24561140 GTAACTTCAG
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
59 47 0.96
60 2 0.04
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (59 bp):
TTAGTCTGCTCCACCGCAACCTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAA
Found at i:24561234 original size:44 final size:43
Alignment explanation
Indices: 24561129--24561249 Score: 120
Period size: 44 Copynumber: 2.8 Consensus size: 43
24561119 ACTAGATGCG
*
24561129 ATCTGCTCT-CTGTAACTTC-AGAGAGATAGGATCTGTAATTTTA
1 ATCTGCTCTACTGTAACTTCAAG-GAGATAGGAT-TGTAACTTTA
* * * **
24561172 ATCCGCTCAACTGCAACTTCAAGGAGATAGGATTGTCGGCTTTA
1 ATCTGCTCTACTGTAACTTCAAGGAGATAGGATTGT-AACTTTA
* * *
24561216 CTCTGCTCTACTGTAACTTCAGGGAGATAAGATT
1 ATCTGCTCTACTGTAACTTCAAGGAGATAGGATT
24561250 TGCCCTCTTC
Statistics
Matches: 63, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
43 10 0.16
44 51 0.81
45 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (43 bp):
ATCTGCTCTACTGTAACTTCAAGGAGATAGGATTGTAACTTTA
Found at i:24561339 original size:45 final size:45
Alignment explanation
Indices: 24561176--24561339 Score: 140
Period size: 45 Copynumber: 3.7 Consensus size: 45
24561166 ATTTTAATCC
* * * * *
24561176 GCTCAACTGCAACTTCAAGGAGATAGGA-TTG-TCGGCTTTACTCT
1 GCTCTACTGCAACTTCAGGGAGATAAGACTTGCTCTGC-TTAGTCT
* * *
24561220 GCTCTACTGTAACTTCAGGGAGATAAGATTTGCCCT-CTTCAGTCT
1 GCTCTACTGCAACTTCAGGGAGATAAGACTTGCTCTGCTT-AGTCT
* * * *
24561265 GC-CTTACTGCGACTTCA-GAAGAATGAGACTTGCTTTGCTTAGTCT
1 GCTC-TACTGCAACTTCAGGGAG-ATAAGACTTGCTCTGCTTAGTCT
*
24561310 GCTCCACTGCAACTTCAGGGAGATAAGACT
1 GCTCTACTGCAACTTCAGGGAGATAAGACT
24561340 AGATGCGATT
Statistics
Matches: 94, Mismatches: 18, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
44 30 0.32
45 56 0.60
46 8 0.09
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (45 bp):
GCTCTACTGCAACTTCAGGGAGATAAGACTTGCTCTGCTTAGTCT
Found at i:24561944 original size:29 final size:29
Alignment explanation
Indices: 24561902--24561959 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
24561892 CCAAATATGA
24561902 AAAAACAGTCTTAATTTGGACTTCTCCTT
1 AAAAACAGTCTTAATTTGGACTTCTCCTT
24561931 AAAAACAGTCTTAATTTGGACTTCTCCTT
1 AAAAACAGTCTTAATTTGGACTTCTCCTT
24561960 CTTAGGCTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (29 bp):
AAAAACAGTCTTAATTTGGACTTCTCCTT
Found at i:24573013 original size:98 final size:98
Alignment explanation
Indices: 24572844--24573036 Score: 350
Period size: 98 Copynumber: 2.0 Consensus size: 98
24572834 ACAATAAAAC
* *
24572844 TTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATCCC
1 TTTAAAAGAACATCCACTCATCCAAGATTTAAGAAACCACACCCAATACGTTAGGGCACAATCCC
24572909 TTTAGAATCTCAAACTCGGAATATTTCCTTTAT
66 TTTAGAATCTCAAACTCGGAATATTTCCTTTAT
* *
24572942 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAACCACACCCAATACGTTAGGGCACAATTCC
1 TTTAAAAGAACATCCACTCATCCAAGATTTAAGAAACCACACCCAATACGTTAGGGCACAATCCC
24573007 TTTAGAATCTCAAACTCGGAATATTTCCTT
66 TTTAGAATCTCAAACTCGGAATATTTCCTT
24573037 CATGATTTTT
Statistics
Matches: 91, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 91 1.00
ACGTcount: A:0.36, C:0.24, G:0.11, T:0.28
Consensus pattern (98 bp):
TTTAAAAGAACATCCACTCATCCAAGATTTAAGAAACCACACCCAATACGTTAGGGCACAATCCC
TTTAGAATCTCAAACTCGGAATATTTCCTTTAT
Found at i:24580986 original size:23 final size:23
Alignment explanation
Indices: 24580955--24581000 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
24580945 ATCATTAAAA
*
24580955 TTTTTTTATGATATTTT-TTATT
1 TTTTTTTATGAAATTTTCTTATT
24580977 TTTTTATTATGAAATTTTCTTATT
1 TTTTT-TTATGAAATTTTCTTATT
24581001 ATATGATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 5 0.24
23 11 0.52
24 5 0.24
ACGTcount: A:0.22, C:0.02, G:0.04, T:0.72
Consensus pattern (23 bp):
TTTTTTTATGAAATTTTCTTATT
Found at i:24584702 original size:18 final size:17
Alignment explanation
Indices: 24584674--24584708 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24584664 ATTATTAAGA
*
24584674 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
24584691 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
24584709 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:24584857 original size:157 final size:157
Alignment explanation
Indices: 24584662--24584978 Score: 598
Period size: 157 Copynumber: 2.0 Consensus size: 157
24584652 ATAAGAATAT
24584662 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
*
24584727 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
24584792 TAATAATTTACCAAAACAAATTTCTGC
131 TAATAATTTACCAAAACAAATTTATGC
24584819 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
*
24584884 AAATATGATTATATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
24584949 TAATCATTTACCAAAACAAATTTATGC
131 TAATAATTTACCAAAACAAATTTATGC
24584976 TAA
1 TAA
24584979 GGGTATTCTA
Statistics
Matches: 156, Mismatches: 4, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
157 156 1.00
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.44
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTATGC
Found at i:24584859 original size:18 final size:17
Alignment explanation
Indices: 24584831--24584865 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24584821 ATTATTAAGA
*
24584831 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
24584848 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
24584866 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:24585110 original size:45 final size:44
Alignment explanation
Indices: 24585011--24585120 Score: 131
Period size: 45 Copynumber: 2.6 Consensus size: 44
24585001 TTTTCCATTA
24585011 TGCTATTACACCTCTATT-C--T--ATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
* * ***
24585050 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGA-T
24585095 TGCTATTACACCTCTATTCCATTACA
1 TGCTATTACACCTCTATTCCATTACA
24585121 CCTCTAATCC
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
42 1 0.02
44 15 0.26
45 25 0.43
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
Found at i:24585120 original size:16 final size:16
Alignment explanation
Indices: 24585099--24585136 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
24585089 TTGATTTGCT
*
24585099 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
24585115 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
24585131 AATACA
1 ATTACA
24585137 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.32
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:24588478 original size:26 final size:29
Alignment explanation
Indices: 24588420--24588486 Score: 125
Period size: 29 Copynumber: 2.3 Consensus size: 29
24588410 AATGTTTAGG
24588420 TTCTTCTTTCTAACCTCAACATTTTCTTC
1 TTCTTCTTTCTAACCTCAACATTTTCTTC
*
24588449 TTCTTCTTTCTAACCTCAACATTTTTTTC
1 TTCTTCTTTCTAACCTCAACATTTTCTTC
24588478 TTCTTCTTT
1 TTCTTCTTT
24588487 GTTAAGATCG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.15, C:0.28, G:0.00, T:0.57
Consensus pattern (29 bp):
TTCTTCTTTCTAACCTCAACATTTTCTTC
Found at i:24590317 original size:4 final size:4
Alignment explanation
Indices: 24590308--24590369 Score: 115
Period size: 4 Copynumber: 15.5 Consensus size: 4
24590298 GACACTAAGG
24590308 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
24590356 ACAT GCAT ACAT AC
1 ACAT ACAT ACAT AC
24590370 CCCAAATTCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
4 56 1.00
ACGTcount: A:0.48, C:0.26, G:0.02, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:24602758 original size:10 final size:11
Alignment explanation
Indices: 24602743--24602768 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
24602733 TTTCAACTTC
24602743 TTTTTTTCTAT
1 TTTTTTTCTAT
24602754 TTTTTTTCTAT
1 TTTTTTTCTAT
24602765 TTTT
1 TTTT
24602769 AATTGCAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTTTCTAT
Found at i:24607512 original size:84 final size:85
Alignment explanation
Indices: 24607351--24607596 Score: 352
Period size: 84 Copynumber: 2.9 Consensus size: 85
24607341 CAAACAAAAA
* * * *
24607351 CGCCACTAAAGACCATGTTCTTTAGCGGCGTTTTTGTT-TGTGCGCCTCTAAAGAACATGTTCTT
1 CGCCACTAAAGAACATGTTCTTTAGCGGCGTTTTTTTTCTATGCGCCGCTAAAGAACATGTTCTT
24607415 TAGCGGCGTTTTTTTCTAAG
66 TAGCGGCGTTTTTTTCTAAG
* * * *
24607435 CGCCTCTAAAGAGCATGTTCTTTAGCGGCATTTTTTTTCTATGCGCCGCTAAAGAACATGGTCTT
1 CGCCACTAAAGAACATGTTCTTTAGCGGCGTTTTTTTTCTATGCGCCGCTAAAGAACATGTTCTT
*
24607500 TAGCGGTG-TTTTTTCTAAG
66 TAGCGGCGTTTTTTTCTAAG
* * * *
24607519 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTCTTTTTTCTAAGCGCCGCTAAAGAACATGTTCTT
1 CGCCACTAAAGAACATGTTCTTTAGCGGCGTTTTTTTTCTATGCGCCGCTAAAGAACATGTTCTT
*
24607584 TAGCGGCGCTTTT
66 TAGCGGCGTTTTT
24607597 ATACAAAAAC
Statistics
Matches: 144, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
84 110 0.76
85 34 0.24
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (85 bp):
CGCCACTAAAGAACATGTTCTTTAGCGGCGTTTTTTTTCTATGCGCCGCTAAAGAACATGTTCTT
TAGCGGCGTTTTTTTCTAAG
Found at i:24607591 original size:43 final size:42
Alignment explanation
Indices: 24607351--24607596 Score: 334
Period size: 43 Copynumber: 5.8 Consensus size: 42
24607341 CAAACAAAAA
* * **
24607351 CGCCACTAAAGACCATGTTCTTTAGCGGCGTTTTTGTT-TGTG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTT-TTCTAAG
*
24607393 CGCCTCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
* * * *
24607435 CGCCTCTAAAGAGCATGTTCTTTAGCGGCATTTTTTTTCTATG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGC-GTTTTTTTCTAAG
* *
24607478 CGCCGCTAAAGAACATGGTCTTTAGCGGTG-TTTTTTCTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
*
24607519 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTCTTTTTTCTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGT-TTTTTTCTAAG
*
24607562 CGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTTT
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTT
24607597 ATACAAAAAC
Statistics
Matches: 184, Mismatches: 16, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
41 41 0.22
42 67 0.36
43 76 0.41
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
Found at i:24607949 original size:21 final size:21
Alignment explanation
Indices: 24607919--24607972 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
24607909 ACTCTGCTCT
* * *
24607919 GCTTCTCTCGTTGCAGCCTCC
1 GCTTCCCTCGCTGCAGCCGCC
*
24607940 GCTTCCCTCGCTGCAGCCGCT
1 GCTTCCCTCGCTGCAGCCGCC
24607961 GCTTCCCTCGCT
1 GCTTCCCTCGCT
24607973 TTCGCCTCTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.04, C:0.46, G:0.20, T:0.30
Consensus pattern (21 bp):
GCTTCCCTCGCTGCAGCCGCC
Found at i:24612257 original size:34 final size:34
Alignment explanation
Indices: 24612218--24612680 Score: 126
Period size: 36 Copynumber: 13.2 Consensus size: 34
24612208 TGTATGCCCC
*
24612218 ATGTAAGTAATTTAAGCTATGTAAGTAATGTATT
1 ATGTAAGTAATGTAAGCTATGTAAGTAATGTATT
** ** * *
24612252 ATGTAAGTTGTGT-A-CTACATCA-TTATGTGAGTT
1 ATGTAAGTAATGTAAGCTATGTAAGTAATGT-A-TT
* * * * *
24612285 GTGT-A-TAATGTAAGTTAAG-AAGGTTATGTATA
1 ATGTAAGTAATGTAAGCTATGTAA-GTAATGTATT
24612317 ATGTAAGTAATGTAAGCTATGTAAGTAATGTATT
1 ATGTAAGTAATGTAAGCTATGTAAGTAATGTATT
*
24612351 ATGTAAGTTAA-G-AAGGTTATGT-A-TAATGTAAGTT
1 ATGTAAG-TAATGTAA-GCTATGTAAGTAATGT-A-TT
* * * * *
24612385 ACT-TAATTTATGTAAGTTATGTAAGTTATTTAATTT
1 A-TGTAAGTAATGTAAGCTATGTAAGTAATGT-A-TT
* * * * *
24612421 ATGTAAGTTATGTAAGTTATTTAATTTACT-TAATTT
1 ATGTAAGTAATGTAAGCTATGTAA-GTAATGT-A-TT
* * * * *
24612457 ATGTAAGTTATGTAAGTTATTTAATTTATGTAAGTT
1 ATGTAAGTAATGTAAGCTATGTAAGTAATGT-A-TT
* * * *
24612493 ATGTAAGTTATGTAAGTTATGTAAGTTATTTAATTT
1 ATGTAAGTAATGTAAGCTATGTAAGTAATGT-A-TT
* * * *
24612529 ACT-TAATTTATGTAAGTTATGTAAG-ATATTTAATTT
1 A-TGTAAGTAATGTAAGCTATGTAAGTA-ATGT-A-TT
* * * * *
24612565 ATGTAAGTTATGTAAGTTATTTAATTTATGTAAGTT
1 ATGTAAGTAATGTAAGCTATGTAAGTAATGT-A-TT
* * ** *
24612601 ATGTAAGTTATTTAATTTATGTAAGTTATGTAAGTT
1 ATGTAAGTAATGTAAGCTATGTAAGTAATGT-A-TT
* * ** *
24612637 ATGTAAGTTATTTAATTTATGTAAGTTATGTAAGTT
1 ATGTAAGTAATGTAAGCTATGTAAGTAATGT-A-TT
24612673 ATGTAAGT
1 ATGTAAGT
24612681 TATTTAATTT
Statistics
Matches: 354, Mismatches: 50, Indels: 48
0.78 0.11 0.11
Matches are distributed among these distances:
31 9 0.03
32 19 0.05
33 16 0.05
34 64 0.18
35 14 0.04
36 229 0.65
37 3 0.01
ACGTcount: A:0.35, C:0.02, G:0.17, T:0.46
Consensus pattern (34 bp):
ATGTAAGTAATGTAAGCTATGTAAGTAATGTATT
Found at i:24612327 original size:9 final size:9
Alignment explanation
Indices: 24612292--24612890 Score: 605
Period size: 9 Copynumber: 67.2 Consensus size: 9
24612282 GTTGTGTATA
24612292 ATGTAAGTT
1 ATGTAAGTT
*
24612301 AAG-AAGGTT
1 ATGTAA-GTT
*
24612310 ATGT-A-TA
1 ATGTAAGTT
*
24612317 ATGTAAGTA
1 ATGTAAGTT
*
24612326 ATGTAAGCT
1 ATGTAAGTT
*
24612335 ATGTAAGTA
1 ATGTAAGTT
24612344 ATGT-A-TT
1 ATGTAAGTT
24612351 ATGTAAGTT
1 ATGTAAGTT
*
24612360 AAG-AAGGTT
1 ATGTAA-GTT
*
24612369 ATGT-A-TA
1 ATGTAAGTT
24612376 ATGTAAGTT
1 ATGTAAGTT
*
24612385 ACT-TAATTT
1 A-TGTAAGTT
24612394 ATGTAAGTT
1 ATGTAAGTT
24612403 ATGTAAGTT
1 ATGTAAGTT
* *
24612412 ATTTAATTT
1 ATGTAAGTT
24612421 ATGTAAGTT
1 ATGTAAGTT
24612430 ATGTAAGTT
1 ATGTAAGTT
* *
24612439 ATTTAATTT
1 ATGTAAGTT
*
24612448 ACT-TAATTT
1 A-TGTAAGTT
24612457 ATGTAAGTT
1 ATGTAAGTT
24612466 ATGTAAGTT
1 ATGTAAGTT
* *
24612475 ATTTAATTT
1 ATGTAAGTT
24612484 ATGTAAGTT
1 ATGTAAGTT
24612493 ATGTAAGTT
1 ATGTAAGTT
24612502 ATGTAAGTT
1 ATGTAAGTT
24612511 ATGTAAGTT
1 ATGTAAGTT
* *
24612520 ATTTAATTT
1 ATGTAAGTT
*
24612529 ACT-TAATTT
1 A-TGTAAGTT
24612538 ATGTAAGTT
1 ATGTAAGTT
*
24612547 ATGTAAGAT
1 ATGTAAGTT
* *
24612556 ATTTAATTT
1 ATGTAAGTT
24612565 ATGTAAGTT
1 ATGTAAGTT
24612574 ATGTAAGTT
1 ATGTAAGTT
* *
24612583 ATTTAATTT
1 ATGTAAGTT
24612592 ATGTAAGTT
1 ATGTAAGTT
24612601 ATGTAAGTT
1 ATGTAAGTT
* *
24612610 ATTTAATTT
1 ATGTAAGTT
24612619 ATGTAAGTT
1 ATGTAAGTT
24612628 ATGTAAGTT
1 ATGTAAGTT
24612637 ATGTAAGTT
1 ATGTAAGTT
* *
24612646 ATTTAATTT
1 ATGTAAGTT
24612655 ATGTAAGTT
1 ATGTAAGTT
24612664 ATGTAAGTT
1 ATGTAAGTT
24612673 ATGTAAGTT
1 ATGTAAGTT
* *
24612682 ATTTAATTT
1 ATGTAAGTT
*
24612691 ACT-TAATTT
1 A-TGTAAGTT
24612700 ATGTAAGTT
1 ATGTAAGTT
*
24612709 ATGTAAGAT
1 ATGTAAGTT
* *
24612718 ATTTAATTT
1 ATGTAAGTT
* *
24612727 ATTTAATTT
1 ATGTAAGTT
24612736 ATGTAAGTT
1 ATGTAAGTT
24612745 ATGTAAGTT
1 ATGTAAGTT
* *
24612754 ATTTAATTT
1 ATGTAAGTT
*
24612763 ACT-TAATTT
1 A-TGTAAGTT
*
24612772 ATGTAAGTA
1 ATGTAAGTT
*
24612781 ATGTAAGAT
1 ATGTAAGTT
* *
24612790 ATTTAATTT
1 ATGTAAGTT
24612799 ATGTAAGTT
1 ATGTAAGTT
24612808 ATGTAAGTT
1 ATGTAAGTT
* *
24612817 ATTTAATTT
1 ATGTAAGTT
24612826 ATGTAAGTT
1 ATGTAAGTT
24612835 ATGTAAGTT
1 ATGTAAGTT
24612844 ATGTAAGTT
1 ATGTAAGTT
* *
24612853 ATTTAATTT
1 ATGTAAGTT
*
24612862 TTGTAAGTT
1 ATGTAAGTT
24612871 ATGTAA-TT
1 ATGTAAGTT
24612879 AATGTAAGTT
1 -ATGTAAGTT
24612889 AT
1 AT
24612891 TTAATTTGTG
Statistics
Matches: 492, Mismatches: 76, Indels: 44
0.80 0.12 0.07
Matches are distributed among these distances:
7 15 0.03
8 15 0.03
9 455 0.92
10 7 0.01
ACGTcount: A:0.35, C:0.01, G:0.15, T:0.49
Consensus pattern (9 bp):
ATGTAAGTT
Found at i:24617211 original size:115 final size:114
Alignment explanation
Indices: 24617060--24617297 Score: 370
Period size: 115 Copynumber: 2.1 Consensus size: 114
24617050 AAATATTTGT
* *
24617060 GGCGTTTTTAAATACGCCACTAAAAGAAAACAACAAAACGGCACCGTCTTTGTTACAGTTAAAGG
1 GGCGTTTTTAAATACACCACTAAAAGAAAACAACAAAACGGCACCGTCCTTGTTACAGTTAAAGG
* * *
24617125 AAATTTGTGGCGTTTC-TTCGTAAAACGCCGGTAAAATATCACTTTTAGC
66 AAATTTGCGGCGTTTCTTTAG-AAAACGCCGGTAAAATATCACCTTTAGC
* *
24617174 GGCGTTTTTCAAATGCACCACTAAAGGAAAACAACAAAACGGCACCGTCCTTGTTACAGTTAAAG
1 GGCGTTTTT-AAATACACCACTAAAAGAAAACAACAAAACGGCACCGTCCTTGTTACAGTTAAAG
*
24617239 GAAATTTGCGGCGTTTCTTTAGAAAACGCCGGTAATATATCACCTTTAGC
65 GAAATTTGCGGCGTTTCTTTAGAAAACGCCGGTAAAATATCACCTTTAGC
*
24617289 GGCATTTTT
1 GGCGTTTTT
24617298 TTATGAAGCG
Statistics
Matches: 113, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
114 9 0.08
115 101 0.89
116 3 0.03
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (114 bp):
GGCGTTTTTAAATACACCACTAAAAGAAAACAACAAAACGGCACCGTCCTTGTTACAGTTAAAGG
AAATTTGCGGCGTTTCTTTAGAAAACGCCGGTAAAATATCACCTTTAGC
Found at i:24617213 original size:261 final size:261
Alignment explanation
Indices: 24616687--24617222 Score: 887
Period size: 261 Copynumber: 2.1 Consensus size: 261
24616677 TAACACGGAT
* * *
24616687 AAAACGGCATCGTCATAAGATAACATTAAACATTTTTGCGGCGCTTTATCTAAAGCGCCACTAAT
1 AAAACGGCACCGTCATAAGATAACATTAAACATTTTTGCGGCACTTTAGCTAAAGCGCCACTAAT
* * * *
24616752 AAAAATAGGAAACGGCGTCGTTTCCTTAGCTCGTAATAAATATTTGTGGCGTTTTTAAAATGCGC
66 AAAAATAGGAAACGACGCCGTTTCCTCAGCTCGTAATAAATATTTGTGGCGTTTTTAAAATACGC
24616817 CACTAAAAGAAAACAACAAAACGGCACCGTCTTCGTTACAGTTAAAGGAAATTTATGGCGTTTCT
131 CACTAAAAGAAAACAACAAAACGGCACCGTCTTCGTTACAGTTAAAGGAAATTTATGGCGTTTCT
* * * * **
24616882 TCGTAAAACGCCGGTAATATATCACCTTTAGCGGCGTTTTTCATATGCGCCACTAATAACAAGGA
196 TCGTAAAACGCCGGTAAAATATCACCTTTAGCGGCGTTTTTCAAATGCACCACTAATAAAAACAA
24616947 C
261 C
*
24616948 AAAACGGCACCGTTATAAGATAACATTAAACATTTTTGCGGCACTTTAGCTAAAGCGCCACTAAT
1 AAAACGGCACCGTCATAAGATAACATTAAACATTTTTGCGGCACTTTAGCTAAAGCGCCACTAAT
24617013 AAAAATAGGAAACGACGCCGTTTCCTCAGCTCGTAATAAATATTTGTGGCGTTTTT-AAATACGC
66 AAAAATAGGAAACGACGCCGTTTCCTCAGCTCGTAATAAATATTTGTGGCGTTTTTAAAATACGC
* *
24617077 CACTAAAAGAAAACAACAAAACGGCACCGTCTTTGTTACAGTTAAAGGAAATTTGTGGCGTTTCT
131 CACTAAAAGAAAACAACAAAACGGCACCGTCTTCGTTACAGTTAAAGGAAATTTATGGCGTTTCT
*
24617142 TCGTAAAACGCCGGTAAAATATCACTTTTAGCGGCGTTTTTCAAATGCACCACTAA-AGGAAAAC
196 TCGTAAAACGCCGGTAAAATATCACCTTTAGCGGCGTTTTTCAAATGCACCACTAATA--AAAAC
24617206 AAC
259 AAC
24617209 AAAACGGCACCGTC
1 AAAACGGCACCGTC
24617223 CTTGTTACAG
Statistics
Matches: 255, Mismatches: 18, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
259 1 0.00
260 122 0.48
261 132 0.52
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.27
Consensus pattern (261 bp):
AAAACGGCACCGTCATAAGATAACATTAAACATTTTTGCGGCACTTTAGCTAAAGCGCCACTAAT
AAAAATAGGAAACGACGCCGTTTCCTCAGCTCGTAATAAATATTTGTGGCGTTTTTAAAATACGC
CACTAAAAGAAAACAACAAAACGGCACCGTCTTCGTTACAGTTAAAGGAAATTTATGGCGTTTCT
TCGTAAAACGCCGGTAAAATATCACCTTTAGCGGCGTTTTTCAAATGCACCACTAATAAAAACAA
C
Found at i:24617806 original size:21 final size:21
Alignment explanation
Indices: 24617772--24617832 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
24617762 AATCATAAAT
**
24617772 CCTAAACCCCAAACCTAAAAC
1 CCTAAACCGTAAACCTAAAAC
* **
24617793 TCTAAACTTTAAACCGT-AAAC
1 CCTAAACCGTAAACC-TAAAAC
24617814 CCTAAACCGTAAACCTAAA
1 CCTAAACCGTAAACCTAAA
24617833 CCATATTTTC
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
20 1 0.03
21 29 0.94
22 1 0.03
ACGTcount: A:0.46, C:0.33, G:0.03, T:0.18
Consensus pattern (21 bp):
CCTAAACCGTAAACCTAAAAC
Found at i:24617812 original size:14 final size:14
Alignment explanation
Indices: 24617802--24617834 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
24617792 CTCTAAACTT
24617802 TAAACCGTAAACCC
1 TAAACCGTAAACCC
24617816 TAAACCGTAAA-CC
1 TAAACCGTAAACCC
24617829 TAAACC
1 TAAACC
24617835 ATATTTTCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 8 0.42
14 11 0.58
ACGTcount: A:0.45, C:0.33, G:0.06, T:0.15
Consensus pattern (14 bp):
TAAACCGTAAACCC
Found at i:24618002 original size:20 final size:21
Alignment explanation
Indices: 24617964--24618013 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
24617954 TCTTCAATTT
24617964 CCAAACT-AAACCCTAAAACC
1 CCAAACTCAAACCCTAAAACC
* *
24617984 CTAAACTCAAA-CCTTAAACC
1 CCAAACTCAAACCCTAAAACC
24618004 CCAAACTCAA
1 CCAAACTCAA
24618014 TCTCTAACAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 23 0.88
21 3 0.12
ACGTcount: A:0.48, C:0.38, G:0.00, T:0.14
Consensus pattern (21 bp):
CCAAACTCAAACCCTAAAACC
Found at i:24618085 original size:35 final size:35
Alignment explanation
Indices: 24618046--24618119 Score: 87
Period size: 35 Copynumber: 2.1 Consensus size: 35
24618036 CCCAAATTAA
*
24618046 TAAACAGTATACCA-TAAATCTTAAACCCTAAACCC
1 TAAACAGTAGA-CATTAAATCTTAAACCCTAAACCC
* ***
24618081 TAAACTGTAGACATTAAATCTTAAATTTTAAACCC
1 TAAACAGTAGACATTAAATCTTAAACCCTAAACCC
24618116 TAAA
1 TAAA
24618120 ACCTAATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
34 2 0.06
35 31 0.94
ACGTcount: A:0.46, C:0.22, G:0.04, T:0.28
Consensus pattern (35 bp):
TAAACAGTAGACATTAAATCTTAAACCCTAAACCC
Found at i:24618732 original size:74 final size:76
Alignment explanation
Indices: 24618590--24618732 Score: 175
Period size: 74 Copynumber: 1.9 Consensus size: 76
24618580 CGCTAAAAGA
* * *
24618590 AAGCATTAGCGGCGCTTTCTTAGAAAACGCCGCTAAATCCACTGAAAGTTAAGAAAATGGTACCG
1 AAGCATTAGCGGCGCTTTCTTAGAAAACGCCGCTAAAGCCACTGAAAGATAAGAAAACGGTACCG
24618655 TTGGGCACCCC
66 TTGGGCACCCC
* * * ** *
24618666 AAGCATTAGCGGCGC-TTCATTA-AAAACGCCGCTGAGGCCTC-GAAAGATCTGAAAACGGTGCC
1 AAGCATTAGCGGCGCTTTC-TTAGAAAACGCCGCTAAAGCCACTGAAAGATAAGAAAACGGTACC
24618728 GTTGG
65 GTTGG
24618733 ACATATGGTT
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
74 21 0.37
75 18 0.32
76 18 0.32
ACGTcount: A:0.30, C:0.24, G:0.25, T:0.20
Consensus pattern (76 bp):
AAGCATTAGCGGCGCTTTCTTAGAAAACGCCGCTAAAGCCACTGAAAGATAAGAAAACGGTACCG
TTGGGCACCCC
Found at i:24620795 original size:37 final size:33
Alignment explanation
Indices: 24620754--24620861 Score: 90
Period size: 37 Copynumber: 3.0 Consensus size: 33
24620744 CAAGATAAAC
24620754 ATTAAATTTAATTTAATATTAAGATAATCACTTTAAT
1 ATTAAATTTAATTTAATATTAAGATAAT-A--TT-AT
** *
24620791 ATTAAATTAATAAAATACTATTAAGATAAGTATTAT
1 ATTAAATT--TAATTTAATATTAAGATAA-TATTAT
*
24620827 ATTAAATTTAATATTAAACTATTAAAATAATATTA
1 ATTAAATTTAAT-TT-AA-TATTAAGATAATATTA
24620862 ATTTTGGAAT
Statistics
Matches: 58, Mismatches: 7, Indels: 13
0.74 0.09 0.17
Matches are distributed among these distances:
34 3 0.05
35 1 0.02
36 16 0.28
37 20 0.34
39 17 0.29
40 1 0.02
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.43
Consensus pattern (33 bp):
ATTAAATTTAATTTAATATTAAGATAATATTAT
Found at i:24620814 original size:25 final size:25
Alignment explanation
Indices: 24620760--24620814 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
24620750 AAACATTAAA
*
24620760 TTTAATTTAATATTAAGATAATCAC
1 TTTAATTTAATATTAAGAAAATCAC
*
24620785 TTTAATATTAA-ATTAATAAAAT-AC
1 TTTAAT-TTAATATTAAGAAAATCAC
24620809 TATTAA
1 T-TTAA
24620815 GATAAGTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 3 0.12
25 19 0.73
26 4 0.15
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (25 bp):
TTTAATTTAATATTAAGAAAATCAC
Found at i:24628107 original size:27 final size:27
Alignment explanation
Indices: 24628043--24628238 Score: 165
Period size: 27 Copynumber: 7.4 Consensus size: 27
24628033 TACCCTCGAT
* * *
24628043 GGGTAAAATGACCGAAATATCTC-G-A
1 GGGTAAAATGACCGTAATACCCCTGTA
24628068 TGGGTAAAATGACCGTAATACCCCTGTA
1 -GGGTAAAATGACCGTAATACCCCTGTA
* *
24628096 GGGTAAAATGACCGTAATACTCTTGTA
1 GGGTAAAATGACCGTAATACCCCTGTA
* *
24628123 GGGTAAAATGATCGTAAT----CTATCA
1 GGGTAAAATGACCGTAATACCCCTGT-A
*
24628147 -GGTAAAATGACCATAAT-CCCCTTGTA
1 GGGTAAAATGACCGTAATACCCC-TGTA
* * * * *
24628173 GGTTAAAATAACCATAATGCCCCTTTA
1 GGGTAAAATGACCGTAATACCCCTGTA
* **
24628200 GGGTAAAATGACCGTAATGCCTTTGTA
1 GGGTAAAATGACCGTAATACCCCTGTA
24628227 GGGTAAAATGAC
1 GGGTAAAATGAC
24628239 TGCGATGCCC
Statistics
Matches: 141, Mismatches: 20, Indels: 17
0.79 0.11 0.10
Matches are distributed among these distances:
23 17 0.12
24 1 0.01
26 22 0.16
27 96 0.68
28 5 0.04
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (27 bp):
GGGTAAAATGACCGTAATACCCCTGTA
Found at i:24628173 original size:77 final size:77
Alignment explanation
Indices: 24628043--24628217 Score: 201
Period size: 77 Copynumber: 2.2 Consensus size: 77
24628033 TACCCTCGAT
* * * * *
24628043 GGGTAAAATGACCGAAATATCTCGATGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGAC
1 GGGTAAAATGACCGTAATCTATC-A--GGTAAAATGACCATAATACCCCTGTAGGGTAAAATAAC
* *
24628108 CGTAAT-ACTCTTGTA
63 CATAATGACCCTT-TA
* *
24628123 GGGTAAAATGATCGTAATCTATCAGGTAAAATGACCATAAT-CCCCTTGTAGGTTAAAATAACCA
1 GGGTAAAATGACCGTAATCTATCAGGTAAAATGACCATAATACCCC-TGTAGGGTAAAATAACCA
*
24628187 TAATGCCCCTTTA
65 TAATGACCCTTTA
24628200 GGGTAAAATGACCGTAAT
1 GGGTAAAATGACCGTAAT
24628218 GCCTTTGTAG
Statistics
Matches: 82, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
76 4 0.05
77 54 0.66
78 4 0.05
79 1 0.01
80 19 0.23
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (77 bp):
GGGTAAAATGACCGTAATCTATCAGGTAAAATGACCATAATACCCCTGTAGGGTAAAATAACCAT
AATGACCCTTTA
Found at i:24628309 original size:27 final size:27
Alignment explanation
Indices: 24628252--24628312 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
24628242 GATGCCCTTG
*
24628252 TTACTGGTGGCTCTGCCACAATCACTG
1 TTACTGGTGGCTCTGCCACAATCACTA
*
24628279 TTACTGGTGGCT-TGGCCACATAT-ATTA
1 TTACTGGTGGCTCT-GCCACA-ATCACTA
24628306 TTACTGG
1 TTACTGG
24628313 CAGATTTGCT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 1 0.03
27 27 0.90
28 2 0.07
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (27 bp):
TTACTGGTGGCTCTGCCACAATCACTA
Found at i:24628442 original size:32 final size:31
Alignment explanation
Indices: 24628361--24628443 Score: 80
Period size: 32 Copynumber: 2.6 Consensus size: 31
24628351 GATGCTAATA
* *
24628361 ATGGCTTTGTGTCGATCATAGTACCGTTACTG
1 ATGGC-TTGTGTCGATCATAGTACAGTTACCG
*
24628393 ATGGCTTG-GTGCTGATCATATTGA-AGTTACCG
1 ATGGCTTGTGT-C-GATCATAGT-ACAGTTACCG
24628425 ATGGCTGTGTGTCGATCAT
1 ATGGCT-TGTGTCGATCAT
24628444 TTCACTATTA
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
30 2 0.05
31 4 0.09
32 31 0.72
33 4 0.09
34 2 0.05
ACGTcount: A:0.19, C:0.17, G:0.28, T:0.36
Consensus pattern (31 bp):
ATGGCTTGTGTCGATCATAGTACAGTTACCG
Found at i:24628461 original size:32 final size:31
Alignment explanation
Indices: 24628419--24628564 Score: 123
Period size: 32 Copynumber: 4.6 Consensus size: 31
24628409 CATATTGAAG
*
24628419 TTACCGATGGCTGTGTGTCGATCATTTCACTA
1 TTACTGATGGCTGTGTG-CGATCATTTCACTA
* *
24628451 TTACTCATGGCTGTGTGCTGATCATATCACTA
1 TTACTGATGGCTGTGTGC-GATCATTTCACTA
* * *
24628483 CTACTGATGGCTTTGTGCCGATCATGTT-ACCA
1 TTACTGATGGCTGTGTG-CGATCAT-TTCACTA
* * * * *
24628515 TTACTGATGGTTGTGTACCGGTCATATCACTG
1 TTACTGATGGCTGTGT-GCGATCATTTCACTA
* *
24628547 CTACTGATGGCTTTGTGC
1 TTACTGATGGCTGTGTGC
24628565 CAATCACATT
Statistics
Matches: 89, Mismatches: 20, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
31 3 0.03
32 84 0.94
33 2 0.02
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.37
Consensus pattern (31 bp):
TTACTGATGGCTGTGTGCGATCATTTCACTA
Found at i:24628492 original size:64 final size:64
Alignment explanation
Indices: 24628424--24628570 Score: 188
Period size: 64 Copynumber: 2.3 Consensus size: 64
24628414 TGAAGTTACC
* * * * *
24628424 GATGGCTGTGTGTCGATCAT-TTCACTATTACTCATGGCTGTGTGCTGATCATATCACTACTACT
1 GATGGCTTTGTGCCGATCATGTT-ACCATTACTCATGGCTGTGTACCGATCATATCACTACTACT
* * * *
24628488 GATGGCTTTGTGCCGATCATGTTACCATTACTGATGGTTGTGTACCGGTCATATCACTGCTACT
1 GATGGCTTTGTGCCGATCATGTTACCATTACTCATGGCTGTGTACCGATCATATCACTACTACT
*
24628552 GATGGCTTTGTGCCAATCA
1 GATGGCTTTGTGCCGATCA
24628571 CATTACTGTA
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
64 70 0.97
65 2 0.03
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (64 bp):
GATGGCTTTGTGCCGATCATGTTACCATTACTCATGGCTGTGTACCGATCATATCACTACTACT
Found at i:24628545 original size:96 final size:96
Alignment explanation
Indices: 24628388--24628564 Score: 205
Period size: 96 Copynumber: 1.8 Consensus size: 96
24628378 ATAGTACCGT
* ** * *
24628388 TACTGATGGCTTGGTGCTGATCATATTGAAGTTACCGATGGCTGTGTGTCGATCATTTCACTATT
1 TACTGATGGCTTGGTGCCGATCATATTGAAGTTACCGATGGCTGTGTACCGATCATATCACTACT
24628453 ACTCATGGCTGTGTGCTGATCATATCACTAC
66 ACTCATGGCTGTGTGCTGATCATATCACTAC
* * * * * *
24628484 TACTGATGGCTTTGTGCCGATCATGTT-ACCA-TTACTGATGGTTGTGTACCGGTCATATCACTG
1 TACTGATGGCTTGGTGCCGATCATATTGA--AGTTACCGATGGCTGTGTACCGATCATATCACTA
* *
24628547 CTACTGATGGCTTTGTGC
64 CTACTCATGGCTGTGTGC
24628565 CAATCACATT
Statistics
Matches: 66, Mismatches: 13, Indels: 4
0.80 0.16 0.05
Matches are distributed among these distances:
95 1 0.02
96 64 0.97
97 1 0.02
ACGTcount: A:0.19, C:0.20, G:0.24, T:0.37
Consensus pattern (96 bp):
TACTGATGGCTTGGTGCCGATCATATTGAAGTTACCGATGGCTGTGTACCGATCATATCACTACT
ACTCATGGCTGTGTGCTGATCATATCACTAC
Found at i:24628606 original size:22 final size:21
Alignment explanation
Indices: 24628581--24628646 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
24628571 CATTACTGTA
24628581 CTTATGGCTTGTAGCCATTCTG
1 CTTATGGCTT-TAGCCATTCTG
* * *
24628603 CTTATAGCTTATAGCTATCCTG
1 CTTATGGCTT-TAGCCATTCTG
* *
24628625 TTTACGGCTCTTAGCCATTCTG
1 CTTATGGCT-TTAGCCATTCTG
24628647 ACTACTGGCA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
22 33 0.97
23 1 0.03
ACGTcount: A:0.17, C:0.24, G:0.18, T:0.41
Consensus pattern (21 bp):
CTTATGGCTTTAGCCATTCTG
Found at i:24628669 original size:26 final size:26
Alignment explanation
Indices: 24628640--24628692 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24628630 GGCTCTTAGC
* *
24628640 CATTCTGACTACTGGCAGCTCTACTG
1 CATTATGACTACTGGCAGCTATACTG
*
24628666 CATTATTACTACTGGCAGCTATACTG
1 CATTATGACTACTGGCAGCTATACTG
24628692 C
1 C
24628693 GATATTGGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.28, G:0.17, T:0.32
Consensus pattern (26 bp):
CATTATGACTACTGGCAGCTATACTG
Found at i:24636925 original size:17 final size:17
Alignment explanation
Indices: 24636903--24636962 Score: 59
Period size: 17 Copynumber: 3.6 Consensus size: 17
24636893 AAGATTTAAA
24636903 AAATATAAAAAAAAATC
1 AAATATAAAAAAAAATC
* ** *
24636920 AAATATATAAAAAGTTT
1 AAATATAAAAAAAAATC
* *
24636937 AAAAATAATAAAAAA-C
1 AAATATAAAAAAAAATC
24636953 AAATATAAAA
1 AAATATAAAA
24636963 GATTAATTTC
Statistics
Matches: 31, Mismatches: 12, Indels: 1
0.70 0.27 0.02
Matches are distributed among these distances:
16 8 0.26
17 23 0.74
ACGTcount: A:0.73, C:0.03, G:0.02, T:0.22
Consensus pattern (17 bp):
AAATATAAAAAAAAATC
Found at i:24639523 original size:98 final size:98
Alignment explanation
Indices: 24639354--24639548 Score: 329
Period size: 98 Copynumber: 2.0 Consensus size: 98
24639344 ATACAATAAA
* *
24639354 ACTTTTAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
24639419 CTTTTAGAATCCCAAACTCGAAATATTTCCTTT
66 CTTTTAGAATCCCAAACTCGAAATATTTCCTTT
*
24639452 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAA-T
* *
24639517 CC-TTTAGAATCTCAAACTCGGAATATTTCCTT
65 CCTTTTAGAATCCCAAACTCGAAATATTTCCTT
24639549 CATGATTTTT
Statistics
Matches: 91, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
98 88 0.97
99 3 0.03
ACGTcount: A:0.36, C:0.25, G:0.10, T:0.29
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
CTTTTAGAATCCCAAACTCGAAATATTTCCTTT
Found at i:24641539 original size:44 final size:44
Alignment explanation
Indices: 24641476--24642149 Score: 306
Period size: 45 Copynumber: 15.5 Consensus size: 44
24641466 AGTCTACTCT
* *
24641476 ACTGCAACTTCATGGAGATAGGATTGTCAGCTTTAATCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATTGTCAGCTTTAATCTGCTCC
* * * * *
24641520 ACTGCAACTTCAGGGAGATAAGATTTTCCATCTTCAGTTTGC-CTC
1 ACTGCAACTTCAGGGAGATAAGATTGT-CAGCTTTAATCTGCTC-C
* ** *
24641565 ACTGCAAATTCA-GGAGGATAAGACTTGTTTTGC-TTAGTCTGCTCC
1 ACTGCAACTTCAGGGA-GATAAGA-TTG-TCAGCTTTAATCTGCTCC
* * * *
24641610 ACTGCAACTTCAGGGAGATAAGACT-ACATGC---GATCTACT-C
1 ACTGCAACTTCAGGGAGATAAGATTGTCA-GCTTTAATCTGCTCC
* * **
24641650 TCTGCAACTTCAGGGAGATAAGATCTG--AGGTTTTAATCCACTCC
1 ACTGCAACTTCAGGGAGATAAGAT-TGTCA-GCTTTAATCTGCTCC
* * * *
24641694 ACTGTAACTTCAGGAAGATAGGATTGTCGGCTTTAATCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATTGTCAGCTTTAATCTGCTCC
* * ** * *
24641738 ACTGTAACTTCAGGGAGATAAGATGTGCCTTCTTCAGTCTGC-CTC
1 ACTGCAACTTCAGGGAGATAAGAT-TGTCAGCTTTAATCTGCTC-C
* ** *
24641783 ACTGCAACTTCA-AGAGGATAAGACTTGCTTTGC-TTAGTCTGCTCC
1 ACTGCAACTTCAGGGA-GATAAGA-TTG-TCAGCTTTAATCTGCTCC
* * *** *
24641828 ACTGCAACTTCAGGGAGATAAGA--CT-AGATGCGATCTACT-C
1 ACTGCAACTTCAGGGAGATAAGATTGTCAGCTTTAATCTGCTCC
* * * **
24641868 TCTGTAACTTCAGGGAGATAAGATCTG--AGGTTTTAATCCACTCC
1 ACTGCAACTTCAGGGAGATAAGAT-TGTCA-GCTTTAATCTGCTCC
* * * *
24641912 ACTGTAACTTCAGGGAGATAGGATTGTCGGCTTTAATATGCTCC
1 ACTGCAACTTCAGGGAGATAAGATTGTCAGCTTTAATCTGCTCC
* * * * ** *
24641956 ACTGTAACTTCAGGGAGATAAGATTTGCCATCTTCAGCCTAC-CTC
1 ACTGCAACTTCAGGGAGATAAGA-TTGTCAGCTTTAATCTGCTC-C
* * ** * *
24642001 ACTGCAACTTCA-GAAGGATAAGACTCGCTTTG-TTTAGTCTGCTTC
1 ACTGCAACTTCAGGGA-GATAAGA-TTG-TCAGCTTTAATCTGCTCC
* * ***
24642046 ACTGCAACTTCAGGGAGATAAGA--CT-AGATGCGATCTGCT-C
1 ACTGCAACTTCAGGGAGATAAGATTGTCAGCTTTAATCTGCTCC
* * * *
24642086 TCTGCAACTTCAGAGAGATAAGATATG--AGGTTTTAATCCGCTCC
1 ACTGCAACTTCAGGGAGATAAGAT-TGTCA-GCTTTAATCTGCTCC
* *
24642130 ACTGCAACTTTAAGGAGATA
1 ACTGCAACTTCAGGGAGATA
24642150 GGAATCAATT
Statistics
Matches: 474, Mismatches: 113, Indels: 86
0.70 0.17 0.13
Matches are distributed among these distances:
40 71 0.15
41 20 0.04
42 2 0.00
43 28 0.06
44 163 0.34
45 174 0.37
46 15 0.03
47 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (44 bp):
ACTGCAACTTCAGGGAGATAAGATTGTCAGCTTTAATCTGCTCC
Found at i:24641861 original size:218 final size:217
Alignment explanation
Indices: 24641471--24642152 Score: 1087
Period size: 218 Copynumber: 3.1 Consensus size: 217
24641461 CTACCAGTCT
* * *
24641471 ACTCTACTGCAACTTCATGGAGATAGGATTGTCAGCTTTAATCTGCTCCACTGCAACTTCAGGGA
1 ACTCCACTGCAACTTCA-GGAGATAGGATTGTCGGCTTTAATCTGCTCCACTGTAACTTCAGGGA
* * * * *
24641536 GATAAGATTTTCCATCTTCAGTTTGCCTCACTGCAAATTCAGGAGGATAAGACTTGTTTTGCTTA
65 GATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAAGAGGATAAGACTTGCTTTGCTTA
*
24641601 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTACATGCGATCTACTCTCTGCAACTTCAGGGA
130 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTACTCTCTGCAACTTCAGGGA
24641666 GATAAGATCTGAGGTTTTAATCC
195 GATAAGATCTGAGGTTTTAATCC
*
24641689 ACTCCACTGTAACTTCAGGAAGATAGGATTGTCGGCTTTAATCTGCTCCACTGTAACTTCAGGGA
1 ACTCCACTGCAACTTCAGG-AGATAGGATTGTCGGCTTTAATCTGCTCCACTGTAACTTCAGGGA
* *
24641754 GATAAGATGTGCCTTCTTCAGTCTGCCTCACTGCAACTTCAAGAGGATAAGACTTGCTTTGCTTA
65 GATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAAGAGGATAAGACTTGCTTTGCTTA
*
24641819 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTACTCTCTGTAACTTCAGGGA
130 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTACTCTCTGCAACTTCAGGGA
24641884 GATAAGATCTGAGGTTTTAATCC
195 GATAAGATCTGAGGTTTTAATCC
* *
24641907 ACTCCACTGTAACTTCAGGGAGATAGGATTGTCGGCTTTAATATGCTCCACTGTAACTTCAGGGA
1 ACTCCACTGCAACTTCA-GGAGATAGGATTGTCGGCTTTAATCTGCTCCACTGTAACTTCAGGGA
* * * *
24641972 GATAAGATTTGCCATCTTCAGCCTACCTCACTGCAACTTC-AGAAGGATAAGACTCGCTTTGTTT
65 GATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAAG-AGGATAAGACTTGCTTTGCTT
* * *
24642036 AGTCTGCTTCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAG
129 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTACTCTCTGCAACTTCAGGG
*
24642101 AGATAAGATATGAGGTTTTAATCC
194 AGATAAGATCTGAGGTTTTAATCC
* *
24642125 GCTCCACTGCAACTTTAAGGAGATAGGA
1 ACTCCACTGCAAC-TTCAGGAGATAGGA
24642153 ATCAATTTAT
Statistics
Matches: 432, Mismatches: 28, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
217 4 0.01
218 423 0.98
219 5 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (217 bp):
ACTCCACTGCAACTTCAGGAGATAGGATTGTCGGCTTTAATCTGCTCCACTGTAACTTCAGGGAG
ATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAAGAGGATAAGACTTGCTTTGCTTAG
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTACTCTCTGCAACTTCAGGGAG
ATAAGATCTGAGGTTTTAATCC
Found at i:24653712 original size:98 final size:98
Alignment explanation
Indices: 24653543--24653737 Score: 336
Period size: 98 Copynumber: 2.0 Consensus size: 98
24653533 ATACAATAAA
* *
24653543 ACTTTAAAAGAAAATCCACTCATCTAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATC
1 ACTTTAAAAGAAAATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
24653608 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
* * *
24653641 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAAAATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
*
24653706 CCTTTAGAATCTCAAACTCGGAATATTTCCTT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCTT
24653738 CATTATTTCT
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 91 1.00
ACGTcount: A:0.37, C:0.24, G:0.11, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAAAATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATC
CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
Found at i:24654164 original size:11 final size:10
Alignment explanation
Indices: 24654143--24654167 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
24654133 CAACATTATT
24654143 AAAATAAAAA
1 AAAATAAAAA
24654153 AAAATAAAAA
1 AAAATAAAAA
24654163 AAAAT
1 AAAAT
24654168 GTATACATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (10 bp):
AAAATAAAAA
Found at i:24657644 original size:15 final size:16
Alignment explanation
Indices: 24657615--24657644 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24657605 CAAACATGCT
24657615 TTAACACATTATCAAA
1 TTAACACATTATCAAA
24657631 TTAACACA-TATCAA
1 TTAACACATTATCAA
24657645 CAAGACACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:24660170 original size:21 final size:21
Alignment explanation
Indices: 24660130--24660170 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
24660120 ATAGAAATGA
* *
24660130 GGTCATACCACTTGACCTTAG
1 GGTCATACCACTTCAACTTAG
*
24660151 GGTCATATCACTTCAACTTA
1 GGTCATACCACTTCAACTTA
24660171 ATAAATCACT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.32
Consensus pattern (21 bp):
GGTCATACCACTTCAACTTAG
Found at i:24662969 original size:16 final size:16
Alignment explanation
Indices: 24662948--24662980 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
24662938 CTCGCTGTAT
24662948 TGGAATAGAGACGTAA
1 TGGAATAGAGACGTAA
*
24662964 TGGAATAGAGGCGTAA
1 TGGAATAGAGACGTAA
24662980 T
1 T
24662981 AGGTAATTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.33, T:0.21
Consensus pattern (16 bp):
TGGAATAGAGACGTAA
Found at i:24663049 original size:44 final size:46
Alignment explanation
Indices: 24662962--24663054 Score: 154
Period size: 44 Copynumber: 2.1 Consensus size: 46
24662952 ATAGAGACGT
* *
24662962 AATGGAATAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAATGG
1 AATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAATAG
24663008 AATGGAATAGAGGCGTAAT-GGT-ATTCTTGTGTTTGGTTGAATAG
1 AATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAATAG
24663052 AAT
1 AAT
24663055 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
44 23 0.51
45 3 0.07
46 19 0.42
ACGTcount: A:0.29, C:0.04, G:0.30, T:0.37
Consensus pattern (46 bp):
AATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAATAG
Found at i:24663278 original size:41 final size:41
Alignment explanation
Indices: 24663227--24663348 Score: 112
Period size: 41 Copynumber: 3.0 Consensus size: 41
24663217 TAATTTAATA
24663227 ATAATATATAATTTAATAAAATATATGAATTT-ACTAAAATC
1 ATAATATATAATTTAATAAAATATAT-AATTTAACTAAAATC
* * *
24663268 ATAATATATAA--TACTATAAA-ATATAATTTAAAATAATTATC
1 ATAATATATAATTTAATA-AAATATATAATTT-AACTAA-AATC
*
24663309 ATTAA-ATATAATTTAATAAAAATATATAATTTGA-TAAAAT
1 A-TAATATATAATTTAAT-AAAATATATAATTTAACTAAAAT
24663349 TCTTAGTATT
Statistics
Matches: 66, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
38 5 0.08
39 8 0.12
40 7 0.11
41 23 0.35
42 6 0.09
43 7 0.11
44 10 0.15
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.39
Consensus pattern (41 bp):
ATAATATATAATTTAATAAAATATATAATTTAACTAAAATC
Found at i:24663407 original size:61 final size:62
Alignment explanation
Indices: 24663251--24663435 Score: 170
Period size: 59 Copynumber: 3.0 Consensus size: 62
24663241 AATAAAATAT
* *
24663251 ATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATCATTAA
1 ATGAATTTACTAAAATCATAATATATAATACTATAAAATAT-ACTTAAAATAAATATCATTAA
* * * * * *
24663314 ATATAATTTA--ATAA--A-AATATATAAT-TTGATAAAAT-T-CTTAGTATTAAATATTATTAA
1 AT-GAATTTACTAAAATCATAATATATAATACT-ATAAAATATACTTA-AAATAAATATCATTAA
* * *
24663371 ATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTAA
1 ATGAATTTACTAAAATCATAATATATAATACTATAAAATAT-ACTTAAAATAAATATCATTAA
24663434 AT
1 AT
24663436 ATAATTTATA
Statistics
Matches: 95, Mismatches: 15, Indels: 24
0.71 0.11 0.18
Matches are distributed among these distances:
56 9 0.09
57 14 0.15
58 5 0.05
59 17 0.18
60 2 0.02
61 17 0.18
62 5 0.05
63 17 0.18
64 9 0.09
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (62 bp):
ATGAATTTACTAAAATCATAATATATAATACTATAAAATATACTTAAAATAAATATCATTAA
Found at i:24672692 original size:20 final size:20
Alignment explanation
Indices: 24672667--24672708 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
24672657 CCTTGACCAG
24672667 GTCACCAACTCAGTTAGCAA
1 GTCACCAACTCAGTTAGCAA
24672687 GTCACCAACTCAGTTAGCAA
1 GTCACCAACTCAGTTAGCAA
24672707 GT
1 GT
24672709 TATGAGGATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.29, G:0.17, T:0.21
Consensus pattern (20 bp):
GTCACCAACTCAGTTAGCAA
Found at i:24672887 original size:18 final size:19
Alignment explanation
Indices: 24672864--24672906 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
24672854 ACTAAAGTTT
24672864 TTTTAATATTT-TTAT-ACA
1 TTTTAAT-TTTATTATCACA
24672882 TTTTAATTTTATTATGCACA
1 TTTTAATTTTATTAT-CACA
24672902 TTTTA
1 TTTTA
24672907 TTACCTTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 3 0.14
18 11 0.50
20 8 0.36
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.60
Consensus pattern (19 bp):
TTTTAATTTTATTATCACA
Found at i:24675973 original size:91 final size:94
Alignment explanation
Indices: 24675804--24676031 Score: 259
Period size: 91 Copynumber: 2.4 Consensus size: 94
24675794 TGACTCTATC
* *
24675804 AAATAAAATATCA-ATTTTATATTTAAATTAAAAAAACACATTTACAAAAAAAAAAGATACAATA
1 AAATAAAATATCATTTTTTATATTTAAATT-AAAAAATACATTTA-AAAAAAAAAAGATACAATA
* * * *
24675868 CACTTGTGGTGCCATTCTTAAT-GTCTCGACA
64 CACTGGTAGCGCCATTCTTAATGGT-TCCACA
* *
24675899 AAATAAAATATCATTTTTTATATTTAAATTAAAAAATACA-TT-AAAAAAACATG-TACAATACA
1 AAATAAAATATCATTTTTTATATTTAAATTAAAAAATACATTTAAAAAAAAAAAGATACAATACA
*
24675961 CTGGTAGCGCCATTCTTAATGGTTCCACC
66 CTGGTAGCGCCATTCTTAATGGTTCCACA
* *
24675990 AAATAAAATATGATTTTTTTTAATTTTTAAATTTAAAAAATA
1 AAATAAAATATCA--TTTTTT-ATATTTAAA-TTAAAAAATA
24676032 AAAAAAATAT
Statistics
Matches: 116, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
91 42 0.36
92 11 0.09
93 6 0.05
94 10 0.09
95 32 0.28
96 15 0.13
ACGTcount: A:0.47, C:0.12, G:0.07, T:0.35
Consensus pattern (94 bp):
AAATAAAATATCATTTTTTATATTTAAATTAAAAAATACATTTAAAAAAAAAAAGATACAATACA
CTGGTAGCGCCATTCTTAATGGTTCCACA
Found at i:24677300 original size:44 final size:44
Alignment explanation
Indices: 24677202--24677288 Score: 156
Period size: 44 Copynumber: 2.0 Consensus size: 44
24677192 TATTAATCAA
* *
24677202 GTAATAAAACCATCCAAACAAGCAGTCAAGCTAGCAATTATAAC
1 GTAATAAAATCATCCAAACAAGCAGTCAAGCAAGCAATTATAAC
24677246 GTAATAAAATCATCCAAACAAGCAGTCAAGCAAGCAATTATAA
1 GTAATAAAATCATCCAAACAAGCAGTCAAGCAAGCAATTATAA
24677289 TGTTAAAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.49, C:0.21, G:0.11, T:0.18
Consensus pattern (44 bp):
GTAATAAAATCATCCAAACAAGCAGTCAAGCAAGCAATTATAAC
Found at i:24688120 original size:34 final size:34
Alignment explanation
Indices: 24688071--24688146 Score: 125
Period size: 34 Copynumber: 2.2 Consensus size: 34
24688061 GAGTTAGTTT
*
24688071 ATTAACTTTAGTTCAGCTCAAATAAGTGTTAGTA
1 ATTAATTTTAGTTCAGCTCAAATAAGTGTTAGTA
* *
24688105 ATTAATTTTATTTCAGCTTAAATAAGTGTTAGTA
1 ATTAATTTTAGTTCAGCTCAAATAAGTGTTAGTA
24688139 ATTAATTT
1 ATTAATTT
24688147 GTTTAAATCT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.36, C:0.08, G:0.12, T:0.45
Consensus pattern (34 bp):
ATTAATTTTAGTTCAGCTCAAATAAGTGTTAGTA
Found at i:24698481 original size:105 final size:105
Alignment explanation
Indices: 24698265--24698452 Score: 254
Period size: 105 Copynumber: 1.8 Consensus size: 105
24698255 AGATTAAACT
* * * * *
24698265 TAATCACTTTGATATTAAATTAATATAATACTTATTAAGATAAATATTAGATTAAATTTAATATT
1 TAATCACTTTAATATTAAATTAATATAATACTCATCAAGAGAAATATTAAATTAAATTTAATATT
* * *
24698330 AAATATTATTAAATTAATAGAATATTTATCTAAAATTAAGA
66 AAATACTATTAAAATAATA-AATATTTATCGAAAATTAAGA
* * *
24698371 TAATCACTTTAATATTAAATTAATATAGTAC-CATCAAGAGAAGTATTAAATTAAATTTTATATT
1 TAATCACTTTAATATTAAATTAATATAATACTCATCAAGAGAAATATTAAATTAAATTTAATATT
24698435 AAA-ACTATTAAAATAATA
66 AAATACTATTAAAATAATA
24698453 TTATTTTTGG
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
104 13 0.18
105 30 0.42
106 29 0.40
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.40
Consensus pattern (105 bp):
TAATCACTTTAATATTAAATTAATATAATACTCATCAAGAGAAATATTAAATTAAATTTAATATT
AAATACTATTAAAATAATAAATATTTATCGAAAATTAAGA
Found at i:24713395 original size:25 final size:25
Alignment explanation
Indices: 24713357--24713519 Score: 93
Period size: 25 Copynumber: 6.6 Consensus size: 25
24713347 TGTAATCGGG
* * *
24713357 AAGCTCTTTCGAGCCATATAACAGA
1 AAGCTCATACGAGCCATATAACGGA
* ** *
24713382 AAGCTCATATGAGCTGTATAACGGG
1 AAGCTCATACGAGCCATATAACGGA
* * * *
24713407 AAGCTCTTACGAGCCAAATATCGGG
1 AAGCTCATACGAGCCATATAACGGA
24713432 AAGCTCATACGAGCCATA-AAC-GA
1 AAGCTCATACGAGCCATATAACGGA
* * *
24713455 GAAGCTCA-AGAGAGTCAT-TAATCGGG
1 -AAGCTCATA-CGAGCCATATAA-CGGA
* *
24713481 AAGCTCATGA-GAGCCAAATATCGGA
1 AAGCTCAT-ACGAGCCATATAACGGA
* *
24713506 AAGCTTATAAGAGC
1 AAGCTCATACGAGC
24713520 TGTGGTGTGT
Statistics
Matches: 104, Mismatches: 25, Indels: 18
0.71 0.17 0.12
Matches are distributed among these distances:
23 2 0.02
24 18 0.17
25 80 0.77
26 3 0.03
27 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (25 bp):
AAGCTCATACGAGCCATATAACGGA
Found at i:24713495 original size:74 final size:75
Alignment explanation
Indices: 24713351--24713519 Score: 188
Period size: 74 Copynumber: 2.3 Consensus size: 75
24713341 CAAGCATGTA
* * * *
24713351 ATCGGGAAGCTCTTTCGAGCCATATAACAGAAAGCTCATATGAGCTGTATAACGGGAAGCTCTTA
1 ATCGGGAAGCTCATACGAGCCATATAACAGAAAGCTCATATGAGCAGTATAACGGGAAGCTCTGA
24713416 CGAGCCAAAT
66 CGAGCCAAAT
24713426 ATCGGGAAGCTCATACGAGCCATA-AAC-GAGAAGCTCA-A-GAG-AGTCATTAATCGGGAAGCT
1 ATCGGGAAGCTCATACGAGCCATATAACAGA-AAGCTCATATGAGCAGT-A-TAA-CGGGAAGCT
24713486 CATGA-GAGCCAAAT
62 C-TGACGAGCCAAAT
* * *
24713500 ATCGGAAAGCTTATAAGAGC
1 ATCGGGAAGCTCATACGAGC
24713520 TGTGGTGTGT
Statistics
Matches: 82, Mismatches: 7, Indels: 11
0.82 0.07 0.11
Matches are distributed among these distances:
71 2 0.02
72 4 0.05
73 6 0.07
74 46 0.56
75 24 0.29
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.20
Consensus pattern (75 bp):
ATCGGGAAGCTCATACGAGCCATATAACAGAAAGCTCATATGAGCAGTATAACGGGAAGCTCTGA
CGAGCCAAAT
Found at i:24715679 original size:26 final size:26
Alignment explanation
Indices: 24715641--24715690 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
24715631 CAATAATTCA
24715641 GGGAATCAACACTTAGCAACCCCTCG
1 GGGAATCAACACTTAGCAACCCCTCG
**
24715667 GGGAATCTGCACTTAGCAACCCCT
1 GGGAATCAACACTTAGCAACCCCT
24715691 TTTTGATCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.34, G:0.20, T:0.18
Consensus pattern (26 bp):
GGGAATCAACACTTAGCAACCCCTCG
Found at i:24715711 original size:41 final size:41
Alignment explanation
Indices: 24715664--24715773 Score: 175
Period size: 41 Copynumber: 2.7 Consensus size: 41
24715654 TAGCAACCCC
24715664 TCGGGGAATCTGCACTTAGCAACCCCTTTTTGATCAGTGAT
1 TCGGGGAATCTGCACTTAGCAACCCCTTTTTGATCAGTGAT
* * * *
24715705 TTGGGGAATCTGCATTTAGCAACCCTTTTTTTATCAGTGAT
1 TCGGGGAATCTGCACTTAGCAACCCCTTTTTGATCAGTGAT
*
24715746 TCGAGGAATCTGCACTTAGCAACCCCTT
1 TCGGGGAATCTGCACTTAGCAACCCCTT
24715774 ACATTCAATG
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 61 1.00
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.34
Consensus pattern (41 bp):
TCGGGGAATCTGCACTTAGCAACCCCTTTTTGATCAGTGAT
Found at i:24715864 original size:19 final size:20
Alignment explanation
Indices: 24715820--24715865 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
24715810 TCTGGAATCT
* *
24715820 TATTTTACAACATTTTACCA
1 TATTTTTCAACATTTAACCA
24715840 -ACTTTTTCAA-ATTTAACCA
1 TA-TTTTTCAACATTTAACCA
24715859 TATTTTT
1 TATTTTT
24715866 GTAATCTACA
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.33, C:0.17, G:0.00, T:0.50
Consensus pattern (20 bp):
TATTTTTCAACATTTAACCA
Found at i:24721482 original size:20 final size:20
Alignment explanation
Indices: 24721441--24721486 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
24721431 TAAATATTAT
**
24721441 TATAAAAATATATGAATGTA
1 TATAAAAATATATGAAACTA
24721461 TATAAAACATATAT-AAACTA
1 TATAAAA-ATATATGAAACTA
24721481 TA-AAAA
1 TATAAAA
24721487 TAAAATGATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 4 0.17
20 13 0.57
21 6 0.26
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.30
Consensus pattern (20 bp):
TATAAAAATATATGAAACTA
Found at i:24723212 original size:50 final size:50
Alignment explanation
Indices: 24723158--24723632 Score: 290
Period size: 50 Copynumber: 9.5 Consensus size: 50
24723148 TAAGAAGGTA
* * * * *
24723158 AGATCCGTCATTGTGGCTTCAATCTTTTTAATTACGCTGTCGGGGAAACC
1 AGATCCGCCGTTGTGACTTCAATCTTTTTAATTGCACTGTCGGGGAAACC
* * * * * * ***
24723208 AGATCCGCCATTGTGACTTCAAT-TTGCTTCATTGCACCGCCAGGGAAGTA
1 AGATCCGCCGTTGTGACTTCAATCTT-TTTAATTGCACTGTCGGGGAAACC
* * * * ***
24723258 AGATTCGTCGTTGTGGCTTCAATCTTTTAAATTGTGTTGTCGGGGAAACC
1 AGATCCGCCGTTGTGACTTCAATCTTTTTAATTGCACTGTCGGGGAAACC
* * ** ** * * * ***
24723308 AAATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCG-CTAGGGAAGTA
1 AGATCCGCCGTTGTGACTTCAATCTTTTTAATTGCACTGTC-GGGGAAACC
* *
24723358 AGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCACTATCGGGGAAACC
1 AGATCCGCCGTTGTGACTTCAATCTTTTTAATTGCACTGTCGGGGAAACC
* * ** ** * * * * ***
24723408 AGATCTGTCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAGTA
1 AGATCCGCCGTTGTGACTTCAATCTTTTTAATTGCACTGTCGGGGAAACC
* *
24723458 AGATCTGCCGTTGTGGCTTCAATCTTTTTAATTGCACTGTCGGGGAAACC
1 AGATCCGCCGTTGTGACTTCAATCTTTTTAATTGCACTGTCGGGGAAACC
** * * ** * * * * ***
24723508 AGATTTGCCGTTGTGATTTCAAT-TTGCTCCACTGCACCGCCCGGGAAGTA
1 AGATCCGCCGTTGTGACTTCAATCTT-TTTAATTGCACTGTCGGGGAAACC
* * *
24723558 AGATCCGCTGTTGTGGCTTCAATCTTTTTAATTGCGCTGTCGGGGAAACC
1 AGATCCGCCGTTGTGACTTCAATCTTTTTAATTGCACTGTCGGGGAAACC
**
24723608 AGATCTACCGTTGTGACTTCAATCT
1 AGATCCGCCGTTGTGACTTCAATCT
24723633 GCTCCACTAC
Statistics
Matches: 298, Mismatches: 121, Indels: 12
0.69 0.28 0.03
Matches are distributed among these distances:
49 5 0.02
50 288 0.97
51 5 0.02
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (50 bp):
AGATCCGCCGTTGTGACTTCAATCTTTTTAATTGCACTGTCGGGGAAACC
Found at i:24723212 original size:100 final size:100
Alignment explanation
Indices: 24723138--24723692 Score: 815
Period size: 100 Copynumber: 5.5 Consensus size: 100
24723128 AATTTGTTCA
* * * * *
24723138 ACTGCACCGCTA-AGAAGGTAAGATCCGTCATTGTGGCTTCAATCTTTTTAATTACGCTGTCGGG
1 ACTGCACCGCCAGGGAA-GTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCGCTGTCGGG
* * * *
24723202 GAAACCAGATCCGCCATTGTGACTTCAATTTGCTTC
65 GAAACCAGATCTGCCGTTGTGACTTCAATCTGCTCC
* * * * * *
24723238 ATTGCACCGCCAGGGAAGTAAGATTCGTCGTTGTGGCTTCAATCTTTTAAATTGTGTTGTCGGGG
1 ACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCGCTGTCGGGG
*
24723303 AAACCAAATCTGCCGTTGTGACTTCAATCTGCTCC
66 AAACCAGATCTGCCGTTGTGACTTCAATCTGCTCC
* * *
24723338 ACTGCACCGCTAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCACTATCGGGG
1 ACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCGCTGTCGGGG
*
24723403 AAACCAGATCTGTCGTTGTGACTTCAATCTGCTCC
66 AAACCAGATCTGCCGTTGTGACTTCAATCTGCTCC
* *
24723438 ACTGCACCGCCAGGGAAGTAAGATCTGCCGTTGTGGCTTCAATCTTTTTAATTGCACTGTCGGGG
1 ACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCGCTGTCGGGG
* * *
24723503 AAACCAGATTTGCCGTTGTGATTTCAATTTGCTCC
66 AAACCAGATCTGCCGTTGTGACTTCAATCTGCTCC
* *
24723538 ACTGCACCGCCCGGGAAGTAAGATCCGCTGTTGTGGCTTCAATCTTTTTAATTGCGCTGTCGGGG
1 ACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCGCTGTCGGGG
*
24723603 AAACCAGATCTACCGTTGTGACTTCAATCTGCTCC
66 AAACCAGATCTGCCGTTGTGACTTCAATCTGCTCC
* * *
24723638 ACTACACCGCCAGGGAAGTAAGATCTGCCGTTGTGGCTTCAATCTTTTAAATTGC
1 ACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGC
24723693 AATGTCAAAG
Statistics
Matches: 409, Mismatches: 45, Indels: 2
0.90 0.10 0.00
Matches are distributed among these distances:
100 406 0.99
101 3 0.01
ACGTcount: A:0.22, C:0.24, G:0.23, T:0.31
Consensus pattern (100 bp):
ACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCGCTGTCGGGG
AAACCAGATCTGCCGTTGTGACTTCAATCTGCTCC
Found at i:24723654 original size:50 final size:50
Alignment explanation
Indices: 24723300--24723682 Score: 282
Period size: 50 Copynumber: 7.7 Consensus size: 50
24723290 TGTGTTGTCG
*
24723300 GGGAAACCAA-ATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCTA
1 GGGAAA-CAAGATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCA
** * * ** ** * *** *
24723350 GGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCACTATCG
1 GGGAAACAAGATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCA
* *
24723400 GGGAAACCAGATCTGTCGTTGTGACTTCAATCTGCTCCACTGCACCGCCA
1 GGGAAACAAGATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCA
** * ** ** * * * *
24723450 GGGAAGTAAGATCTGCCGTTGTGGCTTCAATCTTTTTAATTGCACTGTCG
1 GGGAAACAAGATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCA
* * * * *
24723500 GGGAAACCAGATTTGCCGTTGTGATTTCAATTTGCTCCACTGCACCGCCC
1 GGGAAACAAGATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCA
** * * * ** ** * * * * *
24723550 GGGAAGTAAGATCCGCTGTTGTGGCTTCAATCTTTTTAATTGCGCTGTCG
1 GGGAAACAAGATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCA
* * *
24723600 GGGAAACCAGATCTACCGTTGTGACTTCAATCTGCTCCACTACACCGCCA
1 GGGAAACAAGATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCA
** *
24723650 GGGAAGTAAGATCTGCCGTTGTGGCTTCAATCT
1 GGGAAACAAGATCTGCCGTTGTGACTTCAATCT
24723683 TTTAAATTGC
Statistics
Matches: 235, Mismatches: 97, Indels: 2
0.70 0.29 0.01
Matches are distributed among these distances:
49 2 0.01
50 233 0.99
ACGTcount: A:0.22, C:0.26, G:0.23, T:0.29
Consensus pattern (50 bp):
GGGAAACAAGATCTGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCA
Found at i:24725149 original size:15 final size:16
Alignment explanation
Indices: 24725128--24725185 Score: 63
Period size: 15 Copynumber: 3.9 Consensus size: 16
24725118 TTAGCCTCTC
24725128 CATTTTT-ATTTTTTT
1 CATTTTTCATTTTTTT
* *
24725143 TATTTTTCA-GTTTTT
1 CATTTTTCATTTTTTT
24725158 CATTTTTCA--TTTTT
1 CATTTTTCATTTTTTT
24725172 CA-TTTTCATTTTTT
1 CATTTTTCATTTTTT
24725186 CATATTTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
13 6 0.16
14 7 0.19
15 23 0.62
16 1 0.03
ACGTcount: A:0.14, C:0.10, G:0.02, T:0.74
Consensus pattern (16 bp):
CATTTTTCATTTTTTT
Found at i:24725170 original size:13 final size:14
Alignment explanation
Indices: 24725138--24725184 Score: 69
Period size: 15 Copynumber: 3.4 Consensus size: 14
24725128 CATTTTTATT
*
24725138 TTTTTTATTTTTCA
1 TTTTTCATTTTTCA
24725152 GTTTTTCATTTTTCA
1 -TTTTTCATTTTTCA
24725167 TTTTTCA-TTTTCA
1 TTTTTCATTTTTCA
24725180 TTTTT
1 TTTTT
24725185 TCATATTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
13 11 0.35
14 7 0.23
15 13 0.42
ACGTcount: A:0.13, C:0.11, G:0.02, T:0.74
Consensus pattern (14 bp):
TTTTTCATTTTTCA
Found at i:24725188 original size:14 final size:13
Alignment explanation
Indices: 24725146--24725184 Score: 60
Period size: 13 Copynumber: 2.8 Consensus size: 13
24725136 TTTTTTTTAT
24725146 TTTTCAGTTTTTCA
1 TTTTCA-TTTTTCA
24725160 TTTTTCATTTTTCA
1 -TTTTCATTTTTCA
24725174 TTTTCATTTTT
1 TTTTCATTTTT
24725185 TCATATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 11 0.46
14 7 0.29
15 6 0.25
ACGTcount: A:0.13, C:0.13, G:0.03, T:0.72
Consensus pattern (13 bp):
TTTTCATTTTTCA
Found at i:24725193 original size:8 final size:7
Alignment explanation
Indices: 24725138--24725184 Score: 69
Period size: 7 Copynumber: 6.7 Consensus size: 7
24725128 CATTTTTATT
*
24725138 TTTTTTA
1 TTTTTCA
24725145 TTTTTCA
1 TTTTTCA
24725152 GTTTTTCA
1 -TTTTTCA
24725160 TTTTTCA
1 TTTTTCA
24725167 TTTTTCA
1 TTTTTCA
24725174 -TTTTCA
1 TTTTTCA
24725180 TTTTT
1 TTTTT
24725185 TCATATTTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
6 6 0.16
7 24 0.65
8 7 0.19
ACGTcount: A:0.13, C:0.11, G:0.02, T:0.74
Consensus pattern (7 bp):
TTTTTCA
Found at i:24725709 original size:16 final size:17
Alignment explanation
Indices: 24725684--24725731 Score: 57
Period size: 16 Copynumber: 3.0 Consensus size: 17
24725674 CCCAGGTAGA
24725684 TGTT-TTTTTGTTTCTT
1 TGTTATTTTTGTTTCTT
24725700 T-TTATTTTTGTTT-TT
1 TGTTATTTTTGTTTCTT
* *
24725715 TGTTCTTTTTTTTTCTT
1 TGTTATTTTTGTTTCTT
24725732 CTTCTTTTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 5 0.19
16 20 0.74
17 2 0.07
ACGTcount: A:0.02, C:0.06, G:0.08, T:0.83
Consensus pattern (17 bp):
TGTTATTTTTGTTTCTT
Found at i:24725717 original size:23 final size:21
Alignment explanation
Indices: 24725687--24725728 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 21
24725677 AGGTAGATGT
24725687 TTTTTTGTTTCTTTTTATTTTTG
1 TTTTTTG-TTCTTTTT-TTTTTG
24725710 TTTTTTGTTCTTTTTTTTT
1 TTTTTTGTTCTTTTTTTTT
24725729 CTTCTTCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 4 0.21
22 8 0.42
23 7 0.37
ACGTcount: A:0.02, C:0.05, G:0.07, T:0.86
Consensus pattern (21 bp):
TTTTTTGTTCTTTTTTTTTTG
Found at i:24725736 original size:16 final size:15
Alignment explanation
Indices: 24725704--24725757 Score: 56
Period size: 16 Copynumber: 3.5 Consensus size: 15
24725694 TTTCTTTTTA
*
24725704 TTTTTGTTTTTTGTTC
1 TTTTT-TTTTTTCTTC
24725720 TTTTTTTTTCTTCTTC
1 TTTTTTTTT-TTCTTC
*
24725736 TTTTCTTTTTTTC-CC
1 TTTT-TTTTTTTCTTC
24725751 TTTTTTT
1 TTTTTTT
24725758 GTATTGAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
14 3 0.09
15 9 0.26
16 17 0.50
17 5 0.15
ACGTcount: A:0.00, C:0.15, G:0.04, T:0.81
Consensus pattern (15 bp):
TTTTTTTTTTTCTTC
Found at i:24729942 original size:20 final size:20
Alignment explanation
Indices: 24729901--24729946 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
24729891 TAAATATTAT
**
24729901 TATAAAAATATATGAATGTA
1 TATAAAAATATATGAAACTA
24729921 TATAAAACATATAT-AAACTA
1 TATAAAA-ATATATGAAACTA
24729941 TA-AAAA
1 TATAAAA
24729947 TAAAATGATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 4 0.17
20 13 0.57
21 6 0.26
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.30
Consensus pattern (20 bp):
TATAAAAATATATGAAACTA
Done.