Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 90 of 196
Found at i:25943498 original size:49 final size:49
Alignment explanation
Indices: 25943426--25943521 Score: 174
Period size: 49 Copynumber: 2.0 Consensus size: 49
25943416 AATTAAATTA
*
25943426 ACCATTATTAGCAGGTTTAGTTTCATGTAAGTCATGCATATATATATAT
1 ACCATTATTAGCAGGTTTAGTTTCATGTAAGTAATGCATATATATATAT
*
25943475 ACCATTATTAGCAGGTTTAGTTTCATTTAAGTAATGCATATATATAT
1 ACCATTATTAGCAGGTTTAGTTTCATGTAAGTAATGCATATATATAT
25943522 TAGTCATGCG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.42
Consensus pattern (49 bp):
ACCATTATTAGCAGGTTTAGTTTCATGTAAGTAATGCATATATATATAT
Found at i:25946688 original size:30 final size:30
Alignment explanation
Indices: 25946652--25946712 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
25946642 TAGAATTTTC
25946652 AAAATTATCGAAACATGAAGATGATAACAT
1 AAAATTATCGAAACATGAAGATGATAACAT
*
25946682 AAAATTATCGGAACATGAAGATGATAACAT
1 AAAATTATCGAAACATGAAGATGATAACAT
25946712 A
1 A
25946713 CTTAACTACA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.52, C:0.10, G:0.15, T:0.23
Consensus pattern (30 bp):
AAAATTATCGAAACATGAAGATGATAACAT
Found at i:25948835 original size:49 final size:50
Alignment explanation
Indices: 25948763--25949141 Score: 233
Period size: 50 Copynumber: 7.5 Consensus size: 50
25948753 CAAAGCTATG
* * * *
25948763 TCCCAGACATAGTCTTACATGAGATGTT-TCTTGTA-TTGCCAATGCCATA
1 TCCCAGACATGGTCTTACATGAGA-GTTCTCATATAGGTGCCAATGCCATA
* * *
25948812 TCCCAGATATGGTCTTACATGAGAGTTCTCATATAGGTGCCCATGCCATG
1 TCCCAGACATGGTCTTACATGAGAGTTCTCATATAGGTGCCAATGCCATA
** * ** * * * *
25948862 TCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGAGAGTTCTCATATAGGTGCCAATGCCATA
* * ** * * * * *
25948912 TCCCAGACATTGTCTTACATGGGACCTCTCATCTCGGTACCAACGCCATG
1 TCCCAGACATGGTCTTACATGAGAGTTCTCATATAGGTGCCAATGCCATA
* * ** * * * *
25948962 TACCAGACATGGTCTTACATGGGACCTCTTATCTCA-GTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGAGAGTTCTCATAT-AGGTGCCAATGCCATA
* * ** * * * *
25949012 TCCCAAACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGAGAGTTCTCATATAGGTGCCAATGCCATA
* *** ** *
25949062 TCCCATACATGGTCTTACATGAGACCCCTCATAATCTCAATAATGCCAATGCCATG
1 TCCCAGACATGGTCTTACATGAGAGTTCTCAT-A--T--A-GGTGCCAATGCCATA
25949118 TCCCAGACATGGTCTTACATGAGA
1 TCCCAGACATGGTCTTACATGAGA
25949142 TCTCTTTACC
Statistics
Matches: 280, Mismatches: 40, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
48 3 0.01
49 27 0.10
50 214 0.76
53 1 0.00
56 35 0.12
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGAGAGTTCTCATATAGGTGCCAATGCCATA
Found at i:25948867 original size:50 final size:50
Alignment explanation
Indices: 25948799--25949138 Score: 385
Period size: 50 Copynumber: 6.7 Consensus size: 50
25948789 TTTCTTGTAT
* * * * ** *
25948799 TGCCAATGCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
* * ** *
25948849 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
* *
25948899 TGCCAACGCCATGTCCCAGACATTGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
* * *
25948949 TACCAACGCCATGTACCAGACATGGTCTTACATGGGACCTCTTATCTCA-G
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-AGG
* *
25948999 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
* * * **
25949049 TGCCAACGCCATGTCCCATACATGGTCTTACATGAGACCCCTCATAATCTCAATAA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA--CCTC-TCATCT--A-GG
*
25949105 TGCCAATGCCATGTCCCAGACATGGTCTTACATG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATG
25949139 AGATCTCTTT
Statistics
Matches: 248, Mismatches: 34, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
50 207 0.83
52 4 0.02
53 5 0.02
56 32 0.13
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
Found at i:25953165 original size:37 final size:37
Alignment explanation
Indices: 25953115--25953193 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
25953105 TTATTACGAA
* * *
25953115 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
25953152 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
25953189 GTCTT
1 GTCTT
25953194 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:25953383 original size:47 final size:47
Alignment explanation
Indices: 25953314--25953439 Score: 189
Period size: 47 Copynumber: 2.7 Consensus size: 47
25953304 CTTCGGGACT
* * * * *
25953314 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
* *
25953361 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
25953408 TATCACATATATACACTTTCACATTCATCACA
1 TATCACATATATACACTTTCACATTCATCACA
25953440 CATTAATCAG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.29, C:0.32, G:0.07, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCC
Found at i:25953590 original size:47 final size:47
Alignment explanation
Indices: 25953521--25953986 Score: 790
Period size: 47 Copynumber: 9.7 Consensus size: 47
25953511 CCCTTCGGGA
*
25953521 CTTATCACATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25953568 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25953615 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25953664 CTTATCACATATATATACCCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25953713 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25953760 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTGGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25953809 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25953858 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25953905 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
25953952 CTTATCACATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
25953987 AGAATCCTAA
Statistics
Matches: 406, Mismatches: 8, Indels: 10
0.96 0.02 0.02
Matches are distributed among these distances:
46 1 0.00
47 216 0.53
49 189 0.47
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:25953590 original size:209 final size:210
Alignment explanation
Indices: 25953230--25953650 Score: 772
Period size: 209 Copynumber: 2.0 Consensus size: 210
25953220 AAGCTTACGG
25953230 ACATTAATCAGTGATAATATTCTCGCATAAAGCCTGCGGGGTTTTAACCCGGATATAGTACTGAC
1 ACATTAATCAGTGATAATATTCTCGCATAAAGCCTGCGGGGTTTTAACCCGGATATAGTACTGAC
* * *
25953295 ACAAATGCCCTTCGGGACTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCC
66 ACAAATGCCCTTCGGGACTTATCACATTTATACACTTTCACATCCATCACATCGGCCACTAGGCC
25953360 CTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACAC
131 CTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACAC
25953424 TTTCACATTCATCAC
196 TTTCACATTCATCAC
25953439 ACATTAATCAGTGATAATATTCTCGCATAAAGCCTGCGGGGTTTTAACCCGGATATAGTACTGAC
1 ACATTAATCAGTGATAATATTCTCGCATAAAGCCTGCGGGGTTTTAACCCGGATATAGTACTGAC
* *
25953504 ACAAATGCCCTTCGGGACTTATCACATTTATACACTTTCACATTCATCACATCGGCCATTAGGCC
66 ACAAATGCCCTTCGGGACTTATCACATTTATACACTTTCACATCCATCACATCGGCCACTAGGCC
*
25953569 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
131 CTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACA
25953634 CTTTCACATTCATCAC
195 CTTTCACATTCATCAC
25953650 A
1 A
25953651 TCGGCCATTA
Statistics
Matches: 204, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
209 178 0.87
211 26 0.13
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.31
Consensus pattern (210 bp):
ACATTAATCAGTGATAATATTCTCGCATAAAGCCTGCGGGGTTTTAACCCGGATATAGTACTGAC
ACAAATGCCCTTCGGGACTTATCACATTTATACACTTTCACATCCATCACATCGGCCACTAGGCC
CTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACAC
TTTCACATTCATCAC
Found at i:25953648 original size:49 final size:49
Alignment explanation
Indices: 25953521--25953965 Score: 793
Period size: 49 Copynumber: 9.3 Consensus size: 49
25953511 CCCTTCGGGA
25953521 CTTATCACAT-T-TATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25953568 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25953615 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25953664 CTTATCACATATATATACCCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25953713 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25953760 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTGGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25953809 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25953858 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25953905 CTTATCAC--ATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25953952 CTTATCACATATAT
1 CTTATCACATATAT
25953966 GCATGTTCAC
Statistics
Matches: 385, Mismatches: 5, Indels: 14
0.95 0.01 0.03
Matches are distributed among these distances:
46 1 0.00
47 191 0.50
49 193 0.50
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:25953782 original size:145 final size:145
Alignment explanation
Indices: 25953521--25953965 Score: 835
Period size: 145 Copynumber: 3.1 Consensus size: 145
25953511 CCCTTCGGGA
25953521 CTTATCACAT-T-TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
25953584 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
25953649 CATCGGCCATTAGGC
131 CATCGGCCATTAGGC
*
25953664 CTTATCACATATATATACCCTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
25953729 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
*
25953794 CATCGGCCATTGGGC
131 CATCGGCCATTAGGC
25953809 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
25953874 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
*
25953937 CATCAGCCATTAGGC
131 CATCGGCCATTAGGC
25953952 CTTATCACATATAT
1 CTTATCACATATAT
25953966 GCATGTTCAC
Statistics
Matches: 295, Mismatches: 5, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
143 61 0.21
144 1 0.00
145 233 0.79
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (145 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
CATCGGCCATTAGGC
Found at i:25957216 original size:10 final size:10
Alignment explanation
Indices: 25957201--25957233 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
25957191 CCCTAAACTC
25957201 ATACATCCTT
1 ATACATCCTT
*
25957211 ATACATCCTC
1 ATACATCCTT
25957221 ATACATCCTT
1 ATACATCCTT
25957231 ATA
1 ATA
25957234 AACTGCCACT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.33, C:0.30, G:0.00, T:0.36
Consensus pattern (10 bp):
ATACATCCTT
Found at i:25957340 original size:43 final size:42
Alignment explanation
Indices: 25957233--25957362 Score: 145
Period size: 43 Copynumber: 3.0 Consensus size: 42
25957223 ACATCCTTAT
*
25957233 AAACTGCCACTAGGCTGTGGATGCACAATATATTTGCT-GATAA
1 AAACTGCCACTAGGCTGTGGGTGCACAA-ATATTTG-TAGATAA
* * * * *
25957276 AAATTGCCACTAAGTTATGGGTGCATAACATATTTGTAGATAA
1 AAACTGCCACTAGGCTGTGGGTGCACAA-ATATTTGTAGATAA
* *
25957319 AAACTGCCACTGGGCTGTGGGTGCACATAATATTTGCAGATAA
1 AAACTGCCACTAGGCTGTGGGTGCACA-AATATTTGTAGATAA
25957362 A
1 A
25957363 CTGCCATTGG
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
42 1 0.01
43 69 0.97
44 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (42 bp):
AAACTGCCACTAGGCTGTGGGTGCACAAATATTTGTAGATAA
Found at i:25969991 original size:29 final size:29
Alignment explanation
Indices: 25969948--25970245 Score: 380
Period size: 29 Copynumber: 10.2 Consensus size: 29
25969938 GTATTGATGC
*
25969948 CCATCGAATATGAAAAGGGATGGTTTTGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
* *
25969977 ACATCGAATATGAAAAGGGATGGTTTTGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
* **
25970006 CCATTGAATATGAAAAGGGATGGTGGCGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
* * *
25970035 CCATCGAATATGAAAAAAGGATGATTTTGA
1 CCATCGAATATG-AAAAGGGATGGTTTCGA
* **
25970065 CCATTGAATATGAAAAGGGATGGTGGCGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
25970094 CCATCGAATATGAAAAGGGATGGTTTCGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
** **
25970123 CCATTAAATATGAAAAGGGATGGTGGCGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
25970152 CCATCGAATATGAAAAGGGATGGTTTCGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
**
25970181 CCATCGAATATGAAAAGGGATGGTGACGA
1 CCATCGAATATGAAAAGGGATGGTTTCGA
* * * *
25970210 CCACCAAATATGAAAAAGGGATAGTTTTGA
1 CCATCGAATATG-AAAAGGGATGGTTTCGA
25970240 CCATCG
1 CCATCG
25970246 TTTAGCACAC
Statistics
Matches: 228, Mismatches: 39, Indels: 3
0.84 0.14 0.01
Matches are distributed among these distances:
29 188 0.82
30 40 0.18
ACGTcount: A:0.37, C:0.12, G:0.28, T:0.23
Consensus pattern (29 bp):
CCATCGAATATGAAAAGGGATGGTTTCGA
Found at i:25970043 original size:58 final size:58
Alignment explanation
Indices: 25969948--25970243 Score: 439
Period size: 58 Copynumber: 5.1 Consensus size: 58
25969938 GTATTGATGC
* *** *
25969948 CCATCGAATATGAAAAGGGATGGTTTTGAACATCGAATATGAAAAGGGATGGTTTTGA
1 CCATTGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAGGGATGGTTTTGA
* *
25970006 CCATTGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAAAGGATGATTTTGA
1 CCATTGAATATGAAAAGGGATGGTGGCGACCATCGAATATG-AAAAGGGATGGTTTTGA
*
25970065 CCATTGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAGGGATGGTTTCGA
1 CCATTGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAGGGATGGTTTTGA
* *
25970123 CCATTAAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAGGGATGGTTTCGA
1 CCATTGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAGGGATGGTTTTGA
* * * * *
25970181 CCATCGAATATGAAAAGGGATGGTGACGACCACCAAATATGAAAAAGGGATAGTTTTGA
1 CCATTGAATATGAAAAGGGATGGTGGCGACCATCGAATATG-AAAAGGGATGGTTTTGA
25970240 CCAT
1 CCAT
25970244 CGTTTAGCAC
Statistics
Matches: 218, Mismatches: 18, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
58 143 0.66
59 75 0.34
ACGTcount: A:0.37, C:0.12, G:0.28, T:0.23
Consensus pattern (58 bp):
CCATTGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAGGGATGGTTTTGA
Found at i:25970159 original size:117 final size:116
Alignment explanation
Indices: 25969948--25970243 Score: 448
Period size: 117 Copynumber: 2.5 Consensus size: 116
25969938 GTATTGATGC
*** * *
25969948 CCATCGAATATGAAAAGGGATGGTTTTGAACATCGAATATGAAAAGGGATGGTTTTGACCATTGA
1 CCATCGAATATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGATGGTTTTGACCATTAA
*
25970013 ATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAAAGGATGATTTTGA
66 ATATGAAAAGGGATGGTGGCGACCATCGAATATG-AAAAAGGATGATTTCGA
* * *
25970065 CCATTGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAGGGATGGTTTCGACCATTAA
1 CCATCGAATATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGATGGTTTTGACCATTAA
* *
25970130 ATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAGGGATGGTTTCGA
66 ATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAAGGATGATTTCGA
* * *
25970181 CCATCGAATATGAAAAGGGATGGTGACGACCACCAAATATGAAAAAGGGATAGTTTTGACCAT
1 CCATCGAATATGAAAAGGGATGGTGACGACCATCGAATATG-AAAAGGGATGGTTTTGACCAT
25970244 CGTTTAGCAC
Statistics
Matches: 162, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
116 51 0.31
117 111 0.69
ACGTcount: A:0.37, C:0.12, G:0.28, T:0.23
Consensus pattern (116 bp):
CCATCGAATATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGATGGTTTTGACCATTAA
ATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAAGGATGATTTCGA
Found at i:25971865 original size:20 final size:20
Alignment explanation
Indices: 25971840--25971878 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
25971830 GGCCGGGGAG
25971840 GAGAGGCTAAGGAAGCTTTA
1 GAGAGGCTAAGGAAGCTTTA
25971860 GAGAGGCTAAGGAAGCTTT
1 GAGAGGCTAAGGAAGCTTT
25971879 CTTCCAAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.10, G:0.36, T:0.21
Consensus pattern (20 bp):
GAGAGGCTAAGGAAGCTTTA
Found at i:25983491 original size:51 final size:50
Alignment explanation
Indices: 25983326--25983512 Score: 178
Period size: 51 Copynumber: 3.7 Consensus size: 50
25983316 AGTGAAAGTG
* *
25983326 ATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAATGAT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATC-GAATGGT
* * * * * ** * * *
25983377 A-GGTCCCATCTGTAGTACTATCTACAGGCTACTATGCATACCGGATAGT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAATGGT
* * * *
25983426 TTCGATCACGTGTGTAGTATTATGTGCAGGCTACTACGTGTATCGAATGGT
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAATGGT
* *
25983477 AATGGTCACATGTGTAGTACTATGTGTAGGATACTA
1 -ATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
25983513 TGTGAACCGA
Statistics
Matches: 101, Mismatches: 32, Indels: 6
0.73 0.23 0.04
Matches are distributed among these distances:
49 4 0.04
50 32 0.32
51 64 0.63
52 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (50 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAATGGT
Found at i:25983590 original size:45 final size:45
Alignment explanation
Indices: 25983523--25983610 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 45
25983513 TGTGAACCGA
** *
25983523 ACATCATTGATTGGTAAAGTGGTTGCTATGTGCTGATTCCACCAG
1 ACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCCACCAG
*
25983568 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACC
1 ACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCCACC
25983611 GAGTATCTGT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (45 bp):
ACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCCACCAG
Found at i:25989401 original size:45 final size:45
Alignment explanation
Indices: 25989329--25989423 Score: 154
Period size: 45 Copynumber: 2.1 Consensus size: 45
25989319 CTACTACTGA
* *
25989329 ACCGAACATCATTGATTAGTAAAGTGGTTGCTATGTGCTGATTCC
1 ACCGAACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCC
* *
25989374 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGAACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCC
25989419 ACCGA
1 ACCGA
25989424 GTATCTGTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCC
Found at i:25993613 original size:23 final size:23
Alignment explanation
Indices: 25993583--25993637 Score: 101
Period size: 23 Copynumber: 2.4 Consensus size: 23
25993573 GACATCGTAG
25993583 ATGGCTTGAGCTATTGAAAGACT
1 ATGGCTTGAGCTATTGAAAGACT
25993606 ATGGCTTGAGCTATTGAAAGACT
1 ATGGCTTGAGCTATTGAAAGACT
*
25993629 ATGACTTGA
1 ATGGCTTGA
25993638 TCAATGATTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (23 bp):
ATGGCTTGAGCTATTGAAAGACT
Found at i:25993836 original size:29 final size:29
Alignment explanation
Indices: 25993794--25993854 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
25993784 TTACAATAGA
25993794 TTGGCCAGGCTCAGAAATACGATAATGTG
1 TTGGCCAGGCTCAGAAATACGATAATGTG
25993823 TTGGCCAGGCTCAGAAATACGATAATGTG
1 TTGGCCAGGCTCAGAAATACGATAATGTG
25993852 TTG
1 TTG
25993855 TTAGCTAAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (29 bp):
TTGGCCAGGCTCAGAAATACGATAATGTG
Found at i:25997543 original size:33 final size:33
Alignment explanation
Indices: 25997506--25997573 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 33
25997496 GAATACTTTC
25997506 TTCACTCGTTTATTTTACAAGT-TCTCTTTCCTT
1 TTCACTCGTTTATTTTAC-AGTCTCTCTTTCCTT
* * *
25997539 TTCACTCGTTTCTTTTTCAGTCTCTCTTTCTTT
1 TTCACTCGTTTATTTTACAGTCTCTCTTTCCTT
25997572 TT
1 TT
25997574 TCACGCTCTC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
32 3 0.10
33 28 0.90
ACGTcount: A:0.10, C:0.25, G:0.06, T:0.59
Consensus pattern (33 bp):
TTCACTCGTTTATTTTACAGTCTCTCTTTCCTT
Found at i:25997575 original size:19 final size:19
Alignment explanation
Indices: 25997547--25997594 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
25997537 TTTTCACTCG
25997547 TTTC-TTTTTCA-GTCTCTC
1 TTTCTTTTTTCACG-CTCTC
25997565 TTTCTTTTTTCACGCTCTC
1 TTTCTTTTTTCACGCTCTC
*
25997584 -TTCTATTTTCA
1 TTTCTTTTTTCA
25997595 AGAACTCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 14 0.52
19 12 0.44
20 1 0.04
ACGTcount: A:0.08, C:0.27, G:0.04, T:0.60
Consensus pattern (19 bp):
TTTCTTTTTTCACGCTCTC
Found at i:26001838 original size:27 final size:27
Alignment explanation
Indices: 26001807--26001984 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
26001797 TAAATTGTAC
26001807 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
26001834 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
26001860 ATTCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
26001888 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
26001916 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26001943 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
26001970 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26001985 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:26001949 original size:82 final size:81
Alignment explanation
Indices: 26001808--26001963 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
26001798 AAATTGTACA
* * *
26001808 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATTCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
26001873 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** *
26001889 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
*
26001953 GTGCGAGTTGA
64 GTGCGAATTGA
26001964 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26001975 original size:82 final size:81
Alignment explanation
Indices: 26001804--26001984 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
26001794 GATTAAATTG
* * *
26001804 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATTCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26001869 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
26001885 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
26001949 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
26001967 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26001985 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26005792 original size:29 final size:29
Alignment explanation
Indices: 26005750--26006103 Score: 429
Period size: 29 Copynumber: 12.2 Consensus size: 29
26005740 ATATCGACGC
*
26005750 CCATCGAATATGAAAAGGGATGGTGGCGA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
* *
26005779 CCATCGAATATGAAAATGGATGGTTTCGA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
* * * *
26005808 CCATGGAATATGAAAAGGGATAGTTTCCA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
* * *
26005837 CCATCAAATATGAAAAGGGTTGGTGACGA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
*
26005866 CCATCGAATATGAAAAGGGATGGTGGCGA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
* * *
26005895 CCATCGAATATGAAAAAGGATGGTTTCAA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
* * * * *
26005924 CCATGGAATATGGAAAGGGATAGTTTCCA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
* *
26005953 CCATCAAATATGAAAAGGGATGGTGACGA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
*
26005982 CCATCGAATATGAAAAGGGATGGTGACGA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
* * *
26006011 CCATCGAATATGAAAAGGGATGCTTTCGG
1 CCATCGAATATGAAAAGGGATGGTGTCGA
* * *
26006040 CCATCTAATATGAAAAGGGATGGTGACAA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
* *
26006069 CCATTGAATATGAAAAGGGATGGTTTCGA
1 CCATCGAATATGAAAAGGGATGGTGTCGA
*
26006098 TCATCG
1 CCATCG
26006104 TTTAGCACAC
Statistics
Matches: 274, Mismatches: 51, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 274 1.00
ACGTcount: A:0.36, C:0.14, G:0.27, T:0.22
Consensus pattern (29 bp):
CCATCGAATATGAAAAGGGATGGTGTCGA
Found at i:26006103 original size:116 final size:116
Alignment explanation
Indices: 26005745--26006092 Score: 543
Period size: 116 Copynumber: 3.0 Consensus size: 116
26005735 ACGACATATC
* *
26005745 GACGCCCATCGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAATGGATGGTTTCGACC
1 GACGACCATCGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAAGGATGGTTTCGACC
*
26005810 ATGGAATATGAAAAGGGATAGTTTCCACCATCAAATATGAAAAGGGTTGGT
66 ATGGAATATGAAAAGGGATAGTTTCCACCATCAAATATGAAAAGGGATGGT
*
26005861 GACGACCATCGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAAGGATGGTTTCAACC
1 GACGACCATCGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAAGGATGGTTTCGACC
*
26005926 ATGGAATATGGAAAGGGATAGTTTCCACCATCAAATATGAAAAGGGATGGT
66 ATGGAATATGAAAAGGGATAGTTTCCACCATCAAATATGAAAAGGGATGGT
* * * *
26005977 GACGACCATCGAATATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGATGCTTTCGGCC
1 GACGACCATCGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAAGGATGGTTTCGACC
** * ** * **
26006042 ATCTAATATGAAAAGGGATGGTGACAACCATTGAATATGAAAAGGGATGGT
66 ATGGAATATGAAAAGGGATAGTTTCCACCATCAAATATGAAAAGGGATGGT
26006093 TTCGATCATC
Statistics
Matches: 213, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
116 213 1.00
ACGTcount: A:0.37, C:0.14, G:0.28, T:0.21
Consensus pattern (116 bp):
GACGACCATCGAATATGAAAAGGGATGGTGGCGACCATCGAATATGAAAAAGGATGGTTTCGACC
ATGGAATATGAAAAGGGATAGTTTCCACCATCAAATATGAAAAGGGATGGT
Found at i:26012150 original size:43 final size:41
Alignment explanation
Indices: 26012083--26012366 Score: 255
Period size: 43 Copynumber: 6.7 Consensus size: 41
26012073 AAAATCTATG
* **
26012083 ATACGGGGAATCAGCACATAGCAACCCCTTTCATAATTAAGG
1 ATACGGGGAATCAGCACTTAGCAACCCCTTT-ATAATTAAAA
* * ***
26012125 ATTCGGTGGAATCAGCACTTAGCAACCACCTTTATATTTAGTG
1 ATACGG-GGAATCAGCACTTAGCAACC-CCTTTATAATTAAAA
* *
26012168 ATACGGGGAATCAGCACTTAGCAACCCCATTCACAATTAAAA
1 ATACGGGGAATCAGCACTTAGCAACCCC-TTTATAATTAAAA
* * * **
26012210 ATACGGTGGATTCAACACATAGCAACCACCTTTAT-ATTCAACG
1 ATACGG-GGAATCAGCACTTAGCAACC-CCTTTATAATT-AAAA
*
26012253 ATACGGGGAATCAGCACTTAGCAACCCCTTTCACAATTAAAA
1 ATACGGGGAATCAGCACTTAGCAACCCCTTT-ATAATTAAAA
* * * * * *
26012295 ATACGGTGGGATCAGCAGTTAGCAACCACCTTTAGAGTCAATA
1 ATACGG-GGAATCAGCACTTAGCAACC-CCTTTATAATTAAAA
* *
26012338 ATTCAGGGAATCAGCACTTAGCAACCCCT
1 ATACGGGGAATCAGCACTTAGCAACCCCT
26012367 CAGGGAATCA
Statistics
Matches: 197, Mismatches: 35, Indels: 21
0.78 0.14 0.08
Matches are distributed among these distances:
41 10 0.05
42 85 0.43
43 90 0.46
44 12 0.06
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.24
Consensus pattern (41 bp):
ATACGGGGAATCAGCACTTAGCAACCCCTTTATAATTAAAA
Found at i:26012178 original size:85 final size:85
Alignment explanation
Indices: 26012080--26012366 Score: 403
Period size: 85 Copynumber: 3.4 Consensus size: 85
26012070 TATAAAATCT
* * ** *
26012080 ATGATACGGGGAATCAGCACATAGCAACCCCTTTCATAATTAAGGATTCGGTGGAATCAGCACTT
1 ATGATACGGGGAATCAGCACTTAGCAACCCCTTTCACAATTAAAAATACGGTGGAATCAGCACTT
*
26012145 AGCAACCACCTTTATATTTA
66 AGCAACCACCTTTATATTCA
* * * * *
26012165 GTGATACGGGGAATCAGCACTTAGCAACCCCATTCACAATTAAAAATACGGTGGATTCAACACAT
1 ATGATACGGGGAATCAGCACTTAGCAACCCCTTTCACAATTAAAAATACGGTGGAATCAGCACTT
26012230 AGCAACCACCTTTATATTCA
66 AGCAACCACCTTTATATTCA
* * *
26012250 ACGATACGGGGAATCAGCACTTAGCAACCCCTTTCACAATTAAAAATACGGTGGGATCAGCAGTT
1 ATGATACGGGGAATCAGCACTTAGCAACCCCTTTCACAATTAAAAATACGGTGGAATCAGCACTT
* *
26012315 AGCAACCACCTTTAGAGTCA
66 AGCAACCACCTTTATATTCA
* * *
26012335 ATAATTCAGGGAATCAGCACTTAGCAACCCCT
1 ATGATACGGGGAATCAGCACTTAGCAACCCCT
26012367 CAGGGAATCA
Statistics
Matches: 177, Mismatches: 25, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
85 177 1.00
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.24
Consensus pattern (85 bp):
ATGATACGGGGAATCAGCACTTAGCAACCCCTTTCACAATTAAAAATACGGTGGAATCAGCACTT
AGCAACCACCTTTATATTCA
Found at i:26012369 original size:26 final size:26
Alignment explanation
Indices: 26012340--26012392 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
26012330 AGTCAATAAT
26012340 TCAGGGAATCAGCACTTAGCAACCCC
1 TCAGGGAATCAGCACTTAGCAACCCC
26012366 TCAGGGAATCAGCACTTAGCAACCCC
1 TCAGGGAATCAGCACTTAGCAACCCC
26012392 T
1 T
26012393 TTTTATTCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.34, G:0.19, T:0.17
Consensus pattern (26 bp):
TCAGGGAATCAGCACTTAGCAACCCC
Found at i:26019814 original size:42 final size:42
Alignment explanation
Indices: 26019690--26019914 Score: 163
Period size: 42 Copynumber: 5.3 Consensus size: 42
26019680 CGGTGGATTT
* * *
26019690 AGCACTTAGCAACCACC-ATAAATTCAGTGATATGGGAAATC
1 AGCACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATC
* * * * * **
26019731 AACACATAGAAATC-CCTTTCACAATTAAG-GATTTGGTGGAATC
1 AGCACTTAGCAACCACCTTT-A-AATTCAGTGATACGG-GGAATC
*
26019774 AGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATC
1 AGCACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATC
* * *** *
26019816 AGCACTTAGCAATCC-CATTCACAATT-AAAAATACGGTGGATTC
1 AGCACTTAGCAA-CCACCTTTA-AATTCAGTGATACGG-GGAATC
* * * **
26019859 AACACGTAGCAACCACCTTTATATTCAACGATACGGGGAATC
1 AGCACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATC
26019901 AGCACTTAGCAACC
1 AGCACTTAGCAACC
26019915 CCTCGGGGAA
Statistics
Matches: 140, Mismatches: 33, Indels: 21
0.72 0.17 0.11
Matches are distributed among these distances:
40 2 0.01
41 11 0.08
42 63 0.45
43 59 0.42
44 5 0.04
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (42 bp):
AGCACTTAGCAACCACCTTTAAATTCAGTGATACGGGGAATC
Found at i:26019837 original size:85 final size:85
Alignment explanation
Indices: 26019680--26019912 Score: 297
Period size: 85 Copynumber: 2.8 Consensus size: 85
26019670 ATCCGTTACT
* * * * * * * *
26019680 CGGTGGATTTAGCACTTAGCAACCACC-ATAAATTCAGTGATATGGGAAATCAACACATAGAAAT
1 CGGTGGATTCAGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATCAGCACTTAGCAAT
* ** *
26019744 CCCTTTCACAATTAAGGATT
66 CCCATTCACAATTAAAAATA
* *
26019764 TGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATCAGCACTTAGCAAT
1 CGGTGGATTCAGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATCAGCACTTAGCAAT
26019829 CCCATTCACAATTAAAAATA
66 CCCATTCACAATTAAAAATA
* * **
26019849 CGGTGGATTCAACACGTAGCAACCACCTTTATATTCAACGATACGGGGAATCAGCACTTAGCAA
1 CGGTGGATTCAGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATCAGCACTTAGCAA
26019913 CCCCTCGGGG
Statistics
Matches: 128, Mismatches: 20, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
84 24 0.19
85 104 0.81
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (85 bp):
CGGTGGATTCAGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATCAGCACTTAGCAAT
CCCATTCACAATTAAAAATA
Found at i:26019921 original size:26 final size:26
Alignment explanation
Indices: 26019892--26019943 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
26019882 TTCAACGATA
26019892 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACTTAGCAACCCCT
26019918 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACTTAGCAACCCCT
26019944 TTTTATTGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.35, G:0.23, T:0.15
Consensus pattern (26 bp):
CGGGGAATCAGCACTTAGCAACCCCT
Found at i:26024785 original size:48 final size:47
Alignment explanation
Indices: 26024717--26024807 Score: 146
Period size: 48 Copynumber: 1.9 Consensus size: 47
26024707 ATAACACTGT
* *
26024717 TTGTGGACAAGCCACGACATAAATGTCGATTAACGACCACATAACTCA
1 TTGTGGACAAGCCACCACATAAATGCCGA-TAACGACCACATAACTCA
*
26024765 TTGTGGACAAGCCACCACATAATTGCCGATAACGACCACATAA
1 TTGTGGACAAGCCACCACATAAATGCCGATAACGACCACATAA
26024808 TCGTAGATAA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
47 14 0.35
48 26 0.65
ACGTcount: A:0.37, C:0.26, G:0.16, T:0.20
Consensus pattern (47 bp):
TTGTGGACAAGCCACCACATAAATGCCGATAACGACCACATAACTCA
Found at i:26024816 original size:21 final size:22
Alignment explanation
Indices: 26024778--26024829 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
26024768 TGGACAAGCC
* *
26024778 ACCACATAATTGCCGAT-AACG
1 ACCACATAATCGCAGATAAACG
* *
26024799 ACCACATAATCGTAGATAAACT
1 ACCACATAATCGCAGATAAACG
26024821 ACCACATAA
1 ACCACATAA
26024830 CTTCCACCTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
21 14 0.54
22 12 0.46
ACGTcount: A:0.44, C:0.27, G:0.10, T:0.19
Consensus pattern (22 bp):
ACCACATAATCGCAGATAAACG
Found at i:26025741 original size:30 final size:30
Alignment explanation
Indices: 26025701--26025760 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
26025691 ATTTTTGGAC
26025701 TAAAGGTCATACCAAACAATAATATACAAA
1 TAAAGGTCATACCAAACAATAATATACAAA
* *
26025731 TAAAGTTCATACCAGACAATAATATACAAA
1 TAAAGGTCATACCAAACAATAATATACAAA
26025761 GAATGAAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.55, C:0.17, G:0.07, T:0.22
Consensus pattern (30 bp):
TAAAGGTCATACCAAACAATAATATACAAA
Found at i:26034188 original size:40 final size:40
Alignment explanation
Indices: 26034136--26034327 Score: 253
Period size: 40 Copynumber: 4.8 Consensus size: 40
26034126 TATTACCACA
* * * * *
26034136 AGCACAATTGCCTTCGGGTCTTAACCCGG-GCATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATC-ACT
* * *
26034176 CGCACGAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATC-ACT
*
26034216 CGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
*
26034256 AGCACAAATGCCTTCGGGACTTAGCCCGGATCAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
*
26034296 AGCACAAATGCCTTCGGGACTTAGCCCGGATC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATC
26034328 TCATTCAAAT
Statistics
Matches: 140, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
40 136 0.97
41 4 0.03
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.22
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
Found at i:26037469 original size:35 final size:35
Alignment explanation
Indices: 26037420--26037489 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
26037410 GTAATGAATA
26037420 CTTAATTTTCACAATTAGTTTATTCAGCTGACGAT
1 CTTAATTTTCACAATTAGTTTATTCAGCTGACGAT
*
26037455 CTTATTTTTCACAATTAGTTTATTCAGCTGACGAT
1 CTTAATTTTCACAATTAGTTTATTCAGCTGACGAT
26037490 AATCAATGCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.27, C:0.17, G:0.11, T:0.44
Consensus pattern (35 bp):
CTTAATTTTCACAATTAGTTTATTCAGCTGACGAT
Found at i:26040828 original size:49 final size:50
Alignment explanation
Indices: 26040768--26040894 Score: 132
Period size: 49 Copynumber: 2.6 Consensus size: 50
26040758 GATAATAACA
* * * *
26040768 TGCCAAAGCCATGTCCCAGACATGGTCTCAAATGGGATGTT-TCTTGTA-C
1 TGCCAATGCCATGTCCCAGACATGGTCTCAAATAGGA-GTTCTCATATAGC
* * * * * *
26040817 TGCCAATGCCATATCTCAGATATGGTCTTAGATAGGAGTTCTCATATAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTCAAATAGGAGTTCTCATATAGC
*
26040867 TGCCCATGCCATGTCCCAGACATGGTCT
1 TGCCAATGCCATGTCCCAGACATGGTCT
26040895 TACGAGGGAC
Statistics
Matches: 62, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
48 3 0.05
49 35 0.56
50 24 0.39
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.29
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTCAAATAGGAGTTCTCATATAGC
Found at i:26040892 original size:50 final size:50
Alignment explanation
Indices: 26040768--26040962 Score: 171
Period size: 50 Copynumber: 3.9 Consensus size: 50
26040758 GATAATAACA
* * * * * *
26040768 TGCCAAAGCCATGTCCCAGACATGGTCTCAAATGGGATGTT-TCTTGTA-C
1 TGCCAATGCCATGTCCCAGACATGGTCTTAGATGGGA-GTTCTCATATAGG
* * * *
26040817 TGCCAATGCCATATCTCAGATATGGTCTTAGATAGGAGTTCTCATATAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTAGATGGGAGTTCTCATATAGG
* ** * *
26040867 TGCCCATGCCATGTCCCAGACATGGTCTTACGA-GGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTA-GATGGGAGTTCTCATATAGG
* * * **
26040917 TGCCAACGCCATGTCTCAGACATGGTCTTACATGGGACCTCTCATA
1 TGCCAATGCCATGTCCCAGACATGGTCTTAGATGGGAGTTCTCATA
26040963 ACCTTAATGA
Statistics
Matches: 118, Mismatches: 24, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
48 3 0.03
49 36 0.31
50 77 0.65
51 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTAGATGGGAGTTCTCATATAGG
Found at i:26043934 original size:15 final size:15
Alignment explanation
Indices: 26043906--26043939 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
26043896 TCTATAGTCT
26043906 TCTATAGTTTTCACAA
1 TCTATAGTTTTCAC-A
26043922 TCTATAG-TTTCACA
1 TCTATAGTTTTCACA
26043936 TCTA
1 TCTA
26043940 AAGATCACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.28
15 6 0.33
16 7 0.39
ACGTcount: A:0.29, C:0.21, G:0.06, T:0.44
Consensus pattern (15 bp):
TCTATAGTTTTCACA
Found at i:26052615 original size:12 final size:12
Alignment explanation
Indices: 26052590--26052630 Score: 50
Period size: 11 Copynumber: 3.5 Consensus size: 12
26052580 AGTAGTTTTC
*
26052590 AAAAAACTCGAAA
1 AAAAAATTC-AAA
26052603 AAAAAATTC-AA
1 AAAAAATTCAAA
26052614 AAAAAATT-AAA
1 AAAAAATTCAAA
26052625 AAAAAA
1 AAAAAA
26052631 CTAGTTTCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
11 18 0.69
13 8 0.31
ACGTcount: A:0.78, C:0.07, G:0.02, T:0.12
Consensus pattern (12 bp):
AAAAAATTCAAA
Found at i:26052630 original size:11 final size:11
Alignment explanation
Indices: 26052600--26052630 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
26052590 AAAAAACTCG
26052600 AAAAAAAAATT
1 AAAAAAAAATT
*
26052611 CAAAAAAAATT
1 AAAAAAAAATT
26052622 AAAAAAAAA
1 AAAAAAAAA
26052631 CTAGTTTCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.84, C:0.03, G:0.00, T:0.13
Consensus pattern (11 bp):
AAAAAAAAATT
Found at i:26052686 original size:13 final size:13
Alignment explanation
Indices: 26052668--26052705 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
26052658 GGATATCAAG
26052668 TTGTGAAAAAAAA
1 TTGTGAAAAAAAA
26052681 TTGTGAAAAAAAA
1 TTGTGAAAAAAAA
26052694 TTGT-AAAAAAAA
1 TTGTGAAAAAAAA
26052706 GAGAGCTAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 8 0.32
13 17 0.68
ACGTcount: A:0.63, C:0.00, G:0.13, T:0.24
Consensus pattern (13 bp):
TTGTGAAAAAAAA
Found at i:26056846 original size:12 final size:12
Alignment explanation
Indices: 26056829--26056871 Score: 52
Period size: 11 Copynumber: 3.6 Consensus size: 12
26056819 GTAGTTTTTC
*
26056829 AAAAAAACTCGAA
1 AAAAAAATTCG-A
26056842 AAAAAAATTC-A
1 AAAAAAATTCGA
*
26056853 AAAAAAATTTGA
1 AAAAAAATTCGA
26056865 AAAAAAA
1 AAAAAAA
26056872 AACTAGTTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
11 10 0.37
12 8 0.30
13 9 0.33
ACGTcount: A:0.74, C:0.07, G:0.05, T:0.14
Consensus pattern (12 bp):
AAAAAAATTCGA
Found at i:26059784 original size:39 final size:40
Alignment explanation
Indices: 26059741--26059963 Score: 254
Period size: 40 Copynumber: 5.6 Consensus size: 40
26059731 TCCTCGTTCA
* * * * *
26059741 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26059780 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
26059820 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
26059860 AATGCCTTCGGGACTTAACCCGGATTTAGTACCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
26059900 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
26059940 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
26059964 CAGCATTCAA
Statistics
Matches: 162, Mismatches: 18, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
39 37 0.23
40 117 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:26059972 original size:41 final size:41
Alignment explanation
Indices: 26059895--26059972 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
26059885 TTAGTACCTC
* * *
26059895 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
26059936 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
26059973 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:26070978 original size:40 final size:40
Alignment explanation
Indices: 26070925--26071116 Score: 253
Period size: 40 Copynumber: 4.8 Consensus size: 40
26070915 TATTACCACA
* * * * *
26070925 AGCACAATTGCCTTCGGGTCTTAACCCGG-GCATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATC-ACT
* * *
26070965 CGCACGAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATC-ACT
*
26071005 CGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
*
26071045 AGCACAAATGCCTTCGGGACTTAGCCCGGATCAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
*
26071085 AGCACAAATGCCTTCGGGACTTAGCCCGGATC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATC
26071117 TCATTCAAAT
Statistics
Matches: 140, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
40 136 0.97
41 4 0.03
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.22
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
Found at i:26074257 original size:35 final size:35
Alignment explanation
Indices: 26074208--26074277 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
26074198 GTAATGAATA
26074208 CTTAATTTTCACAATTAGTTTATTCAGCTGACGAT
1 CTTAATTTTCACAATTAGTTTATTCAGCTGACGAT
*
26074243 CTTATTTTTCACAATTAGTTTATTCAGCTGACGAT
1 CTTAATTTTCACAATTAGTTTATTCAGCTGACGAT
26074278 AATCAATGCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.27, C:0.17, G:0.11, T:0.44
Consensus pattern (35 bp):
CTTAATTTTCACAATTAGTTTATTCAGCTGACGAT
Found at i:26077616 original size:49 final size:50
Alignment explanation
Indices: 26077556--26077682 Score: 132
Period size: 49 Copynumber: 2.6 Consensus size: 50
26077546 GATAATAACA
* * * *
26077556 TGCCAAAGCCATGTCCCAGACATGGTCTCAAATGGGATGTT-TCTTGTA-C
1 TGCCAATGCCATGTCCCAGACATGGTCTCAAATAGGA-GTTCTCATATAGC
* * * * * *
26077605 TGCCAATGCCATATCTCAGATATGGTCTTAGATAGGAGTTCTCATATAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTCAAATAGGAGTTCTCATATAGC
*
26077655 TGCCCATGCCATGTCCCAGACATGGTCT
1 TGCCAATGCCATGTCCCAGACATGGTCT
26077683 TACGAGGGAC
Statistics
Matches: 62, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
48 3 0.05
49 35 0.56
50 24 0.39
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.29
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTCAAATAGGAGTTCTCATATAGC
Found at i:26077680 original size:50 final size:50
Alignment explanation
Indices: 26077556--26077750 Score: 171
Period size: 50 Copynumber: 3.9 Consensus size: 50
26077546 GATAATAACA
* * * * * *
26077556 TGCCAAAGCCATGTCCCAGACATGGTCTCAAATGGGATGTT-TCTTGTA-C
1 TGCCAATGCCATGTCCCAGACATGGTCTTAGATGGGA-GTTCTCATATAGG
* * * *
26077605 TGCCAATGCCATATCTCAGATATGGTCTTAGATAGGAGTTCTCATATAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTAGATGGGAGTTCTCATATAGG
* ** * *
26077655 TGCCCATGCCATGTCCCAGACATGGTCTTACGA-GGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTA-GATGGGAGTTCTCATATAGG
* * * **
26077705 TGCCAACGCCATGTCTCAGACATGGTCTTACATGGGACCTCTCATA
1 TGCCAATGCCATGTCCCAGACATGGTCTTAGATGGGAGTTCTCATA
26077751 ACCTTAATGA
Statistics
Matches: 118, Mismatches: 24, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
48 3 0.03
49 36 0.31
50 77 0.65
51 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTAGATGGGAGTTCTCATATAGG
Found at i:26080738 original size:15 final size:15
Alignment explanation
Indices: 26080710--26080743 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
26080700 TCTATAGTCT
26080710 TCTATAGTTTTCACAA
1 TCTATAGTTTTCAC-A
26080726 TCTATAG-TTTCACA
1 TCTATAGTTTTCACA
26080740 TCTA
1 TCTA
26080744 AAGATCACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.28
15 6 0.33
16 7 0.39
ACGTcount: A:0.29, C:0.21, G:0.06, T:0.44
Consensus pattern (15 bp):
TCTATAGTTTTCACA
Found at i:26085085 original size:18 final size:19
Alignment explanation
Indices: 26085062--26085098 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
26085052 GAAGAAAGAC
26085062 AGAAAAAGA-AATCAAAAA
1 AGAAAAAGAGAATCAAAAA
*
26085080 AGAAAAAGAGAATGAAAAA
1 AGAAAAAGAGAATCAAAAA
26085099 GAGCAAATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.76, C:0.03, G:0.16, T:0.05
Consensus pattern (19 bp):
AGAAAAAGAGAATCAAAAA
Found at i:26093190 original size:50 final size:50
Alignment explanation
Indices: 26093083--26093235 Score: 171
Period size: 50 Copynumber: 2.9 Consensus size: 50
26093073 GGGATGAGAC
* * *
26093083 CCCATGTAAGACCATGTCTAGGACATGGCATTGGCATTATTGAGGTTATGAGTGGT
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGC---ACTGA-G--ATGAGAGGT
* *
26093139 CCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGT
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAGGT
* * * *
26093189 CCCTTGTAAGACTATGTCTGGGACATGGCATGGGCACTGATATGAGA
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGA
26093236 ACTCTCTGGG
Statistics
Matches: 86, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
50 49 0.57
52 1 0.01
53 3 0.03
56 33 0.38
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (50 bp):
CCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAGGT
Found at i:26093535 original size:20 final size:20
Alignment explanation
Indices: 26093510--26093548 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
26093500 TGAGTTATTT
26093510 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
26093530 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
26093549 GCAGAAGCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:26095748 original size:25 final size:25
Alignment explanation
Indices: 26095688--26095736 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
26095678 CCATATCTCG
*
26095688 TGAGAGCATACTAATTTATAGCTCA
1 TGAGAGCATACTAATCTATAGCTCA
*
26095713 TGAGAGCATACTGATCTATAGCTC
1 TGAGAGCATACTAATCTATAGCTC
26095737 GAGTGAGCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (25 bp):
TGAGAGCATACTAATCTATAGCTCA
Found at i:26117054 original size:7 final size:7
Alignment explanation
Indices: 26117044--26117074 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
26117034 ATTTCCCCTC
26117044 CCCATTT
1 CCCATTT
26117051 CCCATTT
1 CCCATTT
26117058 CCCATTT
1 CCCATTT
26117065 CCCATTT
1 CCCATTT
26117072 CCC
1 CCC
26117075 TAAGCCCGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.13, C:0.48, G:0.00, T:0.39
Consensus pattern (7 bp):
CCCATTT
Found at i:26117056 original size:20 final size:21
Alignment explanation
Indices: 26117027--26117074 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
26117017 TTAAAAATAA
*
26117027 ATTTCTCATTTCCC-CTCCCC
1 ATTTCCCATTTCCCACTCCCC
* *
26117047 ATTTCCCATTTCCCATTTCCC
1 ATTTCCCATTTCCCACTCCCC
26117068 ATTTCCC
1 ATTTCCC
26117075 TAAGCCCGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 13 0.54
21 11 0.46
ACGTcount: A:0.12, C:0.46, G:0.00, T:0.42
Consensus pattern (21 bp):
ATTTCCCATTTCCCACTCCCC
Found at i:26117142 original size:21 final size:21
Alignment explanation
Indices: 26117112--26117165 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 21
26117102 CCCTCATCCT
*
26117112 TTTTTTATTTT-TATTTCAAAA
1 TTTTTAATTTTATATTTC-AAA
26117133 TTTTTAATTTTTATATTTCAAA
1 TTTTTAA-TTTTATATTTCAAA
26117155 TTTTATAATTT
1 TTTT-TAATTT
26117166 AATTTTAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 6 0.21
22 14 0.48
23 9 0.31
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTTAATTTTATATTTCAAA
Found at i:26117149 original size:23 final size:22
Alignment explanation
Indices: 26117119--26117165 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
26117109 CCTTTTTTTA
26117119 TTTTTATTTCAAAATTTT-TAAT
1 TTTTTATTTC-AAATTTTATAAT
26117141 TTTTATATTTCAAATTTTATAAT
1 TTTT-TATTTCAAATTTTATAAT
26117164 TT
1 TT
26117166 AATTTTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 11 0.48
23 12 0.52
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (22 bp):
TTTTTATTTCAAATTTTATAAT
Found at i:26117166 original size:21 final size:21
Alignment explanation
Indices: 26117112--26117170 Score: 59
Period size: 23 Copynumber: 2.8 Consensus size: 21
26117102 CCCTCATCCT
* *
26117112 TTTTTTATTTTTATTTCAAAA
1 TTTTTAATTTATATTTCAAAA
26117133 TTTTTAATTTTTATATTTC-AAA
1 TTTTTAA--TTTATATTTCAAAA
26117155 TTTTATAATTTA-ATTT
1 TTTT-TAATTTATATTT
26117171 TAATTATTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
20 4 0.12
21 10 0.30
22 7 0.21
23 12 0.36
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (21 bp):
TTTTTAATTTATATTTCAAAA
Found at i:26118356 original size:50 final size:50
Alignment explanation
Indices: 26118284--26118460 Score: 158
Period size: 50 Copynumber: 3.5 Consensus size: 50
26118274 TTTGGAAAGT
* * *
26118284 AAGATTCGCCATCGTGGTTTTAATCTTTTTAACTACAATGTCGGGGAAGC
1 AAGATTCACCATTGTGGCTTTAATCTTTTTAACTACAATGTCGGGGAAGC
* * * * * * * *
26118334 AAGATTCACCATTGTGGCTTTAATCTGCTCT-ACTGCACTGGCTGAGAGAGT
1 AAGATTCACCATTGTGGCTTTAATCT-TTTTAACTACAATGTCGGGGA-AGC
* ** * * *
26118385 GAGATTCGTCATTGTGACTTTAATCCTTTTAACTACAATGTCGGGAAAGC
1 AAGATTCACCATTGTGGCTTTAATCTTTTTAACTACAATGTCGGGGAAGC
* *
26118435 AAGATCCACCGTTGTGGCTTTAATCT
1 AAGATTCACCATTGTGGCTTTAATCT
26118461 GCTTCACTGG
Statistics
Matches: 92, Mismatches: 32, Indels: 6
0.71 0.25 0.05
Matches are distributed among these distances:
50 57 0.62
51 35 0.38
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.33
Consensus pattern (50 bp):
AAGATTCACCATTGTGGCTTTAATCTTTTTAACTACAATGTCGGGGAAGC
Found at i:26118783 original size:44 final size:44
Alignment explanation
Indices: 26118730--26119032 Score: 250
Period size: 44 Copynumber: 6.7 Consensus size: 44
26118720 CATTTATTTT
* * **
26118730 AATCCGCTCCACTGTAATCTTAGGGAGATGCGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * *
26118774 AATCTGCTCCGCTGTAATATCGGGGAGATAAGATTTCTGGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * * *
26118818 AATCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCT-TTA-TTTT
1 AATC---TGC--TCCACTGTA--AT--C-TCAGGGAGATAAGAT--TACTAGCTTC
* *
26118872 AATCTGCTCCACTGCAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * *
26118916 AATATGCTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* *
26118960 AATCTGCTCCACTGTAATCTTAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* **
26119004 AATCTACTCTGCTGTAATCTCAGGGAGAT
1 AATCTGCTCCACTGTAATCTCAGGGAGAT
26119033 TGTGACAGCC
Statistics
Matches: 202, Mismatches: 43, Indels: 28
0.74 0.16 0.10
Matches are distributed among these distances:
42 1 0.00
43 2 0.01
44 155 0.77
45 1 0.00
47 5 0.02
49 12 0.06
51 5 0.02
54 19 0.09
55 1 0.00
56 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (44 bp):
AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
Found at i:26118800 original size:142 final size:141
Alignment explanation
Indices: 26118537--26118965 Score: 687
Period size: 142 Copynumber: 3.0 Consensus size: 141
26118527 GAGATAAGAC
*
26118537 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATCTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
* * * * *
26118602 TAATCTCAAGGAGATAAGATTACTAGCTTCAGTCTGTTCTGCTGTAATCTCAGGGAGATAAGATT
66 TAATCTCAGGGAGAT-GGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
26118667 TCTGGCTTCAAT
130 TCTGGCTTCAAT
* * *
26118679 CTGATGTGATCTACCCTACTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
* * *
26118744 TAATCTTAGGGAGATGCGATTACTAGCTTCAATCTGCTCCGCTGTAATATCGGGGAGATAAGATT
66 TAATCTCAGGGAGATG-GATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
26118809 TCTGGCTTCAAT
130 TCTGGCTTCAAT
* *
26118821 CTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
* *
26118886 CAATCTCAGGGAGATAGGATTACTAGCTTCAATATGCTCCGCTGTAATCTCAGGGAGATAAGATT
66 TAATCTCAGGGAGAT-GGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
26118951 TCTGGCTTCAAT
130 TCTGGCTTCAAT
26118963 CTG
1 CTG
26118966 CTCCACTGTA
Statistics
Matches: 263, Mismatches: 22, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
142 262 1.00
143 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (141 bp):
CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
TAATCTCAGGGAGATGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTT
CTGGCTTCAAT
Found at i:26119001 original size:88 final size:88
Alignment explanation
Indices: 26118872--26119032 Score: 277
Period size: 88 Copynumber: 1.8 Consensus size: 88
26118862 CCTTTATTTT
*
26118872 AATCTGCTCCACTGCAATCTCAGGGAGATAGGATTACTAGCTTCAATATGCTCCGCTGTAATCTC
1 AATCTGCTCCACTGCAATCTCAGGGAGATAGGATTACTAGCTTCAATATACTCCGCTGTAATCTC
26118937 AGGGAGATAAGATTTCTGGCTTC
66 AGGGAGATAAGATTTCTGGCTTC
* * * *
26118960 AATCTGCTCCACTGTAATCTTAGGGAGATAGGATTACTAGCTTCAATCTACTCTGCTGTAATCTC
1 AATCTGCTCCACTGCAATCTCAGGGAGATAGGATTACTAGCTTCAATATACTCCGCTGTAATCTC
26119025 AGGGAGAT
66 AGGGAGAT
26119033 TGTGACAGCC
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 68 1.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (88 bp):
AATCTGCTCCACTGCAATCTCAGGGAGATAGGATTACTAGCTTCAATATACTCCGCTGTAATCTC
AGGGAGATAAGATTTCTGGCTTC
Found at i:26119418 original size:56 final size:56
Alignment explanation
Indices: 26119329--26119504 Score: 334
Period size: 56 Copynumber: 3.1 Consensus size: 56
26119319 ACAAGGGATG
* *
26119329 ATGGGCAAAACATGTCATGAAACATGTTATGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
26119385 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
26119441 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
26119497 ATGGGCAA
1 ATGGGCAA
26119505 TAAACCAATA
Statistics
Matches: 118, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 118 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:26120716 original size:40 final size:39
Alignment explanation
Indices: 26120632--26120815 Score: 210
Period size: 39 Copynumber: 4.6 Consensus size: 39
26120622 TCGAATGATG
* * * *
26120632 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
26120672 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
26120712 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
26120751 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26120791 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
26120816 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 67 0.54
40 48 0.39
41 8 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26120833 original size:79 final size:78
Alignment explanation
Indices: 26120669--26120848 Score: 204
Period size: 79 Copynumber: 2.3 Consensus size: 78
26120659 CTAAGTGACC
** *
26120669 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATATCCGGGTTAAG-TCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCAT
**
26120734 TGGTGCGAGTTACT
65 TGGAACGAGTTACT
* * *
26120748 AAATCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCA
1 ATATCCGGGTTAAGTCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCA
*
26120812 TTTGAACGAG-TAGCT
64 TTGGAACGAGTTA-CT
*
26120827 ATATCC-GGTTAAATTCCGAAGG
1 ATATCCGGGTT-AAGTCCGAAGG
26120849 TACGTGATTT
Statistics
Matches: 86, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
77 2 0.02
78 39 0.45
79 45 0.52
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
ATATCCGGGTTAAGTCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATT
GGAACGAGTTACT
Found at i:26127410 original size:56 final size:56
Alignment explanation
Indices: 26127272--26127446 Score: 334
Period size: 56 Copynumber: 3.1 Consensus size: 56
26127262 ACAAGGGATG
*
26127272 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAG-AGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
26127327 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
26127383 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
26127439 ATGGGCAA
1 ATGGGCAA
26127447 TAAACCAATA
Statistics
Matches: 118, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
55 51 0.43
56 67 0.57
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:26128716 original size:79 final size:80
Alignment explanation
Indices: 26128575--26128798 Score: 278
Period size: 79 Copynumber: 2.8 Consensus size: 80
26128565 TCTAATGATG
* * * * *
26128575 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
*
26128638 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
* * *
26128655 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAGGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
*
26128719 GTGCGAGTTACTAAA
66 GTGCGAGATACTAAA
* *
26128734 TCC-GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
26128797 TG
65 TG
26128799 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
78 7 0.06
79 99 0.79
80 19 0.15
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:26128805 original size:40 final size:40
Alignment explanation
Indices: 26128575--26128798 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
26128565 TCTAATGATG
* * * *
26128575 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
26128615 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26128655 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
26128694 TCCGGGTTAAGTCCCGAGGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26128734 TCC-GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26128774 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26128799 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
39 69 0.43
40 84 0.52
41 8 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26128805 original size:79 final size:78
Alignment explanation
Indices: 26128582--26128831 Score: 265
Period size: 79 Copynumber: 3.2 Consensus size: 78
26128572 ATGTCCGGGC
* * * * *
26128582 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCATTTGTGCG
* *
26128645 AGATACTAATTCCGGGC
64 AG-TACTAAATCC-GGT
* * *
26128662 TAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAGGGCATTTGTGCGA
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATTTGTGCGA
26128725 GTTACTAAATCCGGT
65 G-TACTAAATCCGGT
* **
26128740 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
*
26128805 TAGCTATATCCGGT
66 TA-CTAAATCCGGT
* *
26128819 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
26128832 TACGTGATTT
Statistics
Matches: 144, Mismatches: 20, Indels: 13
0.81 0.11 0.07
Matches are distributed among these distances:
78 10 0.07
79 122 0.85
80 12 0.08
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
TACTAAATCCGGT
Found at i:26165377 original size:20 final size:20
Alignment explanation
Indices: 26165340--26165378 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
26165330 TAGTATTTTG
**
26165340 TGTGGTGGTTAATTTGATGT
1 TGTGGTGGTTAAGATGATGT
*
26165360 TGTGTTGGTTAAGATGATG
1 TGTGGTGGTTAAGATGATG
26165379 GTAAGGAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.00, G:0.36, T:0.46
Consensus pattern (20 bp):
TGTGGTGGTTAAGATGATGT
Found at i:26178924 original size:51 final size:51
Alignment explanation
Indices: 26178838--26179038 Score: 210
Period size: 51 Copynumber: 4.0 Consensus size: 51
26178828 ATTAATGATA
* * * *
26178838 CCGGTTCACATAGTAGCCTGAACATAGGACTACACATGTGACCATCACTAT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATCACTAT
* * * * * *
26178889 CCGATACATGTAGTAGTCTGCACATAGTACTACACACGTGATCA-AAGCTAT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATCA-CTAT
* * * * *
26178940 CCGGTACGCATAGTATCGTGCACATAGTACTACACATGCGACCTATCA-T-T
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACC-ATCACTAT
* *
26178990 CTGGTACACGTAGTAGCCTGCACATAGTACAACACATGTGACCATCACT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATCACT
26179039 TTCACTTTCA
Statistics
Matches: 118, Mismatches: 28, Indels: 9
0.76 0.18 0.06
Matches are distributed among these distances:
49 4 0.03
50 39 0.33
51 73 0.62
52 1 0.01
53 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (51 bp):
CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATCACTAT
Found at i:26179054 original size:101 final size:102
Alignment explanation
Indices: 26178838--26179033 Score: 243
Period size: 101 Copynumber: 1.9 Consensus size: 102
26178828 ATTAATGATA
* *
26178838 CCGGTTCACATAGTAGCCTGAACATAGGACTACACATGTGACCATCACTATCCGATACATGTAGT
1 CCGGTTCACATAGTAGCCTGAACATAGGACTACACATGCGACCATCACTATCCGATACACGTAGT
* * *
26178903 AGTCTGCACATAGTACTACACACGTGATCAAAGCTAT
66 AGCCTGCACATAGTACAACACACGTGACCAAAGCTAT
* * * * * * * *
26178940 CCGGTACGCATAGTATCGTGCACATAGTACTACACATGCGACCTATCA-T-TCTGGTACACGTAG
1 CCGGTTCACATAGTAGCCTGAACATAGGACTACACATGCGACC-ATCACTATCCGATACACGTAG
*
26179003 TAGCCTGCACATAGTACAACACATGTGACCA
65 TAGCCTGCACATAGTACAACACACGTGACCA
26179034 TCACTTTCAC
Statistics
Matches: 79, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
101 38 0.48
102 37 0.47
103 4 0.05
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (102 bp):
CCGGTTCACATAGTAGCCTGAACATAGGACTACACATGCGACCATCACTATCCGATACACGTAGT
AGCCTGCACATAGTACAACACACGTGACCAAAGCTAT
Found at i:26182263 original size:30 final size:31
Alignment explanation
Indices: 26182195--26182253 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
26182185 CACCCTTAAA
** *
26182195 ATATTTACACTATTAGTCCTTCAAATTTTTC
1 ATATTTACACTATTAACCCCTCAAATTTTTC
26182226 ATATTTACACT-TTAACCCCTCAAATTTT
1 ATATTTACACTATTAACCCCTCAAATTTT
26182254 GAGTATTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.31, C:0.22, G:0.02, T:0.46
Consensus pattern (31 bp):
ATATTTACACTATTAACCCCTCAAATTTTTC
Found at i:26185922 original size:12 final size:12
Alignment explanation
Indices: 26185897--26185935 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
26185887 ACTCGTTTCT
* *
26185897 TTACTTACTCAC
1 TTACTTGCTTAC
*
26185909 TTACTTGTTTAC
1 TTACTTGCTTAC
26185921 TTACTTGCTTAC
1 TTACTTGCTTAC
26185933 TTA
1 TTA
26185936 AATAAATCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.21, C:0.23, G:0.05, T:0.51
Consensus pattern (12 bp):
TTACTTGCTTAC
Found at i:26186372 original size:50 final size:50
Alignment explanation
Indices: 26186204--26186373 Score: 245
Period size: 50 Copynumber: 3.4 Consensus size: 50
26186194 ATATCTGGGT
* * *
26186204 ATGGTCTTACATGGGAGT-TCTCATATCGGTGCCCATGCCATGTCCCAGAC
1 ATGGTCTTACATGGGA-TCTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
*
26186254 ATGGTCTTACGA-GGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
1 ATGGTCTTAC-ATGGGATCTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
* *
26186304 ATGGTCTTACATGGGATCTCTCATCTTGGTGCCAACGCCATGTCCCAGTC
1 ATGGTCTTACATGGGATCTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
*
26186354 ATGGTCTTACATGAGATCTC
1 ATGGTCTTACATGGGATCTC
26186374 ATTCCCTTAA
Statistics
Matches: 109, Mismatches: 8, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
49 1 0.01
50 107 0.98
51 1 0.01
ACGTcount: A:0.20, C:0.29, G:0.23, T:0.28
Consensus pattern (50 bp):
ATGGTCTTACATGGGATCTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
Found at i:26189640 original size:29 final size:29
Alignment explanation
Indices: 26189598--26189666 Score: 86
Period size: 29 Copynumber: 2.4 Consensus size: 29
26189588 AATAAATGCC
* * *
26189598 TATTTTGGTAATTAATT-TTTTTCTTATCT
1 TATTTCGGTAATTAATTAATTTT-TTATAT
26189627 TATTTCGGTAATTAATTAATTTTTTATAT
1 TATTTCGGTAATTAATTAATTTTTTATAT
*
26189656 TATTTGGGTAA
1 TATTTCGGTAA
26189667 AAAAACCATT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 31 0.89
30 4 0.11
ACGTcount: A:0.26, C:0.04, G:0.10, T:0.59
Consensus pattern (29 bp):
TATTTCGGTAATTAATTAATTTTTTATAT
Found at i:26189912 original size:12 final size:12
Alignment explanation
Indices: 26189897--26189928 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
26189887 AAAATTATTA
26189897 AAAAATAAAATT
1 AAAAATAAAATT
*
26189909 AAAATTAAAATT
1 AAAAATAAAATT
26189921 AAAAATAA
1 AAAAATAA
26189929 GATTTATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (12 bp):
AAAAATAAAATT
Found at i:26189926 original size:13 final size:13
Alignment explanation
Indices: 26189893--26189926 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
26189883 TGTAAAAATT
*
26189893 ATTAAAAAATAAA
1 ATTAAAAATTAAA
26189906 ATT-AAAATTAAA
1 ATTAAAAATTAAA
26189918 ATTAAAAAT
1 ATTAAAAAT
26189927 AAGATTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (13 bp):
ATTAAAAATTAAA
Found at i:26190027 original size:10 final size:10
Alignment explanation
Indices: 26190012--26190047 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
26190002 TTATATACTT
26190012 TTTTTTTCAA
1 TTTTTTTCAA
26190022 TTTTTTAT-AA
1 TTTTTT-TCAA
26190032 TTTTTTTCAA
1 TTTTTTTCAA
26190042 TTTTTT
1 TTTTTT
26190048 GATATTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 1 0.04
10 22 0.92
11 1 0.04
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (10 bp):
TTTTTTTCAA
Found at i:26190037 original size:20 final size:20
Alignment explanation
Indices: 26190012--26190073 Score: 74
Period size: 20 Copynumber: 3.1 Consensus size: 20
26190002 TTATATACTT
26190012 TTTTTTTCAATTTTTTATAA
1 TTTTTTTCAATTTTTTATAA
26190032 TTTTTTTCAATTTTTTGAT-A
1 TTTTTTTCAATTTTTT-ATAA
* * *
26190052 TTATTTT-AACTTTTTAAAA
1 TTTTTTTCAATTTTTTATAA
26190071 TTT
1 TTT
26190074 ATAAATATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
18 1 0.03
19 10 0.28
20 23 0.64
21 2 0.06
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.68
Consensus pattern (20 bp):
TTTTTTTCAATTTTTTATAA
Found at i:26195360 original size:16 final size:17
Alignment explanation
Indices: 26195318--26195364 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 17
26195308 TTCACCTTTT
26195318 TTCG-AATTTTTTTTAC
1 TTCGTAATTTTTTTTAC
*
26195334 TTCGTACTTTTTTTTA-
1 TTCGTAATTTTTTTTAC
*
26195350 TTCTTAATTTTTTTT
1 TTCGTAATTTTTTTT
26195365 CTTTTTTCGT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
16 17 0.63
17 10 0.37
ACGTcount: A:0.15, C:0.11, G:0.04, T:0.70
Consensus pattern (17 bp):
TTCGTAATTTTTTTTAC
Found at i:26195364 original size:20 final size:20
Alignment explanation
Indices: 26195341--26195394 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
26195331 TACTTCGTAC
* *
26195341 TTTTT-TTTATTCTTAATTT
1 TTTTTCTTTTTTCGTAATTT
26195360 TTTTTCTTTTTTCGTAATTT
1 TTTTTCTTTTTTCGTAATTT
26195380 CCTCTTTTCTTTTTT
1 --T-TTTTCTTTTTT
26195395 TTCAATTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 5 0.17
20 12 0.41
22 1 0.03
23 11 0.38
ACGTcount: A:0.09, C:0.13, G:0.02, T:0.76
Consensus pattern (20 bp):
TTTTTCTTTTTTCGTAATTT
Found at i:26200888 original size:20 final size:20
Alignment explanation
Indices: 26200863--26200970 Score: 103
Period size: 20 Copynumber: 5.4 Consensus size: 20
26200853 GCTTGTACGA
*
26200863 GATTGCACTTTGGTGCCCCT
1 GATTGCACTTTGGTGCCTCT
*
26200883 GATTGCACATTT-GTGTCTCT
1 GATTGCAC-TTTGGTGCCTCT
* *
26200903 GTTTGTACTTTGGTGCCTCT
1 GATTGCACTTTGGTGCCTCT
*
26200923 AATTGCACATTT-GTGCCTCT
1 GATTGCAC-TTTGGTGCCTCT
* * * *
26200943 GTTTACACTTCGGTGCCTTT
1 GATTGCACTTTGGTGCCTCT
26200963 GATTGCAC
1 GATTGCAC
26200971 AATTGTGCCT
Statistics
Matches: 69, Mismatches: 15, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
19 5 0.07
20 58 0.84
21 6 0.09
ACGTcount: A:0.13, C:0.24, G:0.21, T:0.42
Consensus pattern (20 bp):
GATTGCACTTTGGTGCCTCT
Found at i:26201002 original size:40 final size:40
Alignment explanation
Indices: 26200865--26201000 Score: 166
Period size: 40 Copynumber: 3.4 Consensus size: 40
26200855 TTGTACGAGA
* * *
26200865 TTGCACTTTGGTGCCCCTGATTGCACATTTGTGTCTCTGT
1 TTGCACTTCGGTGCCTCTGATTGCACATTTGTGCCTCTGT
* * *
26200905 TTGTACTTTGGTGCCTCTAATTGCACATTTGTGCCTCTGT
1 TTGCACTTCGGTGCCTCTGATTGCACATTTGTGCCTCTGT
* * * *
26200945 TTACACTTCGGTGCCTTTGATTGCACAATTGTGCCT-TTT
1 TTGCACTTCGGTGCCTCTGATTGCACATTTGTGCCTCTGT
26200984 TCTGCACTTCGGTGCCT
1 T-TGCACTTCGGTGCCT
26201001 TTATTACGCA
Statistics
Matches: 83, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
39 3 0.04
40 80 0.96
ACGTcount: A:0.12, C:0.25, G:0.21, T:0.43
Consensus pattern (40 bp):
TTGCACTTCGGTGCCTCTGATTGCACATTTGTGCCTCTGT
Found at i:26212588 original size:87 final size:87
Alignment explanation
Indices: 26212424--26212603 Score: 256
Period size: 87 Copynumber: 2.1 Consensus size: 87
26212414 CACCCTTTAC
* * * *
26212424 TAAAGTCTATTTAACTCTCTGTAAAATATTCATATAAGGTTATTATTTATTTCTACAAAAATTAT
1 TAAA-TCTATTTAAATCTCTGTAAAATATTCATATAAGGTTATTATTTATTTATACAAAAAATAG
* *
26212489 ACTTAATTAGGAATTTAAGCATA
65 ACATAATGAGGAATTTAAGCATA
*
26212512 TAAATCTATTTAAATCTCTGTACAAA-ATTCATATAAGGTTATTGTTTATTTATA-AAGAAAATA
1 TAAATCTATTTAAATCTCTGTA-AAATATTCATATAAGGTTATTATTTATTTATACAA-AAAATA
26212575 GACATAATGAGGAATTTAAGCATA
64 GACATAATGAGGAATTTAAGCATA
26212599 TAAAT
1 TAAAT
26212604 TTCAACCCAC
Statistics
Matches: 83, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
86 2 0.02
87 74 0.89
88 7 0.08
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.39
Consensus pattern (87 bp):
TAAATCTATTTAAATCTCTGTAAAATATTCATATAAGGTTATTATTTATTTATACAAAAAATAGA
CATAATGAGGAATTTAAGCATA
Found at i:26215189 original size:36 final size:37
Alignment explanation
Indices: 26215117--26215194 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
26215107 TTATTACGAA
* *
26215117 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACATAATCCCCACACGAAGTCATCGG
*
26215154 GTCTTACCCGGACA-AATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCCCCACACGAAGTCATCGG
26215190 GTCTT
1 GTCTT
26215195 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 24 0.63
37 14 0.37
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCCCCACACGAAGTCATCGG
Found at i:26215398 original size:46 final size:46
Alignment explanation
Indices: 26215314--26215738 Score: 672
Period size: 46 Copynumber: 9.0 Consensus size: 46
26215304 CTTCGGGACT
* * * * * *
26215314 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CC
*
26215361 TGTCACATATATACAC-TTCACATTCATCACATCGGCCATTAGGCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
26215406 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
26215452 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
26215500 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
26215548 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 -TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
26215595 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 -TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
26215644 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
26215690 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 -TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
26215739 ATACTATCAT
Statistics
Matches: 361, Mismatches: 8, Indels: 16
0.94 0.02 0.04
Matches are distributed among these distances:
45 17 0.05
46 97 0.27
47 67 0.19
48 94 0.26
49 86 0.24
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (46 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
Found at i:26215647 original size:144 final size:142
Alignment explanation
Indices: 26215312--26215738 Score: 720
Period size: 144 Copynumber: 3.0 Consensus size: 142
26215302 CCCTTCGGGA
* * * * * *
26215312 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG-CCTATCACATATATAC
26215375 AC-TTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATACACTTTCACATTCATCACA
65 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
26215438 TCGGCCATTAGGC
130 TCGGCCATTAGGC
26215451 C-TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCAC--ATATATA
26215515 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
64 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
26215580 ATCGGCCATTAGGC
129 ATCGGCCATTAGGC
26215594 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACA
26215659 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCAC
26215724 ATCGGCCATTAGGC
129 ATCGGCCATTAGGC
26215738 C
1 C
26215739 ATACTATCAT
Statistics
Matches: 273, Mismatches: 6, Indels: 13
0.93 0.02 0.04
Matches are distributed among these distances:
138 8 0.03
139 9 0.03
140 30 0.11
141 10 0.04
142 76 0.28
143 46 0.17
144 94 0.34
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (142 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGC
Found at i:26215648 original size:95 final size:95
Alignment explanation
Indices: 26215312--26215738 Score: 715
Period size: 95 Copynumber: 4.5 Consensus size: 95
26215302 CCCTTCGGGA
* * * * * *
26215312 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG-CCTATCACATATATAC
26215375 AC-TTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
26215405 C-TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCAC--ATATATA
26215467 CACTTTCACATTCATCACATCGGCCATTAGGC
64 CACTTTCACATTCATCACATCGGCCATTAGGC
26215499 C-TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATAC
26215563 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
26215594 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACA
26215659 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
26215689 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
26215739 ATACTATCAT
Statistics
Matches: 319, Mismatches: 6, Indels: 16
0.94 0.02 0.05
Matches are distributed among these distances:
91 8 0.03
92 36 0.11
93 11 0.03
94 35 0.11
95 135 0.42
96 88 0.28
97 6 0.02
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (95 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26219141 original size:40 final size:40
Alignment explanation
Indices: 26219096--26219291 Score: 259
Period size: 40 Copynumber: 4.9 Consensus size: 40
26219086 CGAATACACG
* * * *
26219096 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * ** * *
26219136 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
26219176 TCACTAGCACGAATGCTCTTCAGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
26219216 TCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
26219255 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
26219292 TTAGTAACTC
Statistics
Matches: 138, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
39 38 0.28
40 100 0.72
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:26219316 original size:40 final size:40
Alignment explanation
Indices: 26219109--26219334 Score: 144
Period size: 40 Copynumber: 5.7 Consensus size: 40
26219099 CCAGCATGAT
* * * *
26219109 TGCTCTTCGGGACCTAGCCCGGATATA--ACACCAGCACGAA
1 TGCTCTTC-GGACTTAGCCCGGATTTAGTA-ACTAGCACCAA
** * * * *
26219149 TGCTCTTCGGGGTTTAGCACGGATATA-TCACTAGCACGAA
1 TGCTCTTC-GGACTTAGCCCGGATTTAGTAACTAGCACCAA
* ** * **
26219189 TGCTCTTCAGAACTTAGCCCGGATACA-TCACTAGCATGAA
1 TGCTCTTC-GGACTTAGCCCGGATTTAGTAACTAGCACCAA
** * **
26219229 TGCTCTTCGGACTTAGCCCGGATACA-TCACTAGCATGAA
1 TGCTCTTCGGACTTAGCCCGGATTTAGTAACTAGCACCAA
*
26219268 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTC-GGACTTAGCCCGGATTTAGTAACTAGCACCAA
*
26219309 TGC-CTTC-G-CTTAGCCCGGAATTAGTA
1 TGCTCTTCGGACTTAGCCCGGATTTAGTA
26219335 TCTTGCGGAT
Statistics
Matches: 162, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
37 17 0.10
38 1 0.01
39 38 0.23
40 94 0.58
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGACTTAGCCCGGATTTAGTAACTAGCACCAA
Found at i:26219316 original size:79 final size:77
Alignment explanation
Indices: 26219096--26219327 Score: 236
Period size: 80 Copynumber: 2.9 Consensus size: 77
26219086 CGAATACACG
* * * *
26219096 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGA-TATAACACCAGCACGAATGCTCTTCGGG
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTATAAC-TC-GCACGAATGCTCTTC--G
* * *
26219160 GTTTAGCACGGATATA
62 GCTTAGCCCGGATACA
* * * * * * *
26219176 TCACTAGCACGAATGCTCTTCAGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGAC
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT-TATAACTCGCACGAATGCTCTTCGG-C
26219241 TTAGCCCGGATACA
64 TTAGCCCGGATACA
*
26219255 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATGC-CTTC-GC
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGA-TTA-TAACTCGCACGAATGCTCTTCGGC
26219318 TTAGCCCGGA
64 TTAGCCCGGA
26219328 ATTAGTATCT
Statistics
Matches: 125, Mismatches: 22, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
77 11 0.09
78 3 0.02
79 50 0.40
80 57 0.46
82 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (77 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTATAACTCGCACGAATGCTCTTCGGCTT
AGCCCGGATACA
Found at i:26219738 original size:29 final size:29
Alignment explanation
Indices: 26219699--26219777 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
26219689 CTTAATAATC
*
26219699 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
26219729 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
26219758 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
26219778 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:26221717 original size:37 final size:37
Alignment explanation
Indices: 26221667--26221745 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
26221657 TTATTACGAA
* * *
26221667 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
26221704 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
26221741 GTCTT
1 GTCTT
26221746 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:26221936 original size:49 final size:49
Alignment explanation
Indices: 26221864--26222320 Score: 600
Period size: 49 Copynumber: 10.0 Consensus size: 49
26221854 CCTTCGGACT
* * * * *
26221864 TATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
26221911 TGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
26221960 TATCAC--ATATATGCACTTTCACATTCATCACATCGGCCATTAGG-CC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
26222006 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
26222055 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG-CC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
26222103 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
26222152 TATCAC------AT--A----CACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
26222189 TATCAC------AT--A----CACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
26222226 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
26222275 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
26222321 TTACTATTAT
Statistics
Matches: 378, Mismatches: 14, Indels: 36
0.88 0.03 0.08
Matches are distributed among these distances:
37 71 0.19
41 1 0.00
43 4 0.01
45 1 0.00
46 8 0.02
47 83 0.22
48 85 0.22
49 125 0.33
ACGTcount: A:0.29, C:0.32, G:0.09, T:0.30
Consensus pattern (49 bp):
TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:26222093 original size:97 final size:97
Alignment explanation
Indices: 26221864--26222320 Score: 596
Period size: 97 Copynumber: 5.0 Consensus size: 97
26221854 CCTTCGGACT
* * * * * *
26221864 TATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATAC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG-CCTATCACATATATATAC
*
26221927 ACTTCCACATTCATCACATCGGCCATTAGGCCC
65 ACTTTCACATTCATCACATCGGCCATTAGGCCC
*
26221960 TATCAC--ATATATGCACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATACA
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATACA
*
26222023 CTTTCACATTCATCACATCGGCCATTAGGCCT
66 CTTTCACATTCATCACATCGGCCATTAGGCCC
26222055 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATACA
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATACA
26222120 CTTTCACATTCATCACATCGGCCATTAGGCCC
66 CTTTCACATTCATCACATCGGCCATTAGGCCC
26222152 TATCAC------AT--A----CACATTCATCACATCGGCCATTAGGCCCTATCAC------AT--
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG-CCTATCACATATATATAC
26222197 A----CACATTCATCACATCGGCCATTAGGCCC
65 ACTTTCACATTCATCACATCGGCCATTAGGCCC
26222226 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATATAC
26222289 ACTTTCACATTCATCACATCGGCCATTAGGCC
65 ACTTTCACATTCATCACATCGGCCATTAGGCC
26222321 TTACTATTAT
Statistics
Matches: 322, Mismatches: 11, Indels: 56
0.83 0.03 0.14
Matches are distributed among these distances:
74 34 0.11
78 1 0.00
80 4 0.01
82 1 0.00
85 27 0.08
86 39 0.12
89 1 0.00
90 2 0.01
91 2 0.01
92 1 0.00
95 55 0.17
96 62 0.19
97 93 0.29
ACGTcount: A:0.29, C:0.32, G:0.09, T:0.30
Consensus pattern (97 bp):
TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATACA
CTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:26222166 original size:37 final size:37
Alignment explanation
Indices: 26222124--26222234 Score: 222
Period size: 37 Copynumber: 3.0 Consensus size: 37
26222114 TATACACTTT
26222124 CACATTCATCACATCGGCCATTAGGCCCTATCACATA
1 CACATTCATCACATCGGCCATTAGGCCCTATCACATA
26222161 CACATTCATCACATCGGCCATTAGGCCCTATCACATA
1 CACATTCATCACATCGGCCATTAGGCCCTATCACATA
26222198 CACATTCATCACATCGGCCATTAGGCCCTATCACATA
1 CACATTCATCACATCGGCCATTAGGCCCTATCACATA
26222235 TATATACACT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 74 1.00
ACGTcount: A:0.30, C:0.35, G:0.11, T:0.24
Consensus pattern (37 bp):
CACATTCATCACATCGGCCATTAGGCCCTATCACATA
Found at i:26222321 original size:47 final size:48
Alignment explanation
Indices: 26222198--26222323 Score: 227
Period size: 47 Copynumber: 2.6 Consensus size: 48
26222188 CTATCACATA
*
26222198 CACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTT
1 CACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTT
26222247 CACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACACTTT
1 CACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTT
26222294 CACATTCATCACATCGGCCATTAGGCCTTA
1 CACATTCATCACATCGGCCATTAGGCCTTA
26222324 CTATTATTTC
Statistics
Matches: 76, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
47 43 0.57
49 33 0.43
ACGTcount: A:0.29, C:0.31, G:0.10, T:0.30
Consensus pattern (48 bp):
CACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTT
Found at i:26227266 original size:33 final size:32
Alignment explanation
Indices: 26227224--26227332 Score: 138
Period size: 33 Copynumber: 3.5 Consensus size: 32
26227214 CTTGGTGGAT
26227224 TCAGCACTTAGCAACCACCAGTGAGTCGGGGAA
1 TCAGCACTTAGCAACCACCA-TGAGTCGGGGAA
26227257 TCAGCACTTAGCAACC-CC-TG-G--GGGGAA
1 TCAGCACTTAGCAACCACCATGAGTCGGGGAA
* *
26227284 TCAGCACTTAGCAACCACCAATGATTCGGGAAA
1 TCAGCACTTAGCAACCACC-ATGAGTCGGGGAA
*
26227317 TAAGCACTTAGCAACC
1 TCAGCACTTAGCAACC
26227333 CCTTATACAA
Statistics
Matches: 67, Mismatches: 3, Indels: 12
0.82 0.04 0.15
Matches are distributed among these distances:
27 22 0.33
28 2 0.03
29 1 0.01
30 4 0.06
32 2 0.03
33 36 0.54
ACGTcount: A:0.32, C:0.28, G:0.23, T:0.17
Consensus pattern (32 bp):
TCAGCACTTAGCAACCACCATGAGTCGGGGAA
Found at i:26227401 original size:74 final size:75
Alignment explanation
Indices: 26227280--26227486 Score: 269
Period size: 76 Copynumber: 2.8 Consensus size: 75
26227270 ACCCCTGGGG
* * *
26227280 GGAATCAGCACTTAGCAACCACCAATGA-TTCGGGAAATAAGCACTTAGCAACCCCTTATACA-A
1 GGAATCAGCACTTAGCAACCACCGATGATTTAGGG-AATCAGCACTTAGCAACCCCTT-T-CATA
**
26227343 TCCG-TTACA-GT
63 TCCGAAGACACGT
*
26227354 GGAATCAGCACTTACCAACCACCGATGATTTAGGGAATCAGCACTTAGCAACCCCTTTCATATCC
1 GGAATCAGCACTTAGCAACCACCGATGATTTAGGGAATCAGCACTTAGCAACCCCTTTCATATCC
26227419 GAAGACACTGT
66 GAAGACAC-GT
* * *
26227430 GGAATCAGCACTTAGAAACCATCGATGATTTGGGGAATCAGCACTTAGCAACCCCTT
1 GGAATCAGCACTTAGCAACCACCGATGATTTAGGGAATCAGCACTTAGCAACCCCTT
26227487 GGGGGAATCA
Statistics
Matches: 118, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
72 2 0.02
73 6 0.05
74 50 0.42
75 5 0.04
76 55 0.47
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (75 bp):
GGAATCAGCACTTAGCAACCACCGATGATTTAGGGAATCAGCACTTAGCAACCCCTTTCATATCC
GAAGACACGT
Found at i:26233437 original size:40 final size:40
Alignment explanation
Indices: 26233368--26233520 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
26233358 AAAATTATTC
** * * **
26233368 TGATTGCACATATGTACCCCTGTTCGTACTTCGGTACCCC
1 TGATTGCACATACATGCCCCTGTTCGTACTTTGGTACCAA
* * * * *
26233408 TGATTACACATACTTGCCCATGTTTGTACTTTGATACCAA
1 TGATTGCACATACATGCCCCTGTTCGTACTTTGGTACCAA
* *
26233448 TGATTGCATATACGTGCCCCTGTTCGTACTTTGGTACCAA
1 TGATTGCACATACATGCCCCTGTTCGTACTTTGGTACCAA
*
26233488 TGATTGCACATACATGCCCCTGTTTGTACTTTG
1 TGATTGCACATACATGCCCCTGTTCGTACTTTG
26233521 ATTCCCATTA
Statistics
Matches: 94, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 94 1.00
ACGTcount: A:0.21, C:0.26, G:0.17, T:0.36
Consensus pattern (40 bp):
TGATTGCACATACATGCCCCTGTTCGTACTTTGGTACCAA
Found at i:26233506 original size:80 final size:80
Alignment explanation
Indices: 26233368--26233522 Score: 229
Period size: 80 Copynumber: 1.9 Consensus size: 80
26233358 AAAATTATTC
* ** *
26233368 TGATTGCACATATGTACCCCTGTTCGTACTTCGGTACCCCTGATTACACATACTTGCCCATGTTT
1 TGATTGCACATACGTACCCCTGTTCGTACTTCGGTACCAATGATTACACATACATGCCCATGTTT
26233433 GTACTTTGATACCAA
66 GTACTTTGATACCAA
* * * * *
26233448 TGATTGCATATACGTGCCCCTGTTCGTACTTTGGTACCAATGATTGCACATACATGCCCCTGTTT
1 TGATTGCACATACGTACCCCTGTTCGTACTTCGGTACCAATGATTACACATACATGCCCATGTTT
26233513 GTACTTTGAT
66 GTACTTTGAT
26233523 TCCCATTAAT
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
80 66 1.00
ACGTcount: A:0.21, C:0.26, G:0.17, T:0.36
Consensus pattern (80 bp):
TGATTGCACATACGTACCCCTGTTCGTACTTCGGTACCAATGATTACACATACATGCCCATGTTT
GTACTTTGATACCAA
Found at i:26233544 original size:80 final size:80
Alignment explanation
Indices: 26233384--26233548 Score: 215
Period size: 80 Copynumber: 2.1 Consensus size: 80
26233374 CACATATGTA
** *
26233384 CCCCTGTTCGTACTTCGGTACCCCTGATTACACATACTTGCCCATGTTTGTACTTTGATACCAAT
1 CCCCTGTTCGTACTTCGGTACCAATGATTACACATACATGCCCATGTTTGTACTTTGATACCAAT
*
26233449 GATTGCATATACGTG
66 GAATGCATATACGTG
* * * * *
26233464 CCCCTGTTCGTACTTTGGTACCAATGATTGCACATACATGCCCCTGTTTGTACTTTGATTCCCAT
1 CCCCTGTTCGTACTTCGGTACCAATGATTACACATACATGCCCATGTTTGTACTTTGATACCAAT
* *
26233529 TAATGCACT-TTCGTG
66 GAATGCA-TATACGTG
26233544 CCCCT
1 CCCCT
26233549 CTTTATGCTC
Statistics
Matches: 73, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 72 0.99
81 1 0.01
ACGTcount: A:0.19, C:0.29, G:0.16, T:0.36
Consensus pattern (80 bp):
CCCCTGTTCGTACTTCGGTACCAATGATTACACATACATGCCCATGTTTGTACTTTGATACCAAT
GAATGCATATACGTG
Found at i:26233546 original size:40 final size:40
Alignment explanation
Indices: 26233368--26233548 Score: 157
Period size: 40 Copynumber: 4.5 Consensus size: 40
26233358 AAAATTATTC
* * * * * * **
26233368 TGATTGCACATATGTACCCCTGTTCGTACTTCGGTACCCC
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTTGATACCAA
* * * *
26233408 TGATTACACATACTTGCCCATGTTTGTACTTTGATACCAA
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTTGATACCAA
* *
26233448 TGATTGCA-TATACGTGCCCCTGTTCGTACTTTGGTACCAA
1 TGATTGCACT-TACGTGCCCCTGTTTGTACTTTGATACCAA
* * * *
26233488 TGATTGCACATACATGCCCCTGTTTGTACTTTGATTCCCA
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTTGATACCAA
* * *
26233528 TTAATGCACTTTCGTGCCCCT
1 TGATTGCACTTACGTGCCCCT
26233549 CTTTATGCTC
Statistics
Matches: 112, Mismatches: 27, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
40 112 1.00
ACGTcount: A:0.20, C:0.28, G:0.16, T:0.36
Consensus pattern (40 bp):
TGATTGCACTTACGTGCCCCTGTTTGTACTTTGATACCAA
Found at i:26242195 original size:27 final size:27
Alignment explanation
Indices: 26242140--26242202 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 27
26242130 AAAGGTTGTT
* *
26242140 AAATGACTGAAATACCCCTGTAAGTTA
1 AAATGACTAAAATACCCCTGTAAGGTA
26242167 AAATGACTAAAATACCACC-G-AAGGGTA
1 AAATGACTAAAATACC-CCTGTAA-GGTA
26242194 AAATGACTA
1 AAATGACTA
26242203 TTTTGCCCTC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
26 2 0.06
27 28 0.88
28 2 0.06
ACGTcount: A:0.46, C:0.17, G:0.16, T:0.21
Consensus pattern (27 bp):
AAATGACTAAAATACCCCTGTAAGGTA
Found at i:26251172 original size:51 final size:49
Alignment explanation
Indices: 26251043--26251233 Score: 213
Period size: 51 Copynumber: 3.8 Consensus size: 49
26251033 AGTGAAAGTC
* *
26251043 ATGGTCACGTGTGTAGTACTATTTGCAGGCTACTATGTGTACCGGAATG-
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACC-GAATGT
* *
26251092 ATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAATAGT
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAAT-GT
* * ** ** *
26251143 TTCGATCATGTGTGTAGTACTATGTGCAGGCTACTACATGTATCGAATTGT
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAA-TGT
*
26251194 AATGGTCACATGTGTAGTACTATGCGCAGGCTACTATGTG
1 -ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTG
26251234 AATTGATTAG
Statistics
Matches: 116, Mismatches: 21, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
49 6 0.05
50 38 0.33
51 70 0.60
52 2 0.02
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (49 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAATGT
Found at i:26264905 original size:16 final size:16
Alignment explanation
Indices: 26264886--26264920 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
26264876 TAGTAATTTT
26264886 AATGTT-AAATGACTAA
1 AATGTTAAAATGA-TAA
26264902 AATGTTAAAATGATAA
1 AATGTTAAAATGATAA
26264918 AAT
1 AAT
26264921 TACGAGGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.54, C:0.03, G:0.11, T:0.31
Consensus pattern (16 bp):
AATGTTAAAATGATAA
Found at i:26267189 original size:45 final size:45
Alignment explanation
Indices: 26267140--26267228 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
26267130 AATTTGAGCT
*
26267140 AAATTTTATTATTAATTAAATCGGGTTTAATTGTAAAATAAGGTA
1 AAATTTTATTATTAATTAAATCGGGTTTAATTGTAAAACAAGGTA
*
26267185 AAATTTTATTATTAATTAAATTGGGTTTAATTGTAAAACAAGGT
1 AAATTTTATTATTAATTAAATCGGGTTTAATTGTAAAACAAGGT
26267229 GAAGTTTAGA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.42, C:0.02, G:0.13, T:0.43
Consensus pattern (45 bp):
AAATTTTATTATTAATTAAATCGGGTTTAATTGTAAAACAAGGTA
Found at i:26268314 original size:17 final size:17
Alignment explanation
Indices: 26268292--26268335 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
26268282 TAATTAGTAC
26268292 ATTAATTAATGATTAAA
1 ATTAATTAATGATTAAA
* *
26268309 ATTAATTAATGGTTCAA
1 ATTAATTAATGATTAAA
26268326 ATTAATTAAT
1 ATTAATTAAT
26268336 TATGGATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.48, C:0.02, G:0.07, T:0.43
Consensus pattern (17 bp):
ATTAATTAATGATTAAA
Found at i:26275678 original size:17 final size:15
Alignment explanation
Indices: 26275651--26275689 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
26275641 TTGCTGGGGA
*
26275651 TGTTGTTTGTTTGATG
1 TGTTTTTTGTTTG-TG
26275667 TGTATTTTTGTTTGTG
1 TGT-TTTTTGTTTGTG
26275683 TGTTTTT
1 TGTTTTT
26275690 ACACTTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 4 0.19
16 8 0.38
17 9 0.43
ACGTcount: A:0.05, C:0.00, G:0.26, T:0.69
Consensus pattern (15 bp):
TGTTTTTTGTTTGTG
Found at i:26277527 original size:19 final size:18
Alignment explanation
Indices: 26277503--26277540 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
26277493 ACGATGAAGT
*
26277503 TTCGTTCTTCTTGAGTCAA
1 TTCGTTCTACTTGA-TCAA
26277522 TTCGTTCTACTTGATCAA
1 TTCGTTCTACTTGATCAA
26277540 T
1 T
26277541 GAAGTTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.18, C:0.21, G:0.13, T:0.47
Consensus pattern (18 bp):
TTCGTTCTACTTGATCAA
Found at i:26278590 original size:29 final size:29
Alignment explanation
Indices: 26278556--26278628 Score: 119
Period size: 29 Copynumber: 2.5 Consensus size: 29
26278546 ATGTATTAGT
* *
26278556 TTAGGACATATTTAAAACACTTGAACTAA
1 TTAGGACATATTTAAAACACCTAAACTAA
*
26278585 TTAGGACATATTTAAAACTCCTAAACTAA
1 TTAGGACATATTTAAAACACCTAAACTAA
26278614 TTAGGACATATTTAA
1 TTAGGACATATTTAA
26278629 TAATATCTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.44, C:0.14, G:0.10, T:0.33
Consensus pattern (29 bp):
TTAGGACATATTTAAAACACCTAAACTAA
Found at i:26284670 original size:27 final size:27
Alignment explanation
Indices: 26284640--26284814 Score: 199
Period size: 27 Copynumber: 6.4 Consensus size: 27
26284630 TTGAGTCCGG
* * * *
26284640 ACACTCAGTGCTATATAATCAACTCGC
1 ACACTTAGTGCTACATAGTCAAATCGC
* *
26284667 ACACTTAGTGCTACGTAATCAAATCGC
1 ACACTTAGTGCTACATAGTCAAATCGC
26284694 ACACTTAGTGCTACATAGTCAAACTCGC
1 ACACTTAGTGCTACATAGTCAAA-TCGC
** * *
26284722 ACACTTAGTGCCGCATGGTCAATTCGC
1 ACACTTAGTGCTACATAGTCAAATCGC
* **
26284749 ACACTTAGTGC-ATCATATTCATTTCGC
1 ACACTTAGTGCTA-CATAGTCAAATCGC
*
26284776 ACACTTAGTGCAACATAGTCAAATCGC
1 ACACTTAGTGCTACATAGTCAAATCGC
26284803 ACACTTAGTGCT
1 ACACTTAGTGCT
26284815 GTACAATTTA
Statistics
Matches: 127, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (27 bp):
ACACTTAGTGCTACATAGTCAAATCGC
Found at i:26284777 original size:82 final size:81
Alignment explanation
Indices: 26284658--26284813 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26284648 TGCTATATAA
* *
26284658 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
26284723 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
26284740 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
26284804 CACTTAGTGC
65 CACTTAGTGC
26284814 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26288101 original size:18 final size:17
Alignment explanation
Indices: 26288069--26288102 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
26288059 TGAAAATCAG
*
26288069 GCCAAATTGTTAAAGTA
1 GCCAAATTGTAAAAGTA
26288086 GCCAAATTTGTAAAAGT
1 GCCAAA-TTGTAAAAGT
26288103 TTTAATTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (17 bp):
GCCAAATTGTAAAAGTA
Found at i:26298624 original size:27 final size:27
Alignment explanation
Indices: 26298593--26298770 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26298583 TAAATTGTAC
26298593 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
26298620 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26298646 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
26298674 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
26298702 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26298729 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
26298756 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26298771 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Done.