Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 91 of 196
Found at i:26298707 original size:82 final size:81
Alignment explanation
Indices: 26298594--26298749 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26298584 AAATTGTACA
* *
26298594 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
26298658 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
26298675 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
26298740 TGCGAGTTGA
65 TGCGAATTGA
26298750 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26298761 original size:82 final size:81
Alignment explanation
Indices: 26298590--26298770 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
26298580 GATTAAATTG
* *
26298590 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26298655 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
26298671 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
26298735 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
26298753 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26298771 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26302311 original size:39 final size:40
Alignment explanation
Indices: 26302234--26302380 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
26302224 TAGCTCCTCG
* * *
26302234 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
26302274 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
26302313 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
26302353 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
26302381 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:26302391 original size:80 final size:80
Alignment explanation
Indices: 26302280--26302460 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
26302270 CTCATTCAAT
* * *
26302280 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
26302343 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
26302359 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
26302423 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
26302440 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
26302461 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:26302420 original size:40 final size:40
Alignment explanation
Indices: 26302277--26302460 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
26302267 TAACTCATTC
* *
26302277 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
26302317 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
26302357 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
26302397 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
26302438 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
26302461 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:26304982 original size:27 final size:27
Alignment explanation
Indices: 26304951--26305128 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
26304941 TAAATTGTAC
26304951 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
26304978 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26305004 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
26305032 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
26305060 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
26305087 AGCACTAAGGGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
26305114 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26305129 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:26305092 original size:82 final size:81
Alignment explanation
Indices: 26304952--26305107 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
26304942 AAATTGTACA
* * *
26304952 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGGGT
26305017 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** *
26305033 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGG
*
26305097 GTGCGAGTTGA
64 GTGCGAATTGA
26305108 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGGGT
GCGAATTGACCATGCG
Found at i:26305119 original size:82 final size:81
Alignment explanation
Indices: 26304948--26305128 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
26304938 GATTAAATTG
* *
26304948 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
*
26305013 GTGTGCGAATTGACCA
66 GGGTGCGAATTGACCA
* * ** *
26305029 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
26305093 AAGGGTGCGAGTTGATTA
64 AAGGGTGCGAATTGACCA
* *
26305111 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26305129 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GGGTGCGAATTGACCA
Found at i:26310134 original size:27 final size:26
Alignment explanation
Indices: 26310104--26310193 Score: 83
Period size: 27 Copynumber: 3.3 Consensus size: 26
26310094 TTAACTTATA
*
26310104 AGGGTATTTCGATAATTTTTCAAACTG
1 AGGGTATTTCGATAATTTTACAAA-TG
* * *
26310131 AGGGTATTTTGGTAATTTTGCAAATCG
1 AGGGTATTTCGATAATTTTACAAAT-G
* *
26310158 AGGGTACTTC-AGTAATTTTACAAGTTG
1 AGGGTATTTCGA-TAATTTTACAA-ATG
26310185 AGGGTATTT
1 AGGGTATTT
26310194 TAGTAATTTT
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
26 1 0.02
27 49 0.96
28 1 0.02
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (26 bp):
AGGGTATTTCGATAATTTTACAAATG
Found at i:26310198 original size:27 final size:27
Alignment explanation
Indices: 26310116--26310203 Score: 104
Period size: 27 Copynumber: 3.3 Consensus size: 27
26310106 GGTATTTCGA
* * *
26310116 TAATTTTTCAAACTGAGGGTATTTTGG
1 TAATTTTACAAATTGAGGGTATTTTAG
* * * *
26310143 TAATTTTGCAAATCGAGGGTACTTCAG
1 TAATTTTACAAATTGAGGGTATTTTAG
*
26310170 TAATTTTACAAGTTGAGGGTATTTTAG
1 TAATTTTACAAATTGAGGGTATTTTAG
26310197 TAATTTT
1 TAATTTT
26310204 GTAAAACCAA
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.28, C:0.08, G:0.20, T:0.43
Consensus pattern (27 bp):
TAATTTTACAAATTGAGGGTATTTTAG
Found at i:26312281 original size:16 final size:15
Alignment explanation
Indices: 26312254--26312287 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
26312244 ATAACTAGTA
*
26312254 TATAATTATATTTAT
1 TATAATTATATTAAT
26312269 TATAATATATATTAAT
1 TATAAT-TATATTAAT
26312285 TAT
1 TAT
26312288 TATCAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATAATTATATTAAT
Found at i:26316122 original size:19 final size:19
Alignment explanation
Indices: 26316089--26316149 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 19
26316079 TTGAGAGTAA
*
26316089 AGGGTGAAAAGTAAAAGTTT
1 AGGG-GAAAAATAAAAGTTT
26316109 AGGGGAAAAATAAAAAGTTT
1 AGGGGAAAAAT-AAAAGTTT
*
26316129 -TGGG--AAATAAAAGTTT
1 AGGGGAAAAATAAAAGTTT
26316145 GAGGG
1 -AGGG
26316150 AAAGTAAATA
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
16 8 0.23
17 4 0.11
18 2 0.06
19 9 0.26
20 12 0.34
ACGTcount: A:0.46, C:0.00, G:0.31, T:0.23
Consensus pattern (19 bp):
AGGGGAAAAATAAAAGTTT
Found at i:26316150 original size:17 final size:16
Alignment explanation
Indices: 26316100--26316157 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 16
26316090 GGGTGAAAAG
26316100 TAAAAGTTTAGGGGAAAAA
1 TAAAAGTTTA-GGG--AAA
*
26316119 TAAAAAGTTTTGGGAAA
1 T-AAAAGTTTAGGGAAA
26316136 TAAAAGTTTGAGGGAAA
1 TAAAAGTTT-AGGGAAA
26316153 GTAAA
1 -TAAA
26316158 TAGGGGGGAG
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
16 8 0.24
17 10 0.29
18 4 0.12
19 4 0.12
20 8 0.24
ACGTcount: A:0.50, C:0.00, G:0.26, T:0.24
Consensus pattern (16 bp):
TAAAAGTTTAGGGAAA
Found at i:26318516 original size:5 final size:5
Alignment explanation
Indices: 26318508--26318532 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
26318498 AAACTTTTGT
26318508 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
26318533 CTCAGTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:26334402 original size:27 final size:27
Alignment explanation
Indices: 26334372--26334549 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26334362 ATATTGAGTC
* * * *
26334372 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
26334399 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26334426 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
26334454 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
26334481 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
26334508 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26334535 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26334550 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:26334511 original size:82 final size:81
Alignment explanation
Indices: 26334393--26334548 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26334383 TGCTATATAA
* *
26334393 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
26334458 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
26334475 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
26334539 CACTTAGTGC
65 CACTTAGTGC
26334549 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26342412 original size:25 final size:26
Alignment explanation
Indices: 26342357--26342529 Score: 108
Period size: 25 Copynumber: 6.5 Consensus size: 26
26342347 TTATTGAGTC
* * *
26342357 CGCACACTGCAGTGCTATATAATCAACT
1 CGCACACT-TAGTGCTACAT-ATCAAAT
*
26342385 CGCACACTTAGTGC-ACGTATCAAAT
1 CGCACACTTAGTGCTACATATCAAAT
26342410 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATA-TCAAA-T
** * *
26342438 CGCACACTTA-TGCCGCATGTCACATT
1 CGCACACTTAGTGCTACATATCA-AAT
**
26342464 CGCACAC-TAGTGC-ATCAATATC-TTT
1 CGCACACTTAGTGCTA-C-ATATCAAAT
*
26342489 CG-ACACTTAGTGACAACATAGTCAAAAT
1 CGCACACTTAGTG-CTACATA-TC-AAAT
26342517 CGCAC-CTTAGTGC
1 CGCACACTTAGTGC
26342530 CTGTCCAATT
Statistics
Matches: 117, Mismatches: 14, Indels: 29
0.73 0.09 0.18
Matches are distributed among these distances:
24 4 0.03
25 34 0.29
26 25 0.21
27 23 0.20
28 29 0.25
29 2 0.02
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
CGCACACTTAGTGCTACATATCAAAT
Found at i:26346180 original size:39 final size:39
Alignment explanation
Indices: 26346134--26346251 Score: 122
Period size: 39 Copynumber: 3.1 Consensus size: 39
26346124 GATCGACGGT
26346134 ATTTGTGCGAGTTATTAATTCGGGTTAAGTCCCGAAGGC
1 ATTTGTGCGAGTTATTAATTCGGGTTAAGTCCCGAAGGC
* *
26346173 CTTTGTGCGAG-TACTAATTCCGGGTT-AGTCCCG-AGGC
1 ATTTGTGCGAGTTATTAATT-CGGGTTAAGTCCCGAAGGC
* *
26346210 ATTCGGTGCGAGTT-TTAAAATCCGGGTTAAG--CCGAAGGC
1 ATT-TGTGCGAGTTATT--AATTCGGGTTAAGTCCCGAAGGC
26346249 ATT
1 ATT
26346252 GAATGAGTTA
Statistics
Matches: 66, Mismatches: 6, Indels: 14
0.77 0.07 0.16
Matches are distributed among these distances:
37 6 0.09
38 25 0.38
39 30 0.45
40 5 0.08
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.31
Consensus pattern (39 bp):
ATTTGTGCGAGTTATTAATTCGGGTTAAGTCCCGAAGGC
Found at i:26346219 original size:38 final size:38
Alignment explanation
Indices: 26346138--26346252 Score: 103
Period size: 38 Copynumber: 3.0 Consensus size: 38
26346128 GACGGTATTT
* * *
26346138 GTGCGAGTTATTAATTCGGGTTAAGTCCCGAAGGCCTTT
1 GTGCGAG-TACTAATTCGGGTTAAGTCCCGAAGGCATTG
26346177 GTGCGAGTACTAATTCCGGGTT-AGTCCCG-AGGCATTCG
1 GTGCGAGTACTAATT-CGGGTTAAGTCCCGAAGGCATT-G
** *
26346215 GTGCGAGTTTTAAAATCCGGGTTAAG--CCGAAGGCATTG
1 GTGCGAGTACT--AATTCGGGTTAAGTCCCGAAGGCATTG
26346253 AATGAGTTAC
Statistics
Matches: 64, Mismatches: 6, Indels: 13
0.77 0.07 0.16
Matches are distributed among these distances:
37 6 0.09
38 27 0.42
39 26 0.41
40 5 0.08
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (38 bp):
GTGCGAGTACTAATTCGGGTTAAGTCCCGAAGGCATTG
Found at i:26353955 original size:40 final size:41
Alignment explanation
Indices: 26353911--26353995 Score: 120
Period size: 40 Copynumber: 2.1 Consensus size: 41
26353901 GGACTAAGAT
* * *
26353911 CCGAAGG-TATTTGTGCGAGTTATTAA-TTCCGGGTTTAGTC
1 CCGAAGGCT-TTTGTGCGAGATACTAATTTCCGGGTTAAGTC
26353951 CCGAAGGCTTTTGTGCGAGATACTAATTTCCGGGTTAAGTC
1 CCGAAGGCTTTTGTGCGAGATACTAATTTCCGGGTTAAGTC
26353992 CCGA
1 CCGA
26353996 GGCGATTCCG
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
40 22 0.55
41 18 0.45
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.33
Consensus pattern (41 bp):
CCGAAGGCTTTTGTGCGAGATACTAATTTCCGGGTTAAGTC
Found at i:26363460 original size:27 final size:27
Alignment explanation
Indices: 26363430--26363607 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
26363420 ATATTGAGTC
* * * *
26363430 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* * *
26363457 CGCACCCTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26363484 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
26363512 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
26363539 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
26363566 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26363593 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26363608 GTACATTTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:26366176 original size:40 final size:40
Alignment explanation
Indices: 26366092--26366274 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
26366082 TTGAATGCTG
* * *
26366092 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
** * *
26366131 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
26366172 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
26366212 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT--TAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAT
26366251 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
26366275 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
38 1 0.01
39 27 0.22
40 85 0.69
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:26366229 original size:80 final size:80
Alignment explanation
Indices: 26366092--26366271 Score: 217
Period size: 80 Copynumber: 2.3 Consensus size: 80
26366082 TTGAATGCTG
* * *
26366092 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* * *
26366156 TGTGCGAGTTATTAAT
66 CGTGCGAGTT-TAAAA
**
26366172 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
26366233 ATTCGTGCGAGTTTAAAA
63 ATTCGTGCGAGTTTAAAA
26366251 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
26366272 ATTGAATGAG
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
79 26 0.30
80 53 0.60
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTAAAA
Found at i:26366295 original size:39 final size:38
Alignment explanation
Indices: 26366173--26366321 Score: 131
Period size: 39 Copynumber: 3.8 Consensus size: 38
26366163 GTTATTAATT
* ** * *
26366173 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACTAA-A
**
26366213 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT--TAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-AAA
*
26366251 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTA-AA
* *
26366291 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
26366322 GAGCTATATC
Statistics
Matches: 93, Mismatches: 9, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
38 7 0.08
39 48 0.52
40 38 0.41
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAAA
Found at i:26366329 original size:40 final size:39
Alignment explanation
Indices: 26366213--26366334 Score: 97
Period size: 39 Copynumber: 3.1 Consensus size: 39
26366203 GATACTAATT
* ** * *
26366213 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGT--TTAAAA
1 CCGGGCTAAGTCCCGAAGGCATT-GAACGAGTGACTATAA
* * *
26366251 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTGAACGAGTGACTATAA
* *
26366291 CCGGGCTATGTCCCGAAGGCACTTGAACGAG-GAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCA-TTGAACGAGTGA-CTATAA
26366331 CCGG
1 CCGG
26366335 TTAAATTCCG
Statistics
Matches: 69, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
38 5 0.07
39 43 0.62
40 21 0.30
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTGAACGAGTGACTATAA
Found at i:26373930 original size:40 final size:40
Alignment explanation
Indices: 26373846--26374029 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
26373836 TTGAATGCTG
* * * *
26373846 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
26373885 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
26373926 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
26373966 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
26374006 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
26374030 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:26373983 original size:80 final size:81
Alignment explanation
Indices: 26373846--26374026 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
26373836 TTGAATGCTG
* * *
26373846 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
26373910 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
26373926 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
26373987 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
26374006 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
26374027 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:26374050 original size:39 final size:38
Alignment explanation
Indices: 26373927--26374076 Score: 131
Period size: 40 Copynumber: 3.8 Consensus size: 38
26373917 GTTATTAATT
* ** * *
26373927 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACTAA-A
** *
26373967 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-AAA
*
26374006 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTA-AA
* *
26374046 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
26374077 GAGCTAATCC
Statistics
Matches: 93, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
39 30 0.32
40 63 0.68
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAAA
Found at i:26382292 original size:27 final size:27
Alignment explanation
Indices: 26382262--26382439 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26382252 ATATTGAGTC
* * * *
26382262 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
26382289 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26382316 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
26382344 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
26382371 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
26382398 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26382425 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26382440 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:26382401 original size:82 final size:81
Alignment explanation
Indices: 26382283--26382438 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26382273 TGCTATATAA
* *
26382283 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
26382348 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
26382365 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
26382429 CACTTAGTGC
65 CACTTAGTGC
26382439 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26386592 original size:27 final size:28
Alignment explanation
Indices: 26386554--26386744 Score: 114
Period size: 27 Copynumber: 7.1 Consensus size: 28
26386544 CTGGACCGGC
* *
26386554 AATGACTGAAATAACCTCGAT-GGGTAA
1 AATGACTGAAATAACCCCCATAGGGTAA
* *
26386581 AATGATTGAAAT-GCCCCCATAGGGTAA
1 AATGACTGAAATAACCCCCATAGGGTAA
* **
26386608 AATGACTGAAAT-ACCCCCGTAGGGTGG
1 AATGACTGAAATAACCCCCATAGGGTAA
** *
26386635 AAT-ACCAAAAT-ACCCCCATAAGGTAA
1 AATGACTGAAATAACCCCCATAGGGTAA
* *
26386661 AATGA-TCGTAAT-ACCCCTATAGGGTAA
1 AATGACT-GAAATAACCCCCATAGGGTAA
* **
26386688 AATGA-TCGTAATAA-CCCTGTAGGGTAA
1 AATGACT-GAAATAACCCCCATAGGGTAA
* * * * *
26386715 AATAACCGTAAT-GCCCCTATAGGGTAA
1 AATGACTGAAATAACCCCCATAGGGTAA
26386742 AAT
1 AAT
26386745 AATCGTAATG
Statistics
Matches: 133, Mismatches: 25, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
26 25 0.19
27 107 0.80
28 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.22
Consensus pattern (28 bp):
AATGACTGAAATAACCCCCATAGGGTAA
Found at i:26386745 original size:27 final size:27
Alignment explanation
Indices: 26386575--26386834 Score: 227
Period size: 27 Copynumber: 9.7 Consensus size: 27
26386565 TAACCTCGAT
* * * *
26386575 GGGTAAAATGATTGAAATGCCCCCATA
1 GGGTAAAATGATCGTAATACCCCTATA
* **
26386602 GGGTAAAATGA-CTGAAATACCCCCGTA
1 GGGTAAAATGATC-GTAATACCCCTATA
** * ** *
26386629 GGGTGGAAT-ACCAAAATACCCCCATA
1 GGGTAAAATGATCGTAATACCCCTATA
*
26386655 AGGTAAAATGATCGTAATACCCCTATA
1 GGGTAAAATGATCGTAATACCCCTATA
* *
26386682 GGGTAAAATGATCGTAATAACCCTGTA
1 GGGTAAAATGATCGTAATACCCCTATA
* * *
26386709 GGGTAAAATAACCGTAATGCCCCTATA
1 GGGTAAAATGATCGTAATACCCCTATA
* * * *
26386736 GGGTAAAATAATCGTAATGCCTCTGTA
1 GGGTAAAATGATCGTAATACCCCTATA
* * * **
26386763 AGGTAAAATGACCGTAATACCTCGGTA
1 GGGTAAAATGATCGTAATACCCCTATA
*
26386790 GGATAAAATGATCGTAATACCCCTATA
1 GGGTAAAATGATCGTAATACCCCTATA
*
26386817 GGGTAAAATGACCGTAAT
1 GGGTAAAATGATCGTAAT
26386835 GTCCTGGTGG
Statistics
Matches: 192, Mismatches: 38, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
26 19 0.10
27 173 0.90
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.23
Consensus pattern (27 bp):
GGGTAAAATGATCGTAATACCCCTATA
Found at i:26386768 original size:81 final size:81
Alignment explanation
Indices: 26386575--26386835 Score: 256
Period size: 81 Copynumber: 3.2 Consensus size: 81
26386565 TAACCTCGAT
* * * * * * * * * **
26386575 GGGTAAAATGATTGAAATGCCCCCATAGGGTAAAATGACTGAAATACCCCCGTAGGGTGGAAT-A
1 GGGTAAAATGATCGTAATGCCCCTATAAGGTAAAATGACCGTAATACCTCGGTAGGATAAAATAA
** *
26386639 CCAAAATACCCCCATA
66 CCGTAATACCCCTATA
* * * * * *
26386655 AGGTAAAATGATCGTAATACCCCTATAGGGTAAAATGATCGTAATAACC-CTGTAGGGTAAAATA
1 GGGTAAAATGATCGTAATGCCCCTATAAGGTAAAATGACCGTAAT-ACCTCGGTAGGATAAAATA
*
26386719 ACCGTAATGCCCCTATA
65 ACCGTAATACCCCTATA
* * * *
26386736 GGGTAAAATAATCGTAATGCCTCTGTAAGGTAAAATGACCGTAATACCTCGGTAGGATAAAATGA
1 GGGTAAAATGATCGTAATGCCCCTATAAGGTAAAATGACCGTAATACCTCGGTAGGATAAAATAA
*
26386801 TCGTAATACCCCTATA
66 CCGTAATACCCCTATA
*
26386817 GGGTAAAATGACCGTAATG
1 GGGTAAAATGATCGTAATG
26386836 TCCTGGTGGG
Statistics
Matches: 149, Mismatches: 29, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
80 51 0.34
81 98 0.66
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.23
Consensus pattern (81 bp):
GGGTAAAATGATCGTAATGCCCCTATAAGGTAAAATGACCGTAATACCTCGGTAGGATAAAATAA
CCGTAATACCCCTATA
Found at i:26386950 original size:24 final size:23
Alignment explanation
Indices: 26386874--26386950 Score: 66
Period size: 24 Copynumber: 3.3 Consensus size: 23
26386864 CCTCGAGGTC
*
26386874 AAATGATT-ATTTTGTCTGTGGTT
1 AAATGATTGA-TTTGTCTGTGTTT
* * *
26386897 AAATAACTGATTTGTCTATGTTTT
1 AAATGATTGATTTGTCTGTG-TTT
**
26386921 GTATGATTGATTTGTCTGTGATTT
1 AAATGATTGATTTGTCTGTG-TTT
26386945 AAATGA
1 AAATGA
26386951 CTAACTCTGA
Statistics
Matches: 40, Mismatches: 12, Indels: 3
0.73 0.22 0.05
Matches are distributed among these distances:
23 15 0.38
24 25 0.62
ACGTcount: A:0.26, C:0.05, G:0.19, T:0.49
Consensus pattern (23 bp):
AAATGATTGATTTGTCTGTGTTT
Found at i:26387170 original size:32 final size:31
Alignment explanation
Indices: 26387129--26387345 Score: 120
Period size: 32 Copynumber: 6.7 Consensus size: 31
26387119 GCTGCGATGC
26387129 TACTGATGGCTTTGTGCCAATCATAGTATCAT
1 TACTGATGGCTTTGTGCCAATCATA-TATCAT
* ** * *
26387161 TACTGATGGCTTTGTACTGATAATAGTATCGT
1 TACTGATGGCTTTGTGCCAATCATA-TATCAT
* * ** *
26387193 TACTAATGGCTTTGTTCGGATCATATTTCATTGT
1 TACTGATGGCTTTGTGCCAATCATATATCA---T
*
26387227 TACTGATGG-TTGTGTGCCGATC--ATATCACT
1 TACTGATGGCTT-TGTGCCAATCATATATCA-T
* * * * *
26387257 GCTACTGATTGCTTTGTGCCAGTCATGTTACCGT
1 --TACTGATGGCTTTGTGCCAATCAT-ATATCAT
*
26387291 TACTGATGGCTATGTGCCAATCATATCACTGCA-
1 TACTGATGGCTTTGTGCCAATCATAT-A-T-CAT
*
26387324 -ACTGATGGCTTTGTTCCAATCA
1 TACTGATGGCTTTGTGCCAATCA
26387346 CATTATTGTA
Statistics
Matches: 142, Mismatches: 30, Indels: 26
0.72 0.15 0.13
Matches are distributed among these distances:
30 1 0.01
31 4 0.03
32 111 0.78
33 4 0.03
34 19 0.13
35 3 0.02
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.38
Consensus pattern (31 bp):
TACTGATGGCTTTGTGCCAATCATATATCAT
Found at i:26387382 original size:22 final size:21
Alignment explanation
Indices: 26387357--26387421 Score: 58
Period size: 22 Copynumber: 3.0 Consensus size: 21
26387347 ATTATTGTAC
26387357 TTATGGCTTGTAGCCATTCTGT
1 TTATGGCTT-TAGCCATTCTGT
* * *
26387379 TTATAGCTTATAGCTATCCTGT
1 TTATGGCTT-TAGCCATTCTGT
* *
26387401 TTACGGCTCTTATCCATTCTG
1 TTATGGCT-TTAGCCATTCTG
26387422 GCTACTGGCA
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
22 32 0.97
23 1 0.03
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.45
Consensus pattern (21 bp):
TTATGGCTTTAGCCATTCTGT
Found at i:26391042 original size:5 final size:5
Alignment explanation
Indices: 26391032--26391097 Score: 114
Period size: 5 Copynumber: 13.0 Consensus size: 5
26391022 ATGTTGAATG
*
26391032 GATAT GATAT GGTAT GATAT GATAT GATAT GATAT GATAT GATAT GATAT
1 GATAT GATAT GATAT GATAT GATAT GATAT GATAT GATAT GATAT GATAT
26391082 GATAT GATAAT GATAT
1 GATAT GAT-AT GATAT
26391098 ATGTTTTGGT
Statistics
Matches: 58, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
5 53 0.91
6 5 0.09
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (5 bp):
GATAT
Found at i:26391270 original size:20 final size:20
Alignment explanation
Indices: 26391247--26391287 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
26391237 AATGAGTCTT
* *
26391247 TTTGCACTTCGGTGCCTTTG
1 TTTGCACTACGGTGCCATTG
26391267 TTTGCACTACGGTGCCATTG
1 TTTGCACTACGGTGCCATTG
26391287 T
1 T
26391288 ATAGCATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.10, C:0.24, G:0.24, T:0.41
Consensus pattern (20 bp):
TTTGCACTACGGTGCCATTG
Found at i:26392544 original size:14 final size:14
Alignment explanation
Indices: 26392525--26392552 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
26392515 AAATCAATAC
26392525 ATTGAGACTAATGT
1 ATTGAGACTAATGT
26392539 ATTGAGACTAATGT
1 ATTGAGACTAATGT
26392553 GTAGTTGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (14 bp):
ATTGAGACTAATGT
Found at i:26401867 original size:26 final size:26
Alignment explanation
Indices: 26401831--26401884 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
26401821 AGTTTACTAT
26401831 ATATAAACACATCATTTAATTAATCA
1 ATATAAACACATCATTTAATTAATCA
26401857 ATATAAACACATCATTTAATTAATCA
1 ATATAAACACATCATTTAATTAATCA
26401883 AT
1 AT
26401885 GTTATCATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (26 bp):
ATATAAACACATCATTTAATTAATCA
Found at i:26412319 original size:51 final size:50
Alignment explanation
Indices: 26412150--26412375 Score: 159
Period size: 51 Copynumber: 4.5 Consensus size: 50
26412140 ATTCGGTGGT
* * * * * * *
26412150 TTGCACATAGTACCACCCATGTGACCATTGTCATCTGATTCACGTAGTAGC
1 TTGCACATAGTACTACACACGTGACCATAGCCATC-GATACACATAGTAGC
* * * ** * * **
26412201 CTACACATAGTACTACACACGTGATCA-AGCTTTTCGGTTCATGTAGTAGC
1 TTGCACATAGTACTACACACGTGACCATAGC-CATCGATACACATAGTAGC
* * *
26412251 CTGTACATAGTACTACACACGTGACC-TAGGCCATCTGGTACACATAGTAGC
1 TTGCACATAGTACTACACACGTGACCATA-GCCATC-GATACACATAGTAGC
* * * * *
26412302 TTGCACATAGTTCTACACATGTGACCATTATCTATCGATACACGTAGTAGC
1 TTGCACATAGTACTACACACGTGACCA-TAGCCATCGATACACATAGTAGC
* *
26412353 TTGCTCTTAGTACTACACACGTG
1 TTGCACATAGTACTACACACGTG
26412376 TTCATAGGTA
Statistics
Matches: 137, Mismatches: 32, Indels: 12
0.76 0.18 0.07
Matches are distributed among these distances:
50 40 0.29
51 91 0.66
52 4 0.03
53 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (50 bp):
TTGCACATAGTACTACACACGTGACCATAGCCATCGATACACATAGTAGC
Found at i:26419800 original size:14 final size:14
Alignment explanation
Indices: 26419758--26419800 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
26419748 TGCAATTACT
26419758 CATAGTACTACACA
1 CATAGTACTACACA
* *
26419772 CGTAGTAGCT-TACA
1 CATAGTA-CTACACA
26419786 CATAGTACTACACA
1 CATAGTACTACACA
26419800 C
1 C
26419801 GTGACCAAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
13 2 0.09
14 19 0.83
15 2 0.09
ACGTcount: A:0.37, C:0.28, G:0.12, T:0.23
Consensus pattern (14 bp):
CATAGTACTACACA
Found at i:26419883 original size:51 final size:51
Alignment explanation
Indices: 26419769--26419905 Score: 152
Period size: 51 Copynumber: 2.7 Consensus size: 51
26419759 ATAGTACTAC
* * *
26419769 ACACGTAGTAGCTTACACATAGTACTACACACGTGACCAAGGCCATCTGGT
1 ACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAGGCCATCTGAT
* * * * * *
26419820 AAACATAATAGCCTGCACATAGTACTACACATGTGACCATTATG-TATC-GAT
1 ACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA--AGGCCATCTGAT
*
26419871 ACACGTAGTAGCCTGCACTTAGTACTACACACGTG
1 ACACGTAGTAGCCTGCACATAGTACTACACACGTG
26419906 TTCATAGGTA
Statistics
Matches: 70, Mismatches: 14, Indels: 4
0.80 0.16 0.05
Matches are distributed among these distances:
51 65 0.93
52 3 0.04
53 2 0.03
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.24
Consensus pattern (51 bp):
ACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAGGCCATCTGAT
Found at i:26423397 original size:36 final size:36
Alignment explanation
Indices: 26423328--26423398 Score: 97
Period size: 36 Copynumber: 2.0 Consensus size: 36
26423318 GGAGCGCATT
* * * *
26423328 AGTCATAATAGATCCGAAAGGCTACGGAGCTAAATC
1 AGTCAGAATAGATCCGAAAGACTACGAAACTAAATC
*
26423364 AGTCAGAATAGATCCGAAAGACTACTAAACTAAAT
1 AGTCAGAATAGATCCGAAAGACTACGAAACTAAAT
26423399 AGAGTTTACT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.44, C:0.18, G:0.18, T:0.20
Consensus pattern (36 bp):
AGTCAGAATAGATCCGAAAGACTACGAAACTAAATC
Found at i:26433667 original size:26 final size:26
Alignment explanation
Indices: 26433638--26433691 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
26433628 GGTTCTTCAC
26433638 TTAGCTTTCGATACACTTACTGTTCT
1 TTAGCTTTCGATACACTTACTGTTCT
*
26433664 TTAGCTTTCGATACACTTATTGTTCT
1 TTAGCTTTCGATACACTTACTGTTCT
26433690 TT
1 TT
26433692 TCCTCTTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.19, C:0.20, G:0.11, T:0.50
Consensus pattern (26 bp):
TTAGCTTTCGATACACTTACTGTTCT
Found at i:26433874 original size:40 final size:40
Alignment explanation
Indices: 26433830--26433968 Score: 172
Period size: 40 Copynumber: 3.5 Consensus size: 40
26433820 ATTAAAGTGA
* * * * *
26433830 AAACAAGGGAACATATGTGC-ATTCAAGGGTACCGAGGTAC
1 AAACAGGGGCACATAAGTGCAATT-AGGGGTACCGAAGTAC
* * *
26433870 AAACATGGGCACGTAAGTGCAATTAGGGGTACCAAAGTAC
1 AAACAGGGGCACATAAGTGCAATTAGGGGTACCGAAGTAC
* *
26433910 AAACAGGGGCACGTAAGTGCAATTAGGGGTACTGAAGTAC
1 AAACAGGGGCACATAAGTGCAATTAGGGGTACCGAAGTAC
26433950 AAACAGGGGCACATAAGTG
1 AAACAGGGGCACATAAGTG
26433969 TAATAATTCA
Statistics
Matches: 87, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
40 84 0.97
41 3 0.03
ACGTcount: A:0.37, C:0.17, G:0.29, T:0.17
Consensus pattern (40 bp):
AAACAGGGGCACATAAGTGCAATTAGGGGTACCGAAGTAC
Found at i:26433967 original size:20 final size:20
Alignment explanation
Indices: 26433866--26433967 Score: 73
Period size: 20 Copynumber: 5.1 Consensus size: 20
26433856 GGGTACCGAG
* *
26433866 GTACAAACATGGGCACGTAA
1 GTACAAACAGGGGCACATAA
* ** *
26433886 GTGCAATTAGGGGTACCA-AA
1 GTACAAACAGGGGCA-CATAA
*
26433906 GTACAAACAGGGGCACGTAA
1 GTACAAACAGGGGCACATAA
* ** *
26433926 GTGCAATTAGGGGTAC-TGAA
1 GTACAAACAGGGGCACAT-AA
26433946 GTACAAACAGGGGCACATAA
1 GTACAAACAGGGGCACATAA
26433966 GT
1 GT
26433968 GTAATAATTC
Statistics
Matches: 59, Mismatches: 19, Indels: 8
0.69 0.22 0.09
Matches are distributed among these distances:
19 2 0.03
20 55 0.93
21 2 0.03
ACGTcount: A:0.37, C:0.17, G:0.29, T:0.17
Consensus pattern (20 bp):
GTACAAACAGGGGCACATAA
Found at i:26437282 original size:41 final size:40
Alignment explanation
Indices: 26437204--26437284 Score: 99
Period size: 40 Copynumber: 2.0 Consensus size: 40
26437194 GTAATAGTTT
** * * *
26437204 GGGCCTTAGCCCATCTTAGTACAGTATCAAATATGCAGTA
1 GGGCCTTAGCCCATCACAATACAGTAGCAAACATGCAGTA
*
26437244 GGGCCTTAGCCCATCACAATATCAGTAGCAGACATGCAGTA
1 GGGCCTTAGCCCATCACAATA-CAGTAGCAAACATGCAGTA
26437285 TTCAGTAACA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 18 0.53
41 16 0.47
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (40 bp):
GGGCCTTAGCCCATCACAATACAGTAGCAAACATGCAGTA
Found at i:26444095 original size:27 final size:27
Alignment explanation
Indices: 26444055--26444110 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
26444045 CAGATCAGTA
* **
26444055 ACAGAACAATGTGGGCTTTAGCCTAAT
1 ACAGAACAAGGTGGGCCCTAGCCTAAT
26444082 ACAGAACAAGGTGGGCCCTAGCCTAAT
1 ACAGAACAAGGTGGGCCCTAGCCTAAT
26444109 AC
1 AC
26444111 CACATCAGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (27 bp):
ACAGAACAAGGTGGGCCCTAGCCTAAT
Found at i:26444632 original size:27 final size:27
Alignment explanation
Indices: 26444600--26444760 Score: 157
Period size: 27 Copynumber: 6.0 Consensus size: 27
26444590 TTCTCCAAAC
* *
26444600 TGAGGGTATTTCAATAATTTTGTAATT
1 TGAGGGTATTTCAGTAATTTTGTAAAT
* *
26444627 TAAGGGTACTTT-GGTAATTTTGTAAAT
1 TGAGGGTA-TTTCAGTAATTTTGTAAAT
*
26444654 TGAGGGTATTTC-GATAATTTTGCAAAT
1 TGAGGGTATTTCAG-TAATTTTGTAAAT
* * ** *
26444681 CGAGGGTACTTT-GGTAATTTTACAAGT
1 TGAGGGTA-TTTCAGTAATTTTGTAAAT
26444708 TGAGGGTATTTCAGTAATTTTGTAAAT
1 TGAGGGTATTTCAGTAATTTTGTAAAT
** *
26444735 CAAGGGTATTTTAGTAATTTTGTAAA
1 TGAGGGTATTTCAGTAATTTTGTAAA
26444761 CCAAAGTATT
Statistics
Matches: 111, Mismatches: 17, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
26 7 0.06
27 97 0.87
28 7 0.06
ACGTcount: A:0.30, C:0.06, G:0.22, T:0.43
Consensus pattern (27 bp):
TGAGGGTATTTCAGTAATTTTGTAAAT
Found at i:26444645 original size:54 final size:54
Alignment explanation
Indices: 26444595--26444755 Score: 214
Period size: 54 Copynumber: 3.0 Consensus size: 54
26444585 GATAATTCTC
* * * *
26444595 CAAACTGAGGGTATTTCAATAATTTTGTAATTTAAGGGTACTTTGGTAATTTTG
1 CAAATTGAGGGTATTTCAATAATTTTGTAAATCAAGGGTACTTTGGTAATTTTA
* * * *
26444649 TAAATTGAGGGTATTTCGATAATTTTGCAAATCGAGGGTACTTTGGTAATTTTA
1 CAAATTGAGGGTATTTCAATAATTTTGTAAATCAAGGGTACTTTGGTAATTTTA
* * * *
26444703 CAAGTTGAGGGTATTTCAGTAATTTTGTAAATCAAGGGTATTTTAGTAATTTT
1 CAAATTGAGGGTATTTCAATAATTTTGTAAATCAAGGGTACTTTGGTAATTTT
26444756 GTAAACCAAA
Statistics
Matches: 91, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 91 1.00
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (54 bp):
CAAATTGAGGGTATTTCAATAATTTTGTAAATCAAGGGTACTTTGGTAATTTTA
Found at i:26444686 original size:81 final size:81
Alignment explanation
Indices: 26444574--26444745 Score: 188
Period size: 81 Copynumber: 2.1 Consensus size: 81
26444564 TTTACCTTGT
* ** *
26444574 AAGGTTATTTCGATAATTCTCCAAACTGAGGGTA-TTTCAATAATTTTGTAATTTAAGGGTACTT
1 AAGGGTATTTCGATAATTCTCCAAACTGAGGGTACTTT-AATAATTTTACAAGTTAAGGGTA-TT
* *
26444638 T-GGTAATTTTGTAAATT
64 TCAGTAATTTTGTAAATC
* * * ** *
26444655 GAGGGTATTTCGATAATTTTGCAAA-TCGAGGGTACTTTGGTAATTTTACAAGTTGAGGGTATTT
1 AAGGGTATTTCGATAATTCTCCAAACT-GAGGGTACTTTAATAATTTTACAAGTTAAGGGTATTT
26444719 CAGTAATTTTGTAAATC
65 CAGTAATTTTGTAAATC
26444736 AAGGGTATTT
1 AAGGGTATTT
26444746 TAGTAATTTT
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
80 4 0.05
81 68 0.91
82 3 0.04
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (81 bp):
AAGGGTATTTCGATAATTCTCCAAACTGAGGGTACTTTAATAATTTTACAAGTTAAGGGTATTTC
AGTAATTTTGTAAATC
Found at i:26446844 original size:19 final size:18
Alignment explanation
Indices: 26446811--26446849 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
26446801 ATCGTGAATT
*
26446811 AAAAAGTTAGTCCTTTAA
1 AAAAAGTTAGTCCTTCAA
*
26446829 AAAAAGTTATTACCTTCAA
1 AAAAAGTTAGT-CCTTCAA
26446848 AA
1 AA
26446850 CCTTATTGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.49, C:0.13, G:0.08, T:0.31
Consensus pattern (18 bp):
AAAAAGTTAGTCCTTCAA
Found at i:26447439 original size:27 final size:27
Alignment explanation
Indices: 26447399--26447454 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
26447389 CAGTAACAGA
* * *
26447399 ACAGAACAATGTGGGCTTTAGCCTAAT
1 ACAGAACAAGGTGGGCCTTAGCCCAAT
26447426 ACAGAACAAGGTGGGCCTTAGCCCAAT
1 ACAGAACAAGGTGGGCCTTAGCCCAAT
26447453 AC
1 AC
26447455 CACATCAGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (27 bp):
ACAGAACAAGGTGGGCCTTAGCCCAAT
Found at i:26448040 original size:27 final size:26
Alignment explanation
Indices: 26447945--26448098 Score: 103
Period size: 27 Copynumber: 5.7 Consensus size: 26
26447935 CTCCAAACTG
*
26447945 AGGGTATTTT-GATAATTTTGCAATTC
1 AGGGTATTTTAG-TAATTTTGCAAATC
* * *
26447971 AGGGGTACTTTGGTAATTTTTCAAATC
1 A-GGGTATTTTAGTAATTTTGCAAATC
* ** * *
26447998 AGGGGTACTTCGGTAATTTTACAAGTC
1 A-GGGTATTTTAGTAATTTTGCAAATC
* *
26448025 GAGGGTATTTTAGTAATTTTGTAAACC
1 -AGGGTATTTTAGTAATTTTGCAAATC
* * *
26448052 AAAGGTATTTTAGTAATTTTGTAAACC
1 -AGGGTATTTTAGTAATTTTGCAAATC
* *
26448079 AAGAGTATTTCAGTAATTTT
1 -AGGGTATTTTAGTAATTTT
26448099 TTAAACCAAA
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
26 1 0.01
27 104 0.97
28 2 0.02
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (26 bp):
AGGGTATTTTAGTAATTTTGCAAATC
Found at i:26448068 original size:54 final size:53
Alignment explanation
Indices: 26448010--26448113 Score: 127
Period size: 54 Copynumber: 1.9 Consensus size: 53
26448000 GGGTACTTCG
** * * *
26448010 GTAATTTTACAAGTCGAGGGTATTTTAGTAATTTTGTAAACCAAAGGTATTTTA
1 GTAATTTTACAAACCAAGAGTATTTCAGTAATTTTGTAAACCAAA-GTATTTTA
** *
26448064 GTAATTTTGTAAACCAAGAGTATTTCAGTAATTTTTTAAACCAAAGTATT
1 GTAATTTTACAAACCAAGAGTATTTCAGTAATTTTGTAAACCAAAGTATT
26448114 CTAAATAGAG
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
53 5 0.12
54 37 0.88
ACGTcount: A:0.36, C:0.09, G:0.15, T:0.40
Consensus pattern (53 bp):
GTAATTTTACAAACCAAGAGTATTTCAGTAATTTTGTAAACCAAAGTATTTTA
Found at i:26448103 original size:27 final size:26
Alignment explanation
Indices: 26448029--26448113 Score: 134
Period size: 27 Copynumber: 3.2 Consensus size: 26
26448019 CAAGTCGAGG
26448029 GTATTTTAGTAATTTTGTAAACCAAA
1 GTATTTTAGTAATTTTGTAAACCAAA
26448055 GGTATTTTAGTAATTTTGTAAACCAAGA
1 -GTATTTTAGTAATTTTGTAAACCAA-A
* *
26448083 GTATTTCAGTAATTTTTTAAACCAAA
1 GTATTTTAGTAATTTTGTAAACCAAA
26448109 GTATT
1 GTATT
26448114 CTAAATAGAG
Statistics
Matches: 55, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
26 6 0.11
27 48 0.87
28 1 0.02
ACGTcount: A:0.36, C:0.08, G:0.13, T:0.42
Consensus pattern (26 bp):
GTATTTTAGTAATTTTGTAAACCAAA
Found at i:26454576 original size:19 final size:18
Alignment explanation
Indices: 26454552--26454589 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
26454542 CTATGACAAG
*
26454552 AAATATATAATATAAAAAT
1 AAATATA-AAAATAAAAAT
26454571 AAATATAAAAATAAAAAT
1 AAATATAAAAATAAAAAT
26454589 A
1 A
26454590 TGAAGGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (18 bp):
AAATATAAAAATAAAAAT
Found at i:26454577 original size:12 final size:12
Alignment explanation
Indices: 26454560--26454585 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
26454550 AGAAATATAT
26454560 AATATAAAAATA
1 AATATAAAAATA
26454572 AATATAAAAATA
1 AATATAAAAATA
26454584 AA
1 AA
26454586 AATATGAAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (12 bp):
AATATAAAAATA
Found at i:26457509 original size:35 final size:36
Alignment explanation
Indices: 26457464--26457578 Score: 214
Period size: 36 Copynumber: 3.2 Consensus size: 36
26457454 CTTCTTTCGT
*
26457464 TTCTTTTTCAATTTTCTTTTCGTTCTCACACTCGTC
1 TTCTTTTTCAATTTTCTTTTCGTTCTCACACTCATC
26457500 TTC-TTTTCAATTTTCTTTTCGTTCTCACACTCATC
1 TTCTTTTTCAATTTTCTTTTCGTTCTCACACTCATC
26457535 TTCTTTTTCAATTTTCTTTTCGTTCTCACACTCATC
1 TTCTTTTTCAATTTTCTTTTCGTTCTCACACTCATC
26457571 TTCTTTTT
1 TTCTTTTT
26457579 TTCATTTTTT
Statistics
Matches: 77, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
35 34 0.44
36 43 0.56
ACGTcount: A:0.12, C:0.27, G:0.03, T:0.57
Consensus pattern (36 bp):
TTCTTTTTCAATTTTCTTTTCGTTCTCACACTCATC
Found at i:26460153 original size:20 final size:20
Alignment explanation
Indices: 26460128--26460171 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
26460118 TTAAACGAGC
*
26460128 TGAATTAAGCCCATGTGAGT
1 TGAATTAAACCCATGTGAGT
**
26460148 TGAATTAAACTTATGTGAGT
1 TGAATTAAACCCATGTGAGT
26460168 TGAA
1 TGAA
26460172 CCGAGCTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.09, G:0.23, T:0.34
Consensus pattern (20 bp):
TGAATTAAACCCATGTGAGT
Found at i:26461549 original size:16 final size:17
Alignment explanation
Indices: 26461513--26461551 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
26461503 TCAAAAAGGG
* *
26461513 AAATAATAAAATAATAA
1 AAATTATAAAATAACAA
26461530 AAATTATAAAA-AACAA
1 AAATTATAAAATAACAA
26461546 AAATTA
1 AAATTA
26461552 AGTTGAAGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (17 bp):
AAATTATAAAATAACAA
Found at i:26467332 original size:40 final size:40
Alignment explanation
Indices: 26467301--26467537 Score: 134
Period size: 40 Copynumber: 5.9 Consensus size: 40
26467291 TGTACATTAT
* *
26467301 TGCCCCTGTTTGTACTTCGCTACCCCTAAATGCACATGCA
1 TGCCCCTATTTGTACTTCGCTACCCCTAAATGAACATGCA
* * * * *
26467341 TGCTCCTATTTGTACTTTGGTACCCCTAAATGAACATACG
1 TGCCCCTATTTGTACTTCGCTACCCCTAAATGAACATGCA
* * * * * * *
26467381 TGCTCCTATTTGTACTTCAG-TACCCTTGAATGCACGTACG
1 TGCCCCTATTTGTACTTC-GCTACCCCTAAATGAACATGCA
*** * * * * **
26467421 TGCTTTTGTTTGTACTTTGGTACCCCTGAATGAACATAAA
1 TGCCCCTATTTGTACTTCGCTACCCCTAAATGAACATGCA
* * * * * * * *
26467461 TGCTCCTGTTTATACTTCGGTACCCTTGAATGCATATGCA
1 TGCCCCTATTTGTACTTCGCTACCCCTAAATGAACATGCA
* * * * *
26467501 TGCTCCTATTTGTACTTTGGTACCCCTGAATGCACAT
1 TGCCCCTATTTGTACTTCGCTACCCCTAAATGAACAT
26467538 TCGTGCTTTG
Statistics
Matches: 160, Mismatches: 35, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 158 0.99
41 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.16, T:0.36
Consensus pattern (40 bp):
TGCCCCTATTTGTACTTCGCTACCCCTAAATGAACATGCA
Found at i:26467433 original size:80 final size:80
Alignment explanation
Indices: 26467329--26467544 Score: 288
Period size: 80 Copynumber: 2.7 Consensus size: 80
26467319 GCTACCCCTA
* * *
26467329 AATGCACATGCATGCTCCTATTTGTACTTTGGTACCCCTAAATGAACATACGTGCTCCTATTTGT
1 AATGCACATACATGCTCCTATTTGTACTTTGGTACCCCTGAATGAACATACGTGCTCCTATTTAT
26467394 ACTTCAGTACCCTTG
66 ACTTCAGTACCCTTG
* * ** * ** *
26467409 AATGCACGTACGTGCTTTTGTTTGTACTTTGGTACCCCTGAATGAACATAAATGCTCCTGTTTAT
1 AATGCACATACATGCTCCTATTTGTACTTTGGTACCCCTGAATGAACATACGTGCTCCTATTTAT
*
26467474 ACTTCGGTACCCTTG
66 ACTTCAGTACCCTTG
* * * *
26467489 AATGCATATGCATGCTCCTATTTGTACTTTGGTACCCCTGAATGCACATTCGTGCT
1 AATGCACATACATGCTCCTATTTGTACTTTGGTACCCCTGAATGAACATACGTGCT
26467545 TTGAATGAAC
Statistics
Matches: 113, Mismatches: 23, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
80 113 1.00
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (80 bp):
AATGCACATACATGCTCCTATTTGTACTTTGGTACCCCTGAATGAACATACGTGCTCCTATTTAT
ACTTCAGTACCCTTG
Found at i:26467524 original size:120 final size:120
Alignment explanation
Indices: 26467307--26467546 Score: 300
Period size: 120 Copynumber: 2.0 Consensus size: 120
26467297 TTATTGCCCC
* ** * *
26467307 TGTTTGTACTTCGCTACCCCTAAATGCACATGCATGCTCCTATTTGTACTTTGGTACCCCTAAAT
1 TGTTTGTACTTCGCTACCCCTAAATGAACATAAATGCTCCTATTTATACTTCGGTACCCCTAAAT
* * *
26467372 GAACATACGTGCTCCTATTTGTACTTCAGTACCCTTGAATGCACGTACGTGCTTT
66 GAACATACATGCTCCTATTTGTACTTCAGTACCCCTGAATGCACATACGTGCTTT
* * * * * *
26467427 TGTTTGTACTTTGGTACCCCTGAATGAACATAAATGCTCCTGTTTATACTTCGGTACCCTTGAAT
1 TGTTTGTACTTCGCTACCCCTAAATGAACATAAATGCTCCTATTTATACTTCGGTACCCCTAAAT
* * * ** *
26467492 GCATATGCATGCTCCTATTTGTACTTTGGTACCCCTGAATGCACATTCGTGCTTT
66 GAACATACATGCTCCTATTTGTACTTCAGTACCCCTGAATGCACATACGTGCTTT
26467547 GAATGAACTT
Statistics
Matches: 100, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
120 100 1.00
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (120 bp):
TGTTTGTACTTCGCTACCCCTAAATGAACATAAATGCTCCTATTTATACTTCGGTACCCCTAAAT
GAACATACATGCTCCTATTTGTACTTCAGTACCCCTGAATGCACATACGTGCTTT
Found at i:26487947 original size:26 final size:26
Alignment explanation
Indices: 26487918--26488094 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 26
26487908 ATATTGAGCC
* *
26487918 CGCACACTCAGTGCTA-TACATCAACT
1 CGCACACTTAGTGCTACTA-ATCAAAT
*
26487944 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAC-TAATCAAAT
* * *
26487971 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTAC-TAATCA-AAT
** ** *
26487999 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTAC-TAATCAAAT
* **
26488026 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-C-TAATCAAAT
* * *
26488053 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTAC-TAATCAAAT
26488080 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26488095 GTACAATTTA
Statistics
Matches: 124, Mismatches: 22, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
26 14 0.11
27 85 0.69
28 25 0.20
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
CGCACACTTAGTGCTACTAATCAAAT
Found at i:26487975 original size:27 final size:27
Alignment explanation
Indices: 26487938--26488093 Score: 161
Period size: 27 Copynumber: 5.7 Consensus size: 27
26487928 GTGCTATACA
* * *
26487938 TCAACTCGCACACTTAGTGCCACGTAA
1 TCAAATCGCACACTTAGTGCCACATAG
*
26487965 TCAAATCGCACACTTAGTGCTACATAG
1 TCAAATCGCACACTTAGTGCCACATAG
* * * *
26487992 TTAGACTCGCACACTTAGTGCCGCATGG
1 TCA-AATCGCACACTTAGTGCCACATAG
* *
26488020 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAAATCGCACACTTAGTGCCA-CATAG
** *
26488047 TCATTTCGCACACTTAGTGCAACATAG
1 TCAAATCGCACACTTAGTGCCACATAG
*
26488074 TCGAATCGCACACTTAGTGC
1 TCAAATCGCACACTTAGTGC
26488094 TGTACAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
26 1 0.01
27 82 0.77
28 23 0.22
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (27 bp):
TCAAATCGCACACTTAGTGCCACATAG
Found at i:26488010 original size:55 final size:55
Alignment explanation
Indices: 26487918--26488094 Score: 202
Period size: 55 Copynumber: 3.3 Consensus size: 55
26487908 ATATTGAGCC
* * * *
26487918 CGCACACTCAGTGCTAT-ACA-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
26487971 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
26488026 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
26488080 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26488095 GTACAATTTA
Statistics
Matches: 103, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
53 17 0.17
54 41 0.40
55 45 0.44
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:26488037 original size:82 final size:81
Alignment explanation
Indices: 26487938--26488093 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
26487928 GTGCTATACA
* * *
26487938 TCAACTCGCACACTTAGTGCCA-CGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGC
1 TCAACTCGCACACTTAGTG-CATCATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGC
26488002 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * ** *
26488020 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCAC
1 TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
26488085 ACTTAGTGC
66 ACTTAGTGC
26488094 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26499668 original size:78 final size:78
Alignment explanation
Indices: 26499560--26499725 Score: 260
Period size: 78 Copynumber: 2.1 Consensus size: 78
26499550 TGCTTAATTC
** * *
26499560 TAAATTTAGTCCCGAATTCAAGACTAATTTTAATACTCGTATTTAACCTCAAATTTTTATACTAA
1 TAAATTTAGTCCCGAAACCAAGACTAATTTTAATACCCATATTTAACCTCAAATTTTTATACTAA
26499625 TTTTACTCTAAGA
66 TTTTACTCTAAGA
* * *
26499638 TAAATTTAGTCCCTAAACCAATACTGATTTTAATACCCATATTTAACCTCAAATTTTTATACTAA
1 TAAATTTAGTCCCGAAACCAAGACTAATTTTAATACCCATATTTAACCTCAAATTTTTATACTAA
*
26499703 TTTTACTCTAAGC
66 TTTTACTCTAAGA
26499716 TAAATTTAGT
1 TAAATTTAGT
26499726 TCTCTATTTT
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
78 80 1.00
ACGTcount: A:0.36, C:0.17, G:0.05, T:0.41
Consensus pattern (78 bp):
TAAATTTAGTCCCGAAACCAAGACTAATTTTAATACCCATATTTAACCTCAAATTTTTATACTAA
TTTTACTCTAAGA
Found at i:26500060 original size:14 final size:14
Alignment explanation
Indices: 26500037--26500066 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
26500027 CGTCGGTCTC
26500037 TTCTTGTTCTTTCT
1 TTCTTGTTCTTTCT
*
26500051 TTCTTTTTCTTTCT
1 TTCTTGTTCTTTCT
26500065 TT
1 TT
26500067 TAATTTTTGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.00, C:0.20, G:0.03, T:0.77
Consensus pattern (14 bp):
TTCTTGTTCTTTCT
Found at i:26501838 original size:17 final size:17
Alignment explanation
Indices: 26501816--26501848 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
26501806 GTTAGTGTAC
*
26501816 ATTGTCGTTGCATTTTT
1 ATTGTCATTGCATTTTT
26501833 ATTGTCATTGCATTTT
1 ATTGTCATTGCATTTT
26501849 AATGTTAGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.12, G:0.15, T:0.58
Consensus pattern (17 bp):
ATTGTCATTGCATTTTT
Found at i:26502830 original size:17 final size:16
Alignment explanation
Indices: 26502810--26502843 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
26502800 CGATTCAGCC
26502810 CAAAATTCATAATTTTG
1 CAAAATT-ATAATTTTG
*
26502827 CAAAATTGTAATTTTG
1 CAAAATTATAATTTTG
26502843 C
1 C
26502844 CACTACTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.41
Consensus pattern (16 bp):
CAAAATTATAATTTTG
Found at i:26503383 original size:20 final size:20
Alignment explanation
Indices: 26503352--26503406 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
26503342 TCCATTCCAA
*
26503352 TCCATGTCACATATTGCATT
1 TCCATTTCACATATTGCATT
* *
26503372 TCCATTTTACATATTGTATT
1 TCCATTTCACATATTGCATT
26503392 TCCATTTCACATATT
1 TCCATTTCACATATT
26503407 TAAATTTCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.25, C:0.22, G:0.05, T:0.47
Consensus pattern (20 bp):
TCCATTTCACATATTGCATT
Found at i:26503754 original size:16 final size:16
Alignment explanation
Indices: 26503733--26503784 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
26503723 CCAATCTCAT
26503733 ATATATACATTATCAC
1 ATATATACATTATCAC
* *
26503749 ATATATTCAAT-TCA-
1 ATATATACATTATCAC
26503763 ATAT-TCACATTATCAC
1 ATATAT-ACATTATCAC
26503779 ATATAT
1 ATATAT
26503785 TTAAATTAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 7
0.72 0.10 0.18
Matches are distributed among these distances:
13 1 0.04
14 7 0.25
15 6 0.21
16 13 0.46
17 1 0.04
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.40
Consensus pattern (16 bp):
ATATATACATTATCAC
Found at i:26507162 original size:25 final size:25
Alignment explanation
Indices: 26507108--26507177 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 25
26507098 ACATTTCACC
* *
26507108 CACAACTCGTGAGAGTATACCAATT
1 CACAGCTCGTGAGAGCATACCAATT
* **
26507133 TACAGCTCGTGAGAGCATACTGATT
1 CACAGCTCGTGAGAGCATACCAATT
* *
26507158 CACAGCTCATGTGAGCATAC
1 CACAGCTCGTGAGAGCATAC
26507178 AGGTACATGA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.24
Consensus pattern (25 bp):
CACAGCTCGTGAGAGCATACCAATT
Found at i:26513543 original size:25 final size:25
Alignment explanation
Indices: 26513480--26513527 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
26513470 GGACACACCA
26513480 CAGCTTGTATGAGCTTACCGATTTC
1 CAGCTTGTATGAGCTTACCGATTTC
*
26513505 CAGCTTGTGA-GAGCTTATCGATT
1 CAGCTTGT-ATGAGCTTACCGATT
26513528 CATAGCTCGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 20 0.95
26 1 0.05
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.35
Consensus pattern (25 bp):
CAGCTTGTATGAGCTTACCGATTTC
Found at i:26514671 original size:15 final size:15
Alignment explanation
Indices: 26514651--26514687 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
26514641 AGAGACACGG
26514651 GTGTGTGTCTCAACC
1 GTGTGTGTCTCAACC
*
26514666 GTGTGTGTCTCAGCC
1 GTGTGTGTCTCAACC
26514681 GTGTGTG
1 GTGTGTG
26514688 ACACACAGCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.08, C:0.22, G:0.35, T:0.35
Consensus pattern (15 bp):
GTGTGTGTCTCAACC
Found at i:26526464 original size:45 final size:44
Alignment explanation
Indices: 26526400--26526588 Score: 195
Period size: 45 Copynumber: 4.2 Consensus size: 44
26526390 CTACTACGTG
* *
26526400 CACCGGGTAGCATTGATTATAATGGTGGTTGTTGTATGCTGATTC
1 CACCGGGTATCATTGATTATAA-GGTGGTTGTTGTGTGCTGATTC
*
26526445 CACCGGGTATCATTGATTATAAAGGTGGTTGTTGTGTGTTGATTC
1 CACCGGGTATCATTGATTAT-AAGGTGGTTGTTGTGTGCTGATTC
* * * *
26526490 CACCGGGTACCATTGATTATGAAGGTGGCTT-CTATGTGCTGGTTC
1 CACCGGGTATCATTGATTAT-AAGGTGG-TTGTTGTGTGCTGATTC
** * * *
26526535 CACCTAGTATCATTGACTATCAGGGTGG-TGCTGTGTGCTGA-TC
1 CACCGGGTATCATTGATTAT-AAGGTGGTTGTTGTGTGCTGATTC
*
26526578 CACCGTGTATC
1 CACCGGGTATC
26526589 TGTTATTATT
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
43 12 0.10
44 9 0.07
45 97 0.80
46 4 0.03
ACGTcount: A:0.19, C:0.17, G:0.28, T:0.35
Consensus pattern (44 bp):
CACCGGGTATCATTGATTATAAGGTGGTTGTTGTGTGCTGATTC
Found at i:26529215 original size:76 final size:76
Alignment explanation
Indices: 26529120--26529317 Score: 208
Period size: 76 Copynumber: 2.6 Consensus size: 76
26529110 GAAATTAGGG
* * *
26529120 ATGTATAT-ATTAGATTCGAATATGTATGAGTATACAAGTATAAGTTCATGTTTTGATTATAAG-
1 ATGTATATGA-TAGATTCGAATATGTATGAGTATACATGTATAAGTTCATGTATTGA-AATAAGA
26529183 TATGTAA-TTATAT
64 TATG-AATTTATAT
* * * * * * *
26529196 ATGTATATGATAGACTCGAATATATATAAATATACATGTATAAATTCTTGTATTGAAATTAGATA
1 ATGTATATGATAGATTCGAATATGTATGAGTATACATGTATAAGTTCATGTATTGAAATAAGATA
26529261 TGAATTTATAT
66 TGAATTTATAT
* *
26529272 ATGTATATG-TGAGGTTCGAATGTGTATG-GTTATACATGTATAAGTT
1 ATGTATATGAT-AGATTCGAATATGTATGAG-TATACATGTATAAGTT
26529318 TTATATTGAA
Statistics
Matches: 100, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
75 7 0.07
76 92 0.92
77 1 0.01
ACGTcount: A:0.37, C:0.05, G:0.17, T:0.42
Consensus pattern (76 bp):
ATGTATATGATAGATTCGAATATGTATGAGTATACATGTATAAGTTCATGTATTGAAATAAGATA
TGAATTTATAT
Found at i:26529772 original size:41 final size:41
Alignment explanation
Indices: 26529710--26529903 Score: 316
Period size: 41 Copynumber: 4.7 Consensus size: 41
26529700 TAGGCTTAGC
26529710 GCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAA
1 GCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAA
* * *
26529751 GCTTAGCAAGCTAAGTACCGGTGATCTGAATCAGGCTTATAA
1 GCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGG-TTATAA
* * *
26529793 GCCTAGCAGGCTAAGTGCCAGTGAACTGAATTAGGTTATAA
1 GCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAA
26529834 GCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAA
1 GCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAA
26529875 GCCTAGCAGGCTAAGTGCCGGTGAATCTG
1 GCCTAGCAGGCTAAGTGCCGGTG-ATCTG
26529904 TTTAAATTAA
Statistics
Matches: 139, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
41 99 0.71
42 40 0.29
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (41 bp):
GCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAA
Found at i:26529849 original size:83 final size:82
Alignment explanation
Indices: 26529710--26529899 Score: 317
Period size: 83 Copynumber: 2.3 Consensus size: 82
26529700 TAGGCTTAGC
* *
26529710 GCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAGCTTAGCAAGCTAAGTACCGGTGA
1 GCCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGTTATAAGCCTAGCAAGCTAAGTACCGGTGA
26529775 TCTGAATCAGGCTTATAA
66 TCTGAATCAGG-TTATAA
* * * *
26529793 GCCTAGCAGGCTAAGTGCCAGTGAACTGAATTAGGTTATAAGCCTAGCAGGCTAAGTGCCGGTGA
1 GCCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGTTATAAGCCTAGCAAGCTAAGTACCGGTGA
26529858 TCTGAATCAGGTTATAA
66 TCTGAATCAGGTTATAA
26529875 GCCTAGCAGGCTAAGTGCCGGTGAA
1 GCCTAGCAGGCTAAGTGCCGGTGAA
26529900 TCTGTTTAAA
Statistics
Matches: 100, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
82 30 0.30
83 70 0.70
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (82 bp):
GCCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGTTATAAGCCTAGCAAGCTAAGTACCGGTGA
TCTGAATCAGGTTATAA
Found at i:26530141 original size:34 final size:34
Alignment explanation
Indices: 26530072--26530145 Score: 89
Period size: 34 Copynumber: 2.1 Consensus size: 34
26530062 TTGTTGGATA
*
26530072 TATATATGTATGCATTCGGCATATGTGGATTATAAG
1 TATATATG-ATGCATTCGGCACATGT-GATTATAAG
26530108 TATATATG-TGCATTCGGCACATGT-ACTTGATAAG
1 TATATATGATGCATTCGGCACATGTGA-TT-ATAAG
26530142 TATA
1 TATA
26530146 AATATATGCT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
32 1 0.03
33 2 0.06
34 24 0.69
36 8 0.23
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (34 bp):
TATATATGATGCATTCGGCACATGTGATTATAAG
Found at i:26533021 original size:29 final size:29
Alignment explanation
Indices: 26532972--26533029 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
26532962 ATGCCGAGAG
*
26532972 AGCAGATCACCTAAGACTTTTTTCAAACT
1 AGCAGATCACCTAAGAATTTTTTCAAACT
*
26533001 AGCAGATCACCTGAGAATTTTTTCAAACT
1 AGCAGATCACCTAAGAATTTTTTCAAACT
26533030 GAGTTCCAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.31
Consensus pattern (29 bp):
AGCAGATCACCTAAGAATTTTTTCAAACT
Found at i:26535763 original size:40 final size:40
Alignment explanation
Indices: 26535673--26535766 Score: 118
Period size: 40 Copynumber: 2.4 Consensus size: 40
26535663 GCGTTTGGAT
* * *
26535673 AAAAATGCCACTAAAAATCGAGCATTAGCGGCGCTTTTCG
1 AAAAATGCCGCTAAAAATCGAACATTAGCGGCGCTTATCG
* *
26535713 AAAAACGCCGCTAAAGATCGAACATTAGCGGCGCGTTAT-G
1 AAAAATGCCGCTAAAAATCGAACATTAGCGGCGC-TTATCG
*
26535753 GAAAATGCCGCTAA
1 AAAAATGCCGCTAA
26535767 GAATAAGCAT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
40 43 0.93
41 3 0.07
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.19
Consensus pattern (40 bp):
AAAAATGCCGCTAAAAATCGAACATTAGCGGCGCTTATCG
Found at i:26535910 original size:41 final size:41
Alignment explanation
Indices: 26535847--26536179 Score: 285
Period size: 41 Copynumber: 8.1 Consensus size: 41
26535837 CTTTCGGGGT
*
26535847 TTTAGCGGCGTTTTTGATAAAGCGCCGCTAATGCTCAGGGC
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGC
* ** * *
26535888 TTTAGCGGCGTTTTTGGGAAAGCATCGCTAATGCTTAAGGC
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGC
* *
26535929 TTTAGCGGCGTTTTTGGGAAAGCCCCGCTAATGCTCAGGGC
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGC
* * * *
26535970 TTTAGCGGCTTTTTTTGAGAAAGCGGCGCTAATGTTCAGGGA
1 TTTAGCGGC-GTTTTTGAGAAAGCGCCGCTAATGCTCAGGGC
* * * * * *
26536012 TTTAGCTGCATTTTTTATG-AGGCACCGCTAATGCTCAAGGC
1 TTTAGCGGCGTTTTTGA-GAAAGCGCCGCTAATGCTCAGGGC
* * * * ** * *
26536053 TTTAGCGGCATTTCCTAAAAAAATGCCACAAATGCTCAGGGC
1 TTTAGCGGCGTTT-TTGAGAAAGCGCCGCTAATGCTCAGGGC
* * * ****
26536095 TTTAGCGGCGTTTTTGTGTAAGCACCGCTAATGCTC-TCTT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGC
* * *
26536135 TTTAGCGGCGTTTTCT-AAAAAGCGCCGCTAATGCTTAGGGA
1 TTTAGCGGCGTTTT-TGAGAAAGCGCCGCTAATGCTCAGGGC
26536176 TTTA
1 TTTA
26536180 AAATAATTTA
Statistics
Matches: 226, Mismatches: 60, Indels: 12
0.76 0.20 0.04
Matches are distributed among these distances:
40 29 0.13
41 133 0.59
42 64 0.28
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGC
Found at i:26536040 original size:83 final size:82
Alignment explanation
Indices: 26535847--26536061 Score: 238
Period size: 83 Copynumber: 2.6 Consensus size: 82
26535837 CTTTCGGGGT
* * *
26535847 TTTAGCGGCGTTTTT-GATAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGGGAAAGC
1 TTTAGCGGCGTTTTTAG-GAAAGCACCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGAGAAAGC
* *
26535911 ATCGCTAATGCTTAAGGC
65 AGCGCTAATGCTTAAGGA
* * *
26535929 TTTAGCGGCGTTTTTGGGAAAGCCCCGCTAATGCTCAGGGCTTTAGCGGCTTTTTTTGAGAAAGC
1 TTTAGCGGCGTTTTTAGGAAAGCACCGCTAATGCTCAGGGCTTTAGCGGC-GTTTTTGAGAAAGC
* *
26535994 GGCGCTAATG-TTCAGGGA
65 AGCGCTAATGCTT-AAGGA
* * * * *
26536012 TTTAGCTGCATTTTTTATG-AGGCACCGCTAATGCTCAAGGCTTTAGCGGC
1 TTTAGCGGC-GTTTTTAGGAAAGCACCGCTAATGCTCAGGGCTTTAGCGGC
26536062 ATTTCCTAAA
Statistics
Matches: 114, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
82 48 0.42
83 60 0.53
84 6 0.05
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.31
Consensus pattern (82 bp):
TTTAGCGGCGTTTTTAGGAAAGCACCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGAGAAAGCA
GCGCTAATGCTTAAGGA
Found at i:26536109 original size:124 final size:123
Alignment explanation
Indices: 26535847--26536169 Score: 310
Period size: 124 Copynumber: 2.6 Consensus size: 123
26535837 CTTTCGGGGT
* * *
26535847 TTTAGCGGCGTTTTTGATAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGGGAAAGCA
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGATTTAGCGGCGTTTTTAGGAAAGCA
* * * * *** * * *
26535912 TCGCTAATGCTTAAGGCTTTAGCGGCGTTTTTGGGAAAGCCCCGCTAATGCTCAGGGC
66 CCGCTAATGCTCAAGGCTTTAGCGGCATTTCTAAAAAAACCCCACAAATGCTCAGGGC
* * * * * * *
26535970 TTTAGCGGCTTTTTTTGAGAAAGCGGCGCTAATGTTCAGGGATTTAGCTGCATTTTTTATG-AGG
1 TTTAGCGGC-GTTTTTGAGAAAGCGCCGCTAATGCTCAGGGATTTAGCGGC-GTTTTTAGGAAAG
**
26536034 CACCGCTAATGCTCAAGGCTTTAGCGGCATTTCCTAAAAAAATGCCACAAATGCTCAGGGC
64 CACCGCTAATGCTCAAGGCTTTAGCGGCATTT-CTAAAAAAACCCCACAAATGCTCAGGGC
* * * **** *
26536095 TTTAGCGGCGTTTTTGTGTAAGCACCGCTAATGCTC-TCTTTTTAGCGGCGTTTTCTA-AAAAGC
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGATTTAGCGGCGTTTT-TAGGAAAGC
*
26536158 GCCGCTAATGCT
65 ACCGCTAATGCT
26536170 TAGGGATTTA
Statistics
Matches: 158, Mismatches: 37, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
122 4 0.03
123 33 0.21
124 87 0.55
125 34 0.22
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (123 bp):
TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGATTTAGCGGCGTTTTTAGGAAAGCA
CCGCTAATGCTCAAGGCTTTAGCGGCATTTCTAAAAAAACCCCACAAATGCTCAGGGC
Found at i:26541608 original size:43 final size:44
Alignment explanation
Indices: 26541507--26541812 Score: 353
Period size: 43 Copynumber: 7.1 Consensus size: 44
26541497 AGAACGTACT
* * *
26541507 TTTAGCGGCGTTTGT-GATAAAAGCGCC-GCTAAAAATCATG-TC
1 TTTAGTGGCGTTTGTGGGT-AAAGCGCCAGCTAAAGATCATGTTC
*
26541549 TTTAGTGGCGTTTGTGGGTAAAGC-ACAGCTAAAGATCATGTTC
1 TTTAGTGGCGTTTGTGGGTAAAGCGCCAGCTAAAGATCATGTTC
* * * *
26541592 TTTAGTGGCATTTGTGGGCAAAGTGCC-TCTAAAGATCATGTTC
1 TTTAGTGGCGTTTGTGGGTAAAGCGCCAGCTAAAGATCATGTTC
* *
26541635 TTTAGCGGCGTTTATGGGTAAAGCGCC-GCTAAAGATCATGTTC
1 TTTAGTGGCGTTTGTGGGTAAAGCGCCAGCTAAAGATCATGTTC
* * * *
26541678 TTTAGTGGCGTTT-TTGATAAAAGCGCCA-TTAAAGCTCATGTTC
1 TTTAGTGGCGTTTGTGGGT-AAAGCGCCAGCTAAAGATCATGTTC
* * *
26541721 TTTAGCGACGTTTGTGGGTAAAGCGCCA-CTAAAGGTCATGTTC
1 TTTAGTGGCGTTTGTGGGTAAAGCGCCAGCTAAAGATCATGTTC
* *
26541764 TTTAGCGGCGTTTGTGGGTAAAGCGTC-GCTAAAGATCATGTTC
1 TTTAGTGGCGTTTGTGGGTAAAGCGCCAGCTAAAGATCATGTTC
26541807 TTTAGT
1 TTTAGT
26541813 CGTGTTTTTT
Statistics
Matches: 226, Mismatches: 30, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
41 1 0.00
42 34 0.15
43 187 0.83
44 4 0.02
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (44 bp):
TTTAGTGGCGTTTGTGGGTAAAGCGCCAGCTAAAGATCATGTTC
Found at i:26541736 original size:129 final size:128
Alignment explanation
Indices: 26541507--26541821 Score: 411
Period size: 129 Copynumber: 2.5 Consensus size: 128
26541497 AGAACGTACT
* * * *
26541507 TTTAGCGGCGTTTGT-GATAAAAGCGCCGCTAAAAATCATG-TCTTTAGTGGCGTTTGTGGGTAA
1 TTTAGCGGCGTTTGTGGGT-AAAGCGCCGCTAAAGATCATGTTCTTTAGTGGCGTTT-TTGATAA
* * * *
26541570 AGCACAGCTAAAGATCATGTTCTTTAGTGGCATTTGTGGGCAAAGTGCCTCTAAAGATCATGTTC
64 AGCACAGCTAAAGATCATGTTCTTTAGCGACATTTGTGGGCAAAGCGCCACTAAAGATCATGTTC
*
26541635 TTTAGCGGCGTTTATGGGTAAAGCGCCGCTAAAGATCATGTTCTTTAGTGGCGTTTTTGATAAAA
1 TTTAGCGGCGTTTGTGGGTAAAGCGCCGCTAAAGATCATGTTCTTTAGTGGCGTTTTTGAT-AAA
* * * * * *
26541700 GCGCCA-TTAAAGCTCATGTTCTTTAGCGACGTTTGTGGGTAAAGCGCCACTAAAGGTCATGTTC
65 GC-ACAGCTAAAGATCATGTTCTTTAGCGACATTTGTGGGCAAAGCGCCACTAAAGATCATGTTC
* * *
26541764 TTTAGCGGCGTTTGTGGGTAAAGCGTCGCTAAAGATCATGTTCTTTAGTCGTGTTTTT
1 TTTAGCGGCGTTTGTGGGTAAAGCGCCGCTAAAGATCATGTTCTTTAGTGGCGTTTTT
26541822 TCACATAAAC
Statistics
Matches: 164, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
128 37 0.23
129 125 0.76
130 2 0.01
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (128 bp):
TTTAGCGGCGTTTGTGGGTAAAGCGCCGCTAAAGATCATGTTCTTTAGTGGCGTTTTTGATAAAG
CACAGCTAAAGATCATGTTCTTTAGCGACATTTGTGGGCAAAGCGCCACTAAAGATCATGTTC
Found at i:26545076 original size:25 final size:25
Alignment explanation
Indices: 26545005--26545084 Score: 76
Period size: 25 Copynumber: 3.2 Consensus size: 25
26544995 GACACACCAC
**
26545005 AGCTCGTATGAGCTTACCAATTTCT
1 AGCTCGTATGAGCTTACTGATTTCT
* *
26545030 AACTTGTGA-GAGCTTA-TCGA-TTCT
1 AGCTCGT-ATGAGCTTACT-GATTTCT
26545054 CAGCTCGTATGAGCTTACTGATTTCT
1 -AGCTCGTATGAGCTTACTGATTTCT
26545080 AGCTC
1 AGCTC
26545085 AACAGAGCAT
Statistics
Matches: 43, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
24 5 0.12
25 32 0.74
26 6 0.14
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.36
Consensus pattern (25 bp):
AGCTCGTATGAGCTTACTGATTTCT
Found at i:26545109 original size:50 final size:50
Alignment explanation
Indices: 26545004--26545102 Score: 117
Period size: 50 Copynumber: 2.0 Consensus size: 50
26544994 GGACACACCA
**** * *
26545004 CAGCTCGTATGAGCTTACCAATTTCTAACTTGTGAGAGCTTATCGATTCT
1 CAGCTCGTATGAGCTTACCAATTTCTAACTCAACAGAGCATACCGATTCT
** *
26545054 CAGCTCGTATGAGCTTACTGATTTCTAGCTCAACAGAGCATACCGATTC
1 CAGCTCGTATGAGCTTACCAATTTCTAACTCAACAGAGCATACCGATTC
26545103 ATAGCTCTTA
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 40 1.00
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.32
Consensus pattern (50 bp):
CAGCTCGTATGAGCTTACCAATTTCTAACTCAACAGAGCATACCGATTCT
Found at i:26549145 original size:25 final size:25
Alignment explanation
Indices: 26549098--26549157 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
26549088 CGTTCCGACC
**
26549098 CACAGCTCGTGAGAGCTTACCGATT
1 CACAGCTCGTGAGAGCAGACCGATT
* * *
26549123 TACAGCTCGTGAGGGCAGGCCGATT
1 CACAGCTCGTGAGAGCAGACCGATT
*
26549148 CACAACTCGT
1 CACAGCTCGT
26549158 ATGAGCATAC
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (25 bp):
CACAGCTCGTGAGAGCAGACCGATT
Found at i:26551098 original size:27 final size:27
Alignment explanation
Indices: 26551067--26551244 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26551057 TAAATTGTAC
26551067 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
26551094 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26551120 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
26551148 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
26551176 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26551203 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
26551230 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26551245 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:26551181 original size:82 final size:81
Alignment explanation
Indices: 26551068--26551223 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26551058 AAATTGTACA
* *
26551068 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
26551132 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
26551149 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
26551214 TGCGAGTTGA
65 TGCGAATTGA
26551224 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26551235 original size:82 final size:81
Alignment explanation
Indices: 26551064--26551244 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
26551054 GATTAAATTG
* *
26551064 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26551129 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
26551145 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
26551209 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
26551227 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26551245 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26555599 original size:26 final size:26
Alignment explanation
Indices: 26555570--26555637 Score: 127
Period size: 26 Copynumber: 2.6 Consensus size: 26
26555560 CATTTTGACC
*
26555570 CACAGCTCATGTGAGCAAGCCCATTT
1 CACAGCTCGTGTGAGCAAGCCCATTT
26555596 CACAGCTCGTGTGAGCAAGCCCATTT
1 CACAGCTCGTGTGAGCAAGCCCATTT
26555622 CACAGCTCGTGTGAGC
1 CACAGCTCGTGTGAGC
26555638 CATGCTGTAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.24, C:0.31, G:0.24, T:0.22
Consensus pattern (26 bp):
CACAGCTCGTGTGAGCAAGCCCATTT
Found at i:26556851 original size:17 final size:17
Alignment explanation
Indices: 26556829--26556866 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
26556819 GTCTCAGCCA
26556829 TGTGAGGCACACGACCG
1 TGTGAGGCACACGACCG
26556846 TGTGAGGCACACGACCG
1 TGTGAGGCACACGACCG
26556863 TGTG
1 TGTG
26556867 TCCCCTACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.21, C:0.26, G:0.37, T:0.16
Consensus pattern (17 bp):
TGTGAGGCACACGACCG
Found at i:26557598 original size:19 final size:19
Alignment explanation
Indices: 26557574--26557634 Score: 59
Period size: 19 Copynumber: 3.1 Consensus size: 19
26557564 ATTTATTTAT
26557574 TTATTAGAATATTAAAAAA
1 TTATTAGAATATTAAAAAA
* * * *
26557593 TTATTATAAAATTCAAATA
1 TTATTAGAATATTAAAAAA
*
26557612 TTAATTAGAATAATAATAAAA
1 TT-ATTAGAATATTAA-AAAA
26557633 TT
1 TT
26557635 TAATATTTAA
Statistics
Matches: 31, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
19 17 0.55
20 9 0.29
21 5 0.16
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.39
Consensus pattern (19 bp):
TTATTAGAATATTAAAAAA
Found at i:26564262 original size:25 final size:25
Alignment explanation
Indices: 26564228--26564278 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
26564218 TTGTTTATTC
26564228 ATCCCTTTGTAATCCCGATCAAGTG
1 ATCCCTTTGTAATCCCGATCAAGTG
*
26564253 ATCCCTTTGTAATCTCGATCAAGTG
1 ATCCCTTTGTAATCCCGATCAAGTG
26564278 A
1 A
26564279 GTTCCATACT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.33
Consensus pattern (25 bp):
ATCCCTTTGTAATCCCGATCAAGTG
Found at i:26569969 original size:13 final size:13
Alignment explanation
Indices: 26569951--26569978 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
26569941 GCATTATGGT
26569951 TATTCTTCAAGGC
1 TATTCTTCAAGGC
26569964 TATTCTTCAAGGC
1 TATTCTTCAAGGC
26569977 TA
1 TA
26569979 AGTATGCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.21, G:0.14, T:0.39
Consensus pattern (13 bp):
TATTCTTCAAGGC
Found at i:26579404 original size:21 final size:21
Alignment explanation
Indices: 26579375--26579424 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
26579365 TAGAATAATT
26579375 TTTTATATTTTTGGAA-TTATAA
1 TTTT-TATTTTT-GAAGTTATAA
* *
26579397 TTTTTATTTTTTAAGTTTTAA
1 TTTTTATTTTTGAAGTTATAA
26579418 TTTTTAT
1 TTTTTAT
26579425 AATATTTCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 2 0.08
21 19 0.76
22 4 0.16
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (21 bp):
TTTTTATTTTTGAAGTTATAA
Found at i:26579785 original size:17 final size:17
Alignment explanation
Indices: 26579763--26579810 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
26579753 AACTATTACC
26579763 TAATATTATAATAT-AAA
1 TAATA-TATAATATCAAA
*
26579780 TAATATATAATTTCAAA
1 TAATATATAATATCAAA
*
26579797 TAATTACATAATAT
1 TAA-TATATAATAT
26579811 GTTTTTATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
16 7 0.27
17 11 0.42
18 8 0.31
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (17 bp):
TAATATATAATATCAAA
Found at i:26580205 original size:3 final size:3
Alignment explanation
Indices: 26580197--26580235 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
26580187 GCCCTTTTGT
26580197 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
26580236 AATTGGTGAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:26584021 original size:23 final size:23
Alignment explanation
Indices: 26583992--26584113 Score: 185
Period size: 23 Copynumber: 5.3 Consensus size: 23
26583982 ATAAGTGCCA
*
26583992 CACTGATATGTAGCCGGAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
26584015 CACTGATATGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
26584038 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
26584061 CACTGATATGTAGCC-ATAGCTAC
1 CACTGATATGTAGCCGA-AGCTAC
26584084 CACTGA-ATTGTAGCCGAAGCTAC
1 CACTGATA-TGTAGCCGAAGCTAC
26584107 CACTGAT
1 CACTGAT
26584114 CAATAACATT
Statistics
Matches: 91, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
22 2 0.02
23 88 0.97
24 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:26584059 original size:46 final size:46
Alignment explanation
Indices: 26583992--26584113 Score: 208
Period size: 46 Copynumber: 2.7 Consensus size: 46
26583982 ATAAGTGCCA
* * *
26583992 CACTGATATGTAGCCGGAGCTACCACTGATATGTAGCCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGATATGTAGCCATAGCTAC
26584038 CACTGAAATGTAGCCGAAGCTACCACTGATATGTAGCCATAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGATATGTAGCCATAGCTAC
*
26584084 CACTGAATTGTAGCCGAAGCTACCACTGAT
1 CACTGAAATGTAGCCGAAGCTACCACTGAT
26584114 CAATAACATT
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 72 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (46 bp):
CACTGAAATGTAGCCGAAGCTACCACTGATATGTAGCCATAGCTAC
Found at i:26584365 original size:18 final size:17
Alignment explanation
Indices: 26584339--26584377 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
26584329 ATTTTCCTTC
26584339 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
26584356 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
26584374 CACA
1 CACA
26584378 ATTTATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:26589215 original size:30 final size:30
Alignment explanation
Indices: 26589169--26589225 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
26589159 TTTTTGAGCC
* *
26589169 TAGGGGTAAAATTGTAATTTTGTAAAACTT
1 TAGGGGCAAAAATGTAATTTTGTAAAACTT
*
26589199 TAGGGGCAAAAATGTAATTTTTTAAAA
1 TAGGGGCAAAAATGTAATTTTGTAAAA
26589226 ATTTGATTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.40, C:0.04, G:0.19, T:0.37
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTTTGTAAAACTT
Found at i:26589513 original size:51 final size:51
Alignment explanation
Indices: 26589458--26589799 Score: 309
Period size: 51 Copynumber: 6.7 Consensus size: 51
26589448 GTGAAAGTGT
* * *
26589458 TGGTCACGTGTGTAGTACTGTGTGAAGGCTACTAGGTGAATCGATAAATAA
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAATAA
* * * ** * * * *
26589509 TGGTCACATGTGTAGTACTAAGTGAAGGCTACAATATGTACCGAGAAGCT-T
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAA-ATAA
* *
26589560 TGGTCACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATAA
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAATAA
* * * ** * * * *
26589611 TGGTCACATGTGTAGTACTAAGTGAAGGCTACAATATGTACCGAGAAGCT-T
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAA-ATAA
* * *
26589662 TGGTCACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAACTG-TAAA-ACT
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAATA-A
* * **
26589712 TGATCACGTGTGTAGTACTATGTGAAGGCTATTATATGAACCG-TAAA-AA
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAATAA
* * *
26589761 TTGATCACGTGTGTAATACTATGTGAAGGCTCCTACGTG
1 -TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTG
26589800 TATCGAATGA
Statistics
Matches: 230, Mismatches: 55, Indels: 13
0.77 0.18 0.04
Matches are distributed among these distances:
50 79 0.34
51 149 0.65
52 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (51 bp):
TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAATAA
Found at i:26589616 original size:102 final size:102
Alignment explanation
Indices: 26589457--26589805 Score: 501
Period size: 102 Copynumber: 3.4 Consensus size: 102
26589447 AGTGAAAGTG
*
26589457 TTGGTCACGTGTGTAGTACTGTGTGAAGGCTACTAGGTGAATCGATAAATAATGGTCACATGTGT
1 TTGGTCACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGT
26589522 AGTACTAAGTGAAGGCTACAATATGTACCGAGAAGCT
66 AGTACTAAGTGAAGGCTACAATATGTACCGAGAAGCT
26589559 TTGGTCACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGT
1 TTGGTCACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGT
26589624 AGTACTAAGTGAAGGCTACAATATGTACCGAGAAGCT
66 AGTACTAAGTGAAGGCTACAATATGTACCGAGAAGCT
* * *
26589661 TTGGTCACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAA-CTG-TAAA-ACTTGATCACGTGT
1 TTGGTCACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATC-GATAAATA-ATGGTCACATGT
* ** * **
26589723 GTAGTACTATGTGAAGGCTATTATATGAACCGTA-AA-AA
64 GTAGTACTAAGTGAAGGCTACAATATGTACCG-AGAAGCT
* * * * *
26589761 TTGATCACGTGTGTAATACTATGTGAAGGCTCCTACGTGTATCGA
1 TTGGTCACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGA
26589806 ATGATAATAG
Statistics
Matches: 227, Mismatches: 15, Indels: 11
0.90 0.06 0.04
Matches are distributed among these distances:
100 38 0.17
101 45 0.20
102 144 0.63
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (102 bp):
TTGGTCACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGT
AGTACTAAGTGAAGGCTACAATATGTACCGAGAAGCT
Found at i:26590714 original size:5 final size:5
Alignment explanation
Indices: 26590704--26590756 Score: 70
Period size: 5 Copynumber: 10.6 Consensus size: 5
26590694 TGCTTGATGA
* * * *
26590704 AATGG AATGG AATGG AATGG TATGA AATGG AATAG TATGG AATGG AATGG
1 AATGG AATGG AATGG AATGG AATGG AATGG AATGG AATGG AATGG AATGG
26590754 AAT
1 AAT
26590757 ATATATATGA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
5 40 1.00
ACGTcount: A:0.42, C:0.00, G:0.34, T:0.25
Consensus pattern (5 bp):
AATGG
Found at i:26592370 original size:18 final size:19
Alignment explanation
Indices: 26592349--26592384 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
26592339 GTATACAGAG
*
26592349 GTAATAATAG-TTTGGAAA
1 GTAAAAATAGTTTTGGAAA
26592367 GTAAAAATAGTTTTGGAA
1 GTAAAAATAGTTTTGGAA
26592385 GAAAAATTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.44, C:0.00, G:0.22, T:0.33
Consensus pattern (19 bp):
GTAAAAATAGTTTTGGAAA
Found at i:26593358 original size:55 final size:55
Alignment explanation
Indices: 26593274--26593384 Score: 222
Period size: 55 Copynumber: 2.0 Consensus size: 55
26593264 ATAGATAAAT
26593274 TTAAAAAAAAAACTAAAGTGATGTTTCCTTTGCAAGTTTGAGAAACATTACATGG
1 TTAAAAAAAAAACTAAAGTGATGTTTCCTTTGCAAGTTTGAGAAACATTACATGG
26593329 TTAAAAAAAAAACTAAAGTGATGTTTCCTTTGCAAGTTTGAGAAACATTACATGG
1 TTAAAAAAAAAACTAAAGTGATGTTTCCTTTGCAAGTTTGAGAAACATTACATGG
26593384 T
1 T
26593385 AATCTAAGTA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.41, C:0.11, G:0.16, T:0.32
Consensus pattern (55 bp):
TTAAAAAAAAAACTAAAGTGATGTTTCCTTTGCAAGTTTGAGAAACATTACATGG
Found at i:26594494 original size:16 final size:16
Alignment explanation
Indices: 26594473--26594504 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26594463 ACTTCAGGGG
26594473 CAAAAATGTAATTTTT
1 CAAAAATGTAATTTTT
*
26594489 CAAAAATGTGATTTTT
1 CAAAAATGTAATTTTT
26594505 GGACTGGATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.06, G:0.09, T:0.44
Consensus pattern (16 bp):
CAAAAATGTAATTTTT
Found at i:26594781 original size:51 final size:51
Alignment explanation
Indices: 26594726--26595207 Score: 374
Period size: 51 Copynumber: 9.5 Consensus size: 51
26594716 GTGAAAGTGT
* * *
26594726 TGGTCACGTGTGTATTACTGTGTGAAGGCTACTACGTGAATCGATAAATAA
1 TGGTCACATGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAA
* * ** * * * * *
26594777 TGGTCACATGTGTAGTACTAAGTGAAGGCTACAATATGTACCGAGAAGCT-T
1 TGGTCACATGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAA-ATAA
* * *
26594828 TGGTCACGTGTGTAGTACTGTGTGAAGGCTATTACGTGAATCGATAAATAA
1 TGGTCACATGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAA
* * ** * * * * *
26594879 TGGTCACATGTGTAGTACTAAGTGAAGGCTACAATATGTACCGAGAAGCT-T
1 TGGTCACATGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAA-ATAA
* * *
26594930 TGGTCACATGTGTAGTACTGTGTGAAGGCTACTACGTGAATTGATAAATGA
1 TGGTCACATGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAA
* * * * * *
26594981 TAGTCACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGA-AAAGCT-T
1 TGGTCACATGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAA--TAA
* * *
26595032 TAGTCACATATGTAGTACTATGTGAAGGCTACTACGT-AA-CTG-TAAA-ACT
1 TGGTCACATGTGTAGTACTATGTGAAGGCTACTACGTGAATC-GATAAATA-A
* * *
26595081 TGATCACGTGTGTAGTACTATGTGAAGGCTATTACGTGAATCG-TAAA-AA
1 TGGTCACATGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAA
* * * * * *
26595130 TTGATCACGTGTGTAGTACTATGTGAAGACTACTATGTGTATCGA-ATGATAA
1 -TGGTCACATGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATA-AATAA
* * * *
26595182 TAGTAACATGGGTGGTACTATGTGAA
1 TGGTCACATGTGTAGTACTATGTGAA
26595208 AACCCCCAAA
Statistics
Matches: 339, Mismatches: 76, Indels: 32
0.76 0.17 0.07
Matches are distributed among these distances:
49 34 0.10
50 58 0.17
51 242 0.71
52 5 0.01
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.30
Consensus pattern (51 bp):
TGGTCACATGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAA
Found at i:26594884 original size:102 final size:102
Alignment explanation
Indices: 26594725--26595111 Score: 575
Period size: 102 Copynumber: 3.8 Consensus size: 102
26594715 AGTGAAAGTG
* *
26594725 TTGGTCACGTGTGTATTACTGTGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGT
1 TTGGTCACATGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGT
26594790 AGTACTAAGTGAAGGCTACAATATGTACCGAGAAGCT
66 AGTACTAAGTGAAGGCTACAATATGTACCGAGAAGCT
* *
26594827 TTGGTCACGTGTGTAGTACTGTGTGAAGGCTATTACGTGAATCGATAAATAATGGTCACATGTGT
1 TTGGTCACATGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGT
26594892 AGTACTAAGTGAAGGCTACAATATGTACCGAGAAGCT
66 AGTACTAAGTGAAGGCTACAATATGTACCGAGAAGCT
* * *
26594929 TTGGTCACATGTGTAGTACTGTGTGAAGGCTACTACGTGAATTGATAAATGATAGTCACATGTGT
1 TTGGTCACATGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGT
* * *
26594994 AGTACTAAGTGAAGGCTACTATGTGTACCGAAAAGCT
66 AGTACTAAGTGAAGGCTACAATATGTACCGAGAAGCT
* * * * * *
26595031 TTAGTCACATATGTAGTACTATGTGAAGGCTACTACGT-AA-CTG-TAAA-ACTTGATCACGTGT
1 TTGGTCACATGTGTAGTACTGTGTGAAGGCTACTACGTGAATC-GATAAATA-ATGGTCACATGT
*
26595092 GTAGTACTATGTGAAGGCTA
64 GTAGTACTAAGTGAAGGCTA
26595112 TTACGTGAAT
Statistics
Matches: 263, Mismatches: 20, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
100 31 0.12
101 3 0.01
102 229 0.87
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.30
Consensus pattern (102 bp):
TTGGTCACATGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGT
AGTACTAAGTGAAGGCTACAATATGTACCGAGAAGCT
Found at i:26596089 original size:15 final size:15
Alignment explanation
Indices: 26596069--26596125 Score: 78
Period size: 15 Copynumber: 3.8 Consensus size: 15
26596059 TGAATGCTTG
26596069 ATGAAATGGAATGGT
1 ATGAAATGGAATGGT
* *
26596084 ATGAAATGAAATAGT
1 ATGAAATGGAATGGT
*
26596099 ATGGAATGGAATGGT
1 ATGAAATGGAATGGT
*
26596114 ATGGAATGGAAT
1 ATGAAATGGAAT
26596126 ATATATATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 37 1.00
ACGTcount: A:0.42, C:0.00, G:0.32, T:0.26
Consensus pattern (15 bp):
ATGAAATGGAATGGT
Found at i:26596107 original size:5 final size:5
Alignment explanation
Indices: 26596073--26596125 Score: 52
Period size: 5 Copynumber: 10.6 Consensus size: 5
26596063 TGCTTGATGA
* * * * * *
26596073 AATGG AATGG TATGA AATGA AATAG TATGG AATGG AATGG TATGG AATGG
1 AATGG AATGG AATGG AATGG AATGG AATGG AATGG AATGG AATGG AATGG
26596123 AAT
1 AAT
26596126 ATATATATAT
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
5 38 1.00
ACGTcount: A:0.42, C:0.00, G:0.32, T:0.26
Consensus pattern (5 bp):
AATGG
Found at i:26599681 original size:25 final size:25
Alignment explanation
Indices: 26599640--26599711 Score: 81
Period size: 25 Copynumber: 2.9 Consensus size: 25
26599630 TCCTATACAT
** *
26599640 GTATGCTCACATGAGCTGTGAATTG
1 GTATGCTCACACAAGCTGTGAATCG
* * * *
26599665 GTATGCTCGCGCAAGCTATGGATCG
1 GTATGCTCACACAAGCTGTGAATCG
26599690 GTATGCTCACACAAGCTGTGAA
1 GTATGCTCACACAAGCTGTGAA
26599712 AATGGGCCTG
Statistics
Matches: 36, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (25 bp):
GTATGCTCACACAAGCTGTGAATCG
Found at i:26605577 original size:34 final size:34
Alignment explanation
Indices: 26605526--26605592 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
26605516 GCATTTTTGA
* *
26605526 ACTGTACTGAGATGGGCTGAAGCCCAA-ACTGTC
1 ACTGTACTGAAAAGGGCTGAAGCCCAAGACTGTC
* *
26605559 ACTGATACTGAAAAGGGCTTAGGCCCAAGACTGT
1 ACTG-TACTGAAAAGGGCTGAAGCCCAAGACTGT
26605593 TCAACTGTGC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 4 0.14
34 19 0.68
35 5 0.18
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.21
Consensus pattern (34 bp):
ACTGTACTGAAAAGGGCTGAAGCCCAAGACTGTC
Done.