Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 89 of 196
Found at i:25726418 original size:22 final size:22
Alignment explanation
Indices: 25726388--25726431 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
25726378 TTTGGTATTT
25726388 GGGAATTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
*
25726410 GGGATTTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
25726432 TGGTTCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.36, T:0.25
Consensus pattern (22 bp):
GGGAATTGGTACGAAATGGTAA
Found at i:25728516 original size:56 final size:56
Alignment explanation
Indices: 25728411--25728517 Score: 144
Period size: 56 Copynumber: 1.9 Consensus size: 56
25728401 ATTAATACCG
* * * * *
25728411 TCCATGCATGGTGAATATATCATTTAATTCATGTTTTGCTTCCCTTTAAATGCCGT
1 TCCATACATGGTGAACATATCATTTAATTCATGTTTTGCTGCACATTAAATGCCGT
*
25728467 TCCATACATGG-GAACATGTCATTTAATTCATGTCTTTGCTGCACATTAAAT
1 TCCATACATGGTGAACATATCATTTAATTCATGT-TTTGCTGCACATTAAAT
25728518 CAGCAAGCAG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
55 20 0.45
56 24 0.55
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.40
Consensus pattern (56 bp):
TCCATACATGGTGAACATATCATTTAATTCATGTTTTGCTGCACATTAAATGCCGT
Found at i:25729166 original size:20 final size:20
Alignment explanation
Indices: 25729141--25729195 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
25729131 ACGAGTTAAA
* *
25729141 TTGAGCTTGAATGAGCTGAC
1 TTGAGCTCGAATGAGCTAAC
*
25729161 TTGAGCACGAATGAGCTAAC
1 TTGAGCTCGAATGAGCTAAC
25729181 TTGAGCTCGAATGAG
1 TTGAGCTCGAATGAG
25729196 TTGAACCACA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (20 bp):
TTGAGCTCGAATGAGCTAAC
Found at i:25730109 original size:16 final size:15
Alignment explanation
Indices: 25730083--25730112 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
25730073 TTTTAATCCA
25730083 TCATCCCAATCAAAG
1 TCATCCCAATCAAAG
25730098 TCATCACCAATCAAA
1 TCATC-CCAATCAAA
25730113 AATTGATACT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.33, G:0.03, T:0.20
Consensus pattern (15 bp):
TCATCCCAATCAAAG
Found at i:25731655 original size:13 final size:11
Alignment explanation
Indices: 25731641--25731681 Score: 73
Period size: 11 Copynumber: 3.7 Consensus size: 11
25731631 AATACAAATT
25731641 TTTTTTTTGAA
1 TTTTTTTTGAA
25731652 TTTTTTTTGAA
1 TTTTTTTTGAA
*
25731663 TTTTTTTTCAA
1 TTTTTTTTGAA
25731674 TTTTTTTT
1 TTTTTTTT
25731682 TTCCTTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.15, C:0.02, G:0.05, T:0.78
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:25731692 original size:13 final size:13
Alignment explanation
Indices: 25731637--25731684 Score: 50
Period size: 11 Copynumber: 4.0 Consensus size: 13
25731627 ATTGAATACA
*
25731637 AATTTTTTTTTTG
1 AATTTTTTTTTTC
*
25731650 AA--TTTTTTTTG
1 AATTTTTTTTTTC
25731661 AA--TTTTTTTTC
1 AATTTTTTTTTTC
25731672 AATTTTTTTTTTC
1 AATTTTTTTTTTC
25731685 CTTTTTTTAC
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
11 21 0.66
13 11 0.34
ACGTcount: A:0.17, C:0.04, G:0.04, T:0.75
Consensus pattern (13 bp):
AATTTTTTTTTTC
Found at i:25733261 original size:20 final size:20
Alignment explanation
Indices: 25733238--25733283 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
25733228 GGGTTAAGAT
*
25733238 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
25733258 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
25733278 TGAGCT
1 TGAGCT
25733284 AGAAACGAGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.22, C:0.13, G:0.35, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:25734256 original size:56 final size:55
Alignment explanation
Indices: 25734140--25734257 Score: 150
Period size: 55 Copynumber: 2.1 Consensus size: 55
25734130 TGCATGCTTT
* * * *
25734140 CATT-AATGCCGTCCATGCATGGTGAATATATCATTTAATTCATGTTTTGCTTCC
1 CATTAAATGCCGTCCATACATGGTGAACATATCATTTAATTCATGTTTTGCTGCA
* *
25734194 CTTTAAATGCCGTTCCATACATGG-GAACATCTCATTTAATTCATGTCTTTGCTGCA
1 CATTAAATGCCG-TCCATACATGGTGAACATATCATTTAATTCATGT-TTTGCTGCA
25734250 CATTAAAT
1 CATTAAAT
25734258 CAGCAAGCAG
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
54 3 0.06
55 27 0.50
56 24 0.44
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.39
Consensus pattern (55 bp):
CATTAAATGCCGTCCATACATGGTGAACATATCATTTAATTCATGTTTTGCTGCA
Found at i:25734906 original size:20 final size:20
Alignment explanation
Indices: 25734881--25734935 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
25734871 ACGAGTTAAA
* *
25734881 TTGAGCTTGAATGAGCTGAC
1 TTGAGCTCGAATGAGCTAAC
*
25734901 TTGAGCACGAATGAGCTAAC
1 TTGAGCTCGAATGAGCTAAC
25734921 TTGAGCTCGAATGAG
1 TTGAGCTCGAATGAG
25734936 TTGAACCACA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (20 bp):
TTGAGCTCGAATGAGCTAAC
Found at i:25735579 original size:12 final size:12
Alignment explanation
Indices: 25735562--25735586 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25735552 CCTTATACAC
25735562 ATTACACATTGA
1 ATTACACATTGA
25735574 ATTACACATTGA
1 ATTACACATTGA
25735586 A
1 A
25735587 ATCAGATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (12 bp):
ATTACACATTGA
Found at i:25737328 original size:37 final size:37
Alignment explanation
Indices: 25737255--25737333 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
25737245 TTATTACGAA
* * * * *
25737255 GTCTTACCTAGACATAATCTCCACCCGAAGTTATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
* *
25737292 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
25737329 GTCTT
1 GTCTT
25737334 TAGAGCTCGG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
Found at i:25737530 original size:47 final size:47
Alignment explanation
Indices: 25737452--25737939 Score: 715
Period size: 47 Copynumber: 10.1 Consensus size: 47
25737442 CCCTTCGGGA
* * * * * *
25737452 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
25737499 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
25737546 CCTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25737593 CTTATCACATATATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25737644 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
25737691 CCTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25737738 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
25737789 CCTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25737836 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25737887 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25737936 CTTA
1 CTTA
25737940 CTATCATTTC
Statistics
Matches: 407, Mismatches: 22, Indels: 22
0.90 0.05 0.05
Matches are distributed among these distances:
47 226 0.56
49 45 0.11
51 136 0.33
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:25737650 original size:98 final size:94
Alignment explanation
Indices: 25737452--25737939 Score: 724
Period size: 98 Copynumber: 5.0 Consensus size: 94
25737442 CCCTTCGGGA
* * * * * * *
25737452 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
25737517 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
25737546 CCTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCAC----ATATAT
*
25737611 ATACTTTCACATTCATCACATCGGCCATTAGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
25737644 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACGTATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
25737709 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
25737738 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACGTATAT
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATAT
25737803 ACACTTTCACATTCATCACATCGGCCATTAGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
25737836 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCAC--ATAT
25737901 ATACACTTTCACATTCATCACATCGGCCATTAGGC
60 ATACACTTTCACATTCATCACATCGGCCATTAGGC
25737936 CTTA
1 CTTA
25737940 CTATCATTTC
Statistics
Matches: 366, Mismatches: 18, Indels: 14
0.92 0.05 0.04
Matches are distributed among these distances:
94 90 0.25
98 234 0.64
100 42 0.11
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:25737731 original size:145 final size:145
Alignment explanation
Indices: 25737463--25737936 Score: 799
Period size: 145 Copynumber: 3.3 Consensus size: 145
25737453 TTATCACATT
* * * * * *
25737463 TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACACTTTCACATTCA
25737528 TCACATCGGCCATTAGGCCCTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
66 TCACATCGGCCATTAGGCCCTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
25737593 CTTATCACATATATA
131 CTTATCACATATATA
* *
25737608 TATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACACTTTCACATTCA
25737673 TCACATCGGCCATTAGGCCCTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
66 TCACATCGGCCATTAGGCCCTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
25737738 CTTATCACATATATA
131 CTTATCACATATATA
*
25737753 TATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACGTATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACACTTTCACATTCA
* *
25737818 TCACATCGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATT
66 TCACATCGGCCATTAGGCCCTATCAC----GTATATACACTTTCACATTCATCACATCGGCCATT
25737883 AGGCCTTATCAC--ATATA
127 AGGCCTTATCACATATATA
25737900 TATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCC
25737937 TTACTATCAT
Statistics
Matches: 312, Mismatches: 13, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
145 224 0.72
147 42 0.13
149 46 0.15
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.31
Consensus pattern (145 bp):
TATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACACTTTCACATTCA
TCACATCGGCCATTAGGCCCTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
CTTATCACATATATA
Found at i:25745211 original size:12 final size:12
Alignment explanation
Indices: 25745194--25745233 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
25745184 CTTTTTTCAC
*
25745194 TTTTTTGACCTT
1 TTTTTTGAACTT
*
25745206 TTTTTTGAATTT
1 TTTTTTGAACTT
25745218 TTTTTTGAA-TT
1 TTTTTTGAACTT
25745229 TTTTT
1 TTTTT
25745234 AAACTTCGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
11 7 0.27
12 19 0.73
ACGTcount: A:0.12, C:0.05, G:0.07, T:0.75
Consensus pattern (12 bp):
TTTTTTGAACTT
Found at i:25745244 original size:29 final size:29
Alignment explanation
Indices: 25745212--25745311 Score: 103
Period size: 31 Copynumber: 3.3 Consensus size: 29
25745202 CCTTTTTTTT
* *
25745212 GAATTTTTTTTTGAATTTTTTTAAACTTC
1 GAATTTTTTTTTCAATTTTTTTAAATTTC
25745241 GAA-TTTTTTTTCAATTTTTTTTCAAATTCTC
1 GAATTTTTTTTTCAA-TTTTTTT-AAATT-TC
** * *
25745272 TCACTTTTTTTTCAATTTTTTTATAATTTT
1 GAATTTTTTTTTCAATTTTTTTA-AATTTC
25745302 GAATTTTTTT
1 GAATTTTTTT
25745312 ATCCTCCAAT
Statistics
Matches: 58, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
28 10 0.17
29 10 0.17
30 13 0.22
31 14 0.24
32 11 0.19
ACGTcount: A:0.22, C:0.09, G:0.04, T:0.65
Consensus pattern (29 bp):
GAATTTTTTTTTCAATTTTTTTAAATTTC
Found at i:25745301 original size:11 final size:11
Alignment explanation
Indices: 25745242--25745293 Score: 61
Period size: 11 Copynumber: 4.8 Consensus size: 11
25745232 TTAAACTTCG
25745242 AATTTTTTTTC
1 AATTTTTTTTC
25745253 AATTTTTTTTC
1 AATTTTTTTTC
* * *
25745264 AA-ATTCTCTC
1 AATTTTTTTTC
*
25745274 ACTTTTTTTTC
1 AATTTTTTTTC
25745285 AATTTTTTT
1 AATTTTTTT
25745294 ATAATTTTGA
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
10 6 0.19
11 26 0.81
ACGTcount: A:0.19, C:0.13, G:0.00, T:0.67
Consensus pattern (11 bp):
AATTTTTTTTC
Found at i:25746177 original size:20 final size:20
Alignment explanation
Indices: 25746152--25746196 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
25746142 TAAATACACA
25746152 TAATTAAAACT-AGACACAAT
1 TAATT-AAACTAAGACACAAT
**
25746172 TAATTAAGTTAAGACACAAT
1 TAATTAAACTAAGACACAAT
25746192 TAATT
1 TAATT
25746197 CGGTTGGACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 3 0.14
20 19 0.86
ACGTcount: A:0.51, C:0.11, G:0.07, T:0.31
Consensus pattern (20 bp):
TAATTAAACTAAGACACAAT
Found at i:25750655 original size:11 final size:11
Alignment explanation
Indices: 25750632--25750673 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
25750622 TAGTTTCTCG
*
25750632 AAAAAAAACTC
1 AAAAAAAATTC
*
25750643 AACAAAAATTC
1 AAAAAAAATTC
25750654 AAAAAAAATT-
1 AAAAAAAATTC
25750664 AAAAAAAATT
1 AAAAAAAATT
25750674 TGGTTTCCAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
10 10 0.36
11 18 0.64
ACGTcount: A:0.74, C:0.10, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAAAAAATTC
Found at i:25750734 original size:16 final size:16
Alignment explanation
Indices: 25750713--25750767 Score: 101
Period size: 16 Copynumber: 3.4 Consensus size: 16
25750703 TATCAAGTTG
25750713 AAAAAAAAATTCGTGA
1 AAAAAAAAATTCGTGA
25750729 AAAAAAAAATTCGTGA
1 AAAAAAAAATTCGTGA
*
25750745 AAAAAAAATTTCGTGA
1 AAAAAAAAATTCGTGA
25750761 AAAAAAA
1 AAAAAAA
25750768 GAAGAAGCTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.65, C:0.05, G:0.11, T:0.18
Consensus pattern (16 bp):
AAAAAAAAATTCGTGA
Found at i:25752248 original size:17 final size:17
Alignment explanation
Indices: 25752226--25752262 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
25752216 GAAGAGTTGT
25752226 TCATAAACCTGACAAAG
1 TCATAAACCTGACAAAG
25752243 TCATAAACCTGACAAAG
1 TCATAAACCTGACAAAG
25752260 TCA
1 TCA
25752263 CTTTCAAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.46, C:0.24, G:0.11, T:0.19
Consensus pattern (17 bp):
TCATAAACCTGACAAAG
Found at i:25753635 original size:19 final size:18
Alignment explanation
Indices: 25753599--25753638 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
25753589 TTTCCACTCG
*
25753599 TTTCTTTTTCAACTTCTC
1 TTTCTTTTTCAACATCTC
*
25753617 TTTCTTTTTCCACAATCTC
1 TTTCTTTTTCAAC-ATCTC
25753636 TTT
1 TTT
25753639 GTTTGTTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.12, C:0.28, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTCTTTTTCAACATCTC
Found at i:25756277 original size:27 final size:27
Alignment explanation
Indices: 25756245--25756299 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
25756235 CTAGCTCTCT
25756245 TTTTTTTATCAAATTTTTTTTTTCACAA
1 TTTTTTTATCAAA-TTTTTTTTTCACAA
*
25756273 TTTTTTTTTCAAATTTTTTTTTCACAA
1 TTTTTTTATCAAATTTTTTTTTCACAA
25756300 CTTGATATCC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 14 0.54
28 12 0.46
ACGTcount: A:0.24, C:0.11, G:0.00, T:0.65
Consensus pattern (27 bp):
TTTTTTTATCAAATTTTTTTTTCACAA
Found at i:25756293 original size:13 final size:13
Alignment explanation
Indices: 25756244--25756296 Score: 79
Period size: 14 Copynumber: 3.8 Consensus size: 13
25756234 ACTAGCTCTC
25756244 TTTTTTTTATCAAA
1 TTTTTTTT-TCAAA
25756258 TTTTTTTTTTCACAA
1 -TTTTTTTTTCA-AA
25756273 TTTTTTTTTCAAA
1 TTTTTTTTTCAAA
25756286 TTTTTTTTTCA
1 TTTTTTTTTCA
25756297 CAACTTGATA
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
13 13 0.35
14 14 0.38
15 10 0.27
ACGTcount: A:0.21, C:0.09, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTTTTTTCAAA
Found at i:25756355 original size:13 final size:13
Alignment explanation
Indices: 25756337--25756382 Score: 67
Period size: 13 Copynumber: 3.5 Consensus size: 13
25756327 TGGAAACTAG
25756337 TTTTTTTTTTGAA
1 TTTTTTTTTTGAA
25756350 TTTTTTTTTTCGAA
1 TTTTTTTTTT-GAA
*
25756364 -TTTTTTTTTGAG
1 TTTTTTTTTTGAA
25756376 TTTTTTT
1 TTTTTTT
25756383 CGAGAAACTA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
12 2 0.07
13 25 0.83
14 3 0.10
ACGTcount: A:0.11, C:0.02, G:0.09, T:0.78
Consensus pattern (13 bp):
TTTTTTTTTTGAA
Found at i:25756356 original size:14 final size:14
Alignment explanation
Indices: 25756337--25756372 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
25756327 TGGAAACTAG
25756337 TTTTTTTTTT-GAA
1 TTTTTTTTTTCGAA
25756350 TTTTTTTTTTCGAA
1 TTTTTTTTTTCGAA
25756364 TTTTTTTTT
1 TTTTTTTTT
25756373 GAGTTTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.11, C:0.03, G:0.06, T:0.81
Consensus pattern (14 bp):
TTTTTTTTTTCGAA
Found at i:25759025 original size:11 final size:11
Alignment explanation
Indices: 25759009--25759050 Score: 57
Period size: 12 Copynumber: 3.6 Consensus size: 11
25758999 TTATAGATTC
25759009 AAAAAAAATCA
1 AAAAAAAATCA
25759020 AAAAAAAATCGA
1 AAAAAAAATC-A
*
25759032 AAAAAATAATTA
1 AAAAAA-AATCA
25759044 AAAAAAA
1 AAAAAAA
25759051 CAAATTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
11 11 0.39
12 14 0.50
13 3 0.11
ACGTcount: A:0.81, C:0.05, G:0.02, T:0.12
Consensus pattern (11 bp):
AAAAAAAATCA
Found at i:25759027 original size:13 final size:12
Alignment explanation
Indices: 25759009--25759050 Score: 50
Period size: 11 Copynumber: 3.5 Consensus size: 12
25758999 TTATAGATTC
25759009 AAAAAAAATC-A
1 AAAAAAAATCAA
25759020 AAAAAAAATCGAA
1 AAAAAAAATC-AA
* *
25759033 AAAAATAATTAA
1 AAAAAAAATCAA
25759045 AAAAAA
1 AAAAAA
25759051 CAAATTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
11 10 0.38
12 7 0.27
13 9 0.35
ACGTcount: A:0.81, C:0.05, G:0.02, T:0.12
Consensus pattern (12 bp):
AAAAAAAATCAA
Found at i:25759092 original size:14 final size:14
Alignment explanation
Indices: 25759073--25759100 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
25759063 AAAAAAAAAT
25759073 TGCATACGGTCTGG
1 TGCATACGGTCTGG
25759087 TGCATACGGTCTGG
1 TGCATACGGTCTGG
25759101 AGACACTTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.36, T:0.29
Consensus pattern (14 bp):
TGCATACGGTCTGG
Found at i:25765767 original size:35 final size:36
Alignment explanation
Indices: 25765723--25765791 Score: 113
Period size: 35 Copynumber: 1.9 Consensus size: 36
25765713 AAAAAAAGTC
*
25765723 AAAAAAAAATCAAAAAAAT-TTGAGTTGGAATTTAA
1 AAAAAAAAATCAAAAAAATCTCGAGTTGGAATTTAA
*
25765758 AAAAAAAAATCAAAAAAATCTCGAGTTGTAATTT
1 AAAAAAAAATCAAAAAAATCTCGAGTTGGAATTT
25765792 TATTTTATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
35 19 0.61
36 12 0.39
ACGTcount: A:0.58, C:0.06, G:0.10, T:0.26
Consensus pattern (36 bp):
AAAAAAAAATCAAAAAAATCTCGAGTTGGAATTTAA
Found at i:25765904 original size:19 final size:21
Alignment explanation
Indices: 25765864--25765917 Score: 69
Period size: 19 Copynumber: 2.6 Consensus size: 21
25765854 ATCGAAATTC
25765864 AAAA-AAAAAAAAGTGAGCAAA
1 AAAAGAAAAAAAAGTGA-CAAA
25765885 AAAAGAAAAAAAAGT-A-AAA
1 AAAAGAAAAAAAAGTGACAAA
25765904 AAAAGAACAAAAAA
1 AAAAGAA-AAAAAA
25765918 AAAGTGAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
19 10 0.32
20 6 0.19
21 5 0.16
22 10 0.32
ACGTcount: A:0.81, C:0.04, G:0.11, T:0.04
Consensus pattern (21 bp):
AAAAGAAAAAAAAGTGACAAA
Found at i:25765918 original size:22 final size:22
Alignment explanation
Indices: 25765864--25765927 Score: 69
Period size: 22 Copynumber: 2.9 Consensus size: 22
25765854 ATCGAAATTC
**
25765864 AAAA-AAAAAAAAGTGAGCAAA
1 AAAACAAAAAAAAGTGAAAAAA
*
25765885 AAAAGAAAAAAAAGT-AAAAAA
1 AAAACAAAAAAAAGTGAAAAAA
25765906 AAGAACAAAAAAAAAGTGAAAA
1 AA-AAC-AAAAAAAAGTGAAAA
25765928 GTCTTGTGAG
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
21 10 0.28
22 12 0.33
23 10 0.28
24 4 0.11
ACGTcount: A:0.80, C:0.03, G:0.12, T:0.05
Consensus pattern (22 bp):
AAAACAAAAAAAAGTGAAAAAA
Found at i:25765927 original size:10 final size:9
Alignment explanation
Indices: 25765882--25765917 Score: 54
Period size: 10 Copynumber: 3.8 Consensus size: 9
25765872 AAAAGTGAGC
25765882 AAAAAAAGA
1 AAAAAAAGA
25765891 AAAAAAAGTA
1 AAAAAAAG-A
25765901 AAAAAAAGA
1 AAAAAAAGA
25765910 ACAAAAAA
1 A-AAAAAA
25765918 AAAGTGAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 10 0.40
10 15 0.60
ACGTcount: A:0.86, C:0.03, G:0.08, T:0.03
Consensus pattern (9 bp):
AAAAAAAGA
Found at i:25772226 original size:23 final size:22
Alignment explanation
Indices: 25772174--25772226 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
25772164 TCCACGTCTT
*
25772174 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
25772196 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
25772219 TTTCTTTT
1 TTTCTTTT
25772227 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:25778050 original size:31 final size:34
Alignment explanation
Indices: 25778015--25778083 Score: 83
Period size: 35 Copynumber: 2.1 Consensus size: 34
25778005 AAACAATTAA
25778015 AATAAAT-AA-CTAAG-ATAA-ATAAAAATAAAAT
1 AATAAATAAATCTAAGAATAATA-AAAAATAAAAT
*
25778046 AATAAATCAAATCTTAGAATAATAAAAAATAAAAT
1 AATAAAT-AAATCTAAGAATAATAAAAAATAAAAT
25778081 AAT
1 AAT
25778084 GAAAATAGAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
31 7 0.22
33 2 0.06
34 4 0.12
35 18 0.56
36 1 0.03
ACGTcount: A:0.68, C:0.04, G:0.03, T:0.25
Consensus pattern (34 bp):
AATAAATAAATCTAAGAATAATAAAAAATAAAAT
Found at i:25783488 original size:17 final size:15
Alignment explanation
Indices: 25783457--25783490 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 15
25783447 CACACTAATC
25783457 TTCTTTTTCTTTCAT
1 TTCTTTTTCTTTCAT
25783472 TTCTTTTTCATTTTCAT
1 TTCTTTTTC--TTTCAT
25783489 TT
1 TT
25783491 TCTCGCTCGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 9 0.53
17 8 0.47
ACGTcount: A:0.09, C:0.18, G:0.00, T:0.74
Consensus pattern (15 bp):
TTCTTTTTCTTTCAT
Found at i:25784409 original size:18 final size:17
Alignment explanation
Indices: 25784387--25784420 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
25784377 GACCTCTTCT
25784387 TTTTTTTTAATTCTGAA
1 TTTTTTTTAATTCTGAA
*
25784404 TTTTTTTTACTTCTGAA
1 TTTTTTTTAATTCTGAA
25784421 ACTTCTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.09, G:0.06, T:0.65
Consensus pattern (17 bp):
TTTTTTTTAATTCTGAA
Found at i:25785621 original size:12 final size:13
Alignment explanation
Indices: 25785604--25785644 Score: 52
Period size: 12 Copynumber: 3.3 Consensus size: 13
25785594 TTAAACTAAG
25785604 TAAATAAAT-AAA
1 TAAATAAATAAAA
25785616 TAAATAAATAAAA
1 TAAATAAATAAAA
25785629 T-AA-AAATAAAAA
1 TAAATAAAT-AAAA
25785641 TAAA
1 TAAA
25785645 ACTTTACAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
11 4 0.15
12 16 0.62
13 6 0.23
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (13 bp):
TAAATAAATAAAA
Found at i:25787043 original size:23 final size:22
Alignment explanation
Indices: 25786991--25787043 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
25786981 TCCACGTCTT
*
25786991 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
25787013 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
25787036 TTTCTTTT
1 TTTCTTTT
25787044 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:25791382 original size:17 final size:17
Alignment explanation
Indices: 25791360--25791398 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
25791350 TGTAGTTTTT
25791360 GAAAAAAAAATTGAAAA
1 GAAAAAAAAATTGAAAA
25791377 GAAAAAAAAATTGAAAA
1 GAAAAAAAAATTGAAAA
25791394 -AAAAA
1 GAAAAA
25791399 TATATTGCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.79, C:0.00, G:0.10, T:0.10
Consensus pattern (17 bp):
GAAAAAAAAATTGAAAA
Found at i:25793659 original size:16 final size:17
Alignment explanation
Indices: 25793621--25793659 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
25793611 AAGAAGAAAA
25793621 ACAAAAAGATGAGTGAT
1 ACAAAAAGATGAGTGAT
*
25793638 AAAAAAAGA-GAGTGAT
1 ACAAAAAGATGAGTGAT
*
25793654 TCAAAA
1 ACAAAA
25793660 GAAAAAGAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.59, C:0.05, G:0.21, T:0.15
Consensus pattern (17 bp):
ACAAAAAGATGAGTGAT
Found at i:25808863 original size:15 final size:15
Alignment explanation
Indices: 25808851--25808890 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
25808841 AATTTAATAG
25808851 CTATGTTTTTAATTAA
1 CTATGTTTTTAATT-A
* *
25808867 TTATTTTTTTAATTA
1 CTATGTTTTTAATTA
25808882 CTATGTTTT
1 CTATGTTTT
25808891 GTTGCTTATA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.25, C:0.05, G:0.05, T:0.65
Consensus pattern (15 bp):
CTATGTTTTTAATTA
Found at i:25810380 original size:20 final size:19
Alignment explanation
Indices: 25810357--25810421 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 19
25810347 AAGCTCAAAC
25810357 GAGCTAAAGTAAGCTAAATT
1 GAGCTAAAGT-AGCTAAATT
25810377 GAGCTCAAACG-AGCTAAATT
1 GAGCT-AAA-GTAGCTAAATT
* * * *
25810397 AAGCTCATGTGAGCTAAATC
1 GAGCTAAAGT-AGCTAAATT
25810417 GAGCT
1 GAGCT
25810422 GGGAAAAACT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 30 0.83
21 3 0.08
22 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (19 bp):
GAGCTAAAGTAGCTAAATT
Found at i:25811689 original size:19 final size:19
Alignment explanation
Indices: 25811667--25811704 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
25811657 AACTAGCCAA
25811667 GGACAACTCAAGAGTCATT
1 GGACAACTCAAGAGTCATT
25811686 GGACAACTCAAGAGTCATT
1 GGACAACTCAAGAGTCATT
25811705 TTCTAAGCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (19 bp):
GGACAACTCAAGAGTCATT
Found at i:25812421 original size:23 final size:23
Alignment explanation
Indices: 25812391--25812436 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
25812381 TAGTAGTTTC
*
25812391 TTCAAAAAAAATTTGAAAAAAAA
1 TTCAAAAAAAAATTGAAAAAAAA
25812414 TTCAAAAAAAAATTGAAAAAAAA
1 TTCAAAAAAAAATTGAAAAAAAA
25812437 AATTTGGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.72, C:0.04, G:0.04, T:0.20
Consensus pattern (23 bp):
TTCAAAAAAAAATTGAAAAAAAA
Found at i:25812440 original size:13 final size:12
Alignment explanation
Indices: 25812394--25812437 Score: 63
Period size: 12 Copynumber: 3.8 Consensus size: 12
25812384 TAGTTTCTTC
*
25812394 AAAAAAAATTTG
1 AAAAAAAAATTG
*
25812406 -AAAAAAAATTC
1 AAAAAAAAATTG
25812417 AAAAAAAAATTG
1 AAAAAAAAATTG
25812429 AAAAAAAAA
1 AAAAAAAAA
25812438 ATTTGGTTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
11 9 0.32
12 19 0.68
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.16
Consensus pattern (12 bp):
AAAAAAAAATTG
Found at i:25812502 original size:17 final size:17
Alignment explanation
Indices: 25812480--25812519 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
25812470 TATCAAGTTG
25812480 AAAAAAAAATTTCGTGA
1 AAAAAAAAATTTCGTGA
25812497 AAAAAAAAATTTCGTGA
1 AAAAAAAAATTTCGTGA
25812514 AAAAAA
1 AAAAAA
25812520 GAAGAAGAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.65, C:0.05, G:0.10, T:0.20
Consensus pattern (17 bp):
AAAAAAAAATTTCGTGA
Found at i:25816434 original size:34 final size:33
Alignment explanation
Indices: 25816370--25816435 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
25816360 TTAAAGATGT
* *
25816370 TGTTCTACATGCATGGAACGGCAATTAATGAGA
1 TGTTCCACATGCATGGAACGACAATTAATGAGA
*
25816403 TGTTCCACATGCAATGG-ACGACATTTAAATGAG
1 TGTTCCACATGC-ATGGAACGACAATT-AATGAG
25816436 GGAGAGTGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 18 0.64
34 10 0.36
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (33 bp):
TGTTCCACATGCATGGAACGACAATTAATGAGA
Found at i:25818554 original size:18 final size:18
Alignment explanation
Indices: 25818499--25818557 Score: 73
Period size: 18 Copynumber: 3.2 Consensus size: 18
25818489 AGTGCGAGCG
25818499 AGAAAAAGAAATCAAAGAAA
1 AGAAAAAGAAATC-AA-AAA
* **
25818519 AGAAAAAGAGATTGAAAA
1 AGAAAAAGAAATCAAAAA
25818537 AGAAAAAGAAATCAAAAA
1 AGAAAAAGAAATCAAAAA
25818555 AGA
1 AGA
25818558 GTGAGGTCGA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
18 21 0.64
19 1 0.03
20 11 0.33
ACGTcount: A:0.73, C:0.03, G:0.17, T:0.07
Consensus pattern (18 bp):
AGAAAAAGAAATCAAAAA
Found at i:25820790 original size:34 final size:33
Alignment explanation
Indices: 25820726--25820791 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
25820716 TTAAAGATGT
* *
25820726 TGTTCTACATGCATGGAACGGCAATTAATGAGA
1 TGTTCCACATGCATGGAACGACAATTAATGAGA
*
25820759 TGTTCCACATGCAATGG-ACGACATTTAAATGAG
1 TGTTCCACATGC-ATGGAACGACAATT-AATGAG
25820792 GGAGAGTGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 18 0.64
34 10 0.36
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (33 bp):
TGTTCCACATGCATGGAACGACAATTAATGAGA
Found at i:25822305 original size:27 final size:27
Alignment explanation
Indices: 25822254--25822305 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
25822244 TCATCTTAGT
* *
25822254 TTTAATTAATAAGTGTTTTTGTTGAAC
1 TTTAATTAATAAGTGTTGTTCTTGAAC
*
25822281 TTTATTTAATAAGTGTTGTTCTTGA
1 TTTAATTAATAAGTGTTGTTCTTGA
25822306 TTAATCTAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.27, C:0.04, G:0.15, T:0.54
Consensus pattern (27 bp):
TTTAATTAATAAGTGTTGTTCTTGAAC
Found at i:25824907 original size:33 final size:33
Alignment explanation
Indices: 25824869--25824931 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
25824859 GATTATTCAC
25824869 TTCAC-TCATTTCTTTT-ACAGACTCTCTTTCTTT
1 TTCACTTCATTTCTTTTCA-AG-CTCTCTTTCTTT
*
25824902 TTCACTTGATTTCTTTTCAAGCTCTCTTTC
1 TTCACTTCATTTCTTTTCAAGCTCTCTTTC
25824932 AATTTCTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 14 0.52
34 12 0.44
35 1 0.04
ACGTcount: A:0.14, C:0.27, G:0.05, T:0.54
Consensus pattern (33 bp):
TTCACTTCATTTCTTTTCAAGCTCTCTTTCTTT
Found at i:25824970 original size:18 final size:18
Alignment explanation
Indices: 25824946--25824989 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
25824936 TCTTTTTTCG
* *
25824946 CTTTTTCTTTTTCAATTT
1 CTTTTTCATTCTCAATTT
*
25824964 TTTTTTCATTCTCAATTT
1 CTTTTTCATTCTCAATTT
25824982 CTTTTTCA
1 CTTTTTCA
25824990 ATTTTCTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.14, C:0.18, G:0.00, T:0.68
Consensus pattern (18 bp):
CTTTTTCATTCTCAATTT
Found at i:25824999 original size:12 final size:12
Alignment explanation
Indices: 25824949--25825063 Score: 58
Period size: 12 Copynumber: 10.6 Consensus size: 12
25824939 TTTTTCGCTT
25824949 TTTCTTTTTCAA
1 TTTCTTTTTCAA
*
25824961 TTTTTTTTTC-A
1 TTTCTTTTTCAA
25824972 -TTC----TCAA
1 TTTCTTTTTCAA
25824979 TTTCTTTTTCAA
1 TTTCTTTTTCAA
25824991 TTT-TCTTTTC--
1 TTTCT-TTTTCAA
* *
25825001 -TTCATTTTCAT
1 TTTCTTTTTCAA
**
25825012 TTTCTTTTTCGT
1 TTTCTTTTTCAA
*
25825024 TTTCTTTTT--G
1 TTTCTTTTTCAA
*
25825034 TTT-TCTTTCAA
1 TTTCTTTTTCAA
25825045 TTTCTTTTTCAA
1 TTTCTTTTTCAA
*
25825057 TCTCTTT
1 TTTCTTT
25825064 CTCCTTTTCT
Statistics
Matches: 79, Mismatches: 10, Indels: 28
0.68 0.09 0.24
Matches are distributed among these distances:
6 2 0.03
7 1 0.01
8 3 0.04
9 11 0.14
10 5 0.06
11 5 0.06
12 52 0.66
ACGTcount: A:0.11, C:0.17, G:0.02, T:0.70
Consensus pattern (12 bp):
TTTCTTTTTCAA
Found at i:25825016 original size:33 final size:32
Alignment explanation
Indices: 25824949--25825057 Score: 125
Period size: 33 Copynumber: 3.4 Consensus size: 32
25824939 TTTTTCGCTT
*
25824949 TTTCTTTTTCAA-TTT-TTTTTTCATTCTCAA
1 TTTCTTTTTCAATTTTCTTTTTTCATTTTCAA
*
25824979 TTTCTTTTTCAATTTTCTTTTCTTCATTTTCAT
1 TTTCTTTTTCAATTTTCTTTT-TTCATTTTCAA
* **
25825012 TTTCTTTTTC-GTTTTCTTTTTGTTTTCTTTCAA
1 TTTCTTTTTCAATTTTCTTTTT-TCAT-TTTCAA
25825045 TTTCTTTTTCAAT
1 TTTCTTTTTCAAT
25825058 CTCTTTCTCC
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
30 12 0.18
31 4 0.06
32 15 0.23
33 34 0.52
34 1 0.02
ACGTcount: A:0.12, C:0.17, G:0.02, T:0.70
Consensus pattern (32 bp):
TTTCTTTTTCAATTTTCTTTTTTCATTTTCAA
Found at i:25825054 original size:6 final size:6
Alignment explanation
Indices: 25824946--25825041 Score: 52
Period size: 6 Copynumber: 15.7 Consensus size: 6
25824936 TCTTTTTTCG
* * * ** *
25824946 CTTTTT CTTTTT CAATTTT -TTTTT CATTCT CAATTT CTTTTT CAATTTT
1 CTTTTT CTTTTT C-TTTTT CTTTTT CTTTTT CTTTTT CTTTTT C-TTTTT
* * * *
25824995 CTTTTCTT CATTTT CATTTT CTTTTT CGTTTT CTTTTT -GTTTT CTTT
1 C-TTT-TT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTT
25825042 CAATTTCTTT
Statistics
Matches: 68, Mismatches: 17, Indels: 10
0.72 0.18 0.11
Matches are distributed among these distances:
5 8 0.12
6 44 0.65
7 13 0.19
8 3 0.04
ACGTcount: A:0.09, C:0.17, G:0.02, T:0.72
Consensus pattern (6 bp):
CTTTTT
Found at i:25827785 original size:20 final size:19
Alignment explanation
Indices: 25827762--25827827 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 19
25827752 AAGCTCAAAC
25827762 GAGCTAAAGTAAGCTAAATT
1 GAGCTAAAGT-AGCTAAATT
25827782 GAGCTCAAACG-AGCTAAATT
1 GAGCT-AAA-GTAGCTAAATT
* * *
25827802 AAGCTCAAGTGAGCTAAATC
1 GAGCTAAAGT-AGCTAAATT
25827822 GAGCTA
1 GAGCTA
25827828 GGAAAAACTA
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
18 1 0.03
19 2 0.05
20 30 0.81
21 3 0.08
22 1 0.03
ACGTcount: A:0.41, C:0.17, G:0.21, T:0.21
Consensus pattern (19 bp):
GAGCTAAAGTAGCTAAATT
Found at i:25827789 original size:30 final size:30
Alignment explanation
Indices: 25827753--25827827 Score: 107
Period size: 30 Copynumber: 2.5 Consensus size: 30
25827743 ACTTAAGCCA
*
25827753 AGCTCAAACGAGCTAAAGTAAGCTAAATTG
1 AGCTCAAACGAGCTAAAGTAAGCTAAAGTG
* *
25827783 AGCTCAAACGAGCTAAATTAAGCTCAAGTG
1 AGCTCAAACGAGCTAAAGTAAGCTAAAGTG
25827813 AGCT-AAATCGAGCTA
1 AGCTCAAA-CGAGCTA
25827828 GGAAAAACTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
29 3 0.07
30 38 0.93
ACGTcount: A:0.41, C:0.19, G:0.20, T:0.20
Consensus pattern (30 bp):
AGCTCAAACGAGCTAAAGTAAGCTAAAGTG
Found at i:25830621 original size:24 final size:23
Alignment explanation
Indices: 25830567--25830622 Score: 58
Period size: 24 Copynumber: 2.4 Consensus size: 23
25830557 GATTAATTAA
**
25830567 GAAATGGTATTTGGTTTTGGTAC
1 GAAATGGTATTTGGAATTGGTAC
***
25830590 GTTTTGGTATTTGGGAATTGGTAC
1 GAAATGGTATTT-GGAATTGGTAC
25830614 GAAATGGTA
1 GAAATGGTA
25830623 ATGGTTCAAA
Statistics
Matches: 24, Mismatches: 8, Indels: 1
0.73 0.24 0.03
Matches are distributed among these distances:
23 9 0.38
24 15 0.62
ACGTcount: A:0.23, C:0.04, G:0.32, T:0.41
Consensus pattern (23 bp):
GAAATGGTATTTGGAATTGGTAC
Found at i:25833238 original size:22 final size:22
Alignment explanation
Indices: 25833213--25833265 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 22
25833203 GATTGAGAGT
25833213 GAAAAGAAATT-GAAAAAGAAGA
1 GAAAAGAAATTAGAAAAAGAA-A
25833235 GAAAATG-AATTAGAAAAAGAAA
1 GAAAA-GAAATTAGAAAAAGAAA
*
25833257 CAAAAGAAA
1 GAAAAGAAA
25833266 AAGACGTGGA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
21 1 0.04
22 16 0.59
23 10 0.37
ACGTcount: A:0.70, C:0.02, G:0.19, T:0.09
Consensus pattern (22 bp):
GAAAAGAAATTAGAAAAAGAAA
Found at i:25835467 original size:20 final size:20
Alignment explanation
Indices: 25835444--25835490 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
25835434 GGGTTAAGAT
*
25835444 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
25835464 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
25835484 TGAGCTG
1 TGAGCTG
25835491 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:25837216 original size:48 final size:48
Alignment explanation
Indices: 25837161--25837266 Score: 137
Period size: 48 Copynumber: 2.2 Consensus size: 48
25837151 TTGTCTTTTC
*
25837161 TTTCTTTTTCAATTT-TCTCT-TTTTCCTCACA-CTTTTGTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTT--TCACATCCTTT-TTCAATCTCAA
* *
25837209 TTTCTTTTTCGATTTCTTTCTCTTTTTCACATCCTTTTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
25837257 TTTCTTTTTC
1 TTTCTTTTTC
25837267 CATGACACTC
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.14, C:0.25, G:0.02, T:0.59
Consensus pattern (48 bp):
TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
Found at i:25838305 original size:10 final size:10
Alignment explanation
Indices: 25838292--25838390 Score: 69
Period size: 10 Copynumber: 9.8 Consensus size: 10
25838282 GACTTTTCAC
25838292 TTTTTTTTCT
1 TTTTTTTTCT
25838302 TTTTTTTTCT
1 TTTTTTTTCT
***
25838312 CACTTTTT-T
1 TTTTTTTTCT
*
25838321 TTTCTTTTC-
1 TTTTTTTTCT
25838330 TTTTTTTTCT
1 TTTTTTTTCT
*
25838340 TTTTTTTCACT
1 TTTTTTT-TCT
***
25838351 TTTTTTTGAA
1 TTTTTTTTCT
25838361 TTTTTTTTCAAAT
1 TTTTTTTTC---T
25838374 TTTTTTTT-T
1 TTTTTTTTCT
25838383 TTTTTTTT
1 TTTTTTTT
25838391 ACTCCAATAC
Statistics
Matches: 68, Mismatches: 15, Indels: 13
0.71 0.16 0.14
Matches are distributed among these distances:
9 22 0.32
10 29 0.43
11 9 0.13
13 8 0.12
ACGTcount: A:0.07, C:0.10, G:0.01, T:0.82
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:25838315 original size:23 final size:22
Alignment explanation
Indices: 25838285--25838369 Score: 89
Period size: 22 Copynumber: 3.7 Consensus size: 22
25838275 CTCGCAAGAC
25838285 TTTTCACTTTTTTTTCTTTTTT
1 TTTTCACTTTTTTTTCTTTTTT
25838307 TTTCTCACTTTTTTTTTCTTTTCTT
1 TTT-TCAC-TTTTTTTTCTTTT-TT
** **
25838332 TTTTTTCTTTTTTTTCACTTTT
1 TTTTCACTTTTTTTTCTTTTTT
* *
25838354 TTTTGAATTTTTTTTC
1 TTTTCACTTTTTTTTC
25838370 AAATTTTTTT
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
22 18 0.34
23 15 0.28
24 15 0.28
25 5 0.09
ACGTcount: A:0.06, C:0.14, G:0.01, T:0.79
Consensus pattern (22 bp):
TTTTCACTTTTTTTTCTTTTTT
Found at i:25838357 original size:14 final size:12
Alignment explanation
Indices: 25838292--25838346 Score: 65
Period size: 12 Copynumber: 4.4 Consensus size: 12
25838282 GACTTTTCAC
25838292 TTTTTTTTCTTT
1 TTTTTTTTCTTT
* **
25838304 TTTTTTCTCACT
1 TTTTTTTTCTTT
25838316 TTTTTTTTCTTTT
1 TTTTTTTTC-TTT
25838329 CTTTTTTTTCTTT
1 -TTTTTTTTCTTT
25838342 TTTTT
1 TTTTT
25838347 CACTTTTTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
12 22 0.63
13 4 0.11
14 9 0.26
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTTTTTCTTT
Found at i:25838386 original size:22 final size:21
Alignment explanation
Indices: 25838330--25838390 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 21
25838320 TTTTCTTTTC
* *
25838330 TTTTTTTTCTTTTTTTTCACT
1 TTTTTTTTATTTTTTTTCAAT
*
25838351 TTTTTTTGAATTTTTTTTCAAAT
1 TTTTTTT-TATTTTTTTTC-AAT
*
25838374 TTTTTTTTTTTTTTTTT
1 TTTTTTTTATTTTTTTT
25838391 ACTCCAATAC
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
21 7 0.21
22 17 0.52
23 9 0.27
ACGTcount: A:0.10, C:0.07, G:0.02, T:0.82
Consensus pattern (21 bp):
TTTTTTTTATTTTTTTTCAAT
Found at i:25839881 original size:20 final size:20
Alignment explanation
Indices: 25839858--25839904 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
25839848 GGGTTAAGAT
*
25839858 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
25839878 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
25839898 TGAGCTG
1 TGAGCTG
25839905 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:25842859 original size:11 final size:11
Alignment explanation
Indices: 25842843--25842887 Score: 65
Period size: 11 Copynumber: 4.2 Consensus size: 11
25842833 AGTAGATTCG
25842843 TGAAAAAAAAT
1 TGAAAAAAAAT
*
25842854 TGAAAAAAAAA
1 TGAAAAAAAAT
*
25842865 T-CAAAAAAAT
1 TGAAAAAAAAT
25842875 TGAAAAAAAAT
1 TGAAAAAAAAT
25842886 TG
1 TG
25842888 TATACGGTCT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
10 8 0.28
11 21 0.72
ACGTcount: A:0.71, C:0.02, G:0.09, T:0.18
Consensus pattern (11 bp):
TGAAAAAAAAT
Found at i:25844781 original size:22 final size:22
Alignment explanation
Indices: 25844730--25844795 Score: 80
Period size: 21 Copynumber: 3.0 Consensus size: 22
25844720 GGTATTTGGG
* *
25844730 AATTGGTTCGAAATAGTATGG-
1 AATTGGTACGAAATGGTATGGT
25844751 AATTGGTACGAAATGGTATGGT
1 AATTGGTACGAAATGGTATGGT
* *
25844773 ATTTGGTACGAATTGGTAATGGT
1 AATTGGTACGAAATGGT-ATGGT
25844796 TCAAAGAGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
21 19 0.49
22 15 0.38
23 5 0.13
ACGTcount: A:0.30, C:0.05, G:0.30, T:0.35
Consensus pattern (22 bp):
AATTGGTACGAAATGGTATGGT
Found at i:25851248 original size:23 final size:23
Alignment explanation
Indices: 25851220--25851269 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
25851210 AGTTAAATTT
25851220 GCATTTCAAAACCATGCATTTAA
1 GCATTTCAAAACCATGCATTTAA
25851243 GCATTTCAAAACCATGCATTTAA
1 GCATTTCAAAACCATGCATTTAA
25851266 GCAT
1 GCAT
25851270 CTTTAATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.30
Consensus pattern (23 bp):
GCATTTCAAAACCATGCATTTAA
Found at i:25851413 original size:190 final size:197
Alignment explanation
Indices: 25851073--25851434 Score: 625
Period size: 190 Copynumber: 1.9 Consensus size: 197
25851063 AGTTTGTGTT
25851073 TTTAATTATGTCATAGTTTGCACATCATTAATATGTGTTCTGCATTTAATAAAGTCATGCATTAT
1 TTTAATTATGTCATAGTTTGCACATCATTAATATGTGTTCTGCATTTAAT-AAGTCATGCATTAT
25851138 GTAACTTTCATGTTAGTTAAGTTTGCATCATTAAATTAAGTCAAGTTAGTTTAATTATGTAACTT
65 GTAACTTTCATGTTAGTTAAGTTTGCATCATTAAATTAAGTCAAGTTAGTTTAATTATGTAACTT
25851203 TTCAGTTAGTTAAATTTGCATTTCAAAACCATGCATTTAAGCATTTCAAAACCATGCATTTAAGC
130 TTCAGTTAGTTAAATTTGCATTTCAAAACCATGCATTTAAGCATTTCAAAACCATGCATTTAAGC
25851268 ATC
195 ATC
25851271 TTTAATTATGTCATAGTTTGCA-AT-ATTAATATGTGTT-TGCATTTAAT-A-TCATGCATTATG
1 TTTAATTATGTCATAGTTTGCACATCATTAATATGTGTTCTGCATTTAATAAGTCATGCATTATG
*
25851331 T-ACTTTCATGTTAGTTAAGTTTGCATC-TTAATTTTAAGTCAAG-TAGTTTAATTATGTAAC-T
66 TAACTTTCATGTTAGTTAAGTTTGCATCATTAA-ATTAAGTCAAGTTAGTTTAATTATGTAACTT
25851392 TTCATGTTAGTTAAATTTGCATTTCAAAACCATGCATTTAAGC
130 TTCA-GTTAGTTAAATTTGCATTTCAAAACCATGCATTTAAGC
25851435 TCTTAGTTTA
Statistics
Matches: 161, Mismatches: 1, Indels: 12
0.93 0.01 0.07
Matches are distributed among these distances:
189 5 0.03
190 59 0.37
191 36 0.22
192 13 0.08
193 1 0.01
195 10 0.06
196 13 0.08
197 2 0.01
198 22 0.14
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.43
Consensus pattern (197 bp):
TTTAATTATGTCATAGTTTGCACATCATTAATATGTGTTCTGCATTTAATAAGTCATGCATTATG
TAACTTTCATGTTAGTTAAGTTTGCATCATTAAATTAAGTCAAGTTAGTTTAATTATGTAACTTT
TCAGTTAGTTAAATTTGCATTTCAAAACCATGCATTTAAGCATTTCAAAACCATGCATTTAAGCA
TC
Found at i:25852628 original size:13 final size:14
Alignment explanation
Indices: 25852610--25852645 Score: 65
Period size: 13 Copynumber: 2.6 Consensus size: 14
25852600 TTGTGAAAAA
25852610 AAAAAAAAATT-TG
1 AAAAAAAAATTGTG
25852623 AAAAAAAAATTGTG
1 AAAAAAAAATTGTG
25852637 AAAAAAAAA
1 AAAAAAAAA
25852646 AAAAGAGCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.75, C:0.00, G:0.08, T:0.17
Consensus pattern (14 bp):
AAAAAAAAATTGTG
Found at i:25858724 original size:22 final size:22
Alignment explanation
Indices: 25858696--25858739 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
25858686 TTTTGAACCA
25858696 TTACCATTTCGTACCAAATCCC
1 TTACCATTTCGTACCAAATCCC
*
25858718 TTACCATTTCGTACCAATTCCC
1 TTACCATTTCGTACCAAATCCC
25858740 AAATACCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.25, C:0.36, G:0.05, T:0.34
Consensus pattern (22 bp):
TTACCATTTCGTACCAAATCCC
Found at i:25859897 original size:20 final size:20
Alignment explanation
Indices: 25859872--25859955 Score: 96
Period size: 20 Copynumber: 4.2 Consensus size: 20
25859862 CATGCGGTTT
* *
25859872 AGCTCACTTAAGCTCAATTC
1 AGCTCACTCAAGCTCAAGTC
*
25859892 AGCTCACTCGAGCTCAAGTC
1 AGCTCACTCAAGCTCAAGTC
*
25859912 AGCTCATTCAAGCTCAAGTC
1 AGCTCACTCAAGCTCAAGTC
* * * *
25859932 AGCTCCCACGAGCTCAATTC
1 AGCTCACTCAAGCTCAAGTC
25859952 AGCT
1 AGCT
25859956 TATTGAGCTC
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 54 1.00
ACGTcount: A:0.27, C:0.33, G:0.15, T:0.24
Consensus pattern (20 bp):
AGCTCACTCAAGCTCAAGTC
Found at i:25859916 original size:40 final size:40
Alignment explanation
Indices: 25859872--25859955 Score: 116
Period size: 40 Copynumber: 2.1 Consensus size: 40
25859862 CATGCGGTTT
* *
25859872 AGCTCACTT-AAGCTCAATTCAGCTCACTCGAGCTCAAGTC
1 AGCTCA-TTCAAGCTCAAGTCAGCTCACACGAGCTCAAGTC
* *
25859912 AGCTCATTCAAGCTCAAGTCAGCTCCCACGAGCTCAATTC
1 AGCTCATTCAAGCTCAAGTCAGCTCACACGAGCTCAAGTC
25859952 AGCT
1 AGCT
25859956 TATTGAGCTC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
39 2 0.05
40 37 0.95
ACGTcount: A:0.27, C:0.33, G:0.15, T:0.24
Consensus pattern (40 bp):
AGCTCATTCAAGCTCAAGTCAGCTCACACGAGCTCAAGTC
Found at i:25859955 original size:10 final size:10
Alignment explanation
Indices: 25859872--25859936 Score: 53
Period size: 10 Copynumber: 6.5 Consensus size: 10
25859862 CATGCGGTTT
* *
25859872 AGCTCACTTA
1 AGCTCAATTC
25859882 AGCTCAATTC
1 AGCTCAATTC
*
25859892 AGCTC-ACTC
1 AGCTCAATTC
*
25859901 GAGCTCAAGTC
1 -AGCTCAATTC
25859912 AGCTC-ATTC
1 AGCTCAATTC
*
25859921 AAGCTCAAGTC
1 -AGCTCAATTC
25859932 AGCTC
1 AGCTC
25859937 CCACGAGCTC
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
9 6 0.13
10 33 0.73
11 6 0.13
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (10 bp):
AGCTCAATTC
Found at i:25865563 original size:14 final size:14
Alignment explanation
Indices: 25865544--25865599 Score: 96
Period size: 14 Copynumber: 4.0 Consensus size: 14
25865534 TAGCTCTCTC
25865544 TTTTTTTTTCACAA
1 TTTTTTTTTCACAA
25865558 TTTTTTTTTCACAA
1 TTTTTTTTTCACAA
25865572 TTTTTTTTTCA-AA
1 TTTTTTTTTCACAA
25865585 TTTTTTTTTTCACAA
1 -TTTTTTTTTCACAA
25865600 CTTGATATCC
Statistics
Matches: 40, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
13 2 0.05
14 36 0.90
15 2 0.05
ACGTcount: A:0.21, C:0.12, G:0.00, T:0.66
Consensus pattern (14 bp):
TTTTTTTTTCACAA
Found at i:25865658 original size:10 final size:11
Alignment explanation
Indices: 25865640--25865683 Score: 70
Period size: 11 Copynumber: 3.9 Consensus size: 11
25865630 AAACCAAAAA
25865640 AATTTTTTTTG
1 AATTTTTTTTG
25865651 AATTTTTTTTG
1 AATTTTTTTTG
25865662 AATTTTTTTTTG
1 AA-TTTTTTTTG
*
25865674 AGTTTTTTTT
1 AATTTTTTTT
25865684 CGAGAAACTA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
11 21 0.68
12 10 0.32
ACGTcount: A:0.16, C:0.00, G:0.09, T:0.75
Consensus pattern (11 bp):
AATTTTTTTTG
Found at i:25865659 original size:12 final size:12
Alignment explanation
Indices: 25865642--25865683 Score: 68
Period size: 12 Copynumber: 3.6 Consensus size: 12
25865632 ACCAAAAAAA
25865642 TTTTTTTTGAA-
1 TTTTTTTTGAAT
25865653 TTTTTTTTGAAT
1 TTTTTTTTGAAT
*
25865665 TTTTTTTTGAGT
1 TTTTTTTTGAAT
25865677 TTTTTTT
1 TTTTTTT
25865684 CGAGAAACTA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
11 11 0.38
12 18 0.62
ACGTcount: A:0.12, C:0.00, G:0.10, T:0.79
Consensus pattern (12 bp):
TTTTTTTTGAAT
Found at i:25871133 original size:9 final size:9
Alignment explanation
Indices: 25871119--25871145 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
25871109 AGAAAGTGAA
25871119 TCTTGATTT
1 TCTTGATTT
25871128 TCTTGATTT
1 TCTTGATTT
25871137 TCTTGATTT
1 TCTTGATTT
25871146 GAGCCCATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.11, C:0.11, G:0.11, T:0.67
Consensus pattern (9 bp):
TCTTGATTT
Found at i:25872261 original size:23 final size:22
Alignment explanation
Indices: 25872209--25872261 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
25872199 TCCACGTCTT
*
25872209 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
25872231 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
25872254 TTTCTTTT
1 TTTCTTTT
25872262 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:25875689 original size:11 final size:11
Alignment explanation
Indices: 25875670--25875700 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
25875660 AAAAACTCGA
25875670 AAAAGAAAATTC
1 AAAA-AAAATTC
25875682 AAAAAAAATTC
1 AAAAAAAATTC
25875693 AAAAAAAA
1 AAAAAAAA
25875701 ATTTTTTTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 15 0.79
12 4 0.21
ACGTcount: A:0.77, C:0.06, G:0.03, T:0.13
Consensus pattern (11 bp):
AAAAAAAATTC
Found at i:25875701 original size:12 final size:12
Alignment explanation
Indices: 25875657--25875703 Score: 60
Period size: 12 Copynumber: 3.8 Consensus size: 12
25875647 TAGTTTCTCG
*
25875657 AAAAAAAACTCGA
1 AAAAAAAATTC-A
25875670 AAAAGAAAATTC-
1 AAAA-AAAATTCA
25875682 AAAAAAAATTCA
1 AAAAAAAATTCA
25875694 AAAAAAAATT
1 AAAAAAAATT
25875704 TTTTTGGTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
11 7 0.23
12 14 0.45
13 4 0.13
14 6 0.19
ACGTcount: A:0.72, C:0.09, G:0.04, T:0.15
Consensus pattern (12 bp):
AAAAAAAATTCA
Found at i:25875766 original size:14 final size:15
Alignment explanation
Indices: 25875744--25875783 Score: 59
Period size: 12 Copynumber: 2.9 Consensus size: 15
25875734 GGATATCAAG
25875744 TTGTGAAAAAAAAAA
1 TTGTGAAAAAAAAAA
25875759 TT-TG--AAAAAAAA
1 TTGTGAAAAAAAAAA
25875771 TTGTGAAAAAAAA
1 TTGTGAAAAAAAA
25875784 GAGAGCTAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
12 10 0.45
13 2 0.09
14 2 0.09
15 8 0.36
ACGTcount: A:0.65, C:0.00, G:0.12, T:0.23
Consensus pattern (15 bp):
TTGTGAAAAAAAAAA
Found at i:25878869 original size:11 final size:11
Alignment explanation
Indices: 25878853--25878928 Score: 53
Period size: 11 Copynumber: 6.6 Consensus size: 11
25878843 ATTGTAATTG
25878853 AAAAAAAATCA
1 AAAAAAAATCA
**
25878864 AAAAAAAAAGA
1 AAAAAAAATCA
** *
25878875 AGAGGAAATTCGA
1 A-AAAAAAATC-A
*
25878888 AAAAAAAATTTA
1 AAAAAAAA-TCA
*
25878900 AAAAAAAATCG
1 AAAAAAAATCA
*
25878911 AAAAAAAATTA
1 AAAAAAAATCA
25878922 AAAAAAA
1 AAAAAAA
25878929 TCGAAGTATA
Statistics
Matches: 47, Mismatches: 15, Indels: 6
0.69 0.22 0.09
Matches are distributed among these distances:
11 27 0.57
12 17 0.36
13 3 0.06
ACGTcount: A:0.76, C:0.04, G:0.08, T:0.12
Consensus pattern (11 bp):
AAAAAAAATCA
Found at i:25878916 original size:21 final size:21
Alignment explanation
Indices: 25878888--25878933 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 21
25878878 GGAAATTCGA
25878888 AAAAAAAATTTAAAAAAAAATCG
1 AAAAAAAA-TT-AAAAAAAATCG
25878911 AAAAAAAATTAAAAAAAATCG
1 AAAAAAAATTAAAAAAAATCG
25878932 AA
1 AA
25878934 GTATATAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 13 0.57
22 2 0.09
23 8 0.35
ACGTcount: A:0.76, C:0.04, G:0.04, T:0.15
Consensus pattern (21 bp):
AAAAAAAATTAAAAAAAATCG
Found at i:25879837 original size:37 final size:37
Alignment explanation
Indices: 25879786--25879856 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
25879776 CATTCTTGTA
25879786 AAGAGAAAATAAAGAAAA-GAAAAGAAAAAGAAAAAGC
1 AAGAGAAAATAAAGAAAATG-AAAGAAAAAGAAAAAGC
*
25879823 AAGAGAAGAA-AAAGAAAATGAAATAAAAAGAAAA
1 AAGAGAA-AATAAAGAAAATGAAAGAAAAAGAAAA
25879857 GAGAGGCAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
37 28 0.90
38 3 0.10
ACGTcount: A:0.76, C:0.01, G:0.18, T:0.04
Consensus pattern (37 bp):
AAGAGAAAATAAAGAAAATGAAAGAAAAAGAAAAAGC
Found at i:25879856 original size:6 final size:6
Alignment explanation
Indices: 25879796--25879845 Score: 50
Period size: 6 Copynumber: 8.2 Consensus size: 6
25879786 AAGAGAAAAT
*
25879796 AAAG-A AAAG-A AAAGAA AAAGAA AAAGCAA GAGAAGAA AAAGAA AATGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAG-AA -A-AAGAA AAAGAA AAAGAA
25879845 A
1 A
25879846 TAAAAAGAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
5 9 0.22
6 22 0.55
7 3 0.08
8 3 0.08
9 3 0.08
ACGTcount: A:0.76, C:0.02, G:0.20, T:0.02
Consensus pattern (6 bp):
AAAGAA
Found at i:25879938 original size:11 final size:12
Alignment explanation
Indices: 25879906--25879936 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
25879896 TTGAGAGAAC
25879906 TTGAAAAAGCCT
1 TTGAAAAAGCCT
25879918 TTGAAAAAGCCT
1 TTGAAAAAGCCT
25879930 TTGAAAA
1 TTGAAAA
25879937 GCAAAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (12 bp):
TTGAAAAAGCCT
Found at i:25879963 original size:30 final size:32
Alignment explanation
Indices: 25879929--25879995 Score: 79
Period size: 30 Copynumber: 2.2 Consensus size: 32
25879919 TGAAAAAGCC
25879929 TTTGAAAAG-CAAAAAGAAAATG-AAAAGAAA
1 TTTGAAAAGTCAAAAAGAAAATGAAAAAGAAA
* * *
25879959 TTTG-AGAGTGAAAAAGAAGATGAAAAAGAAA
1 TTTGAAAAGTCAAAAAGAAAATGAAAAAGAAA
25879990 -TTGAAA
1 TTTGAAA
25879996 CAAAAGAATC
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
29 3 0.10
30 18 0.60
31 9 0.30
ACGTcount: A:0.61, C:0.01, G:0.21, T:0.16
Consensus pattern (32 bp):
TTTGAAAAGTCAAAAAGAAAATGAAAAAGAAA
Found at i:25882162 original size:30 final size:30
Alignment explanation
Indices: 25882068--25882163 Score: 99
Period size: 30 Copynumber: 3.2 Consensus size: 30
25882058 AGCTCACTCC
25882068 TAGCTCATA-TTTAGCTCACGAGCTAAA-CT
1 TAGCTCA-ACTTTAGCTCACGAGCTAAAGCT
* * * **
25882097 TAGCTCAACTTCAGCTTAGGAG-TTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAAG-CT
*
25882127 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAAGCT
25882157 TAGCTCA
1 TAGCTCA
25882164 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 12, Indels: 7
0.73 0.17 0.10
Matches are distributed among these distances:
28 3 0.06
29 17 0.33
30 28 0.55
31 3 0.06
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAAGCT
Found at i:25884296 original size:24 final size:22
Alignment explanation
Indices: 25884264--25884821 Score: 133
Period size: 21 Copynumber: 26.0 Consensus size: 22
25884254 CTATTTAGTA
*
25884264 ATTAGTATTTAATTAGTATTTTTT
1 ATTATTATTT-ATTA-TATTTTTT
*
25884288 ATTATTATTTTTTATATTTTTT
1 ATTATTATTTATTATATTTTTT
*
25884310 -TTTTTATTCT-TT-T-TTTTTT
1 ATTATTATT-TATTATATTTTTT
* *
25884329 ATAATTTTTATATTATATTTTTT
1 ATTATTATT-TATTATATTTTTT
25884352 -TATATTATTTTATTATTTTATTTTTTT
1 AT-TATTA-TTTATTA---TA-TTTTTT
*
25884379 ATT-TTATTT-TTATATATTTAT
1 ATTATTATTTATTATAT-TTTTT
*
25884400 ATTA-TATTT-TTATGTTTTATT
1 ATTATTATTTATTATATTTT-TT
25884421 -TTATT-TTT-TTAT-TTTGTGATT
1 ATTATTATTTATTATATTT-T--TT
*
25884442 ATT-TTATTTTTTATTATTTATTT
1 ATTATTATTTATTA-TATTT-TTT
* * * *
25884465 ATTTTTTTTTTTTATTTCTTATTT
1 ATTATTATTTATTATAT-TT-TTT
* * *
25884489 ATGTTTTATATATTATA-ATTTT
1 AT-TATTATTTATTATATTTTTT
*
25884511 -TT-TTATTTCTTAT-TTTTTT
1 ATTATTATTTATTATATTTTTT
*
25884530 -TTA--ATTTTTTA-ATTTTTT
1 ATTATTATTTATTATATTTTTT
* *
25884548 ATT-TT-TTTTTTATTTTTTATT
1 ATTATTATTTATTATATTTT-TT
*
25884569 ATTTATTATTTGTT-T-TTTTTT
1 A-TTATTATTTATTATATTTTTT
* * * *
25884590 GATGTTTTTTTTATTTTAATGTTTT
1 -AT-TATTATTTATTAT-ATTTTTT
*
25884615 -TT-TTATTTTATCAT-TTTTTT
1 ATTATTA-TTTATTATATTTTTT
* ** *
25884635 ACT-TGGTTTATTTTATTTTTT
1 ATTATTATTTATTATATTTTTT
*
25884656 A-TATTTTTATATTATATTTATTT
1 ATTATTATT-TATTATATTT-TTT
25884679 -TTGATTATATT-TT-T-TTTTTT
1 ATT-ATTAT-TTATTATATTTTTT
* *
25884699 TTTATTATTTATTTTATTTTTT
1 ATTATTATTTATTATATTTTTT
* * * *
25884721 ATTTTTGTTT-TTGTCTTTTTT
1 ATTATTATTTATTATATTTTTT
* * *
25884742 TTTATTATTT-TTTTTTTTTTT
1 ATTATTATTTATTATATTTTTT
*
25884763 TTTATTA-TT-TT-TATTTTTT
1 ATTATTATTTATTATATTTTTT
* * *
25884782 ATTGTT-TTTTTTTTATGTTTTT
1 ATTATTATTTATTATAT-TTTTT
*
25884804 -TTTTTATTT-TTA-ATTTTT
1 ATTATTATTTATTATATTTTT
25884822 ATTTAATTTT
Statistics
Matches: 416, Mismatches: 58, Indels: 125
0.69 0.10 0.21
Matches are distributed among these distances:
18 13 0.03
19 52 0.12
20 57 0.14
21 105 0.25
22 72 0.17
23 39 0.09
24 42 0.10
25 23 0.06
26 5 0.01
27 7 0.02
28 1 0.00
ACGTcount: A:0.18, C:0.01, G:0.03, T:0.78
Consensus pattern (22 bp):
ATTATTATTTATTATATTTTTT
Found at i:25884336 original size:23 final size:22
Alignment explanation
Indices: 25884310--25884990 Score: 131
Period size: 21 Copynumber: 29.8 Consensus size: 22
25884300 TATATTTTTT
25884310 TTTTTATTCTTTTTTTTTTATAA
1 TTTTTATT-TTTTTTTTTTATAA
* *
25884333 TTTTTATATTATATTTTTTTATAT
1 TTTTTAT-TT-TTTTTTTTTATAA
25884357 TATTTTATTATTTTATTTTTT-T-A
1 T-TTTTATT-TTTT-TTTTTTATAA
*
25884380 -TTTTATTTTTATATATTTATATTATA
1 TTTTTATTTTT-T-T-TTTTTA-TA-A
* * *
25884406 TTTTTA-TGTTTTATTTTAT-T
1 TTTTTATTTTTTTTTTTTATAA
*
25884426 TTTTTATTTTGTGATTATTTTAT--
1 TTTTTATTTT-T--TTTTTTTATAA
**
25884449 TTTTTATTATTTATTTATTTT-TTT
1 TTTTTATT-TTT-TTT-TTTTATAA
25884473 TTTTTATTTCTTATTTATGTTTTATATA
1 TTTTTA-TT-TT-TTT-T-TTTTATA-A
* * * * *
25884501 TTATAATTTTTTTTATTTCTTA
1 TTTTTATTTTTTTTTTTTATAA
** *
25884523 TTTTT-TTTTAATTTTTTA-AT
1 TTTTTATTTTTTTTTTTTATAA
25884543 TTTTTATTTTTTTTTTATT-T--
1 TTTTTATTTTTTTTTT-TTATAA
25884563 TTTATTATTTATTATTTGTTTT-T--
1 TTT-TTATTT-TT-TTT-TTTTATAA
*
25884586 TTTTGATGTTTTTTTTATTT-TAA
1 TTTTTAT-TTTTTTTT-TTTATAA
* * * *
25884609 TGTTTT-TTTTATTTTATCAT-T
1 T-TTTTATTTTTTTTTTTTATAA
** * *
25884630 TTTTTACTTGGTTTATTTTAT-T
1 TTTTTA-TTTTTTTTTTTTATAA
*
25884652 TTTTATATTTTTATATTATATTTAT-T
1 TTTT-TATTTTT-T-TT-T-TTTATAA
* *
25884678 TTTGATTATATTTTTTTTTTTTTTA
1 TTT--TTAT-TTTTTTTTTTTATAA
* *
25884703 TTATTTA-TTTTATTTTTTAT-T
1 TT-TTTATTTTTTTTTTTTATAA
* *
25884724 TTTGTTTTTGTCTTTTTTTTTATTA
1 TTT-TTATT-T-TTTTTTTTTATAA
*
25884749 TTTTT-TTTTTTTTTTTTATTA
1 TTTTTATTTTTTTTTTTTATAA
25884770 TTTTTATTTTTTATTGTTTT-T--
1 TTTTTATTTTTT-TT-TTTTATAA
*
25884791 TTTTTATGTTTTTTTTTTAT--
1 TTTTTATTTTTTTTTTTTATAA
* *
25884811 TTTTAATTTTTATTTAATTTTGATATGT
1 TTTTTATTTTT-TTT--TTTT-ATA--A
* * **
25884839 TTTTTTTTTTTTTTTTTTTTTG
1 TTTTTATTTTTTTTTTTTATAA
25884861 TTTTTATTTTATTTATTTTTATATA
1 TTTTTATTTT-TTT-TTTTTATA-A
*
25884886 TTTTT-TTTTGGATTTTTTTTAT-T
1 TTTTTATTTT---TTTTTTTTATAA
*
25884909 TTTTTATTTTTTATTTTTTGT--
1 TTTTTATTTTTT-TTTTTTATAA
25884930 TTTATATATTATTTTTTTTTT-T-A
1 TTT-T-TATT-TTTTTTTTTTATAA
* * *
25884953 TATTT-TTTTATTTATTTATAA
1 TTTTTATTTTTTTTTTTTATAA
25884974 -TTTTATTTTTTTTTTTT
1 TTTTTATTTTTTTTTTTT
25884991 TTTTTTATAT
Statistics
Matches: 504, Mismatches: 73, Indels: 164
0.68 0.10 0.22
Matches are distributed among these distances:
19 12 0.02
20 41 0.08
21 97 0.19
22 85 0.17
23 75 0.15
24 87 0.17
25 46 0.09
26 28 0.06
27 15 0.03
28 18 0.04
ACGTcount: A:0.17, C:0.01, G:0.03, T:0.79
Consensus pattern (22 bp):
TTTTTATTTTTTTTTTTTATAA
Found at i:25884405 original size:102 final size:98
Alignment explanation
Indices: 25884289--25885053 Score: 371
Period size: 100 Copynumber: 7.6 Consensus size: 98
25884279 GTATTTTTTA
*
25884289 TTATTATTT-T-TTATATTTTTTTTTTTATTCTTTTTTTTTTATAATTTTTATATTATATTTTTT
1 TTATTATTTATATTATATTTTTTTTTTTATTCTTTTTTTTTTAT-ATTTTT-TTTTATATTTTTT
25884352 TATATTATTTTATTATTTTATTTTTTTATTTTATTT
64 TATATTATTTTATTATTTTATTTTTTT-TTTTATTT
* * * **
25884388 TTATATATTTATATTATATTTTTATGTTTTATT-TTATTTTTTTAT-TTTGTGATTAT-TTTATT
1 TTAT-TATTTATATTATATTTTT-TTTTTTATTCTTTTTTTTTTATATTTTTTTTTATATTT-TT
* *
25884450 TTTTATTA-TTTATTTATTTT-TTTTTTTTATTTCTTAT
63 TTATATTATTTTA-TTATTTTATTTTTTTT-TTTATT-T
* * * * *
25884487 TTATGTTTTATATATTATAATTTTTTTTATTTCTTATTTTTTTTTAAT-TTTTTAATTTTTTATT
1 TTAT-TATT-TATATTAT-ATTTTTTTT-TTTATTCTTTTTTTTTTATATTTTT--TTTTATA-T
* *
25884551 TTTTTTTTATT-TTTTATTATTTATTATTTGTTTTTTTTTGATGT
59 TTTTTTATATTATTTTATTA-TT-TTA-TT-TTTTTTTTT-ATTT
* * *
25884595 TT-TT-TTTATTTTA-ATGTTTTTTTTATTTTATCATTTTTTTACTTGGTTTATTTTATTTTT-T
1 TTATTATTTATATTATAT-TTTTTTTT-TTAT-TC-TTTTTTT--TT--TATATTTT-TTTTTAT
* * *
25884656 ATATTTTTATATTATATTTATT-TTTGATTATATTTTTTTTTTTT
57 ATTTTTTTATATTAT-TTTATTATTTTATT-T-TTTTTTTTATTT
* * *
25884700 TTATTATTTAT-TT-TATTTTTTATTTTTGTTTTTGTCTTTTTTTTTATTATTTTTTT-T-TTTT
1 TTATTATTTATATTATATTTTTT-TTTTTATTCTT-T-TTTTTTTATATT-TTTTTTTATATTTT
*
25884761 TTTTTATTATTTTTATT-TTTTATTGTTTTTTTTTTATGTT
62 TTTATATTA-TTTTATTATTTTA-T-TTTTTTTTTTAT-TT
* * *
25884801 TT-TTTTTTAT-TTTTAATTTTTATTTAATTTTGATATGTTTTTTTTTT-T-TTTTTTTTT-T-T
1 TTATTATTTATATTAT-A-TTTT-TTT--TTTT-AT-TCTTTTTTTTTTATATTTTTTTTTATAT
* * *
25884860 GTTTTTATTTTA-TTTATT-TTTATATATTTTTTTTTGGATTT
59 TTTTTTATATTATTTTATTATTT-TAT-TTTTTTTTT-TATTT
* * * * * *
25884901 TTTTTATTT-T-TT-TATTTTTTATTTT-TTGTTTTATATATTATTTTTTTTTTTATATTTTTTT
1 TTATTATTTATATTATATTTTTTTTTTTATTCTTTT-TTTTTTATATTTTTTTTTATATTTTTTT
*
25884962 AT-TTA-TTTATAATTTTATTTTTTTTTTT-TTT
65 ATATTATTTTATTATTTTATTTTTTTTTTTATTT
* * * * * * * *
25884993 TTTTATATTTTTATTATATCTATATTTGTATATATTTTTTATTTA-A--TTTTTTTATATTTTT
1 TTAT-TATTTATATTATATTTTTTTTTTTAT-TCTTTTTTTTTTATATTTTTTTTTATATTTTT
25885054 ATATCACCAA
Statistics
Matches: 536, Mismatches: 60, Indels: 145
0.72 0.08 0.20
Matches are distributed among these distances:
91 6 0.01
92 12 0.02
93 6 0.01
94 38 0.07
95 14 0.03
96 21 0.04
97 10 0.02
98 25 0.05
99 34 0.06
100 84 0.16
101 41 0.08
102 60 0.11
103 29 0.05
104 18 0.03
105 54 0.10
106 27 0.05
107 23 0.04
108 11 0.02
109 18 0.03
110 4 0.01
111 1 0.00
ACGTcount: A:0.18, C:0.01, G:0.03, T:0.78
Consensus pattern (98 bp):
TTATTATTTATATTATATTTTTTTTTTTATTCTTTTTTTTTTATATTTTTTTTTATATTTTTTTA
TATTATTTTATTATTTTATTTTTTTTTTTATTT
Found at i:25884454 original size:91 final size:86
Alignment explanation
Indices: 25884280--25885055 Score: 417
Period size: 84 Copynumber: 8.9 Consensus size: 86
25884270 ATTTAATTAG
* * * *
25884280 TATTTTTTATTATTATTTTT-TATATTT-T-TT-TTTTTATTCTTTTTTTTTTATAATTTTTATA
1 TATTTTTT-TTTTTATTTTTATATATTTATATTATATTT-TT-TTTTTATTTTAT-TTTTTTAT-
*
25884341 TTATATTTTTTTATATTATTTTATTATTT
61 TTTTA-TTTTTT-TATT-TTTTATTATTT
25884370 TATTTTTTTATTTTATTTTTATATATTTATATTATATTTTTATGTTTTATTTTATTTTTTTATTT
1 TATTTTTTT-TTTTATTTTTATATATTTATATTATATTTTT-T-TTTTATTTTATTTTTTTATTT
*
25884435 TGTGATTATTTTATTTTTTATTA-TT
63 T-T-ATTTTTTTATTTTTTATTATTT
* * * * * *
25884460 TATTTATTTTTTT-TTTTTAT-T-TCT-TATT-TATGTTTTATATATTATAATTTTTTTTATTTC
1 TATTTTTTTTTTTATTTTTATATATTTATATTATATTTTTTTTTTATT-TTA-TTTTTTTATTT-
25884520 TTATTTTTTTTTAATTTTTTAATT-TTT
63 TTA--TTTTTTT-ATTTTTT-ATTATTT
* * *
25884547 TA-TTTTTTTTTTATTTTT-TATTATTTATTATT-TGTTTTTTTTTGA-TGT-TTTTTTTATTTT
1 TATTTTTTTTTTTATTTTTATA-TATTTA-TATTATATTTTTTTTTTATTTTATTTTTTTATTTT
* *
25884607 AATGTTTTTT-TTATTTTATCATTT
64 TAT-TTTTTTATT-TTTTATTATTT
* * * * *
25884631 TTTTACTTGGTTTATTTTATTTTTTATATTTTTATATTATATTTATTTTTGATTATATTTTTTT-
1 TATT--TT--TTT-TTTTA-TTTTTATATATTTATATTATATTTTTTTTTTATTTTATTTTTTTA
25884695 TTTTT-TTATTATTTA--TTTTATT-TTT
60 TTTTTATT-TT-TTTATTTTTTATTATTT
* * * * *
25884720 TATTTTTGTTTTTGTCTTT-T-T-TTT-TATTATTTTTTTTTTTTTTTTTATTATTTTTATTTTT
1 TATTTTTTTTTTTATTTTTATATATTTATATTATATTTTTTTTTTATTTTATT-TTTTTA-TTTT
*
25884781 TATTGTTTT-TTTTTTATGT-TTT
64 TATTTTTTTATTTTTTAT-TATTT
* * * * *
25884803 T-TTTTTATTTTTAATTTTTATTTAATTT-TGA-TATGTTTTTTTTTT-TTTTTTTTTTTTGTTT
1 TATTTTT-TTTTTTATTTTTATAT-ATTTAT-ATTATATTTTTTTTTTATTTTATTTTTTTATTT
25884864 TTATTTTATTTA-TTTTTATATATTT
63 TTATTTT-TTTATTTTTTAT-TATTT
*** * * * *
25884889 T-TTTTTGGATTT-TTTTTATTTTTTTATTTTTTATTTTTTGTTTTATATATTATTTTTTT-TTT
1 TATTTTTTTTTTTATTTTTATATATTTATATTATATTTTTT-TTTTAT-T-TTATTTTTTTATTT
*
25884951 TATATTTTTTTATTTATTTATAATTT
63 T-TATTTTTTTATTT-TTTATTATTT
* * * * * * *
25884977 TATTTTTTTTTTT-TTTTTTTATATTTTTATTATATCTATATTTGTA-TATA-TTTTTTA-TTTA
1 TATTTTTTTTTTTATTTTTATATATTTATATTATAT-TTTTTTTTTATTTTATTTTTTTATTTTT
25885038 ATTTTTTTATATTTTTAT
65 ATTTTTTTAT-TTTTTAT
25885056 ATCACCAAGA
Statistics
Matches: 543, Mismatches: 75, Indels: 142
0.71 0.10 0.19
Matches are distributed among these distances:
79 20 0.04
80 8 0.01
81 4 0.01
82 23 0.04
83 30 0.06
84 74 0.14
85 54 0.10
86 39 0.07
87 55 0.10
88 31 0.06
89 49 0.09
90 47 0.09
91 51 0.09
92 18 0.03
93 25 0.05
94 15 0.03
ACGTcount: A:0.18, C:0.01, G:0.03, T:0.78
Consensus pattern (86 bp):
TATTTTTTTTTTTATTTTTATATATTTATATTATATTTTTTTTTTATTTTATTTTTTTATTTTTA
TTTTTTTATTTTTTATTATTT
Found at i:25884524 original size:61 final size:56
Alignment explanation
Indices: 25884280--25885055 Score: 352
Period size: 61 Copynumber: 13.0 Consensus size: 56
25884270 ATTTAATTAG
* * *
25884280 TATTTTTTATTATTATT-TTTTATATTTTTTTTTTTATTCTTTTTTTTTTATAATTTTTATAT
1 TATTTTTT-TT-TT-TTATTTT-TATTTTTTTTTATATTATTATTTTTTT-T-ATTTTTAT-T
* * * *
25884342 TATATTTTTTTATATTATTTTATTATTTTATTTTTTTATT-TTATTTTTATATATTTATATT
1 TAT-TTTTTTT-TTTTA-TTT-TTATTTT-TTTTTATATTATTATTTTT-TTTATTTTTATT
* * * *
25884403 ATATTTTTATGTTTTATTTTATTTTTTTATTTTGTGATTATT-TTATTTTTTATTATTTATT
1 -TATTTTTTTTTTTTATTTT-TATTTTT-TTTTAT-ATTATTATT-TTTTTTATT-TTTATT
*
25884464 TATTTTTTTTTTTTATTTCTTATTTATGTTTTATATATTATAATTTTTTTTATTTCTTATT
1 TATTTTTTTTTTTTATTT-TTATTT-T-TTTT-TATATTATTATTTTTTTTATTT-TTATT
* *
25884525 T-TTTTTTAATTTTTTAATTTTTTATTTTTTTTT-TATTTTTTATTATTTATTATTTGTT-TT
1 TATTTTTT--TTTTTT-A-TTTTTATTTTTTTTTATA-TTATTATT-TTTTTTATTT-TTATT
* * * *
25884585 TTTTTGATGTTTTTTTTATTTTAATGTTTTTTTTATTTTATCA-TTTTTTTACTTGGTTTATTT
1 TATTT--T-TTTTTTTTATTTTTAT-TTTTTTTTATATTATTATTTTTTTTA-TT--TTTA-TT
* * *
25884648 TATTTTTTATATTTTTATATTATATTTATTTTTGATTATATTTTTTTTTTTTTTATTATTTATTT
1 TATTTTTT-T-TTTTTAT-TTTTA-TT-TTTTT--TTATATTATTATTTTTTTTATT-TTTA-TT
* * * * *
25884713 TATTTTTTATTTTTGTTTTTGTCTTTTTTTT-TATTATTTTTTTTTTTTTTTTTA-T
1 TATTTTTTTTTTTTATTTTTAT-TTTTTTTTATATTATTATTTTTTTTATTTTTATT
* * * * *
25884768 TATTTTTATTTTTTA-TTGT-TTTTTTTTTATGTTTTTTTTTTATTTTTAATTTTTATT
1 TATTTTTTTTTTTTATTTTTATTTTTTTTTAT-ATTATTATTT-TTTTT-ATTTTTATT
* * * * *
25884825 TAATTTTGATATGTTTTTT-TTTTT-TTTTTTTTTTTGTTTTTATTTTATTTATTTTTATA
1 T-ATTTT--T-T-TTTTTTATTTTTATTTTTTTTTATATTATTATTTTTTTTATTTTTATT
** * * * *
25884884 TA-TTTTTTTTTGGATTTTTTTTATTTTTTTAT-TTTTTATTTTTTGT-TTTATATAT
1 TATTTTTTTTTTTTATTTTTATT-TTTTTTTATATTATTATTTTTTTTATTTTTAT-T
* * *
25884939 TATTTTTTTTTTTATATTTTT-TTATTTATTTATAATT-TTATTTTTTTTTTTTTTTTT
1 TATTTTTTTTTTT-TATTTTTATT-TTTTTTTAT-ATTATTATTTTTTTTATTTTTATT
* *
25884996 TATATTTTTATTATATCTATATTTGTATATATTTTTTAT-TTA--ATTTTTTTATATTTTTAT
1 TAT-TTTTT-TT-T-T-T-TATTTTTAT-TTTTTTTTATATTATTATTTTTTT-TATTTTTAT
25885056 ATCACCAAGA
Statistics
Matches: 569, Mismatches: 71, Indels: 149
0.72 0.09 0.19
Matches are distributed among these distances:
52 8 0.01
53 6 0.01
54 23 0.04
55 35 0.06
56 34 0.06
57 29 0.05
58 37 0.07
59 34 0.06
60 76 0.13
61 102 0.18
62 75 0.13
63 54 0.09
64 24 0.04
65 15 0.03
66 9 0.02
67 8 0.01
ACGTcount: A:0.18, C:0.01, G:0.03, T:0.78
Consensus pattern (56 bp):
TATTTTTTTTTTTTATTTTTATTTTTTTTTATATTATTATTTTTTTTATTTTTATT
Found at i:25884988 original size:39 final size:37
Alignment explanation
Indices: 25884284--25885053 Score: 252
Period size: 36 Copynumber: 20.7 Consensus size: 37
25884274 AATTAGTATT
* * *
25884284 TTTTATTATTATTTTTTATATTTTTTT-TTTTATTCT-
1 TTTTATTTTTTTTTTTTATATTTTTTTATTTT-TTATA
* *
25884320 TTTT-TTTTTATAATTTTTATATTATATTTT-TTTATATTATT
1 TTTTATTTTT-T-TTTTTTATATT-T-TTTTATTT-T-TTATA
* * *
25884361 TTATTATTTTATTTTTTTATTTTATTTTTATATATTTATA
1 TT-TTATTTTTTTTTTTTATATT-TTTTTAT-TTTTTATA
* * *
25884401 TTATATTTTTATGTTTTATTTTATTTTTTTATTTTGTGATTA
1 TTTTATTTTT-T-TTTT-TTATATTTTTTTATTTT-TTA-TA
*
25884443 TTTTATTTTTTATTATTTAT-TTATTTTT-TTTTTT-TA
1 TTTTATTTTTT-TTTTTTATATT-TTTTTATTTTTTATA
* * * * * * *
25884479 TTTCT-TATTTATGTTTTATATATTATAATTTTTTTTA
1 TTT-TATTTTTTTTTTTTATATTTTTTTATTTTTTATA
* * *
25884516 -TTTCTTATTTTTTTTTA-ATTTTTTAATTTTTTAT-
1 TTTTATTTTTTTTTTTTATATTTTTTTATTTTTTATA
* * *
25884550 TTTT-TTTTTATTTTTTAT-TATTTATTATTTGTTT-TT
1 TTTTATTTTTTTTTTTTATAT-TTTTTTATTT-TTTATA
25884586 TTTTGATGTTTTTTTTATTT-TAATGTTTTTT-TTATTTTATCA
1 TTTT-AT-TTTTTTTT-TTTAT-AT-TTTTTTATT-TTTTAT-A
*
25884628 TTTT-TTTACTTGGTTTATTT-TA-TTTTTTATATTTTTATA
1 TTTTATTT--TT--TTTTTTTATATTTTTTTAT-TTTTTATA
* ** *
25884667 TTATATTTATTTTTGATTATATTTTTTTTTTTTTTAT-
1 TTTTATTT-TTTTTTTTTATATTTTTTTATTTTTTATA
* *
25884704 TATTTA-TTTTATTTTTTAT-TTTTGTTT-TTGTCTTT-TT
1 T-TTTATTTTTTTTTTTTATATTTT-TTTATT-T-TTTATA
* *
25884741 TTTTATTATTTTTTTTT-T-TTTTTTTATTATTTTTATT
1 TTTTATTTTTTTTTTTTATATTTTTTTA-T-TTTTTATA
* *
25884778 TTTTATTGTTTTTTTTT-TA-TGTTTT-TTTTTTAT-
1 TTTTATTTTTTTTTTTTATATTTTTTTATTTTTTATA
*
25884811 TTTTAATTTTTATTTAATTTTGATATGTTTTT-TTTTTT-T-
1 TTTT-ATTTTT-TTT--TTTT-ATATTTTTTTATTTTTTATA
* *
25884850 TTTT-TTTTTTGTTTTTAT-TTTATTTA-TTTTTATA
1 TTTTATTTTTTTTTTTTATATTTTTTTATTTTTTATA
** *
25884884 ---TA-TTTTTTTTTGGAT-TTTTTTTATTTTTTTATT
1 TTTTATTTTTTTTTTTTATATTTTTTTA-TTTTTTATA
*
25884917 TTTTATTTTTTGTTTTATATATTATTTTT-TTTTTTATA
1 TTTTATTTTTT-TTTTTTATATT-TTTTTATTTTTTATA
* *
25884955 -TTT-TTTTATTTATTTATAATTTTATTT-TTTTTT-T-
1 TTTTATTTTTTTTTTTTAT-ATTTT-TTTATTTTTTATA
* * * * * *
25884989 TTTT-TTTTATATTTTTATTATATCTATATTTGTATATA
1 TTTTATTTTTTTTTTTTA-TATTTTTTTATTT-TTTATA
25885027 TTTT-TTATTTAATTTTTTTATATTTTT
1 TTTTATT-TTT--TTTTTTTATATTTTT
25885054 ATATCACCAA
Statistics
Matches: 565, Mismatches: 83, Indels: 168
0.69 0.10 0.21
Matches are distributed among these distances:
31 18 0.03
32 10 0.02
33 14 0.02
34 30 0.05
35 82 0.15
36 87 0.15
37 78 0.14
38 36 0.06
39 59 0.10
40 65 0.12
41 51 0.09
42 28 0.05
43 7 0.01
ACGTcount: A:0.18, C:0.01, G:0.03, T:0.78
Consensus pattern (37 bp):
TTTTATTTTTTTTTTTTATATTTTTTTATTTTTTATA
Found at i:25885004 original size:1 final size:1
Alignment explanation
Indices: 25884688--25884996 Score: 141
Period size: 1 Copynumber: 309.0 Consensus size: 1
25884678 TTTGATTATA
* * * * * * * * * *
25884688 TTTTTTTTTTTTTTATTATTTATTTTATTTTTTATTTTTGTTTTTGTCTTTTTTTTTATTATTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * * * * **
25884753 TTTTTTTTTTTTTATTATTTTTATTTTTTATTGTTTTTTTTTTATGTTTTTTTTTTATTTTTAAT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* ** ** * * * * * * *
25884818 TTTTATTTAATTTTGATATGTTTTTTTTTTTTTTTTTTTTTTGTTTTTATTTTATTTATTTTTAT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *** * * * * * * * *
25884883 ATATTTTTTTTTGGATTTTTTTTATTTTTTTATTTTTTATTTTTTGTTTTATATATTATTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * ** *
25884948 TTTTATATTTTTTTATTTATTTATAATTTTATTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
25884997 ATATTTTTAT
Statistics
Matches: 212, Mismatches: 96, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
1 212 1.00
ACGTcount: A:0.14, C:0.00, G:0.03, T:0.83
Consensus pattern (1 bp):
T
Found at i:25889251 original size:29 final size:29
Alignment explanation
Indices: 25889199--25889270 Score: 92
Period size: 29 Copynumber: 2.4 Consensus size: 29
25889189 TTCAATCAAC
* *
25889199 TCTTTTTTTTTTCAATTTTCAATTTTTTCT
1 TCTTCTTTTTTTCAATTCTCAATTTTTT-T
*
25889229 TCTTCTTTTTTT-AATTCTGAATTTTTTT
1 TCTTCTTTTTTTCAATTCTCAATTTTTTT
25889257 TCTTCTTCTTTTTC
1 TCTTCTT-TTTTTC
25889271 TTCATAACTA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 8 0.22
29 18 0.49
30 11 0.30
ACGTcount: A:0.11, C:0.15, G:0.01, T:0.72
Consensus pattern (29 bp):
TCTTCTTTTTTTCAATTCTCAATTTTTTT
Found at i:25889329 original size:11 final size:10
Alignment explanation
Indices: 25889314--25889351 Score: 67
Period size: 10 Copynumber: 3.7 Consensus size: 10
25889304 AATACAAACT
25889314 TTTTTTTGAA
1 TTTTTTTGAA
25889324 TTTTTTTGAA
1 TTTTTTTGAA
25889334 TTTTTTTGACA
1 TTTTTTTGA-A
25889345 TTTTTTT
1 TTTTTTT
25889352 ATTATTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 19 0.70
11 8 0.30
ACGTcount: A:0.16, C:0.03, G:0.08, T:0.74
Consensus pattern (10 bp):
TTTTTTTGAA
Found at i:25889359 original size:20 final size:19
Alignment explanation
Indices: 25889314--25889362 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 19
25889304 AATACAAACT
25889314 TTTTTTTGAATTTTTTTGAA
1 TTTTTTTGAATTTTTTT-AA
25889334 TTTTTTTGACATTTTTTTATTA
1 TTTTTTTGA-ATTTTTTTA--A
25889356 TTTTTTT
1 TTTTTTT
25889363 ACAATACCGT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 10 0.38
21 8 0.31
22 8 0.31
ACGTcount: A:0.16, C:0.02, G:0.06, T:0.76
Consensus pattern (19 bp):
TTTTTTTGAATTTTTTTAA
Found at i:25902121 original size:39 final size:39
Alignment explanation
Indices: 25901917--25902139 Score: 232
Period size: 40 Copynumber: 5.6 Consensus size: 39
25901907 TTGAATGCTG
* * * * * *
25901917 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
* * *
25901957 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
*
25901997 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* **
25902037 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTAAA
* *
25902077 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
25902116 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
25902140 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 20, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
39 39 0.25
40 109 0.69
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:25902159 original size:79 final size:80
Alignment explanation
Indices: 25901992--25902174 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
25901982 GTGCGAGATA
* * *
25901992 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
25902057 CAGTCGTGCGAGTTG
66 CAGTCGAACGAGGAG
* * * *
25902072 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
* *
25902136 CATTTGAACGAGGAG
66 CAGTCGAACGAGGAG
* *
25902151 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
25902175 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 45 0.52
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CAGTCGAACGAGGAG
Found at i:25905931 original size:12 final size:12
Alignment explanation
Indices: 25905914--25905938 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25905904 CACGCCCATA
25905914 TGCTAGGTCGTG
1 TGCTAGGTCGTG
25905926 TGCTAGGTCGTG
1 TGCTAGGTCGTG
25905938 T
1 T
25905939 AACAACTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.40, T:0.36
Consensus pattern (12 bp):
TGCTAGGTCGTG
Found at i:25906823 original size:15 final size:16
Alignment explanation
Indices: 25906794--25906823 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25906784 CAAACATGCT
25906794 TTAACACATTATCAAA
1 TTAACACATTATCAAA
25906810 TTAACACA-TATCAA
1 TTAACACATTATCAA
25906824 CAAGGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:25907384 original size:26 final size:27
Alignment explanation
Indices: 25907355--25907437 Score: 93
Period size: 26 Copynumber: 3.2 Consensus size: 27
25907345 TATATTGAAC
*
25907355 AAATTTTCTCAAATTTTAC-AGGGGTA
1 AAATTGTCTCAAATTTTACTAGGGGTA
* *
25907381 AAATTGTCTC-ATTTTTACTATGGGTA
1 AAATTGTCTCAAATTTTACTAGGGGTA
* *
25907407 AAATTGTC-AAAATTTTACTA-GAGTA
1 AAATTGTCTCAAATTTTACTAGGGGTA
25907432 AAATTG
1 AAATTG
25907438 GAATAAGAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
25 17 0.35
26 32 0.65
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.40
Consensus pattern (27 bp):
AAATTGTCTCAAATTTTACTAGGGGTA
Found at i:25910070 original size:325 final size:324
Alignment explanation
Indices: 25909481--25910133 Score: 1198
Period size: 325 Copynumber: 2.0 Consensus size: 324
25909471 CAAATTCTCT
25909481 TTTCTCATTCTGGTAGTTTCTAGGTTCCTTTTCCTAAAGGACTTCTACTCATTTCCATAGCCAAA
1 TTTCTCATTCTGGTAGTTTCTAGGTTCCTTTTCCTAAAGGACTTCTACTCATTTCCATAGCCAAA
*
25909546 CTTTAACTTAATACACCCCAATCCCTATATTTAACATCCTAGCGATGACCCCGTCTTTAATGTCC
66 CTTTAACTTAATACACCCCAATCCCCATATTTAACATCCTAGCGATGACCCCGTCTTTAATGTCC
*
25909611 CATCGGACTTCCCATTTTTATCGTCTTGAAAGGCTATCTATTTTTAACATCCCATCAGACTACTT
131 CATCGGACTTCCCATTTTTATCATCTTGAAAGGCTATCTATTTTTAACATCCCATCAGACTACTT
* * *
25909676 GAGTTGCCATATCCTAAATATGGTTTTACACCTTATATTTCCCATGTTTACTATTACGGTAGACT
196 GAGTTGCCATATCCCAAATATGGTTTTACACATTATATTTCCCATGTTTACTATCACGGTAGACT
25909741 ACTAGGAAGCCATATCTTCTTTCAACTATGGTCTTAGTCCCATTTACCTTGATGTCATGACGTC
261 ACTAGGAAGCCATATCTTCTTTCAACTATGGTCTTAGTCCCATTTACCTTGATGTCATGACGTC
25909805 TTTCTCATTCTGGTAGTTTCTAGGTTCCTTTTCCTAAAGGACTTCTACTCATTTCCATAGCCAAA
1 TTTCTCATTCTGGTAGTTTCTAGGTTCCTTTTCCTAAAGGACTTCTACTCATTTCCATAGCCAAA
* * *
25909870 CTTTAACTTAATACACCCTAGTCCCCATGTTTAACATCCTAGCAGATGACCCCGTCTTTAATGTC
66 CTTTAACTTAATACACCCCAATCCCCATATTTAACATCCTAGC-GATGACCCCGTCTTTAATGTC
* *
25909935 CCATCGGACTTTCCATTTTTATCATCTTGAAAGGCTATCTATTTTTAACATCCCATTAGACTACT
130 CCATCGGACTTCCCATTTTTATCATCTTGAAAGGCTATCTATTTTTAACATCCCATCAGACTACT
*
25910000 TGAGTTGCCATATCCCAGATATGGTTTTACACATTATATTTCCCATGTTTACTATCACGGTAGAC
195 TGAGTTGCCATATCCCAAATATGGTTTTACACATTATATTTCCCATGTTTACTATCACGGTAGAC
25910065 TACTAGGAAGCCATATCTTCTTTCAACTATGGTCTTAGTCCCATTTACCTTGATGTCATGACGTC
260 TACTAGGAAGCCATATCTTCTTTCAACTATGGTCTTAGTCCCATTTACCTTGATGTCATGACGTC
25910130 TTTC
1 TTTC
25910134 AGCTATGGTT
Statistics
Matches: 317, Mismatches: 11, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
324 104 0.33
325 213 0.67
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.38
Consensus pattern (324 bp):
TTTCTCATTCTGGTAGTTTCTAGGTTCCTTTTCCTAAAGGACTTCTACTCATTTCCATAGCCAAA
CTTTAACTTAATACACCCCAATCCCCATATTTAACATCCTAGCGATGACCCCGTCTTTAATGTCC
CATCGGACTTCCCATTTTTATCATCTTGAAAGGCTATCTATTTTTAACATCCCATCAGACTACTT
GAGTTGCCATATCCCAAATATGGTTTTACACATTATATTTCCCATGTTTACTATCACGGTAGACT
ACTAGGAAGCCATATCTTCTTTCAACTATGGTCTTAGTCCCATTTACCTTGATGTCATGACGTC
Found at i:25910177 original size:45 final size:45
Alignment explanation
Indices: 25910128--25910241 Score: 156
Period size: 45 Copynumber: 2.5 Consensus size: 45
25910118 TGTCATGACG
* * * **
25910128 TCTTTCAGCTATGGTTTTACTCATTTATATCATGACGTTGTAGCA
1 TCTTTCAACTATGGTCTTACTCATTTATAGCATGACGTCATAGCA
* * *
25910173 TCTTTCAACTATGGTCTTACTCATTTATAGCGTGATGTCATAGCG
1 TCTTTCAACTATGGTCTTACTCATTTATAGCATGACGTCATAGCA
25910218 TCTTTCAACTATGGTCTTACTCAT
1 TCTTTCAACTATGGTCTTACTCAT
25910242 CTGTAGGCAT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 61 1.00
ACGTcount: A:0.22, C:0.20, G:0.15, T:0.43
Consensus pattern (45 bp):
TCTTTCAACTATGGTCTTACTCATTTATAGCATGACGTCATAGCA
Found at i:25913348 original size:43 final size:40
Alignment explanation
Indices: 25913270--25913354 Score: 109
Period size: 42 Copynumber: 2.0 Consensus size: 40
25913260 GGAGTGACTT
*
25913270 AAGGGGAAGAAAAGGAAGGTGGGGGAACAATGGGAGTAAA
1 AAGGGGAAGAAAAGGAAGGTGGGGGAACAATGGGAGCAAA
*
25913310 AAGGGGAAGAAGAAAGGAAGGTGGAGAGGAATAA-GGGAGCAAA
1 AAGGGGAAG-A-AAAGGAAGGTGG-G-GGAACAATGGGAGCAAA
25913353 AA
1 AA
25913355 ATATTTCCTC
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
40 9 0.23
41 1 0.03
42 12 0.31
43 11 0.28
44 6 0.15
ACGTcount: A:0.48, C:0.02, G:0.44, T:0.06
Consensus pattern (40 bp):
AAGGGGAAGAAAAGGAAGGTGGGGGAACAATGGGAGCAAA
Found at i:25915764 original size:29 final size:28
Alignment explanation
Indices: 25915728--25915805 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
25915718 TCATGAGATT
25915728 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
25915758 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
25915785 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
25915806 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:25916072 original size:173 final size:174
Alignment explanation
Indices: 25915758--25916084 Score: 566
Period size: 173 Copynumber: 1.9 Consensus size: 174
25915748 AAATTGTACA
* *
25915758 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* *
25915823 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
25915888 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * **
25915932 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACGTTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
25915997 TGTGC-AACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
25916061 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
25916085 ACCTTGAGTT
Statistics
Matches: 144, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
173 81 0.56
174 63 0.44
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:25923913 original size:29 final size:28
Alignment explanation
Indices: 25923877--25923954 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
25923867 TCATGAGATT
25923877 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
25923907 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
25923934 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
25923955 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:25924221 original size:173 final size:174
Alignment explanation
Indices: 25923907--25924233 Score: 575
Period size: 173 Copynumber: 1.9 Consensus size: 174
25923897 AAATTGTACA
* *
25923907 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* *
25923972 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
25924037 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
25924081 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
25924146 TGTGC-AACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
25924210 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
25924234 ACCTTGAGTT
Statistics
Matches: 145, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
173 81 0.56
174 64 0.44
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:25926941 original size:13 final size:14
Alignment explanation
Indices: 25926913--25926942 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
25926903 GTTAAATTGG
25926913 AAAGATGATAAAAT
1 AAAGATGATAAAAT
25926927 AAAGATGAT-AAAT
1 AAAGATGATAAAAT
25926940 AAA
1 AAA
25926943 TTAAATAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.44
14 9 0.56
ACGTcount: A:0.67, C:0.00, G:0.13, T:0.20
Consensus pattern (14 bp):
AAAGATGATAAAAT
Found at i:25927857 original size:25 final size:25
Alignment explanation
Indices: 25927823--25928035 Score: 184
Period size: 25 Copynumber: 8.6 Consensus size: 25
25927813 CACACCACAA
* *
25927823 CTCTTATGAGCGTCCCGATATTTGG
1 CTCTCATGAGCTTCCCGATATTTGG
*
25927848 CTCTCATGAGCTTCCCGTTATTTGG
1 CTCTCATGAGCTTCCCGATATTTGG
* * *
25927873 CTCCCACGAGCTTCCCGATAATTGG
1 CTCTCATGAGCTTCCCGATATTTGG
* * * *
25927898 CTTTCATGAGCTTTCTGAT-TAATGG
1 CTCTCATGAGCTTCCCGATAT-TTGG
**
25927923 CTCTCCGGAGCTTCCCGATA-TTGG
1 CTCTCATGAGCTTCCCGATATTTGG
*
25927947 CTCGT-ATGAGCTTCCCGATATTTGA
1 CTC-TCATGAGCTTCCCGATATTTGG
* *
25927972 CTCTCTTGAGCTTCTC-AT-TTATGG
1 CTCTCATGAGCTTCCCGATATT-TGG
* * **
25927996 CTCTTATGAGCTTCCCGTTACATGG
1 CTCTCATGAGCTTCCCGATATTTGG
*
25928021 CTCACATGAGCTTCC
1 CTCTCATGAGCTTCC
25928036 TATTATATGG
Statistics
Matches: 146, Mismatches: 34, Indels: 16
0.74 0.17 0.08
Matches are distributed among these distances:
23 2 0.01
24 37 0.25
25 107 0.73
ACGTcount: A:0.16, C:0.28, G:0.20, T:0.36
Consensus pattern (25 bp):
CTCTCATGAGCTTCCCGATATTTGG
Found at i:25927976 original size:49 final size:50
Alignment explanation
Indices: 25927830--25928012 Score: 164
Period size: 49 Copynumber: 3.7 Consensus size: 50
25927820 CAACTCTTAT
* *
25927830 GAGCGTCCCGATATTTGGCTC-TCATGAGCTTCCCGTTATTTGGCTC-CCAC
1 GAGCTTCCCGATA-TTGGCTCTTCATGAGCTTCCCGATATTTGGCTCTCC-C
* * * *
25927880 GAGCTTCCCGATAATTGGCT-TTCATGAGCTTTCTGAT-TAATGGCTCTCCG
1 GAGCTTCCCGAT-ATTGGCTCTTCATGAGCTTCCCGATAT-TTGGCTCTCCC
* * **
25927930 GAGCTTCCCGATATTGGCTCGT-ATGAGCTTCCCGATATTTGACTCTCTT
1 GAGCTTCCCGATATTGGCTCTTCATGAGCTTCCCGATATTTGGCTCTCCC
* *
25927979 GAGCTTCTC-ATTTATGGCTCTT-ATGAGCTTCCCG
1 GAGCTTCCCGATAT-TGGCTCTTCATGAGCTTCCCG
25928013 TTACATGGCT
Statistics
Matches: 110, Mismatches: 16, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
48 3 0.03
49 54 0.49
50 50 0.45
51 3 0.03
ACGTcount: A:0.16, C:0.27, G:0.21, T:0.36
Consensus pattern (50 bp):
GAGCTTCCCGATATTGGCTCTTCATGAGCTTCCCGATATTTGGCTCTCCC
Found at i:25927982 original size:74 final size:74
Alignment explanation
Indices: 25927845--25928035 Score: 222
Period size: 74 Copynumber: 2.6 Consensus size: 74
25927835 TCCCGATATT
* * * * *
25927845 TGGCTCTCATGAGCTTCCCGTTATTTGGCTCCCACGAGCTTCCCGATAATTGGCTTTCATGAGCT
1 TGGCTCTCATGAGCTTCCCGTTACTTGGCTCACATGAGCTTCCCGATAATTGACTCTCATGAGC-
*
25927910 TTCTGATTAA
65 TTCTCATTAA
** * ** * *
25927920 TGGCTCTCCGGAGCTTCCCGATA-TTGGCTCGTATGAGCTTCCCGATATTTGACTCTCTTGAGCT
1 TGGCTCTCATGAGCTTCCCGTTACTTGGCTCACATGAGCTTCCCGATAATTGACTCTCATGAGCT
*
25927984 TCTCATTTA
66 TCTCATTAA
* *
25927993 TGGCTCTTATGAGCTTCCCGTTACATGGCTCACATGAGCTTCC
1 TGGCTCTCATGAGCTTCCCGTTACTTGGCTCACATGAGCTTCC
25928036 TATTATATGG
Statistics
Matches: 96, Mismatches: 19, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
73 27 0.28
74 49 0.51
75 20 0.21
ACGTcount: A:0.16, C:0.28, G:0.20, T:0.36
Consensus pattern (74 bp):
TGGCTCTCATGAGCTTCCCGTTACTTGGCTCACATGAGCTTCCCGATAATTGACTCTCATGAGCT
TCTCATTAA
Found at i:25928031 original size:49 final size:50
Alignment explanation
Indices: 25927944--25928069 Score: 139
Period size: 49 Copynumber: 2.5 Consensus size: 50
25927934 TTCCCGATAT
* ** * *
25927944 TGGCTCGTATGAGCTTCCCGATATTTGACTCTCTTGAGCTT-CTCATT-TA
1 TGGCTCGTATGAGCTTCCCGTTACATGACTCACATGAGCTTCCT-ATTATA
* *
25927993 TGGCTCTTATGAGCTTCCCGTTACATGGCTCACATGAGCTTCCTATTATA
1 TGGCTCGTATGAGCTTCCCGTTACATGACTCACATGAGCTTCCTATTATA
* * *
25928043 TGGCTCGAAAGAGCTTCACGTTACATG
1 TGGCTCGTATGAGCTTCCCGTTACATG
25928070 CTTGTATGAG
Statistics
Matches: 64, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
49 37 0.58
50 27 0.42
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.36
Consensus pattern (50 bp):
TGGCTCGTATGAGCTTCCCGTTACATGACTCACATGAGCTTCCTATTATA
Found at i:25928045 original size:25 final size:25
Alignment explanation
Indices: 25927978--25928048 Score: 74
Period size: 25 Copynumber: 2.9 Consensus size: 25
25927968 TTGACTCTCT
**
25927978 TGAGCTT-CTCATT-TATGGCTCTTA
1 TGAGCTTCCT-ATTATATGGCTCACA
** *
25928002 TGAGCTTCCCGTTACATGGCTCACA
1 TGAGCTTCCTATTATATGGCTCACA
25928027 TGAGCTTCCTATTATATGGCTC
1 TGAGCTTCCTATTATATGGCTC
25928049 GAAAGAGCTT
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
24 9 0.24
25 28 0.76
ACGTcount: A:0.18, C:0.25, G:0.18, T:0.38
Consensus pattern (25 bp):
TGAGCTTCCTATTATATGGCTCACA
Found at i:25940906 original size:228 final size:228
Alignment explanation
Indices: 25940509--25940966 Score: 889
Period size: 228 Copynumber: 2.0 Consensus size: 228
25940499 TAGATTCTAT
*
25940509 TGTTGCTGCTAGGTAAAGAATTGTTATCATTTCTTTGTAGTGATTAAGATTTTATTGTGTTCTTG
1 TGTTGCTGCTAGGTAAAGAATTGTTATCACTTCTTTGTAGTGATTAAGATTTTATTGTGTTCTTG
25940574 TCATATTGATCATGGTATTCAATAAACAGTCATTATCCTCTCTCAATTATTTTGATTGGAGTGGG
66 TCATATTGATCATGGTATTCAATAAACAGTCATTATCCTCTCTCAATTATTTTGATTGGAGTGGG
*
25940639 GGATGGACCATGGGATTCAATGCAACAATTGGATGATAATATTCCACATCGCGCCTTTGACAACT
131 GGATGGACCATGGGATTCAATGCAACAATTGGATGATAATATTCCACATCGCGCCCTTGACAACT
25940704 TCCAGGTATGTCAGCAATTTCTCTAAATCAATA
196 TCCAGGTATGTCAGCAATTTCTCTAAATCAATA
25940737 TGTTGCTGCTAGGTAAAGAATTGTTATCACTTCTTTGTAGTGATTAAGATTTTATTGTGTTCTTG
1 TGTTGCTGCTAGGTAAAGAATTGTTATCACTTCTTTGTAGTGATTAAGATTTTATTGTGTTCTTG
25940802 TCATATTGATCATGGTATTCAATAAACAGTCATTATCCTCTCTCAATTATTTTGATTGGAGTGGG
66 TCATATTGATCATGGTATTCAATAAACAGTCATTATCCTCTCTCAATTATTTTGATTGGAGTGGG
*
25940867 GGATGGACCATGGGATTCAATGCAACAATTTGATGATAATATTCCACATCGCGCCCTTGACAACT
131 GGATGGACCATGGGATTCAATGCAACAATTGGATGATAATATTCCACATCGCGCCCTTGACAACT
25940932 TCCAGGTATGTCAGCAATTTCTCTAAATCAATA
196 TCCAGGTATGTCAGCAATTTCTCTAAATCAATA
25940965 TG
1 TG
25940967 CAAAGAGCAA
Statistics
Matches: 227, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
228 227 1.00
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.38
Consensus pattern (228 bp):
TGTTGCTGCTAGGTAAAGAATTGTTATCACTTCTTTGTAGTGATTAAGATTTTATTGTGTTCTTG
TCATATTGATCATGGTATTCAATAAACAGTCATTATCCTCTCTCAATTATTTTGATTGGAGTGGG
GGATGGACCATGGGATTCAATGCAACAATTGGATGATAATATTCCACATCGCGCCCTTGACAACT
TCCAGGTATGTCAGCAATTTCTCTAAATCAATA
Done.