Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 86 of 196
Found at i:24737749 original size:61 final size:61
Alignment explanation
Indices: 24737652--24737774 Score: 185
Period size: 61 Copynumber: 2.0 Consensus size: 61
24737642 TTAACAACTT
* *
24737652 ACTTAATTTCACGATCGGACAATCTAAATGATTCGAATCAACAATGAACCGAGTTCGTATC
1 ACTTAATTTCACGATCGGACAATCTAAACGACTCGAATCAACAATGAACCGAGTTCGTATC
* * *
24737713 ACTTAATTTCATGATCGGGA-AATCTAAACGACTCGAATCAACACTGAACTGAGTTCGTATC
1 ACTTAATTTCACGATC-GGACAATCTAAACGACTCGAATCAACAATGAACCGAGTTCGTATC
24737774 A
1 A
24737775 TTTGGTATCA
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
61 53 0.95
62 3 0.05
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (61 bp):
ACTTAATTTCACGATCGGACAATCTAAACGACTCGAATCAACAATGAACCGAGTTCGTATC
Found at i:24738367 original size:46 final size:48
Alignment explanation
Indices: 24738280--24738374 Score: 140
Period size: 50 Copynumber: 2.0 Consensus size: 48
24738270 GTTTAGTTAA
* *
24738280 ATTAGTTTAATTAATTAAGTTGTTTTTAAGTTTCTTTAGTTGCTTAAATC
1 ATTAGGTTAATGAATTAAGTTGTTTTTAA--TTCTTTAGTTGCTTAAATC
24738330 ATTAGGTTAATGAATTAAGTTGTTTTTAA-T-TTTAGTTGCTTAAAT
1 ATTAGGTTAATGAATTAAGTTGTTTTTAATTCTTTAGTTGCTTAAAT
24738375 AATTTTGGCA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
46 15 0.35
47 1 0.02
50 27 0.63
ACGTcount: A:0.29, C:0.04, G:0.14, T:0.53
Consensus pattern (48 bp):
ATTAGGTTAATGAATTAAGTTGTTTTTAATTCTTTAGTTGCTTAAATC
Found at i:24738543 original size:20 final size:20
Alignment explanation
Indices: 24738518--24738559 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
24738508 AGCTGTTATA
24738518 AAGTTGAATTAAAGGCCAAC
1 AAGTTGAATTAAAGGCCAAC
24738538 AAGTTGAATTAAAGGCCAAC
1 AAGTTGAATTAAAGGCCAAC
24738558 AA
1 AA
24738560 CTGTTATGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (20 bp):
AAGTTGAATTAAAGGCCAAC
Found at i:24747242 original size:15 final size:14
Alignment explanation
Indices: 24747219--24747264 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 14
24747209 TCTCTCTCGC
*
24747219 TTTCCTTTTCACCTT
1 TTTCATTTTCA-CTT
*
24747234 TTTCATTTTCATTT
1 TTTCATTTTCACTT
24747248 TCTTCATTTTCACTT
1 T-TTCATTTTCACTT
24747263 TT
1 TT
24747265 ATTTTTCTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 4 0.15
15 23 0.85
ACGTcount: A:0.11, C:0.24, G:0.00, T:0.65
Consensus pattern (14 bp):
TTTCATTTTCACTT
Found at i:24752800 original size:560 final size:563
Alignment explanation
Indices: 24750750--24752979 Score: 3693
Period size: 563 Copynumber: 4.0 Consensus size: 563
24750740 GGATTCGGTT
*
24750750 TCTTGATTTTCTTTTTTCCTTCCTTTACGAAACTAAGGTCTTGCTAATAAATTCTTGAATGGTTC
1 TCTTGATTTTCTTTTTTCCTTCCTTTACGAAACTAAGGTCTTGCTAATAAATTCTTGAATAGTTC
24750815 CATTTAGTTTTGAACGCATAAGCCTCCTAACTATTTTCGTAACCCTATTAGGAAATCC-AAAAAA
66 CATTTAGTTTTGAACGCATAAGCCTCCTAACTATTTTCGTAACCCTATTAGGAAATCCAAAAAAA
*
24750879 AAACCTAATTATTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGTCTGAAT
131 AAACCTAATTATTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAAT
* *
24750944 TTTTTTACATAGGACTTAAATAATAAAGTCTAAAAATTAAAACTAGGTATTTAATATTTTACAAA
196 TTTTTTACATAGGAATTAAATAATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAA
** * * *
24751009 TTTTGCCACTTTGACAATTTGATCTGATTTTCCAGTAAGTCTAATTTAAATTTCCTGATTGGACT
261 TTGGGCCACTTTGACAATTTGACCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGACT
*
24751074 TGGAACGTCTTATTGGGCCTTGCCGTCAAGAAGTTGGGCTTGTAATCCGTTTTCTACCAAAATTG
326 TGGAACGTCTTATTGGGCCTTGCCGTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTG
* *
24751139 GTTCGTTGATGCTCGTAACTGAGATCCAATGCGCCTTAGCTGTAAGATTCAGTTTCTTGGACCAA
391 GTTCGTTGATGCTCGTAACTGAGATCCAATGCGCCTTAGCTGCAAGATTCGGTTTCTTGGACCAA
24751204 GATTTCCAAGATTTAAAATCATGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAATGTGA
456 GATTTCCAAGATTTAAAATCATGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAATGTGA
* *
24751269 CCAGGATTCGGTTTCTTGTTTTTCTTGAAAACAAGAAAGTGAA
521 CCAAGATTCGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAA
*
24751312 TCTTGATTTTCTTTTTTCCTTCCTTTACGAAACTAAGGTCTTGCTAATAAATTCTTGAATATTTC
1 TCTTGATTTTCTTTTTTCCTTCCTTTACGAAACTAAGGTCTTGCTAATAAATTCTTGAATAGTTC
24751377 CATTTAGTTTTGAACGCATAAGCCTCCTAACTATTTTCGTAACCCTATTAGGAAATCCAAAAAAA
66 CATTTAGTTTTGAACGCATAAGCCTCCTAACTATTTTCGTAACCCTATTAGGAAATCCAAAAAAA
* *
24751442 AAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGTCTGAAT
131 AAACCTAATTATTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAAT
* *
24751507 TTTTTTACATAGGACTTAAATAATAAAGTCTAAAAATTAAAACTAGGTATTTAATATTTTACAAA
196 TTTTTTACATAGGAATTAAATAATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAA
** * * *
24751572 TTTTGCCACTTTGACAATTTGATCTGATTTTCCAGTAAGTCTAATTTAAATTTCCTGATTGGACT
261 TTGGGCCACTTTGACAATTTGACCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGACT
*
24751637 TGGAACGTCTTATTGGGCCTTGCCGTCAAGAAGTTGGGCTTGTAATCCGTTTTCTACCAAAATTG
326 TGGAACGTCTTATTGGGCCTTGCCGTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTG
*
24751702 GTTCGTTGATGCTCGTAACTGAGATCCAATGCGCCTTAGCTGTAAGATTCGGTTTCTTGGACCAA
391 GTTCGTTGATGCTCGTAACTGAGATCCAATGCGCCTTAGCTGCAAGATTCGGTTTCTTGGACCAA
24751767 GATTTCCAAGATTTAAAATCATGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAATGTGA
456 GATTTCCAAGATTTAAAATCATGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAATGTGA
* *
24751832 CCAGGATTCGGTTTCTTGTTTTTCTTGAAAACAAGAAAGTGAA
521 CCAAGATTCGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAA
24751875 TCTTGATTTTCTTTTTTCCTTCCTTTACGAAACTAAGGTCTTGCTAATAAATTCTTGAATAGTTC
1 TCTTGATTTTCTTTTTTCCTTCCTTTACGAAACTAAGGTCTTGCTAATAAATTCTTGAATAGTTC
24751940 CATTTAGTTTTGAACGCATAAGCCTCCTAACTATTTTCGTAACCCTATTAGGAAATCCAAAAAAA
66 CATTTAGTTTTGAACGCATAAGCCTCCTAACTATTTTCGTAACCCTATTAGGAAATCCAAAAAAA
* * *
24752005 AAACCTAATTAATAATTTCAAGGGGAAATTCGACCAAGGCTTTTAACGGGCTGCTTGGGCTGAAT
131 AAACCTAATTATTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAAT
*
24752070 TTTTTTACATAGGAATTAAATCATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAA
196 TTTTTTACATAGGAATTAAATAATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAA
* * * * *
24752135 TTGGGCCACTTTAACAATTCGGCCTGATTTTCAACTATGTCTAATTTAAATTTCCTGATTGGGCT
261 TTGGGCCACTTTGACAATTTGACCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGACT
* * * *
24752200 TGGAATGTCTTATTGGGCCTTGGCTTCAAGAACCTGGGCTTGTAATCCGTTTTCTACCAAAATTG
326 TGGAACGTCTTATTGGGCCTTGCCGTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTG
* * * * * *
24752265 GTTCGTTGATGCTCGTAATTGAGGTCCAATGCTG-CTTAGCTACAGGATTGGGTTTCTTGGACAA
391 GTTCGTTGATGCTCGTAACTGAGATCCAATGC-GCCTTAGCTGCAAGATTCGGTTTCTTGGACCA
* * *
24752329 AGATTTCCAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACT-A
455 AGATTTCCAAGATTTAAAATCATGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAA-TGT
*
24752393 GAGCAAGATTCGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAA
519 GACCAAGATTCGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAA
* * *
24752438 TCTTGATTTTC-TTTTTCCTTCGTATACGAAACTAAGGTCTTGCTAATAAATTCTTGAATGGTTC
1 TCTTGATTTTCTTTTTTCCTTCCTTTACGAAACTAAGGTCTTGCTAATAAATTCTTGAATAGTTC
* * *
24752502 CATTTAGTTTTGAACGCATAAGCCTCCGAACTATTTTCCTAACCCTATTAGGAAAT-C-TAAAAA
66 CATTTAGTTTTGAACGCATAAGCCTCCTAACTATTTTCGTAACCCTATTAGGAAATCCAAAAAAA
*
24752565 AAACCTAATTATTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTACTTGGGCTGAAT
131 AAACCTAATTATTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAAT
* * *
24752630 TTTTTTACATAGGAATTAAATCATAAAGTCTAAAAATTAAAACTAGGCATTTAAAATTTTACAGA
196 TTTTTTACATAGGAATTAAATAATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAA
* * * * *
24752695 TTGGGACACTTTGACAATTTGGCCTGATTTTCAACTAAGTCAAATTTAAATTTCCTGATGGGGCT
261 TTGGGCCACTTTGACAATTTGACCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGACT
* *
24752760 TGGAACATCTTATTGGGCCTTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTG
326 TGGAACGTCTTATTGGGCCTTGCCGTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTG
* * * *
24752825 ATTCGTTGATGCTCGTAATTGAGATCCAATGCACCTTAGCTGCAAGATTCGGTATCTTGGACCAA
391 GTTCGTTGATGCTCGTAACTGAGATCCAATGCGCCTTAGCTGCAAGATTCGGTTTCTTGGACCAA
** *
24752890 G-TTTCCAAGATTTGGAATCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAAT-TGG
456 GATTTCCAAGATTTAAAATCATGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAATGT-G
*
24752953 GCCAAGATTCGGTTTCTTGATTTTCTT
520 ACCAAGATTCGGTTTCTTGATTTTCTT
24752980 AAAGTCGAAA
Statistics
Matches: 1589, Mismatches: 74, Indels: 13
0.95 0.04 0.01
Matches are distributed among these distances:
558 1 0.00
559 83 0.05
560 306 0.19
561 1 0.00
562 225 0.14
563 971 0.61
564 2 0.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (563 bp):
TCTTGATTTTCTTTTTTCCTTCCTTTACGAAACTAAGGTCTTGCTAATAAATTCTTGAATAGTTC
CATTTAGTTTTGAACGCATAAGCCTCCTAACTATTTTCGTAACCCTATTAGGAAATCCAAAAAAA
AAACCTAATTATTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAAT
TTTTTTACATAGGAATTAAATAATAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAA
TTGGGCCACTTTGACAATTTGACCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGACT
TGGAACGTCTTATTGGGCCTTGCCGTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTG
GTTCGTTGATGCTCGTAACTGAGATCCAATGCGCCTTAGCTGCAAGATTCGGTTTCTTGGACCAA
GATTTCCAAGATTTAAAATCATGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAATGTGA
CCAAGATTCGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAA
Found at i:24760275 original size:562 final size:561
Alignment explanation
Indices: 24752979--24763921 Score: 18555
Period size: 561 Copynumber: 19.4 Consensus size: 561
24752969 TTGATTTTCT
* *
24752979 TAAAGTCGAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTCGGCCACTTTGACAATTTGGC
1 TAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
* *
24753044 CTAATTTTAAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTGC
66 CTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTGC
* * * * *
24753109 TTTCAAGAACTTGCGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGACGC-CCTCAAGTGA
131 CTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGT-AACTGA
* * **
24753173 GATCCAATGCGCCTTAGCTTCAAGATTCGGTTTGTTGGAAAAAGATTTCCAAGATTTGAAATCTT
195 GATCCAATGCGCCTTAGCTGCAAGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTT
** * *
24753238 GATTTTCTTGATTCTACAAATCGCTCAAAACAGCAAAACTGGTCCAAGATTCGATTTCTTGATTT
260 GATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTT
* *
24753303 TCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTATACGCAACTAAGGTCTTGCT
325 TCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTATGGTCTTGCT
* * *
24753368 AATAAATTCTTGAATGGTTCCATTTAGTTTTAAACGCATAAGCCTCCTAACTATTTTCCTAACAC
390 AATAAATTCTTGAATGGTTCCATTTACTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCC
*
24753433 TATTAGGAAATCT-AAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGGTTTTAA
455 TATTAGGAAATCTAAAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAA
*
24753497 TGGGCTGCTTGGGCTGAATTTTTTTTACATTGGAATTAAATCA
520 TGGGCTGCTTGGGCTGAA-TTTTTTTACATAGGAATTAAATCA
*
24753540 TAAAGTGTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
1 TAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
*
24753605 CTGATTTTCAACTAAGTCTTATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTGC
66 CTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTGC
* *
24753670 CTTCAAGAACTTAGGCTTGTATTCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAG
131 CTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAG
* *
24753735 ATCCGATGCGCGTTAGCTGCAAGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTG
196 ATCCAATGCGCCTTAGCTGCAAGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTG
*
24753800 ATTTTCTTGATTCTTGAAATTGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTT
261 ATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTT
* * * *
24753865 TTTGAAATCAAGAAAGTGAATATTGATTTTCTTTTTCCTTCGTTTACGCAACTATGGTCCTGCTA
326 CTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTATGGTCTTGCTA
24753930 ATAAATTCTTGAATGGTTCCATTTACTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCT
391 ATAAATTCTTGAATGGTTCCATTTACTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCT
24753995 ATTAGGAAATCT-AAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAAT
456 ATTAGGAAATCTAAAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAAT
*
24754059 GGGCTGCTTGGGCTGAATTTTTTTTACATTGGAATTAAATCA
521 GGGCTGCTTGGGCTGAA-TTTTTTTACATAGGAATTAAATCA
* *
24754101 TAAAGTGTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTTGGCCACTTTGACAATTTGGC
1 TAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
* *
24754166 CTGATTTTCAACTAAGTCTTATTTAAATTT-CTGATTGGGCTTGAAACGTCTTATTGGGCCTTGC
66 CTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTGC
* *
24754230 CTTCAAGAACTTAGGCTTGTATTCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAG
131 CTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAG
* *
24754295 ATCCAATGCGCCTTAGCTGTAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTG
196 ATCCAATGCGCCTTAGCTGCAAGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTG
*
24754360 ATTTTCTTGATTCTTGAAATTGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTT
261 ATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTT
* * *
24754425 TTTGAAATCAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTATGGTCCTGCTA
326 CTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTATGGTCTTGCTA
24754490 ATAAATTCTTGAATGGTTCCATTTACTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCT
391 ATAAATTCTTGAATGGTTCCATTTACTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCT
*
24754555 ATTAGGAAATCTAAAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGGTTTTAAT
456 ATTAGGAAATCTAAAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAAT
24754620 GGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAAATCA
521 GGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAAATCA
24754661 TAAAGTC-AAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
1 TAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
24754725 CTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTGC
66 CTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTGC
* * * *
24754790 CTTCAAGAACTTGGGCTTGTAATCCGTTTTCCACTAAAATTGGTTCGTTGATGCCCGTAACTGAA
131 CTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAG
* * *
24754855 ATCCAATGCGCCTTAGCTACAAGATTCAGTGTCTTGGACCAAGATTTCCAAGATTTGAAATCTTG
196 ATCCAATGCGCCTTAGCTGCAAGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTG
*
24754920 ATTTTCTTGATTCTTGAACTCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTT
261 ATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTT
* *
24754985 CTTGAAAACAAGCAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTATGGTCCTGCTA
326 CTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTATGGTCTTGCTA
* *
24755050 ATAAATTCTTGAATGGTTCTATTTCCTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCT
391 ATAAATTCTTGAATGGTTCCATTTACTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCT
24755115 ATTAGGAAATCT-AAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAAT
456 ATTAGGAAATCTAAAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAAT
24755179 GGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAAATCA
521 GGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAAATCA
*
24755220 TAAAGTCAAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
1 TAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
24755285 CTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTGC
66 CTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTGC
*
24755350 CTTCAAGAACTTGGGCTCGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAG
131 CTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAG
*
24755415 ATCCAATGCGCCTTAGCTGCAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTG
196 ATCCAATGCGCCTTAGCTGCAAGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTG
*
24755480 ATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCAGTTTCTTGATTTT
261 ATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTT
* *
24755545 CTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTATGGTCCTGCTC
326 CTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTATGGTCTTGCTA
*
24755610 ATAAATTCTTGAATGGTTCCATTTACTTTTGAAAGCATAAGCCTCCTAACTATTTTCCTAACCCT
391 ATAAATTCTTGAATGGTTCCATTTACTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCT
*
24755675 ATTAGGAAATCTAAAAAAAAAAACCTAATTATTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTA
456 ATTAGGAAATCT--AAAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTA
24755740 ATGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAAATCA
519 ATGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAAATCA
* * * ** * *
24755783 TAAAGTCGAAAAATCAAAACTACGTATTTAATTTTTTTCAAATTCGGCCACTTTGACAATTTGGC
1 TAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
24755848 CTGA-TTTCAAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTG
66 CTGATTTTC-AACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTG
* * * * *
24755912 CCTTCAAGAACATGCGTTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGACGC-CCTCAACTG
130 CCTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGT-AACTG
* * *
24755976 AGATCCAATGCGCCTTAGCTGCAATATTCGGTTTGTTGGACAAAGATTTCCAAGATTTGAAATCT
194 AGATCCAATGCGCCTTAGCTGCAAGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCT
24756041 TGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATT
259 TGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATT
* *
24756106 TTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTATACGCAACTAAGGTCTTGC
324 TTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTATGGTCTTGC
*
24756171 TAATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACC
389 TAATAAATTCTTGAATGGTTCCATTTACTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACC
24756236 CTATTAGGAAATCT-AAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTA
454 CTATTAGGAAATCTAAAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTA
*
24756300 ATGGGCTGCTTGGGCTGAATTTTTTTACATTGGAATTAAATCA
519 ATGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAAATCA
*
24756343 TAAAGTGTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
1 TAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
*
24756408 CTGATTTTCAACTAAGTCTTATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTGC
66 CTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTGC
* *
24756473 CTTCAAGAACTTAGGCTTGTATTCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAG
131 CTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAG
24756538 ATCCAATGCG-CTTAGCTGCAAGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTG
196 ATCCAATGCGCCTTAGCTGCAAGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTG
*
24756602 ATTTTCTTGATTCTTGAAATTGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTT
261 ATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTT
* * *
24756667 TTTGAAATCAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTATGGTCCTGCTA
326 CTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTATGGTCTTGCTA
24756732 ATAAATTCTTGAATGGTTCCATTTACTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCT
391 ATAAATTCTTGAATGGTTCCATTTACTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCT
24756797 ATTAGGAAATCT-AAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGG-TTTTAAT
456 ATTAGGAAATCTAAAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAAT
*
24756860 GGGCTGCTTGGGCTGAATTTTTTTTACATTGGAATTAAATCA
521 GGGCTGCTTGGGCTGAA-TTTTTTTACATAGGAATTAAATCA
* *
24756902 TAAAGTGTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTTGGCCACTTTGACAATTTGGC
1 TAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
*
24756967 CTGATTTTCAACTAAGTCTTATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTGC
66 CTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTGC
* *
24757032 CTTCAAGAACTTAGGCTTGTATTCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAG
131 CTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAG
* *
24757097 ATCCAATGCGCCTTAGCTGTAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTG
196 ATCCAATGCGCCTTAGCTGCAAGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTG
*
24757162 ATTTTCTTGATTCTTGAAATTGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTT
261 ATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTT
* * *
24757227 TTTGAAATCAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTATGGTCCTGCTA
326 CTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTATGGTCTTGCTA
24757292 ATAAATTCTTGAATGGTTCCATTTACTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCT
391 ATAAATTCTTGAATGGTTCCATTTACTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCT
24757357 ATTAGGAAATCTAAAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAAT
456 ATTAGGAAATCTAAAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAAT
24757422 GGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAAATCA
521 GGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAAATCA
*
24757463 TAAAGTCCAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
1 TAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
24757528 CTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTGC
66 CTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTGC
* * * *
24757593 CTTCAAGAACTTGGGCTTGTAATCCGTTTTCCACTAAAATTGGTTCGTTGATGCCCGTAACTGAA
131 CTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAG
* *
24757658 ATCCAATGCGCCTTAGCTACAAGATTCAGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTG
196 ATCCAATGCGCCTTAGCTGCAAGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTG
*
24757723 ATTTTCTTGATTCTTGAACTCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTT
261 ATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTT
* *
24757788 CTTGAAAACAAGCAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTATGGTCCTGCTA
326 CTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTATGGTCTTGCTA
24757853 ATAAATTCTTGAATGGTTCCATTTACTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCT
391 ATAAATTCTTGAATGGTTCCATTTACTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCT
24757918 ATTAGGAAATCT-AAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAAT
456 ATTAGGAAATCTAAAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAAT
24757982 GGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAAATCA
521 GGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAAATCA
24758023 TAAAGTC-AAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
1 TAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
24758087 CTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTGC
66 CTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTGC
* *
24758152 CTTCAAGAACTTGGGCTCGTAATCCGTTTGCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAG
131 CTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAG
* *
24758217 ATCCAATGCGCCTTAGCTGTAGGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTG
196 ATCCAATGCGCCTTAGCTGCAAGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTG
24758282 ATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTT
261 ATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTT
*
24758347 CTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTATGGTCCTGCTA
326 CTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTATGGTCTTGCTA
24758412 ATAAATTCTTGAATGGTTCCATTTACTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCT
391 ATAAATTCTTGAATGGTTCCATTTACTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCT
24758477 ATTAGGAAATCTAAAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAAT
456 ATTAGGAAATCTAAAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAAT
24758542 GGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAAATCA
521 GGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAAATCA
*
24758583 TAAAGTCAAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
1 TAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
* *
24758648 CTGATTTTCAACTAAGTCTAATTTAAATTTCCTAATTGGGCTTGGAAAGTCTTATTGGGCCTTGC
66 CTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTGC
* *
24758713 CTTCAAGAACTTGGGCTTGTAATCCATTTTCTACCAAATTTGGTTCGTTGATGCTCGTAACTGAG
131 CTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAG
* * *
24758778 ATCCAATGCGCCTTAGCTGCAAGATTCGATTTCTTAGACTAAGATTTCCAAGATTTGAAATCTTG
196 ATCCAATGCGCCTTAGCTGCAAGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTG
*
24758843 ATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAATTGGACCAAGATTCGGTTTCTTGATTTT
261 ATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTT
* * * * *
24758908 CTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTATACGGAAATAAGGTATTGCTA
326 CTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTATGGTCTTGCTA
*
24758973 ATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCT
391 ATAAATTCTTGAATGGTTCCATTTACTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCT
24759038 ATTAGGAAATCTAAAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAAT
456 ATTAGGAAATCTAAAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAAT
* * *
24759103 GGGTTGCTTGGCCTGAATTTTTTTACATAAGAATTAAATCA
521 GGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAAATCA
** *
24759144 TAAAGTCTTAAAAATTAAAACTAAGGTATTTAAGGTTATACAAATTGGGCCACTTTGACAATTTG
1 TAAAGTC-TAAAAATTAAAACT-AGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTG
* *
24759209 GCCTGATTTTCAACTAAGTTTAATTTAAATTTCCTGATTGGGCTGGGAACGTCTTATTGGGCCTT
64 GCCTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTT
* *
24759274 GCCTTCAAGAACTTGGCGCTTGTAATCCGTTTCTATACC-AATTGTGGTTCGTTGATGCTTCGTA
129 GCCTTCAAGAACTTGG-GCTTGTAATCCGTTT-TCTACCAAAAT-TGGTTCGTTGATGC-TCGTA
24759338 ACTGAGATCCAATGCGCCTTAGCTGCAAGATTCGTTCGGTTCTCTTGGACCAAGATTTCCAACAG
190 ACTGAGATCCAATGCGCCTTAGCTGCAAGA----TTCGGTT-TCTTGGACCAAGATTTCC-A-AG
* *
24759403 ATTTGAAATCTTGATTTTCTTGATTCTTGGAAATCGCTTAAAACAGCAAAACTGGGCCAAGATTC
248 ATTTGAAATCTTGATTTTCTTGATTCTT-GAAATCGCTCAAAACAGCAAAACTGGACCAAGATTC
* *
24759468 GGTTTCTTGATTTTTCTTGAAAACAAGAAAGTGAATTTTGATTTTCTTTTTCCTTCGTTTATGCA
312 GGTTTCTTGA-TTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCA
* * *
24759533 ACTAAGGTCTTGCTAATAAATTCTTGAATGGTTCCATTTAC-TTTGAATGTATAAGCCTCCTAAC
376 ACTATGGTCTTGCTAATAAATTCTTGAATGGTTCCATTTACTTTTGAACGCATAAGCCTCCTAAC
* **
24759597 TATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAACCTAATTATTAATTTCAAGGGGAAATTTA
441 TATTTTCCTAACCCTATTAGGAAATCTAAAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCG
* * * *
24759662 GCCAAGGCTTTTAATGGGCTGCTTGGGCGGAGTTTTTTTACATTGGAATTAAATAA
506 GCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAAATCA
*
24759718 TAAAGTCTAAAACTTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
1 TAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
**
24759783 CTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAAAATCTTATTGGGCCTTGC
66 CTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTGC
* * *
24759848 CTTCAAGAACTTAGGCTTGTAATCCATTTTCTACCAAATTTGGTTCGTTGATGCTCGTAACTGAG
131 CTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAG
* * * *
24759913 ATCCAATACGCCTTAGCTGCAAGATTCGGTTTCTTAGACTAAGATTACCAAGATTTGAAATCTTG
196 ATCCAATGCGCCTTAGCTGCAAGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTG
24759978 ATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTT
261 ATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTT
* * *
24760043 CTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGATTATG-AAATAATGGTCTTGCT
326 CTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACT-ATGGTCTTGCT
24760107 AATAAATTCTTGAATGGTTCCATTTACTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCC
390 AATAAATTCTTGAATGGTTCCATTTACTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCC
24760172 TATTAGGAAATCTAAAAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTA
455 TATTAGGAAATCT-AAAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTA
*
24760237 ATGGGCTGCTTGGGCTGAATTTTTTTACATAAGAATTAAATCA
519 ATGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAAATCA
** * *
24760280 TAAAGTCTAAAAATTAAAACTAGGTATTTAAAGGTTAACAAATTGTGCCACTTTGACAATTTGGC
1 TAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
*
24760345 CTGATTTTCAACTAAGTCTAATTTAAAATTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTGC
66 CTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTGC
24760410 CTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAG
131 CTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAG
* *
24760475 ATCCAATGCACCTTAGCTGCAAGATTTGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTG
196 ATCCAATGCGCCTTAGCTGCAAGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTG
* * *
24760540 ATTTTCTTGATTCTTGAAATCGCTTAAAACAACAAAACTGGGCCAAGATTCGGTTTCTTGATTTT
261 ATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTT
* *
24760605 CTTGAAAACAAGAAAGTGAATTTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTCTTGCTA
326 CTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTATGGTCTTGCTA
*
24760670 ATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCT
391 ATAAATTCTTGAATGGTTCCATTTACTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCT
* * *
24760735 ATTAGGAAATATAAAAGAAAAACCTAATTATTAATTTCAAGGGGAAATTTGGCCAAGGCTTTTAA
456 ATTAGGAAATCTAAAA-AAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAA
* * *
24760800 TGGGCTGCTTGGGCTGAGTTTTTTTACATTGGAAGTAAATCA
520 TGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAAATCA
* *
24760842 TAAAGTCTAAAACTTAAAACTAGGCATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
1 TAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
**
24760907 CTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAAAATCTTATTGGGCCTTGC
66 CTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTGC
* *
24760972 CTTCAAGAACTTGGGCTTGTAATCCATTTTCTACCAAATTTGGTTCGTTGATGCTCGTAACTGAG
131 CTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAG
* * * *
24761037 ATCCAATGCGCCTGAGCTGCAAGATTCGGTTTCTTAGACTAAGATTTTCAAGATTTGAAATCTTG
196 ATCCAATGCGCCTTAGCTGCAAGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTG
*
24761102 ATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGATTTCTTGATTTT
261 ATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTT
24761167 CTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTATGGTCTTGCTA
326 CTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTATGGTCTTGCTA
24761232 ATAAATTCTTGAATGGTTCCATTTACTTTTGAACGCATAAGCCTCCTAACTATTTTCCT-ACTCC
391 ATAAATTCTTGAATGGTTCCATTTACTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAAC-CC
24761296 TATTAGGAAATCTAAAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAA
455 TATTAGGAAATCTAAAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAA
24761361 TGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAAATCA
520 TGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAAATCA
** *
24761403 TAAAGTCTAAAAATTAAAACTAGGTATTTAAAGGTTAACAAATTGGGCCACTTTGACAATTTGGC
1 TAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
*
24761468 CTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTGGGAACGTCTTATTGGGCCTTGC
66 CTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTGC
24761533 CTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAG
131 CTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAG
* *
24761598 ATCCAATGCGCCTTAGCTGCACGATTCGGTTTCTTGGACCAAGATTTCCAACATTTGAAATCTTG
196 ATCCAATGCGCCTTAGCTGCAAGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTG
* * * * *
24761663 ATTTTCTTGATTCTTGAAATCGTTTAAAACAACAAAACTGGGCCAAGATTTGGTTTCTTGATTTT
261 ATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTT
* * * *
24761728 CTTGAAAACAAGAAAGTGAATTTTGATTTTCTTTTTCCTTCGTTTATGCAACTAAGGTCTTGTTA
326 CTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTATGGTCTTGCTA
* *
24761793 ATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGTATAAGCCTCCTAACTATTTTCCTAACCCT
391 ATAAATTCTTGAATGGTTCCATTTACTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCT
*
24761858 ATTAGGAAATCTAAAAAAAAACCTAATTATTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAAT
456 ATTAGGAAATCTAAAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAAT
* * *
24761923 GGGCTGCTTGGGCTGAGTTTTTTTACATTGGAATTAAATAA
521 GGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAAATCA
*
24761964 TAAAGTCTAAAACTTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
1 TAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
* **
24762029 CTGATTTTGAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAAAATCTTATTGGGCCTTGC
66 CTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTGC
* * * *
24762094 CTTCAAGAACTTAGGCTTGTAATCCATTTTCTACCAAATTTTGTTCGTTGATGCTCGTAACTGAG
131 CTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAG
* * * *
24762159 ATCCAATGCGCCTTAGCTGCAAGATTCGGTTTCTTAGACTAAAATTACCAAGATTTGAAATCTTG
196 ATCCAATGCGCCTTAGCTGCAAGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTG
*
24762224 ATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAATTGGACCAAGATTCGGTTTCTTGATTTT
261 ATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTT
* * * *
24762289 CTTGAAAACAAGAAAGTGAATCTTTG-TTTTCTTTTTCCTTCGTATACGGAAATAAGGTCTTGCT
326 CTTGAAAACAAGAAAGTGAATC-TTGATTTTCTTTTTCCTTCGTTTACGCAACTATGGTCTTGCT
*
24762353 AATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCC
390 AATAAATTCTTGAATGGTTCCATTTACTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCC
24762418 TATTAGGAAATCTAAAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAA
455 TATTAGGAAATCTAAAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAA
* * *
24762483 TGGGTTGCTTGGCCTGAATTTTTTTACATAAGAATTAAATCA
520 TGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAAATCA
** * *
24762525 TAAAGTCTAAAAATTAAAACTAGGTATTTAAAGGTTAACAAATTGTGCCACTTTGACAATTTGGC
1 TAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
*
24762590 CTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTGGGAACGTCTTATTGGGCCTTGC
66 CTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTGC
24762655 CTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAG
131 CTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAG
*
24762720 ATCCAATGCGCCTTAGCTGCAAGATTCGGTTTCTTGGACCAAGATTTCCATGATTTGAAATCTTG
196 ATCCAATGCGCCTTAGCTGCAAGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTG
* ** *
24762785 ATTTTCTTGATTCTTGAAATCGCTTAAAACAATAAAACTGGGCCAAGATTCGGTTTCTTGATTTT
261 ATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTT
* *
24762850 CTTGAAAACAAGAAAGTGAATTTTGATTTTCTTTTTCCTTCGTTTACGCAACTAAGGTCTTGCTA
326 CTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTATGGTCTTGCTA
*
24762915 ATAAATTCTTGAATGGTTCCATTTAGTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCT
391 ATAAATTCTTGAATGGTTCCATTTACTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCT
* * *
24762980 ATTAGGAAATATAAAAGAAAAACCTAATTATTAATTTCAAGGGGAAATTTGGCCAAGGCTTTTAA
456 ATTAGGAAATCTAAAA-AAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAA
* * *
24763045 TGGGCTGCTTGGGCTG-AGTTTTTTACATTGGAAGTAAATCA
520 TGGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAAATCA
* *
24763086 TAAAGTCTAAAACTTAAAACTAGGCATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
1 TAAAGTCTAAAAATTAAAACTAGG----T---A-TTTA-AAA-T-------TTT-ACAAATTGG-
24763151 CTGATTTTCAACTAAGTCTAATTGACAATTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTC
47 --G-----C--C--A--CT--TTGACAATTTGGCCTGATTTTCAACTAAGTCTAATTTAAATTTC
** * *
24763216 CTGATTGGGCTTGGAAAATCTTATTGGGCCTTGCCTTCAAGAACTTAGGCTTGTAATCCATTTTC
97 CTGATTGGGCTTGGAACGTCTTATTGGGCCTTGCCTTCAAGAACTTGGGCTTGTAATCCGTTTTC
* * * *
24763281 TACCAAATTTGGTTCGTTGATGCTCGTAACTGAGATCTAATGTGCCTGAGCTGCAAGATTCGGTT
162 TACCAAAATTGGTTCGTTGATGCTCGTAACTGAGATCCAATGCGCCTTAGCTGCAAGATTCGGTT
* * *
24763346 TCTTAGACTAAGATTTCCAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCTCTCAAAACA
227 TCTTGGACCAAGATTTCCAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACA
*
24763411 GCAAAACTGGACCAAGATTCGATTTCTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTC
292 GCAAAACTGGACCAAGATTCGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTC
24763476 TTTTTCCTTCGTTTACGCAACTATGGTCTTGCTAATAAATTCTTGAATGGTTCCATTTACTTTTG
357 TTTTTCCTTCGTTTACGCAACTATGGTCTTGCTAATAAATTCTTGAATGGTTCCATTTACTTTTG
* *
24763541 AACGCATGAGCCTCCTAACTATTTTCCT-ACTCCTACTAGGAAATCTAAAAAAAAACCTAATTAC
422 AACGCATAAGCCTCCTAACTATTTTCCTAAC-CCTATTAGGAAATCTAAAAAAAAACCTAATTAC
*
24763605 TAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAA-CGGCTGCTTGGGCTGAATTTTTTTACATAG
486 TAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAATGGGCTGCTTGGGCTGAATTTTTTTACATAG
24763669 GAATTAAATCA
551 GAATTAAATCA
*
24763680 TAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTAACAATTTGGC
1 TAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
24763745 CTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTGC
66 CTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTGC
* * *
24763810 CTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTTGTTCGTTAATGCTCGTAATTGAG
131 CTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAG
*
24763875 ATCCAATGCGCCTTAGCTACAAGATTCGGTTTCTTGGACCAAGATTT
196 ATCCAATGCGCCTTAGCTGCAAGATTCGGTTTCTTGGACCAAGATTT
24763922 GGTTTCTTGA
Statistics
Matches: 9823, Mismatches: 480, Indels: 159
0.94 0.05 0.02
Matches are distributed among these distances:
558 24 0.00
559 1157 0.12
560 2185 0.22
561 3456 0.35
562 1191 0.12
563 647 0.07
564 34 0.00
565 27 0.00
566 36 0.00
568 2 0.00
569 38 0.00
570 27 0.00
571 34 0.00
572 116 0.01
573 44 0.00
574 182 0.02
575 88 0.01
576 8 0.00
577 3 0.00
578 2 0.00
579 7 0.00
582 1 0.00
584 1 0.00
585 3 0.00
586 4 0.00
587 2 0.00
589 1 0.00
590 1 0.00
591 1 0.00
593 16 0.00
594 93 0.01
595 392 0.04
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.36
Consensus pattern (561 bp):
TAAAGTCTAAAAATTAAAACTAGGTATTTAAAATTTTACAAATTGGGCCACTTTGACAATTTGGC
CTGATTTTCAACTAAGTCTAATTTAAATTTCCTGATTGGGCTTGGAACGTCTTATTGGGCCTTGC
CTTCAAGAACTTGGGCTTGTAATCCGTTTTCTACCAAAATTGGTTCGTTGATGCTCGTAACTGAG
ATCCAATGCGCCTTAGCTGCAAGATTCGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTG
ATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAACTGGACCAAGATTCGGTTTCTTGATTTT
CTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCCTTCGTTTACGCAACTATGGTCTTGCTA
ATAAATTCTTGAATGGTTCCATTTACTTTTGAACGCATAAGCCTCCTAACTATTTTCCTAACCCT
ATTAGGAAATCTAAAAAAAAACCTAATTACTAATTTCAAGGGGAAATTCGGCCAAGGCTTTTAAT
GGGCTGCTTGGGCTGAATTTTTTTACATAGGAATTAAATCA
Found at i:24763176 original size:34 final size:34
Alignment explanation
Indices: 24763138--24763207 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
24763128 TTGGGCCACT
24763138 TTGACAATTTGGCCTGATTTTCAACTAAGTCTAA
1 TTGACAATTTGGCCTGATTTTCAACTAAGTCTAA
24763172 TTGACAATTTGGCCTGATTTTCAACTAAGTCTAA
1 TTGACAATTTGGCCTGATTTTCAACTAAGTCTAA
24763206 TT
1 TT
24763208 TAAATTTCCT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (34 bp):
TTGACAATTTGGCCTGATTTTCAACTAAGTCTAA
Found at i:24771184 original size:28 final size:29
Alignment explanation
Indices: 24771122--24771188 Score: 84
Period size: 28 Copynumber: 2.3 Consensus size: 29
24771112 TAATCAACCA
24771122 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
24771151 CACACA-TTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
24771179 CGCACACTTA
1 CGCACACTTA
24771189 CCTTTTTCCG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
27 3 0.09
28 21 0.66
29 8 0.25
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:24771302 original size:173 final size:173
Alignment explanation
Indices: 24771012--24771337 Score: 521
Period size: 173 Copynumber: 1.9 Consensus size: 173
24771002 AACTCAAGGT
* *
24771012 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
24771077 GAAAATATATACTGGGTTGCACACATAATGTTTAGTAATCAACCACGCACACTTAGTGCCATGCA
66 GAAAATATATACTGGGTTGCACACATAATGCTTAATAATCAACCACGCACACTTAGTGCCATGCA
24771142 CTTTAAACTCACACA-TTAGTGCCATGCATTTCAAGTTCGCAC
131 CTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
24771184 ACTTACCTTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTAT
1 ACTTACC-TTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTAT
* * **
24771249 AG-AAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGTGCACACTTAGTGCCATG
65 AGAAAATATATACTGGGTT-GCACACATAATGCTTAATAATCAACCACGCACACTTAGTGCCATG
* * *
24771313 TACTTTCAACTCGCACACTTAGTGC
129 CACTTTAAACTCACACACTTAGTGC
24771338 TGTACAATTT
Statistics
Matches: 140, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
172 22 0.16
173 111 0.79
174 7 0.05
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (173 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATACTGGGTTGCACACATAATGCTTAATAATCAACCACGCACACTTAGTGCCATGCA
CTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:24771330 original size:29 final size:30
Alignment explanation
Indices: 24771296--24771368 Score: 98
Period size: 29 Copynumber: 2.5 Consensus size: 30
24771286 AATCAACCGT
* *
24771296 GCACACTTAGTGCCATGTAC-TTTCAACTC
1 GCACACTTAGTGCCATGTACATTTAAACCC
24771325 GCACACTTAGTG-C-TGTACAATTTAAACCC
1 GCACACTTAGTGCCATGTAC-ATTTAAACCC
24771354 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
24771369 ATCTCATGAC
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.13
28 1 0.03
29 31 0.82
30 1 0.03
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.27
Consensus pattern (30 bp):
GCACACTTAGTGCCATGTACATTTAAACCC
Found at i:24775587 original size:40 final size:40
Alignment explanation
Indices: 24775440--24775662 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
24775430 TTGAATGCTG
* * * *
24775440 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
** *
24775480 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
*
24775519 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
24775558 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
24775598 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
24775637 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
24775663 AACGAGGAGC
Statistics
Matches: 157, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
38 22 0.14
39 56 0.36
40 68 0.43
41 10 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:24775624 original size:79 final size:78
Alignment explanation
Indices: 24775440--24775660 Score: 241
Period size: 79 Copynumber: 2.8 Consensus size: 78
24775430 TTGAATGCTG
* * * * *
24775440 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGA-T-ACTAAATCCGGGCTAAG-TCCCGAAGGCAT
* *
24775503 TTGTGCGAGATACAAT
63 TCGTGCGAGATACAAA
*
24775519 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGG-CTTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTC
* *
24775583 GTGCGAGTTATTAAA
65 GTGCGAGATA-CAAA
* * * * *
24775598 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATT
24775661 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 41 0.34
79 70 0.58
80 9 0.07
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACAAA
Found at i:24775680 original size:79 final size:80
Alignment explanation
Indices: 24775519--24775695 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
24775509 GAGATACAAT
* * *
24775519 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
24775583 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
24775598 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
24775662 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
24775677 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
24775696 TACGTGATTT
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
78 16 0.19
79 59 0.71
80 8 0.10
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:24783527 original size:40 final size:39
Alignment explanation
Indices: 24783358--24783580 Score: 220
Period size: 39 Copynumber: 5.7 Consensus size: 39
24783348 TTGAATGCTG
* * *
24783358 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-TATAAA
* * * *
24783398 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACAAGT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTATAA-A
* * *
24783438 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATATAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATAAA
* *
24783476 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-TAAA
* *
24783516 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-TAAA
* *
24783555 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
24783581 AACGAGGAGC
Statistics
Matches: 155, Mismatches: 21, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
38 11 0.07
39 78 0.50
40 58 0.37
41 8 0.05
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATAAA
Found at i:24783598 original size:79 final size:79
Alignment explanation
Indices: 24783438--24783613 Score: 189
Period size: 79 Copynumber: 2.3 Consensus size: 79
24783428 AGATACAAGT
* * *
24783438 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATATAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATATAAAACCGGGCTAAGTCCCGAAGGCATTCG
** * *
24783502 TGCGAGTTATTAAA
66 AACGAGTGACTAAA
* * * *
24783516 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATA-TAAAACCGGGCTAAGTCCCGAAGGCATTC
*
24783580 GAACGAG-GAGCTATA
65 GAACGAGTGA-CTAAA
*
24783595 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
24783614 TACGTGATTT
Statistics
Matches: 82, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
78 38 0.46
79 44 0.54
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATATAAAACCGGGCTAAGTCCCGAAGGCATTCG
AACGAGTGACTAAA
Found at i:24797125 original size:61 final size:58
Alignment explanation
Indices: 24797018--24797129 Score: 143
Period size: 61 Copynumber: 1.9 Consensus size: 58
24797008 ATCACTTTAA
* * *
24797018 TATTAAATTAATATAATACTTATTCAGATAAATATTAGATGAAATTTAATATTAAATC
1 TATTAAATTAATAGAATACTTATTAAGATAAATATTAAATGAAATTTAATATTAAATC
* **
24797076 TATTAAATTAATAGAATATTTATCTATAAGATAAATATTAAATTTAATTTAATA
1 TATTAAATTAATAGAATACTTA--T-TAAGATAAATATTAAATGAAATTTAATA
24797130 CTAAGAGATT
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
58 20 0.44
60 1 0.02
61 24 0.53
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (58 bp):
TATTAAATTAATAGAATACTTATTAAGATAAATATTAAATGAAATTTAATATTAAATC
Found at i:24811865 original size:22 final size:21
Alignment explanation
Indices: 24811834--24811875 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
24811824 TATTATGCAT
24811834 TATTAAACAGAAAACACTAAAG
1 TATTAAACAGAAAACA-TAAAG
*
24811856 TATTATACAGAAAACATAAA
1 TATTAAACAGAAAACATAAA
24811876 TGTGCTAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.60, C:0.12, G:0.07, T:0.21
Consensus pattern (21 bp):
TATTAAACAGAAAACATAAAG
Found at i:24812621 original size:20 final size:20
Alignment explanation
Indices: 24812596--24812638 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
24812586 AATTTAACTT
*
24812596 CTTCTTTTCTTACTCT-CTTA
1 CTTCTTTACTTACT-TGCTTA
24812616 CTTCTTTACTTACTTGCTTA
1 CTTCTTTACTTACTTGCTTA
24812636 CTT
1 CTT
24812639 AAATAACTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 1 0.05
20 20 0.95
ACGTcount: A:0.12, C:0.28, G:0.02, T:0.58
Consensus pattern (20 bp):
CTTCTTTACTTACTTGCTTA
Found at i:24812966 original size:50 final size:50
Alignment explanation
Indices: 24812891--24813122 Score: 365
Period size: 50 Copynumber: 4.6 Consensus size: 50
24812881 TCTGTACTGT
* * * ** *
24812891 CAATGCCATATCCCAGATATTGTCTTACATGGGAGTTCTCATATCGGTGC
1 CAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
* *
24812941 CCATGCCATGTCCCATACATGGTCTTACATGGGACCTCTCATCTCGGTGC
1 CAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
*
24812991 CAATGTCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
1 CAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
*
24813041 CAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
1 CAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
*
24813091 CAACGCCATGTCCCAGACATGGTCTTACATGG
1 CAATGCCATGTCCCAGACATGGTCTTACATGG
24813123 CTCACATATT
Statistics
Matches: 169, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 169 1.00
ACGTcount: A:0.21, C:0.31, G:0.21, T:0.27
Consensus pattern (50 bp):
CAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC
Found at i:24813592 original size:18 final size:18
Alignment explanation
Indices: 24813569--24813605 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
24813559 TTTCTATTCA
*
24813569 TACCTTTTTAAATTTTGT
1 TACCTTTCTAAATTTTGT
*
24813587 TACCTTTCTATATTTTGT
1 TACCTTTCTAAATTTTGT
24813605 T
1 T
24813606 TCATCATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.19, C:0.14, G:0.05, T:0.62
Consensus pattern (18 bp):
TACCTTTCTAAATTTTGT
Found at i:24820839 original size:45 final size:45
Alignment explanation
Indices: 24820784--24820971 Score: 304
Period size: 45 Copynumber: 4.2 Consensus size: 45
24820774 CATGAAATTA
* *
24820784 AGGAAGCATTTGACCAACATCATGCATAATTAATGGATGAATTTG
1 AGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAATTTG
24820829 AGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAATTTG
1 AGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAATTTG
* *
24820874 AGGAAGCATCTGACCAACATCATGCATAATTCATGGAAGAATTTA
1 AGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAATTTG
* * * *
24820919 AGGAAGCATTTGGCCAACATCATGCATAATTTATGGAACAAATTG
1 AGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAATTTG
24820964 AGGAAGCA
1 AGGAAGCA
24820972 CCATGGCCGA
Statistics
Matches: 133, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 133 1.00
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.26
Consensus pattern (45 bp):
AGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAATTTG
Found at i:24821748 original size:19 final size:18
Alignment explanation
Indices: 24821724--24821769 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
24821714 ATTCGGTATT
24821724 AAAAAAAAGAGAAATTCAA
1 AAAAAAAAGAGAAATT-AA
***
24821743 AAAAAAATTTGAAATTAA
1 AAAAAAAAGAGAAATTAA
24821761 AAAAAAAAG
1 AAAAAAAAG
24821770 TGATTGAAAT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
18 9 0.41
19 13 0.59
ACGTcount: A:0.74, C:0.02, G:0.09, T:0.15
Consensus pattern (18 bp):
AAAAAAAAGAGAAATTAA
Found at i:24827162 original size:45 final size:45
Alignment explanation
Indices: 24827098--24827240 Score: 232
Period size: 45 Copynumber: 3.2 Consensus size: 45
24827088 CATGAAATTA
24827098 AGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAATTTG
1 AGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAATTTG
* *
24827143 AGGAAGCATTTGACCAACATCATGCATAATTCATGAAAGAATTTA
1 AGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAATTTG
* * * *
24827188 AGGAAGCATTTGGCCAACATCATGCATAATTTATGGAACAAATTG
1 AGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAATTTG
24827233 AGGAAGCA
1 AGGAAGCA
24827241 CCATGGCCGA
Statistics
Matches: 90, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 90 1.00
ACGTcount: A:0.40, C:0.15, G:0.20, T:0.25
Consensus pattern (45 bp):
AGGAAGCATTTGACCAACATCATGCATAATTCATGGAAGAATTTG
Found at i:24830445 original size:21 final size:22
Alignment explanation
Indices: 24830421--24830466 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
24830411 TTAAAAACAA
24830421 ATTAAACACTT-AACTAAATTT
1 ATTAAACACTTAAACTAAATTT
* *
24830442 ATTAAATACTTAAACTAATTTT
1 ATTAAACACTTAAACTAAATTT
24830464 ATT
1 ATT
24830467 CCAGCAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (22 bp):
ATTAAACACTTAAACTAAATTT
Found at i:24834424 original size:18 final size:18
Alignment explanation
Indices: 24834401--24834439 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
24834391 ATCTTTTCTT
24834401 TTTCAATTT-TTTTCTCAA
1 TTTCAATTTATTTT-TCAA
24834419 TTTCAATTTATTTTTCAA
1 TTTCAATTTATTTTTCAA
24834437 TTT
1 TTT
24834440 TTTTTCTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.23, C:0.13, G:0.00, T:0.64
Consensus pattern (18 bp):
TTTCAATTTATTTTTCAA
Found at i:24834498 original size:29 final size:29
Alignment explanation
Indices: 24834466--24834523 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
24834456 TTTCTCTCAC
*
24834466 TTTTTCGATTTCTTTTTCTTTTGCAATTT
1 TTTTTCGATTTCGTTTTCTTTTGCAATTT
** *
24834495 TTTTTCTTTTTCGTTTTCTTTTTCAATTT
1 TTTTTCGATTTCGTTTTCTTTTGCAATTT
24834524 CATTACAATG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.09, C:0.14, G:0.05, T:0.72
Consensus pattern (29 bp):
TTTTTCGATTTCGTTTTCTTTTGCAATTT
Found at i:24835327 original size:14 final size:14
Alignment explanation
Indices: 24835307--24835342 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
24835297 ACTTTCAACT
24835307 CTTTTTTTTGCTCGA
1 CTTTTTTTTGCTC-A
24835322 -TTTTTTTTGCTCA
1 CTTTTTTTTGCTCA
24835335 CTTTTTTT
1 CTTTTTTT
24835343 CGAATTTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 1 0.05
14 19 0.95
ACGTcount: A:0.06, C:0.17, G:0.08, T:0.69
Consensus pattern (14 bp):
CTTTTTTTTGCTCA
Found at i:24845696 original size:24 final size:24
Alignment explanation
Indices: 24845669--24845716 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
24845659 GGCCTGCGAG
*
24845669 AGACCCTCCCACTCCGATGAAGTT
1 AGACCCTCCCACTCAGATGAAGTT
24845693 AGACCCTCCCACTCAGATGAAGTT
1 AGACCCTCCCACTCAGATGAAGTT
24845717 GCCTATGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.27, C:0.35, G:0.17, T:0.21
Consensus pattern (24 bp):
AGACCCTCCCACTCAGATGAAGTT
Found at i:24854799 original size:39 final size:39
Alignment explanation
Indices: 24854747--24854917 Score: 202
Period size: 39 Copynumber: 4.3 Consensus size: 39
24854737 GGACTAAGAT
*
24854747 CCGAAGGCATTTGTGCGAGATACAAGTTCCGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAGATACAA-ATCCGGGTTAAGTC
*
24854786 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATCCGGGTTAAGTC
* * *
24854826 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
24854866 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATCCGGGTTAAGTC
24854905 CCGAAGGCATTTG
1 CCGAAGGCATTTG
24854918 AACGAGGAGC
Statistics
Matches: 115, Mismatches: 12, Indels: 9
0.85 0.09 0.07
Matches are distributed among these distances:
39 65 0.57
40 50 0.43
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:24854830 original size:79 final size:79
Alignment explanation
Indices: 24854694--24854917 Score: 222
Period size: 79 Copynumber: 2.8 Consensus size: 79
24854684 TTGAATGCTG
* * * * * * *
24854694 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAAACCGGGCTAAG-TCCCGAAGGCAT
*
24854757 TTGTGCGAGATA-CAAGT
63 TTGTGCGAGATATCAA-A
* * * *
24854774 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTT
* *
24854838 GTGCGAGTTATTAAA
65 GTGCGAGATATCAAA
* * *
24854853 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
24854918 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 11
0.81 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 90 0.74
80 30 0.25
81 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATATCAAA
Found at i:24854935 original size:79 final size:80
Alignment explanation
Indices: 24854774--24854950 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
24854764 AGATACAAGT
* * *
24854774 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
24854838 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
24854853 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
24854917 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
24854932 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
24854951 TACGTGATTT
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
78 16 0.19
79 59 0.71
80 8 0.10
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:24865250 original size:15 final size:15
Alignment explanation
Indices: 24865230--24865260 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
24865220 GGCTTCCGCC
24865230 AAATGTTTTATCTAG
1 AAATGTTTTATCTAG
*
24865245 AAATGTTTTATTTAG
1 AAATGTTTTATCTAG
24865260 A
1 A
24865261 GTAACATTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.03, G:0.13, T:0.48
Consensus pattern (15 bp):
AAATGTTTTATCTAG
Found at i:24872098 original size:24 final size:24
Alignment explanation
Indices: 24872071--24872118 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
24872061 GGCCTGCGAG
*
24872071 AGACCCTCCCACTCCGATGAAGTT
1 AGACCCTCCCACTCAGATGAAGTT
24872095 AGACCCTCCCACTCAGATGAAGTT
1 AGACCCTCCCACTCAGATGAAGTT
24872119 TCCTATGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.27, C:0.35, G:0.17, T:0.21
Consensus pattern (24 bp):
AGACCCTCCCACTCAGATGAAGTT
Found at i:24882837 original size:25 final size:24
Alignment explanation
Indices: 24882761--24882837 Score: 93
Period size: 24 Copynumber: 3.2 Consensus size: 24
24882751 CAGCTTGTAT
* *
24882761 GAGCTTACTAATTTTAGCTCATGA
1 GAGCTTACCAATTTTAGCTCGTGA
*
24882785 GAGCTTACCAAATTTAGCTCGT-A
1 GAGCTTACCAATTTTAGCTCGTGA
*
24882808 TGAGCTTACCGATTTATAGCTCGTGA
1 -GAGCTTACCAATTT-TAGCTCGTGA
24882834 GAGC
1 GAGC
24882838 ATATCGATTC
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
23 1 0.02
24 31 0.69
25 12 0.27
26 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.32
Consensus pattern (24 bp):
GAGCTTACCAATTTTAGCTCGTGA
Found at i:24882845 original size:25 final size:24
Alignment explanation
Indices: 24882799--24882866 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 24
24882789 TTACCAAATT
* *
24882799 TAGCTCGTATGAGCTTACCGATTTA
1 TAGCTCGTA-GAGCATACCGATTCA
*
24882824 TAGCTCGTGAGAGCATATCGATTCA
1 TAGCTCGT-AGAGCATACCGATTCA
*
24882849 TAGCTTGTAAGAGCATAC
1 TAGCTCGT-AGAGCATAC
24882867 ATGTACAGGA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
25 35 0.97
26 1 0.03
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (24 bp):
TAGCTCGTAGAGCATACCGATTCA
Found at i:24885805 original size:27 final size:27
Alignment explanation
Indices: 24885774--24885949 Score: 183
Period size: 27 Copynumber: 6.5 Consensus size: 27
24885764 TAAATTGTAC
*
24885774 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
24885801 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
24885827 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
24885855 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
24885882 AGCACTAAGTGTGCGAGTTTGATTCTGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * * *
24885910 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
24885937 AGCACTGAGTGTG
1 AGCACTAAGTGTG
24885950 TGGACTTAAT
Statistics
Matches: 124, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 101 0.81
28 23 0.19
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:24896499 original size:20 final size:20
Alignment explanation
Indices: 24896471--24896536 Score: 71
Period size: 20 Copynumber: 3.3 Consensus size: 20
24896461 ATTATAATCA
24896471 GTACCCTTGATTGCACTTAC
1 GTACCCTTGATTGCACTTAC
* * **
24896491 GTGCCCTTGTTTGTGCTT-C
1 GTACCCTTGATTGCACTTAC
*
24896510 GATACCCCTGATTGCACTTAC
1 G-TACCCTTGATTGCACTTAC
24896531 GTACCC
1 GTACCC
24896537 CTGTTTATAC
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
19 2 0.06
20 31 0.89
21 2 0.06
ACGTcount: A:0.15, C:0.32, G:0.18, T:0.35
Consensus pattern (20 bp):
GTACCCTTGATTGCACTTAC
Found at i:24896548 original size:20 final size:20
Alignment explanation
Indices: 24896471--24896548 Score: 59
Period size: 20 Copynumber: 3.9 Consensus size: 20
24896461 ATTATAATCA
* * *
24896471 GTACCCTTGATTGCACTTAC
1 GTACCCCTGTTTGTACTTAC
* * *
24896491 GTGCCCTTGTTTGTGCTT-C
1 GTACCCCTGTTTGTACTTAC
* *
24896510 GATACCCCTGATTGCACTTAC
1 G-TACCCCTGTTTGTACTTAC
*
24896531 GTACCCCTGTTTATACTT
1 GTACCCCTGTTTGTACTT
24896549 CGGTAATTTC
Statistics
Matches: 44, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
19 2 0.05
20 40 0.91
21 2 0.05
ACGTcount: A:0.15, C:0.29, G:0.17, T:0.38
Consensus pattern (20 bp):
GTACCCCTGTTTGTACTTAC
Found at i:24896550 original size:40 final size:40
Alignment explanation
Indices: 24896472--24896550 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 40
24896462 TTATAATCAG
* * * * *
24896472 TACCCTTGATTGCACTTACGTGCCCTTGTTTGTGCTTCGA
1 TACCCCTGATTGCACTTACGTACCCCTGTTTATACTTCGA
24896512 TACCCCTGATTGCACTTACGTACCCCTGTTTATACTTCG
1 TACCCCTGATTGCACTTACGTACCCCTGTTTATACTTCG
24896551 GTAATTTCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.15, C:0.30, G:0.16, T:0.38
Consensus pattern (40 bp):
TACCCCTGATTGCACTTACGTACCCCTGTTTATACTTCGA
Found at i:24897099 original size:12 final size:12
Alignment explanation
Indices: 24897082--24897108 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
24897072 TCAGGTAGTT
24897082 ACACGGCCTAGC
1 ACACGGCCTAGC
24897094 ACACGGCCTAGC
1 ACACGGCCTAGC
24897106 ACA
1 ACA
24897109 TGAGCGTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.41, G:0.22, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:24898102 original size:23 final size:21
Alignment explanation
Indices: 24898072--24898115 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
24898062 CATGAGAATG
24898072 TCAATGCAAAGCTTTTTCAAAAA
1 TCAATGC-AAG-TTTTTCAAAAA
*
24898095 TCAATGCATGTTTTTCAAAAA
1 TCAATGCAAGTTTTTCAAAAA
24898116 CATTCCTACC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 11 0.55
22 2 0.10
23 7 0.35
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.34
Consensus pattern (21 bp):
TCAATGCAAGTTTTTCAAAAA
Found at i:24898392 original size:42 final size:42
Alignment explanation
Indices: 24898333--24898425 Score: 159
Period size: 42 Copynumber: 2.2 Consensus size: 42
24898323 ATATTTTTAG
* *
24898333 TGGCATGCTTAACATGTGAATCAAATTTATAATTAACATAGT
1 TGGCATGCTAAACATGTGAATCAAATTTATAATTAACACAGT
*
24898375 TGGCATGCTAAACATGTGAATCAAATTTATAATTAATACAGT
1 TGGCATGCTAAACATGTGAATCAAATTTATAATTAACACAGT
24898417 TGGCATGCT
1 TGGCATGCT
24898426 TAATATGGGA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.34
Consensus pattern (42 bp):
TGGCATGCTAAACATGTGAATCAAATTTATAATTAACACAGT
Found at i:24900640 original size:29 final size:27
Alignment explanation
Indices: 24900622--24900691 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
24900612 ATATTAAGTC
24900622 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
24900649 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
24900677 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
24900692 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:24900685 original size:28 final size:28
Alignment explanation
Indices: 24900622--24900719 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
24900612 ATATTAAGTC
*
24900622 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
24900649 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
24900677 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
24900706 CGCACACTTAGTGC
1 CGCACACTTAGTGC
24900720 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:24903486 original size:52 final size:52
Alignment explanation
Indices: 24903403--24903503 Score: 175
Period size: 52 Copynumber: 1.9 Consensus size: 52
24903393 TAAGGAAACG
* *
24903403 TAATGGACAGCAGCTTAAGATCTCATTTCTAGCTCGGTTGAAGCTCAAACAA
1 TAATAGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAACAA
*
24903455 TAATAGACAGTAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAA
1 TAATAGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAA
24903504 TATGTGCATG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.28
Consensus pattern (52 bp):
TAATAGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAACAA
Found at i:24906366 original size:227 final size:227
Alignment explanation
Indices: 24905971--24906422 Score: 681
Period size: 227 Copynumber: 2.0 Consensus size: 227
24905961 TTAGTGTCTA
* * * * *
24905971 AAGTGTATCAATGTGTGTATTGAGGAAATGAACAAGTCTATTGTGAAAGAGTCTGTTATGAGTAA
1 AAGTGTATCAATGTGTGTATGGAAGAAATGAAAAAGTCTATTGTGAAAGAGTCTATCATGAGTAA
* *
24906036 GTCATATGTGAATAAGTCTGTCAAGTATAAGTCTGCATGAAGTGTTTATGTTGTCTAAAAGGGTC
66 GTCATATGTGAATAAGTCTGTCAAGTATAAGTCTGCATGAACTATTTATGTTGTCTAAAAGGGTC
* * * *
24906101 CGTCAAGAATAAAAACATGAATCTCTTAAAGGAAAAGTCCATGGCATTCTGAAGACCATATAGTC
131 CGTCAAGAACAAAAACATGAATCTCTGAAAGGAAAAGTCCATGGCACTCTAAAGACCATATAGTC
*
24906166 TAAGACCATGGCTGGGCTATGGCATCATATGG
196 TAAGACCATGGCTAGGCTATGGCATCATATGG
* *
24906198 AAGTGTATCAATGTGTGTATGGAAGATATGAAAAAGTCTATTGTGAAAGAGTCTATCATGTGTAA
1 AAGTGTATCAATGTGTGTATGGAAGAAATGAAAAAGTCTATTGTGAAAGAGTCTATCATGAGTAA
* * * * * * *
24906263 GTCATATGTGGATGAGTTTGTTAAGTATGAGTCTGCATGAACTATTTGTGTTGTCT-AAAGGGGC
66 GTCATATGTGAATAAGTCTGTCAAGTATAAGTCTGCATGAACTATTTATGTTGTCTAAAAGGGTC
* *
24906327 TCTTCGAGAACAAAAACATGAATCTCTGAAAGGAAAAGTCCATGGCACTCTAAAGACCATATAGT
131 -CGTCAAGAACAAAAACATGAATCTCTGAAAGGAAAAGTCCATGGCACTCTAAAGACCATATAGT
24906392 CTAAGACCATGGCTAGGCTATGGCATCATAT
195 CTAAGACCATGGCTAGGCTATGGCATCATAT
24906423 TTTAAAAATT
Statistics
Matches: 201, Mismatches: 23, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
226 7 0.03
227 194 0.97
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.30
Consensus pattern (227 bp):
AAGTGTATCAATGTGTGTATGGAAGAAATGAAAAAGTCTATTGTGAAAGAGTCTATCATGAGTAA
GTCATATGTGAATAAGTCTGTCAAGTATAAGTCTGCATGAACTATTTATGTTGTCTAAAAGGGTC
CGTCAAGAACAAAAACATGAATCTCTGAAAGGAAAAGTCCATGGCACTCTAAAGACCATATAGTC
TAAGACCATGGCTAGGCTATGGCATCATATGG
Found at i:24906571 original size:29 final size:29
Alignment explanation
Indices: 24906538--24906685 Score: 147
Period size: 29 Copynumber: 5.1 Consensus size: 29
24906528 AAAGAAATCT
*
24906538 TTTGTGGCTATCTCTGTTAACAGGAAGCC
1 TTTGTGGCTATCTCTGTTAAAAGGAAGCC
* * **
24906567 TTTGTGGCTATTTCTATTAAAAGGATTCC
1 TTTGTGGCTATCTCTGTTAAAAGGAAGCC
* *
24906596 CTTGTGGCAATCTCTGTTAAAAGGAAGCC
1 TTTGTGGCTATCTCTGTTAAAAGGAAGCC
* *
24906625 TTTGTGG-TGATCTTTGTTAAAGGGAAGCC
1 TTTGTGGCT-ATCTCTGTTAAAAGGAAGCC
* * * *
24906654 TTTATAG-TGATCTCTGTTAAAATGATGCC
1 TTTGTGGCT-ATCTCTGTTAAAAGGAAGCC
24906683 TTT
1 TTT
24906686 ATGGTGAGAC
Statistics
Matches: 97, Mismatches: 21, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
29 97 1.00
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.39
Consensus pattern (29 bp):
TTTGTGGCTATCTCTGTTAAAAGGAAGCC
Found at i:24907885 original size:21 final size:23
Alignment explanation
Indices: 24907840--24907886 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
24907830 TCACCTGCAA
* *
24907840 TAAACACATTAAAATGAGTTTAT
1 TAAACACATTAAAATCAGCTTAT
24907863 TAAACACATTAAAA-CA-CTTAT
1 TAAACACATTAAAATCAGCTTAT
24907884 TAA
1 TAA
24907887 TCATAACACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 1 0.05
23 14 0.64
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (23 bp):
TAAACACATTAAAATCAGCTTAT
Found at i:24915276 original size:16 final size:18
Alignment explanation
Indices: 24915244--24915276 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
24915234 GGTTTAAATT
24915244 TTGAAATAGCAAACATTG
1 TTGAAATAGCAAACATTG
24915262 TTGAAAT-GC-AACATT
1 TTGAAATAGCAAACATT
24915277 ATGTTGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 2 0.13
18 7 0.47
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (18 bp):
TTGAAATAGCAAACATTG
Found at i:24921823 original size:27 final size:27
Alignment explanation
Indices: 24921793--24921970 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
24921783 ATATTGAGTC
* *
24921793 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
24921820 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
24921847 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
24921875 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
**
24921902 CGCACACTTAGTGCATCACAT--TCATTT
1 CGCACACTTAGTGC-T-ACATAATCAACT
* * *
24921929 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
24921956 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24921971 GTACAATTTA
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
25 4 0.03
27 98 0.77
28 23 0.18
29 3 0.02
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:24935162 original size:25 final size:25
Alignment explanation
Indices: 24935132--24935184 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
24935122 TATTCCCAAA
24935132 ACTGCCTTCAGAACGAGATATGGTC
1 ACTGCCTTCAGAACGAGATATGGTC
24935157 ACTGCCTTCAGAACGAGATATGGTC
1 ACTGCCTTCAGAACGAGATATGGTC
24935182 ACT
1 ACT
24935185 ACGATTCTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (25 bp):
ACTGCCTTCAGAACGAGATATGGTC
Found at i:24939183 original size:40 final size:40
Alignment explanation
Indices: 24939099--24939282 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
24939089 TTGAATGCTG
* * * *
24939099 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
24939138 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
24939179 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
24939219 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
24939259 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
24939283 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:24939236 original size:80 final size:81
Alignment explanation
Indices: 24939099--24939279 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
24939089 TTGAATGCTG
* * *
24939099 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
24939163 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
24939179 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
24939240 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
24939259 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
24939280 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:24939303 original size:39 final size:38
Alignment explanation
Indices: 24939180--24939329 Score: 131
Period size: 40 Copynumber: 3.8 Consensus size: 38
24939170 GTTATTAATT
* ** * *
24939180 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACTAA-A
** *
24939220 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-AAA
*
24939259 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTA-AA
* *
24939299 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
24939330 GAGCTAAATC
Statistics
Matches: 93, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
39 30 0.32
40 63 0.68
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAAA
Found at i:24941450 original size:25 final size:25
Alignment explanation
Indices: 24941338--24941457 Score: 118
Period size: 25 Copynumber: 4.8 Consensus size: 25
24941328 TAGGGACACT
*
24941338 GTAAGCTACTT-CGAGCTGAGTAACG
1 GTAAGCT-CTTACGAGCTGAATAACG
* * *
24941363 GTAAGCTCTTCCGAGCTAAATAATG
1 GTAAGCTCTTACGAGCTGAATAACG
* * * * *
24941388 GTAAGCTCCTCCAAGATAAATAACG
1 GTAAGCTCTTACGAGCTGAATAACG
*
24941413 GTAAGCTCATACGAGCTGAATAACG
1 GTAAGCTCTTACGAGCTGAATAACG
24941438 GTAAG-TCTTTACGAGCTGAA
1 GTAAGCTC-TTACGAGCTGAA
24941458 ATTGGTAACC
Statistics
Matches: 80, Mismatches: 13, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
24 5 0.06
25 75 0.94
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.24
Consensus pattern (25 bp):
GTAAGCTCTTACGAGCTGAATAACG
Found at i:24946532 original size:23 final size:22
Alignment explanation
Indices: 24946489--24946532 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
24946479 TTCTAAGTCG
24946489 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
24946512 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
24946533 TTGGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:24953696 original size:119 final size:120
Alignment explanation
Indices: 24953514--24953736 Score: 283
Period size: 119 Copynumber: 1.9 Consensus size: 120
24953504 TCCTCGTTCA
* * *
24953514 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACCAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGAT
* *
24953579 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
24953634 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCACACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCACACAAATGCCTTCGGGA-CTTAACCCGG
* * *
24953696 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
24953737 CATCATTCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
118 4 0.05
119 64 0.73
120 20 0.23
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:24953736 original size:40 final size:40
Alignment explanation
Indices: 24953512--24953736 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
24953502 GCTCCTCGTT
* *
24953512 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
24953552 CCAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
24953592 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
24953632 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
24953671 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
24953712 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
24953737 CATCATTCAA
Statistics
Matches: 160, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
38 2 0.01
39 30 0.19
40 117 0.73
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:24955325 original size:22 final size:22
Alignment explanation
Indices: 24955293--24955365 Score: 61
Period size: 22 Copynumber: 3.5 Consensus size: 22
24955283 TTTTGGGCTG
*
24955293 TCACATCACATTACACATATAA
1 TCACATAACATTACACATATAA
24955315 TCACATAACATTTA-AGCATAT-A
1 TCACATAACA-TTACA-CATATAA
*
24955337 TCAC---A-A-TACTCATATAA
1 TCACATAACATTACACATATAA
24955354 TCACATAACATT
1 TCACATAACATT
24955366 TAAGCATATA
Statistics
Matches: 40, Mismatches: 2, Indels: 18
0.67 0.03 0.30
Matches are distributed among these distances:
16 7 0.17
17 5 0.12
18 1 0.03
19 1 0.03
20 1 0.03
21 1 0.03
22 16 0.40
23 8 0.20
ACGTcount: A:0.45, C:0.23, G:0.01, T:0.30
Consensus pattern (22 bp):
TCACATAACATTACACATATAA
Found at i:24955351 original size:39 final size:39
Alignment explanation
Indices: 24955297--24955465 Score: 248
Period size: 39 Copynumber: 4.3 Consensus size: 39
24955287 GGGCTGTCAC
* *
24955297 ATCACATTACACATATAATCACATAACATTTAAGCATAT
1 ATCACAATACTCATATAATCACATAACATTTAAGCATAT
24955336 ATCACAATACTCATATAATCACATAACATTTAAGCATAT
1 ATCACAATACTCATATAATCACATAACATTTAAGCATAT
* * *
24955375 ATCATAATTCTTATATAATCACATAACATTTAAGCATAT
1 ATCACAATACTCATATAATCACATAACATTTAAGCATAT
* * * * *
24955414 ATTACAATACTCATATAACCACATAATATTCAAACATAT
1 ATCACAATACTCATATAATCACATAACATTTAAGCATAT
24955453 ATCACAATACTCA
1 ATCACAATACTCA
24955466 AAAACATGTT
Statistics
Matches: 116, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 116 1.00
ACGTcount: A:0.46, C:0.20, G:0.02, T:0.32
Consensus pattern (39 bp):
ATCACAATACTCATATAATCACATAACATTTAAGCATAT
Found at i:24961638 original size:20 final size:20
Alignment explanation
Indices: 24961613--24961651 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
24961603 AATATACACT
24961613 TGAAACTTCTTCAATCAGAA
1 TGAAACTTCTTCAATCAGAA
24961633 TGAAACTTCTTCAATCAGA
1 TGAAACTTCTTCAATCAGA
24961652 GTTTGCAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (20 bp):
TGAAACTTCTTCAATCAGAA
Found at i:24965564 original size:38 final size:38
Alignment explanation
Indices: 24965513--24965590 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
24965503 TTATCACTGG
*
24965513 CTACAACAAACCAGAAGGCACCTGATGTTGAGCTTTTA
1 CTACAACAAACCAGAAGGCACCTGATGTTCAGCTTTTA
24965551 CTACAACAAACCAGAAGGCACCTGATGTTCAGCTTTTA
1 CTACAACAAACCAGAAGGCACCTGATGTTCAGCTTTTA
24965589 CT
1 CT
24965591 TGCTGACATA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (38 bp):
CTACAACAAACCAGAAGGCACCTGATGTTCAGCTTTTA
Found at i:24969306 original size:27 final size:27
Alignment explanation
Indices: 24969275--24969479 Score: 252
Period size: 27 Copynumber: 7.6 Consensus size: 27
24969265 ATATTGAGTC
* * *
24969275 CGCACACTCAGTGCTATATCA-TCAACT
1 CGCACACTTAGTGCTACAT-AGTCAAAT
* *
24969302 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
24969329 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
24969357 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
24969384 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
24969411 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
24969438 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
24969465 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24969480 GTACAATTTA
Statistics
Matches: 156, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
26 1 0.01
27 131 0.84
28 24 0.15
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:24977513 original size:27 final size:27
Alignment explanation
Indices: 24977483--24977687 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
24977473 ATATTGAGTC
* * * *
24977483 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
24977510 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
24977537 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
24977565 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
24977592 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
24977619 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
24977646 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
24977673 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24977688 GTACAATTTA
Statistics
Matches: 157, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 24 0.15
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:24990270 original size:32 final size:32
Alignment explanation
Indices: 24990229--24990293 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
24990219 ATATTACGAC
24990229 ATGAAATAAAATACTTTAAAATCTTTTCTCGT
1 ATGAAATAAAATACTTTAAAATCTTTTCTCGT
24990261 ATGAAATAAAATACTTTAAAATCTTTTCTCGT
1 ATGAAATAAAATACTTTAAAATCTTTTCTCGT
24990293 A
1 A
24990294 CCTTGTAAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.40
Consensus pattern (32 bp):
ATGAAATAAAATACTTTAAAATCTTTTCTCGT
Found at i:25000016 original size:20 final size:20
Alignment explanation
Indices: 24999980--25000029 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
24999970 ATCATGGTCT
* *
24999980 TTGCTTTCTTCTTTACTTAC
1 TTGCTTACTTGTTTACTTAC
25000000 TCT-CTTACTTGTTTACTTAC
1 T-TGCTTACTTGTTTACTTAC
25000020 TTGCTTACTT
1 TTGCTTACTT
25000030 AAATAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 1 0.04
20 24 0.92
21 1 0.04
ACGTcount: A:0.12, C:0.24, G:0.06, T:0.58
Consensus pattern (20 bp):
TTGCTTACTTGTTTACTTAC
Found at i:25000383 original size:50 final size:50
Alignment explanation
Indices: 25000322--25000477 Score: 170
Period size: 50 Copynumber: 3.1 Consensus size: 50
25000312 ACATAAGAGT
* ** * * * *
25000322 TCTCATATCGGTGCCCATGCCATGTCCCAGATATGGTCTTGCGGGGGACC
1 TCTCATCTCGGTGCAAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
*
25000372 TCTGATCTCGGTGCAAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
1 TCTCATCTCGGTGCAAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
** * * * *
25000422 TCTCATCTCTATACTAACACCATGTCCTAGACATGGTCTTAC-GTGGGACC
1 TCTCATCTCGGTGCAAACGCCATGTCCCAGACATGGTCTTACAG-GGGACC
25000472 TCTCAT
1 TCTCAT
25000478 AACCTAAATA
Statistics
Matches: 90, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
49 1 0.01
50 89 0.99
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.27
Consensus pattern (50 bp):
TCTCATCTCGGTGCAAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
Found at i:25000997 original size:90 final size:90
Alignment explanation
Indices: 25000878--25001061 Score: 368
Period size: 90 Copynumber: 2.0 Consensus size: 90
25000868 CTTTGGCAAA
25000878 ATTACAATTTTGCCCCTAAACTTTTGCTTATTTACACTTTTTCCCTAAAGTTGTAACATCAAATT
1 ATTACAATTTTGCCCCTAAACTTTTGCTTATTTACACTTTTTCCCTAAAGTTGTAACATCAAATT
25000943 CCCACTCTAACATTTACTTATAAAC
66 CCCACTCTAACATTTACTTATAAAC
25000968 ATTACAATTTTGCCCCTAAACTTTTGCTTATTTACACTTTTTCCCTAAAGTTGTAACATCAAATT
1 ATTACAATTTTGCCCCTAAACTTTTGCTTATTTACACTTTTTCCCTAAAGTTGTAACATCAAATT
25001033 CCCACTCTAACATTTACTTATAAAC
66 CCCACTCTAACATTTACTTATAAAC
25001058 ATTA
1 ATTA
25001062 GGTACTTTTA
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 94 1.00
ACGTcount: A:0.32, C:0.24, G:0.04, T:0.40
Consensus pattern (90 bp):
ATTACAATTTTGCCCCTAAACTTTTGCTTATTTACACTTTTTCCCTAAAGTTGTAACATCAAATT
CCCACTCTAACATTTACTTATAAAC
Found at i:25005374 original size:20 final size:20
Alignment explanation
Indices: 25005349--25005397 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
25005339 TGAGTTATTT
25005349 AAGTAAGCAAGTAAGTAAAC
1 AAGTAAGCAAGTAAGTAAAC
*
25005369 AAGTAAG-AGAGTAAGTAAAG
1 AAGTAAGCA-AGTAAGTAAAC
25005389 AAG-AAGCAA
1 AAGTAAGCAA
25005398 ATACCATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.57, C:0.06, G:0.24, T:0.12
Consensus pattern (20 bp):
AAGTAAGCAAGTAAGTAAAC
Found at i:25012753 original size:23 final size:23
Alignment explanation
Indices: 25012727--25012847 Score: 181
Period size: 23 Copynumber: 5.3 Consensus size: 23
25012717 ATAAGTGTCA
*
25012727 CACTGATATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
25012750 CACTGATATGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
25012773 CACTGA-ATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* * *
25012795 CACTAATATGTAGCTGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
25012818 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
25012841 CACTGAT
1 CACTGAT
25012848 CAATAACACT
Statistics
Matches: 86, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
22 20 0.23
23 66 0.77
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:25012792 original size:45 final size:45
Alignment explanation
Indices: 25012727--25012847 Score: 197
Period size: 45 Copynumber: 2.6 Consensus size: 45
25012717 ATAAGTGTCA
*
25012727 CACTGATATGTAGCCAAAGCTACCACTGATATGTAGCCGTAGCTAC
1 CACTGA-ATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTAC
* *
25012773 CACTGAATGTAGCCGAAGCTACCACTAATATGTAGCTGTAGCTAC
1 CACTGAATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTAC
25012818 CACTGAAATGTAGCCGAAGCTACCACTGAT
1 CACTG-AATGTAGCCGAAGCTACCACTGAT
25012848 CAATAACACT
Statistics
Matches: 70, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
45 41 0.59
46 29 0.41
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (45 bp):
CACTGAATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTAC
Found at i:25015903 original size:20 final size:20
Alignment explanation
Indices: 25015878--25015936 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
25015868 TAAATGCAAA
*
25015878 TGAGCTTAAAA-TGAGCTGAT
1 TGAGC-TAAAAGTGAGCTGAG
25015898 TGAGCTAAAAGTGAGCTCG-G
1 TGAGCTAAAAGTGAGCT-GAG
*
25015918 TGAGCTAAAATTGAGCTGA
1 TGAGCTAAAAGTGAGCTGA
25015937 ATGAACTTGA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
19 6 0.18
20 27 0.79
21 1 0.03
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (20 bp):
TGAGCTAAAAGTGAGCTGAG
Found at i:25017142 original size:20 final size:19
Alignment explanation
Indices: 25017119--25017173 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 19
25017109 TCATGCTTTA
25017119 AATACTAAATTCTATCTACC
1 AATACTAAATTCTATCTA-C
*
25017139 AATAC-AACATT-TATTGTAC
1 AATACTAA-ATTCTA-TCTAC
25017158 AATACTAAATATCTAT
1 AATACTAAAT-TCTAT
25017174 GAAGATCATA
Statistics
Matches: 29, Mismatches: 1, Indels: 10
0.73 0.03 0.25
Matches are distributed among these distances:
19 12 0.41
20 15 0.52
21 2 0.07
ACGTcount: A:0.44, C:0.18, G:0.02, T:0.36
Consensus pattern (19 bp):
AATACTAAATTCTATCTAC
Found at i:25019304 original size:50 final size:50
Alignment explanation
Indices: 25019239--25019436 Score: 213
Period size: 50 Copynumber: 4.0 Consensus size: 50
25019229 AAAGTGAAAG
* * *
25019239 TGAT-GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTATACCGAAA
1 TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAGA
* * * *
25019288 TGATAGGCCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCG-GA
1 TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAGA
* * * *
25019337 TAGTTTCGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATC-AGA
1 T-G-ATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAGA
* * * *
25019388 TGGTAGGGTCACATGTGTAGCACTATGTGCAGGCTACTATGTGAACCGA
1 TGATA-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGA
25019437 ACATTATTGA
Statistics
Matches: 121, Mismatches: 22, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
49 7 0.06
50 74 0.61
51 40 0.33
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.29
Consensus pattern (50 bp):
TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAGA
Found at i:25019362 original size:101 final size:101
Alignment explanation
Indices: 25019243--25019428 Score: 293
Period size: 101 Copynumber: 1.8 Consensus size: 101
25019233 TGAAAGTGAT
*
25019243 GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTATACCGAAATGATA-GGCCGCATGTGTAG
1 GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTATACC-AAATGATAGGGCCACATGTGTAG
*
25019307 TACTATGTGCAGGCTACTATGCGTACCGGATAGTTTC
65 CACTATGTGCAGGCTACTATGCGTACCGGATAGTTTC
* * * * *
25019344 GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATGGTAGGGTCACATGTGTAGC
1 GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTATACCAAATGATAGGGCCACATGTGTAGC
25019409 ACTATGTGCAGGCTACTATG
66 ACTATGTGCAGGCTACTATG
25019429 TGAACCGAAC
Statistics
Matches: 77, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
100 6 0.08
101 71 0.92
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (101 bp):
GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTATACCAAATGATAGGGCCACATGTGTAGC
ACTATGTGCAGGCTACTATGCGTACCGGATAGTTTC
Found at i:25019516 original size:45 final size:45
Alignment explanation
Indices: 25019432--25019526 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 45
25019422 TACTATGTGA
* * * *
25019432 ACCGAACATTATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTTACTATGTGCTGAATCC
* *
25019477 ACCGGACATCATTGATTAATAAGGTGGTTACTATTTGCTGAATCC
1 ACCGAACATCATTGATTAATAAGGTGGTTACTATGTGCTGAATCC
25019522 ACCGA
1 ACCGA
25019527 GTATCTATTA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTACTATGTGCTGAATCC
Found at i:25024686 original size:26 final size:26
Alignment explanation
Indices: 25024649--25024707 Score: 109
Period size: 26 Copynumber: 2.2 Consensus size: 26
25024639 CCTCGTCATA
25024649 TGAATTTATAAATTTTCACTTACTTGT
1 TGAA-TTATAAATTTTCACTTACTTGT
25024676 TGAATTATAAATTTTCACTTACTTGT
1 TGAATTATAAATTTTCACTTACTTGT
25024702 TGAATT
1 TGAATT
25024708 CATCCTGAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 28 0.88
27 4 0.12
ACGTcount: A:0.31, C:0.10, G:0.08, T:0.51
Consensus pattern (26 bp):
TGAATTATAAATTTTCACTTACTTGT
Found at i:25025926 original size:41 final size:40
Alignment explanation
Indices: 25025881--25026068 Score: 155
Period size: 41 Copynumber: 4.5 Consensus size: 40
25025871 GTTACTCGGT
*
25025881 GGAATCAGCACTTAGCAACCACCTTATATTCAGTGATACGG
1 GGAATCAGCACTTAGCAACC-CCTTATAATCAGTGATACGG
* * * *
25025922 GGAATCAGCACATAGCAACCCGTTCCACAATCAAG-GATACGAT
1 GGAATCAGCACTTAGCAACCCCTT--ATAATC-AGTGATACG-G
* * * * **
25025965 GGAATCAGCACTTAGCAACCACTTTTAGAATCAATAATTTGG
1 GGAATCAGCACTTAGCAACC-C-CTTATAATCAGTGATACGG
* *
25026007 GGAATCAGCACTTAGCAACCCCTCTTTGATCAGTGATTA-GG
1 GGAATCAGCACTTAGCAACCCCT-TATAATCAGTGA-TACGG
*
25026048 GGAATCTGCACTTAGCAACCC
1 GGAATCAGCACTTAGCAACCC
25026069 TTTACATTCA
Statistics
Matches: 117, Mismatches: 21, Indels: 18
0.75 0.13 0.12
Matches are distributed among these distances:
40 4 0.03
41 49 0.42
42 32 0.27
43 29 0.25
44 1 0.01
45 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.23
Consensus pattern (40 bp):
GGAATCAGCACTTAGCAACCCCTTATAATCAGTGATACGG
Found at i:25028225 original size:37 final size:39
Alignment explanation
Indices: 25028108--25028327 Score: 272
Period size: 40 Copynumber: 5.7 Consensus size: 39
25028098 GCTCCTCGTT
* *
25028108 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
*
25028148 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCA
*
25028188 CAAATGCCTTCGGG-CTTA-CCCGGATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
*
25028225 CAAATGCCTTC-GG-CTTAGCCCGGATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
* * * *
25028262 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
25028303 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
25028328 CATCATTCAA
Statistics
Matches: 163, Mismatches: 10, Indels: 14
0.87 0.05 0.07
Matches are distributed among these distances:
36 6 0.04
37 55 0.34
38 6 0.04
39 15 0.09
40 69 0.42
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:25028273 original size:74 final size:80
Alignment explanation
Indices: 25028108--25028327 Score: 267
Period size: 77 Copynumber: 2.8 Consensus size: 80
25028098 GCTCCTCGTT
*
25028108 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
25028173 ATTTAGTAACTCGCA
66 ATTTAGTAACTCGCA
* * *
25028188 CAAATGCCTTCGGG-CTTA-CCCGGAT-TAGTATCTCGCACAAATGCCTTC-GG-CTTAGCCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
25028248 A-TTAGTATCTCGCA
66 ATTTAGTAACTCGCA
* * * * * *
25028262 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CATAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCC
25028325 GGA
64 GGA
25028328 CATCATTCAA
Statistics
Matches: 123, Mismatches: 10, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
73 2 0.02
74 23 0.19
75 14 0.11
76 8 0.07
77 32 0.26
78 16 0.13
79 14 0.11
80 14 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATTTAGTAACTCGCA
Found at i:25036145 original size:40 final size:40
Alignment explanation
Indices: 25036101--25036323 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
25036091 GCTCCTCGTT
* *
25036101 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
25036141 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
25036181 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
*
25036220 CAAATGCCTTC-GGACTTAGCCCGGAT-TAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
25036258 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
25036299 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
25036324 CATCATTCAA
Statistics
Matches: 163, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
38 28 0.17
39 54 0.33
40 70 0.43
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:25036203 original size:79 final size:77
Alignment explanation
Indices: 25036101--25036323 Score: 279
Period size: 79 Copynumber: 2.8 Consensus size: 77
25036091 GCTCCTCGTT
* *
25036101 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
25036166 ATTTAGTAACTCGCA
64 A-TTAGTAACTCGCA
* *
25036181 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGACTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
25036245 TTAGTATCTCGCA
65 TTAGTAACTCGCA
* * * * *
25036258 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
25036322 GA
63 GA
25036324 CATCATTCAA
Statistics
Matches: 126, Mismatches: 12, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
77 25 0.20
78 33 0.26
79 54 0.43
80 14 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (77 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
TAGTAACTCGCA
Found at i:25042670 original size:40 final size:40
Alignment explanation
Indices: 25042626--25042848 Score: 244
Period size: 40 Copynumber: 5.7 Consensus size: 40
25042616 GCTCCTCGTT
*
25042626 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
25042666 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
25042706 CAAATGCCTTCGGG-CTTTGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
25042745 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
25042785 CAAATTCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
25042826 C--A-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
25042849 CATCATTCAA
Statistics
Matches: 161, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
38 17 0.11
39 36 0.22
40 101 0.63
41 7 0.04
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:25042737 original size:79 final size:80
Alignment explanation
Indices: 25042626--25042797 Score: 233
Period size: 79 Copynumber: 2.2 Consensus size: 80
25042616 GCTCCTCGTT
*
25042626 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
25042690 GATTTAGTAACTCGCA
65 GATTTAGTAACTCGCA
* * * **
25042706 CAAATGCCTTCGGG-CTTTGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
*
25042769 GATTTAGTATCTCGCA
65 GATTTAGTAACTCGCA
*
25042785 CAAATTCCTTCGG
1 CAAATGCCTTCGG
25042798 ATCTTAGTCC
Statistics
Matches: 82, Mismatches: 8, Indels: 5
0.86 0.08 0.05
Matches are distributed among these distances:
78 4 0.05
79 64 0.78
80 14 0.17
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (80 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATTTAGTAACTCGCA
Found at i:25049292 original size:40 final size:40
Alignment explanation
Indices: 25049248--25049471 Score: 237
Period size: 40 Copynumber: 5.6 Consensus size: 40
25049238 GCTCCTCGTT
*
25049248 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
25049288 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
25049328 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* *
25049367 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTATAGTAACTCGCA
* * * * * *
25049407 CAAATTCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
25049448 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
25049472 ACATCATTCA
Statistics
Matches: 159, Mismatches: 15, Indels: 20
0.82 0.08 0.10
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 112 0.70
41 13 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:25049350 original size:79 final size:78
Alignment explanation
Indices: 25049248--25049472 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
25049238 GCTCCTCGTT
* *
25049248 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
25049313 ATTTAGTAACTCGCA
64 ATTTAGTAACTCGCA
* * *
25049328 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
*
25049392 ATTTAGTATCTCGCA
64 ATTTAGTAACTCGCA
* * * * * *
25049407 CAAATTCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
25049471 GA
63 GA
25049473 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
78 4 0.03
79 65 0.52
80 43 0.35
81 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
TTAGTAACTCGCA
Found at i:25049432 original size:119 final size:120
Alignment explanation
Indices: 25049248--25049472 Score: 289
Period size: 119 Copynumber: 1.9 Consensus size: 120
25049238 GCTCCTCGTT
25049248 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
25049313 ATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * * * **
25049367 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTATCTCGCACAAATTCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACC
* *
25049429 CGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
63 CGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
25049473 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
118 6 0.07
119 64 0.70
120 21 0.23
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:25053648 original size:50 final size:49
Alignment explanation
Indices: 25053466--25053653 Score: 198
Period size: 50 Copynumber: 3.8 Consensus size: 49
25053456 AAAGTGAAAG
* * * * *
25053466 TGAT-GGTCACGTGTGTAGTACTATGTACAGGTTACTACGTGTACTGAAA
1 TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-TCAGA
* * * *
25053515 TGATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGA
1 TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGA
* * * *
25053564 TAGTTTCGATCACATGTGTAGTACTATGTGCAGGCTACTACATGTATCAGA
1 T-G-ATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGA
* *
25053615 TGGTAGGGTCACATGTGTAGCACTATGTGCAGGCTACTA
1 TGATA-GGTCACATGTGTAGTACTATGTGCAGGCTACTA
25053654 TGTGAACCGA
Statistics
Matches: 114, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
49 8 0.07
50 66 0.58
51 40 0.35
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.31
Consensus pattern (49 bp):
TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGA
Found at i:25053652 original size:101 final size:101
Alignment explanation
Indices: 25053472--25053655 Score: 271
Period size: 101 Copynumber: 1.8 Consensus size: 101
25053462 AAAGTGATGG
* * * * * *
25053472 TCACGTGTGTAGTACTATGTACAGGTTACTACGTGTACTGAAATGATAGGTCGCATGTGTAGTAC
1 TCACATGTGTAGTACTATGTACAGGCTACTACATGTACTCAAATGATAGGTCACATGTGTAGCAC
25053537 TATGTGCAGGCTACTATGCGTACCAGATAGTTTCGA
66 TATGTGCAGGCTACTATGCGTACCAGATAGTTTCGA
* * *
25053573 TCACATGTGTAGTACTATGTGCAGGCTACTACATGTA-TCAGATGGTAGGGTCACATGTGTAGCA
1 TCACATGTGTAGTACTATGTACAGGCTACTACATGTACTCAAATGATA-GGTCACATGTGTAGCA
25053637 CTATGTGCAGGCTACTATG
65 CTATGTGCAGGCTACTATG
25053656 TGAACCGAAC
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
100 7 0.10
101 66 0.90
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (101 bp):
TCACATGTGTAGTACTATGTACAGGCTACTACATGTACTCAAATGATAGGTCACATGTGTAGCAC
TATGTGCAGGCTACTATGCGTACCAGATAGTTTCGA
Found at i:25053742 original size:45 final size:45
Alignment explanation
Indices: 25053659--25053753 Score: 145
Period size: 45 Copynumber: 2.1 Consensus size: 45
25053649 TACTATGTGA
* * * *
25053659 ACCGAACATTATTGGTTAGTAAGGTGGTTGCTATGTGCTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
*
25053704 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
25053749 ACCGA
1 ACCGA
25053754 GTATCTGTTA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
Found at i:25063645 original size:100 final size:100
Alignment explanation
Indices: 25063338--25063824 Score: 517
Period size: 100 Copynumber: 4.8 Consensus size: 100
25063328 GAGATTTGCT
* * * * *
25063338 GTTGTAGCTTCAATCTG-TTCCATTGCACCGCCTGGGAAAGTAAGATTCG-TCATTGT-GACTTT
1 GTTGTGGCTTTAATCTGCTT-CACTGCACTGCCTGGG-AAGTAAGATTCGCT-GTTGTAG-CTTT
* *
25063400 AATCCTTTTAGCTGCAATGTCGGAAAAGCAAGATTCACC
62 AATCCTTTTAACTGCAATGTCGGGAAAGCAAGATTCACC
* * * * *
25063439 GTTATGGCTTTAATCTGC-TCTACTGCACTGGCTGAGAGAGTGAGATTCG-TCGTGGTCA-CTTT
1 GTTGTGGCTTTAATCTGCTTC-ACTGCACTGCCTGGGA-AGTAAGATTCGCT-GTTGT-AGCTTT
* *
25063501 AATCCTTTTAACTAG-AATGTCGGGAAAACAAGATTTACC
62 AATCCTTTTAACT-GCAATGTCGGGAAAGCAAGATTCACC
* * * * * * * * *
25063540 ATTGTGGCTTTAATCTGCTTCACTGCATTGCCAGGGAAGTAACACTCACAGTTGTGGCTTTAGTC
1 GTTGTGGCTTTAATCTGCTTCACTGCACTGCCTGGGAAGTAAGATTCGCTGTTGTAGCTTTAATC
*
25063605 TTTTTAACTGCAATGTCAGGGAAA-CAAGATTCACC
66 CTTTTAACTGCAATGTC-GGGAAAGCAAGATTCACC
25063640 GTTGTGGCTTTAATCTG-TTCCACTGCACTGCCTGGGAAGTAAGATTCGCTGTTGTAGCTTTAAT
1 GTTGTGGCTTTAATCTGCTT-CACTGCACTGCCTGGGAAGTAAGATTCGCTGTTGTAGCTTTAAT
*
25063704 CCTTTTAGCTGCAATGTCGGGAAAGCAAGATTCACC
65 CCTTTTAACTGCAATGTCGGGAAAGCAAGATTCACC
* ** *
25063740 GATGTGGCTTTAATCTATTTCACTGCA-TCGCCTGGGGAGTAAGATTCGCTGTTGTAGCTTTAAT
1 GTTGTGGCTTTAATCTGCTTCACTGCACT-GCCTGGGAAGTAAGATTCGCTGTTGTAGCTTTAAT
* *
25063804 CTTTTTAACTGTAATGTCGGG
65 CCTTTTAACTGCAATGTCGGG
25063825 GAGTAAGGTT
Statistics
Matches: 324, Mismatches: 47, Indels: 31
0.81 0.12 0.08
Matches are distributed among these distances:
99 10 0.03
100 197 0.61
101 114 0.35
102 3 0.01
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (100 bp):
GTTGTGGCTTTAATCTGCTTCACTGCACTGCCTGGGAAGTAAGATTCGCTGTTGTAGCTTTAATC
CTTTTAACTGCAATGTCGGGAAAGCAAGATTCACC
Found at i:25063766 original size:50 final size:51
Alignment explanation
Indices: 25063371--25063766 Score: 242
Period size: 50 Copynumber: 7.9 Consensus size: 51
25063361 TGCACCGCCT
* ** * *
25063371 GGGAAAGTAAGATTCGTCATTGTGACTTTAATCCT-TTT-AGCTGCAATGTC-
1 GGGAAAGCAAGATTCACCGTTGTGGCTTTAAT-CTGTTTCA-CTGCAATGTCA
* * * * * *
25063421 GGAAAAGCAAGATTCACCGTTATGGCTTTAATCTG-CTCTACTGCACTGGCT
1 GGGAAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTTC-ACTGCAATGTCA
* * ** ** * ** *
25063472 GAGAGAGTGAGATTCGTCGTGGTCACTTTAATCCT-TTTAACTAG-AATGTC-
1 GGGAAAGCAAGATTCACCGTTGTGGCTTTAAT-CTGTTTCACT-GCAATGTCA
* * * * * *
25063522 GGGAAAACAAGATTTACCATTGTGGCTTTAATCTGCTTCACTGCATTGCCA
1 GGGAAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTTCACTGCAATGTCA
* * * * * * *
25063573 GGG-AAGTAACACTCACAGTTGTGGCTTTAGTCTTTTTAACTGCAATGTCA
1 GGGAAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTTCACTGCAATGTCA
* * * *
25063623 GGGAAA-CAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACTGCCT
1 GGGAAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTTCACTGCAATGTCA
* * * *
25063673 GGG-AAGTAAGATTCGCTGTTGTAGCTTTAATCCT-TTT-AGCTGCAATGTC-
1 GGGAAAGCAAGATTCACCGTTGTGGCTTTAAT-CTGTTTCA-CTGCAATGTCA
* *
25063722 GGGAAAGCAAGATTCACCGATGTGGCTTTAATCTATTTCACTGCA
1 GGGAAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTTCACTGCA
25063767 TCGCCTGGGG
Statistics
Matches: 252, Mismatches: 77, Indels: 34
0.69 0.21 0.09
Matches are distributed among these distances:
49 14 0.06
50 197 0.78
51 37 0.15
52 4 0.02
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.33
Consensus pattern (51 bp):
GGGAAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTTCACTGCAATGTCA
Found at i:25063784 original size:50 final size:49
Alignment explanation
Indices: 25063530--25063814 Score: 225
Period size: 50 Copynumber: 5.7 Consensus size: 49
25063520 TCGGGAAAAC
* * *
25063530 AAGATTTACCATTGTGGCTTTAATCTGCTTCACTGCATTGCCAGGGAAGT
1 AAGATTCACCGTTGTGGCTTTAATCTGTTTCACTGCA-TGCCAGGGAAGT
* * * * * * * **
25063580 AACACTCACAGTTGTGGCTTTAGTCTTTTTAACTGCAATGTCAGGGAAAC
1 AAGATTCACCGTTGTGGCTTTAATCTGTTTCACTGC-ATGCCAGGGAAGT
* *
25063630 AAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACTGCCTGGGAAGT
1 AAGATTCACCGTTGTGGCTTTAATCTGTTTCACTGCA-TGCCAGGGAAGT
* * * * *
25063680 AAGATTCGCTGTTGTAGCTTTAATCCT-TTT-AGCTGCAATGTC-GGGAAAGC
1 AAGATTCACCGTTGTGGCTTTAAT-CTGTTTCA-CTGC-ATGCCAGGG-AAGT
* * * *
25063730 AAGATTCACCGATGTGGCTTTAATCTATTTCACTGCATCGCCTGGGGAGT
1 AAGATTCACCGTTGTGGCTTTAATCTGTTTCACTGCAT-GCCAGGGAAGT
* * * * *
25063780 AAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTG
1 AAGATTCACCGTTGTGGCTTTAATCTGTTTCACTG
25063815 TAATGTCGGG
Statistics
Matches: 183, Mismatches: 42, Indels: 20
0.75 0.17 0.08
Matches are distributed among these distances:
49 9 0.05
50 166 0.91
51 8 0.04
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (49 bp):
AAGATTCACCGTTGTGGCTTTAATCTGTTTCACTGCATGCCAGGGAAGT
Found at i:25065246 original size:7 final size:7
Alignment explanation
Indices: 25065227--25065269 Score: 63
Period size: 7 Copynumber: 6.3 Consensus size: 7
25065217 TTAGCCTCTC
25065227 CATTTTT
1 CATTTTT
25065234 -ACTTTTT
1 CA-TTTTT
25065241 CA-TTTT
1 CATTTTT
25065247 CATTTTT
1 CATTTTT
25065254 CATTTTT
1 CATTTTT
25065261 CATTTTT
1 CATTTTT
25065268 CA
1 CA
25065270 CCTTTTTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
6 7 0.21
7 25 0.76
8 1 0.03
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.67
Consensus pattern (7 bp):
CATTTTT
Found at i:25065250 original size:20 final size:20
Alignment explanation
Indices: 25065227--25065266 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
25065217 TTAGCCTCTC
25065227 CATTTTT-ACTTTTTCATTTT
1 CATTTTTCA-TTTTTCATTTT
25065247 CATTTTTCATTTTTCATTTT
1 CATTTTTCATTTTTCATTTT
25065267 TCACCTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 18 0.95
21 1 0.05
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.70
Consensus pattern (20 bp):
CATTTTTCATTTTTCATTTT
Found at i:25066235 original size:22 final size:19
Alignment explanation
Indices: 25066207--25066262 Score: 58
Period size: 22 Copynumber: 2.7 Consensus size: 19
25066197 TTGATTTTGA
*
25066207 TTTTGATTTTTCTTCTTTGTTT
1 TTTTGATTTTT-TT-TTT-ATT
25066229 TTTTGATTGATTTTTTTTATT
1 TTTTGATT--TTTTTTTTATT
25066250 TTTTGATTTTTTT
1 TTTTGATTTTTTT
25066263 GAGCTCATAG
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
19 5 0.16
21 10 0.32
22 11 0.35
23 2 0.06
24 3 0.10
ACGTcount: A:0.09, C:0.04, G:0.09, T:0.79
Consensus pattern (19 bp):
TTTTGATTTTTTTTTTATT
Found at i:25072490 original size:22 final size:23
Alignment explanation
Indices: 25072456--25072515 Score: 111
Period size: 23 Copynumber: 2.6 Consensus size: 23
25072446 ATGGGTAGGA
25072456 TGTTTTATAAAAATTTGCATGAT
1 TGTTTTATAAAAATTTGCATGAT
*
25072479 TTTTTTATAAAAATTTGCATGAT
1 TGTTTTATAAAAATTTGCATGAT
25072502 TGTTTTATAAAAAT
1 TGTTTTATAAAAAT
25072516 CGCATTCTGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.37, C:0.03, G:0.10, T:0.50
Consensus pattern (23 bp):
TGTTTTATAAAAATTTGCATGAT
Found at i:25081476 original size:27 final size:27
Alignment explanation
Indices: 25081445--25081622 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
25081435 TAAATTGTAC
25081445 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
25081472 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25081498 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
25081526 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
25081554 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25081581 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
25081608 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
25081623 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:25081559 original size:82 final size:81
Alignment explanation
Indices: 25081446--25081601 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
25081436 AAATTGTACA
* *
25081446 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
25081510 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
25081527 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
25081592 TGCGAGTTGA
65 TGCGAATTGA
25081602 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:25081613 original size:82 final size:81
Alignment explanation
Indices: 25081442--25081622 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
25081432 GATTAAATTG
* *
25081442 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
25081507 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
25081523 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
25081587 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
25081605 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
25081623 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:25089664 original size:27 final size:27
Alignment explanation
Indices: 25089633--25089810 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
25089623 TAAATTGTAC
25089633 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
25089660 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25089686 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
25089714 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
25089742 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25089769 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
25089796 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
25089811 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:25089747 original size:82 final size:81
Alignment explanation
Indices: 25089634--25089789 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
25089624 AAATTGTACA
* *
25089634 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
25089698 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
25089715 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
25089780 TGCGAGTTGA
65 TGCGAATTGA
25089790 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:25089801 original size:82 final size:81
Alignment explanation
Indices: 25089630--25089810 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
25089620 GATTAAATTG
* *
25089630 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
25089695 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
25089711 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
25089775 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
25089793 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
25089811 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:25091897 original size:39 final size:40
Alignment explanation
Indices: 25091790--25092013 Score: 314
Period size: 40 Copynumber: 5.7 Consensus size: 40
25091780 TTGAATGATA
*
25091790 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
*
25091830 TCCGGTCTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
25091870 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
25091909 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
25091948 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
25091987 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
25092014 AACGAGTAGC
Statistics
Matches: 172, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
39 75 0.44
40 97 0.56
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:25091964 original size:79 final size:79
Alignment explanation
Indices: 25091789--25092013 Score: 310
Period size: 79 Copynumber: 2.8 Consensus size: 79
25091779 TTTGAATGAT
* * * *
25091789 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTCCGGTCTAAGATCCGAAGGCATT
1 ATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGACCCGAAGGCATT
25091854 TGTGCGAGATACTAA
65 TGTGCGAGATACTAA
*
25091869 TTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTT
1 ATCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGACCCGAAGGCATTT
*
25091933 GTGCGAGTTACTAA
66 GTGCGAGATACTAA
* * * * *
25091947 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 ATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAGACCCGAAGGCAT
25092011 TTG
64 TTG
25092014 AACGAGTAGC
Statistics
Matches: 131, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
78 37 0.28
79 70 0.53
80 24 0.18
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
ATCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGATACTAA
Found at i:25092044 original size:79 final size:79
Alignment explanation
Indices: 25091803--25092046 Score: 262
Period size: 79 Copynumber: 3.1 Consensus size: 79
25091793 GGACTAAGAT
* * * ** *
25091803 CCGAAGGCATTTGTGCGAGATACTAATTCCGGTCTAAGATCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTACTA
* * *
25091868 ATTCCGGGCT-AAGC
65 AATCCGGGTTAAATC
* **
25091882 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
25091947 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
25091961 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* * *
25092024 TATATTC-GGTTAAATT
63 TAAATCCGGGTTAAATC
25092040 CCGAAGG
1 CCGAAGG
25092047 TACGTGATTT
Statistics
Matches: 145, Mismatches: 16, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
78 34 0.23
79 87 0.60
80 24 0.17
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:25096953 original size:26 final size:27
Alignment explanation
Indices: 25096879--25097250 Score: 262
Period size: 27 Copynumber: 13.9 Consensus size: 27
25096869 TAATGGGACC
** *
25096879 GAAATACCAACGAAGGGTAAAATTACC
1 GAAATACCCTCGAAGGGTAAAATTACT
* *
25096906 GAAATATCCTTGAAGGGTAAAATTACT
1 GAAATACCCTCGAAGGGTAAAATTACT
* *
25096933 GAAA-ACTCTCGAAGGGTAAAATTACC
1 GAAATACCCTCGAAGGGTAAAATTACT
* *
25096959 AAAATACCCTTGAAGGGTAAAATTACT
1 GAAATACCCTCGAAGGGTAAAATTACT
* *
25096986 AAAATACCC-CGAAAGGTAAAATTA-T
1 GAAATACCCTCGAAGGGTAAAATTACT
*
25097011 CGAAATACCCTCGAAGGGTAAAATTACC
1 -GAAATACCCTCGAAGGGTAAAATTACT
* * *
25097039 AAAATATCCCT-GAATGGTAAAATGA-T
1 GAAATA-CCCTCGAAGGGTAAAATTACT
* *
25097065 CAAAATACCCTTGAAGGGTAAAATGT-CT
1 -GAAATACCCTCGAAGGGTAAAAT-TACT
* * * *
25097093 AAAATACCCCCGAAAGGTAAAATAACT
1 GAAATACCCTCGAAGGGTAAAATTACT
* * *
25097120 AAAATACCC-CTATAGGGTAAAATTACC
1 GAAATACCCTCGA-AGGGTAAAATTACT
* * * * *
25097147 AAAATATCCCT-AAATGGTAAAATGACC
1 GAAATA-CCCTCGAAGGGTAAAATTACT
* * *
25097174 AAAATACCCCCAAAGGGTAAAATGT-CT
1 GAAATACCCTCGAAGGGTAAAAT-TACT
* * * *
25097201 GAAATACCCCCGAAGGATAAAATGACC
1 GAAATACCCTCGAAGGGTAAAATTACT
25097228 GAAATATCCCT--ATAGGGTAAAAT
1 GAAATA-CCCTCGA-AGGGTAAAAT
25097251 AACCTTTATA
Statistics
Matches: 281, Mismatches: 46, Indels: 36
0.77 0.13 0.10
Matches are distributed among these distances:
25 1 0.00
26 52 0.19
27 216 0.77
28 12 0.04
ACGTcount: A:0.45, C:0.19, G:0.16, T:0.21
Consensus pattern (27 bp):
GAAATACCCTCGAAGGGTAAAATTACT
Found at i:25097081 original size:54 final size:53
Alignment explanation
Indices: 25096894--25097250 Score: 316
Period size: 54 Copynumber: 6.7 Consensus size: 53
25096884 ACCAACGAAG
* * * * * *
25096894 GGTAAAATTACCGAAATATCCTTGAAGGGTAAAATTACTGAAA-ACTCTCGAAG
1 GGTAAAATGACCAAAATACCCTTGAAGGGTAAAATTACTAAAATACCCT-GAAA
* *
25096947 GGTAAAATTACCAAAATACCCTTGAAGGGTAAAATTACTAAAATACCCCGAAA
1 GGTAAAATGACCAAAATACCCTTGAAGGGTAAAATTACTAAAATACCCTGAAA
* * * * * *
25097000 GGTAAAATTATCGAAATACCCTCGAAGGGTAAAATTACCAAAATATCCCTGAAT
1 GGTAAAATGACCAAAATACCCTTGAAGGGTAAAATTACTAAAATA-CCCTGAAA
* *
25097054 GGTAAAATGATCAAAATACCCTTGAAGGGTAAAATGT-CTAAAATACCCCCGAAA
1 GGTAAAATGACCAAAATACCCTTGAAGGGTAAAAT-TACTAAAATA-CCCTGAAA
* * * *
25097108 GGTAAAATAACTAAAATACCCCT-ATAGGGTAAAATTACCAAAATATCCCT-AAA
1 GGTAAAATGACCAAAATACCCTTGA-AGGGTAAAATTACTAAAATA-CCCTGAAA
*** * *
25097161 TGGTAAAATGACCAAAATACCCCCAAAGGGTAAAATGT-CTGAAATACCCCCG-AA
1 -GGTAAAATGACCAAAATACCCTTGAAGGGTAAAAT-TACTAAAATA-CCCTGAAA
*
25097215 GGATAAAATGACCGAAATATCCC-T-ATAGGGTAAAAT
1 GG-TAAAATGACCAAAATA-CCCTTGA-AGGGTAAAAT
25097251 AACCTTTATA
Statistics
Matches: 257, Mismatches: 35, Indels: 23
0.82 0.11 0.07
Matches are distributed among these distances:
53 92 0.36
54 159 0.62
55 6 0.02
ACGTcount: A:0.45, C:0.18, G:0.15, T:0.22
Consensus pattern (53 bp):
GGTAAAATGACCAAAATACCCTTGAAGGGTAAAATTACTAAAATACCCTGAAA
Found at i:25097152 original size:108 final size:108
Alignment explanation
Indices: 25096947--25097250 Score: 420
Period size: 108 Copynumber: 2.8 Consensus size: 108
25096937 ACTCTCGAAG
* *
25096947 GGTAAAATTACCAAAATACCCTTGAAGGGTAAAAT-TACTAAAATA-CCCCGAAAGGTAAAATTA
1 GGTAAAATGACCAAAATACCCTTGAAGGGTAAAATGT-CTAAAATACCCCCGAAAGGTAAAATAA
* *
25097010 -TCGAAATACCCTCGA-AGGGTAAAATTACCAAAATATCCCTGAAT
65 CT-GAAATACCC-CTATAGGGTAAAATTACCAAAATATCCCTAAAT
*
25097054 GGTAAAATGATCAAAATACCCTTGAAGGGTAAAATGTCTAAAATACCCCCGAAAGGTAAAATAAC
1 GGTAAAATGACCAAAATACCCTTGAAGGGTAAAATGTCTAAAATACCCCCGAAAGGTAAAATAAC
*
25097119 TAAAATACCCCTATAGGGTAAAATTACCAAAATATCCCTAAAT
66 TGAAATACCCCTATAGGGTAAAATTACCAAAATATCCCTAAAT
*** * *
25097162 GGTAAAATGACCAAAATACCCCCAAAGGGTAAAATGTCTGAAATACCCCCG-AAGGATAAAATGA
1 GGTAAAATGACCAAAATACCCTTGAAGGGTAAAATGTCTAAAATACCCCCGAAAGG-TAAAATAA
* *
25097226 CCGAAATATCCCTATAGGGTAAAAT
65 CTGAAATACCCCTATAGGGTAAAAT
25097251 AACCTTTATA
Statistics
Matches: 177, Mismatches: 15, Indels: 9
0.88 0.07 0.04
Matches are distributed among these distances:
107 47 0.27
108 129 0.73
109 1 0.01
ACGTcount: A:0.45, C:0.19, G:0.15, T:0.21
Consensus pattern (108 bp):
GGTAAAATGACCAAAATACCCTTGAAGGGTAAAATGTCTAAAATACCCCCGAAAGGTAAAATAAC
TGAAATACCCCTATAGGGTAAAATTACCAAAATATCCCTAAAT
Found at i:25097386 original size:32 final size:32
Alignment explanation
Indices: 25097345--25097410 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
25097335 TACTGAGTAC
*
25097345 GACATACTACATACACGTATGGTTTATGACAT
1 GACATACTACATACACGTATGATTTATGACAT
25097377 GACATACTACATACACGTATGATTTATGACAT
1 GACATACTACATACACGTATGATTTATGACAT
25097409 GA
1 GA
25097411 GATTCTGATA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.30
Consensus pattern (32 bp):
GACATACTACATACACGTATGATTTATGACAT
Found at i:25097469 original size:27 final size:26
Alignment explanation
Indices: 25097437--25097493 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 26
25097427 AAGTATACTA
*
25097437 TACTGGTGGCTATGCCACATATACTGT
1 TACTGGTAGCTATGCCACAT-TACTGT
* **
25097464 TACTGGTAGCTTTGTTACATTACTGT
1 TACTGGTAGCTATGCCACATTACTGT
25097490 TACT
1 TACT
25097494 CGCAGCTTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 10 0.38
27 16 0.62
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.40
Consensus pattern (26 bp):
TACTGGTAGCTATGCCACATTACTGT
Found at i:25097500 original size:26 final size:26
Alignment explanation
Indices: 25097453--25097531 Score: 86
Period size: 26 Copynumber: 3.0 Consensus size: 26
25097443 TGGCTATGCC
* * *
25097453 ACATATACTGTTACTGGTAGCTTTGTT
1 ACAT-TACTGTTACTAGCAGCTTTGCT
*
25097480 ACATTACTGTTACTCGCAGCTTTGCT
1 ACATTACTGTTACTAGCAGCTTTGCT
* * *
25097506 GCATTATTATTACTAGCAGCTTTGCT
1 ACATTACTGTTACTAGCAGCTTTGCT
25097532 GTGATATTAG
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
26 41 0.91
27 4 0.09
ACGTcount: A:0.22, C:0.20, G:0.16, T:0.42
Consensus pattern (26 bp):
ACATTACTGTTACTAGCAGCTTTGCT
Found at i:25097685 original size:28 final size:28
Alignment explanation
Indices: 25097640--25097733 Score: 127
Period size: 28 Copynumber: 3.4 Consensus size: 28
25097630 ACTACATTGT
*
25097640 ACTGATTACTGTACTGGGCTAAGGCCCAC
1 ACTG-TTACTGTAATGGGCTAAGGCCCAC
* * *
25097669 ATTGTTACTATATTGGGCTAAGGCCCAC
1 ACTGTTACTGTAATGGGCTAAGGCCCAC
*
25097697 ACTGTTACTGTAATGGGCTGAGGCCCAC
1 ACTGTTACTGTAATGGGCTAAGGCCCAC
25097725 ACTG-TACTG
1 ACTGTTACTG
25097734 GTACTGGATA
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 5 0.09
28 50 0.86
29 3 0.05
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.28
Consensus pattern (28 bp):
ACTGTTACTGTAATGGGCTAAGGCCCAC
Found at i:25098542 original size:16 final size:17
Alignment explanation
Indices: 25098521--25098553 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
25098511 TAGTTAGAGT
25098521 AAACT-GAAACTGTAGG
1 AAACTGGAAACTGTAGG
*
25098537 AAACTGGAAATTGTAGG
1 AAACTGGAAACTGTAGG
25098554 GAGACTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.42, C:0.09, G:0.27, T:0.21
Consensus pattern (17 bp):
AAACTGGAAACTGTAGG
Found at i:25104764 original size:27 final size:26
Alignment explanation
Indices: 25104736--25104918 Score: 179
Period size: 27 Copynumber: 6.8 Consensus size: 26
25104726 AATGGGACCG
* * *
25104736 AAATACGCTCGAAGGGTAAAATTATCG
1 AAATACCCTCAAAGGGTAAAATTA-CA
25104763 AAATACCCTCAAAGGGTAAAATTACCA
1 AAATACCCTCAAAGGGTAAAATTA-CA
* * *
25104790 AAATACCTTCAAAAGATAAAATTACTA
1 AAATACCCTCAAAGGGTAAAATTAC-A
* * *
25104817 AAATACCC-CGAAGGGTAAAATGATCG
1 AAATACCCTCAAAGGGTAAAATTA-CA
25104843 AAATACCCTCAAAGGGTAAAATTACAA
1 AAATACCCTCAAAGGGTAAAATTAC-A
* * **
25104870 AAATACCCTCGAATGGTAAAAGGACCA
1 AAATACCCTCAAAGGGTAAAATTA-CA
*
25104897 AAATACCTTCAAAGGGTAAAAT
1 AAATACCCTCAAAGGGTAAAAT
25104919 GTCTGAAATA
Statistics
Matches: 127, Mismatches: 24, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
26 21 0.17
27 105 0.83
28 1 0.01
ACGTcount: A:0.48, C:0.18, G:0.15, T:0.20
Consensus pattern (26 bp):
AAATACCCTCAAAGGGTAAAATTACA
Found at i:25104821 original size:54 final size:54
Alignment explanation
Indices: 25104747--25104949 Score: 225
Period size: 54 Copynumber: 3.8 Consensus size: 54
25104737 AATACGCTCG
* *
25104747 AAGGGTAAAATTA-TCGAAATACCCTCAAAGGGTAAAATTACCAAAATACCTTCA
1 AAGGGTAAAATTACT-AAAATACCCTCAAAGGGTAAAATGACCAAAATACCTTCA
* * * * * *
25104801 AAAGATAAAATTACTAAAATACCC-CGAAGGGTAAAATGATCGAAATACCCTCA
1 AAGGGTAAAATTACTAAAATACCCTCAAAGGGTAAAATGACCAAAATACCTTCA
* * * *
25104854 AAGGGTAAAATTACAAAAATACCCTCGAATGGTAAAAGGACCAAAATACCTTCA
1 AAGGGTAAAATTACTAAAATACCCTCAAAGGGTAAAATGACCAAAATACCTTCA
* *
25104908 AAGGGTAAAATGT-CTGAAATATCCCT-ATAGGGTAAAATGACC
1 AAGGGTAAAAT-TACTAAAATA-CCCTCAAAGGGTAAAATGACC
25104950 GTTATACCCC
Statistics
Matches: 123, Mismatches: 22, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
53 45 0.37
54 72 0.59
55 6 0.05
ACGTcount: A:0.46, C:0.18, G:0.15, T:0.21
Consensus pattern (54 bp):
AAGGGTAAAATTACTAAAATACCCTCAAAGGGTAAAATGACCAAAATACCTTCA
Found at i:25104890 original size:80 final size:80
Alignment explanation
Indices: 25104730--25104945 Score: 265
Period size: 80 Copynumber: 2.7 Consensus size: 80
25104720 GGCCGTAATG
* * *
25104730 GGACCGAAATACGCTCGAAGGGTAAAATTATCGAAATACCCTCAAAGGGTAAAATTACCAAAATA
1 GGACCAAAATAC-CTCGAAGGGTAAAATGATCGAAATACCCTCAAAGGGTAAAATTACAAAAATA
*
25104795 CCTTCAAAAGATAAAA
65 CCCTCAAAAGATAAAA
** * *
25104811 TTACTAAAATACCCCGAAGGGTAAAATGATCGAAATACCCTCAAAGGGTAAAATTACAAAAATAC
1 GGACCAAAATACCTCGAAGGGTAAAATGATCGAAATACCCTCAAAGGGTAAAATTACAAAAATAC
* * *
25104876 CCTCGAATGGTAAAA
66 CCTCAAAAGATAAAA
* *
25104891 GGACCAAAATACCTTCAAAGGGTAAAATG-TCTGAAATATCCCT-ATAGGGTAAAAT
1 GGACCAAAATACC-TCGAAGGGTAAAATGATC-GAAATA-CCCTCAAAGGGTAAAAT
25104946 GACCGTTATA
Statistics
Matches: 115, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
80 73 0.63
81 38 0.33
82 4 0.03
ACGTcount: A:0.45, C:0.18, G:0.16, T:0.20
Consensus pattern (80 bp):
GGACCAAAATACCTCGAAGGGTAAAATGATCGAAATACCCTCAAAGGGTAAAATTACAAAAATAC
CCTCAAAAGATAAAA
Found at i:25104927 original size:27 final size:26
Alignment explanation
Indices: 25104736--25104945 Score: 147
Period size: 27 Copynumber: 7.8 Consensus size: 26
25104726 AATGGGACCG
* * * *
25104736 AAATACGCTCGAAGGGTAAAATTATCG
1 AAATACCCTCAAAGGGTAAAATTCT-A
*
25104763 AAATACCCTCAAAGGGTAAAATTACCA
1 AAATACCCTCAAAGGGTAAAATT-CTA
* * *
25104790 AAATACCTTCAAAAGATAAAATTACTA
1 AAATACCCTCAAAGGGTAAAATT-CTA
* *
25104817 AAATACCC-CGAAGGGTAAAATGATC-G
1 AAATACCCTCAAAGGGTAAAAT--TCTA
*
25104843 AAATACCCTCAAAGGGTAAAATTACAA
1 AAATACCCTCAAAGGGTAAAATT-CTA
* * ** *
25104870 AAATACCCTCGAATGGTAAAAGGACCA
1 AAATACCCTCAAAGGGTAAAA-TTCTA
* *
25104897 AAATACCTTCAAAGGGTAAAATGTCTG
1 AAATACCCTCAAAGGGTAAAAT-TCTA
*
25104924 AAATATCCCT-ATAGGGTAAAAT
1 AAATA-CCCTCAAAGGGTAAAAT
25104946 GACCGTTATA
Statistics
Matches: 144, Mismatches: 30, Indels: 18
0.75 0.16 0.09
Matches are distributed among these distances:
25 1 0.01
26 19 0.13
27 120 0.83
28 4 0.03
ACGTcount: A:0.46, C:0.18, G:0.15, T:0.21
Consensus pattern (26 bp):
AAATACCCTCAAAGGGTAAAATTCTA
Found at i:25105343 original size:28 final size:28
Alignment explanation
Indices: 25105295--25105382 Score: 140
Period size: 28 Copynumber: 3.1 Consensus size: 28
25105285 ACTATATTGT
*
25105295 ACTGATTACTGTATTGAGCTAAGGCCCAC
1 ACTG-TTACTGTATTGGGCTAAGGCCCAC
*
25105324 ATTGTTACTGTATTGGGCTAAGGCCCAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
*
25105352 ACTGTTACTGTAATGGGCTAAGGCCCAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
25105380 ACT
1 ACT
25105383 ATACTGATAC
Statistics
Matches: 55, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
28 52 0.95
29 3 0.05
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (28 bp):
ACTGTTACTGTATTGGGCTAAGGCCCAC
Found at i:25108131 original size:23 final size:23
Alignment explanation
Indices: 25108101--25108218 Score: 175
Period size: 23 Copynumber: 5.2 Consensus size: 23
25108091 AGTGTCATAG
*
25108101 TGATATGTAGTCGAAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
*
25108124 TGATATGTAGCCGTAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
*
25108147 TGA-ATGTAGCTGAAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
* *
25108169 TAATATGTAGCCGTAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
*
25108192 TGAAATGTAGCCGAAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
25108215 TGAT
1 TGAT
25108219 CAATAACACT
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
22 19 0.23
23 64 0.77
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.25
Consensus pattern (23 bp):
TGATATGTAGCCGAAGCTACCAC
Done.