Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58873029
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Warning! 639818 characters in sequence are not A, C, G, or T
File 93 of 196
Found at i:26976318 original size:30 final size:30
Alignment explanation
Indices: 26976237--26976379 Score: 169
Period size: 30 Copynumber: 4.7 Consensus size: 30
26976227 ATCCAATGCT
* * *
26976237 CAAATCAATTCGGCAATATATTTCCATATA
1 CAAATCAATTCGGCAATGTATATCTATATA
* *
26976267 CGAATCAAATTTGGCAATGTATATCTATATA
1 CAAATC-AATTCGGCAATGTATATCTATATA
**
26976298 CAAATCAATTCGATAATGTATATCTATATA
1 CAAATCAATTCGGCAATGTATATCTATATA
* * *
26976328 CAAATCAATTCGACAATGTATATTTTTATA
1 CAAATCAATTCGGCAATGTATATCTATATA
* *
26976358 CAAATCAATTCGGTAATTTATA
1 CAAATCAATTCGGCAATGTATA
26976380 AAACATATAC
Statistics
Matches: 97, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
30 72 0.74
31 25 0.26
ACGTcount: A:0.41, C:0.15, G:0.08, T:0.36
Consensus pattern (30 bp):
CAAATCAATTCGGCAATGTATATCTATATA
Found at i:26978490 original size:28 final size:28
Alignment explanation
Indices: 26978419--26978516 Score: 92
Period size: 28 Copynumber: 3.5 Consensus size: 28
26978409 CCTTTGACAT
* *
26978419 AGATAGCCACAGAGGCATCCTTGAA-CAA
1 AGATAGCCACAAAGGCATCCAT-AAGCAA
* *
26978447 TAGATAGCCATC-AAGGCGTCCATAAGTAA
1 -AGATAGCCA-CAAAGGCATCCATAAGCAA
* *
26978476 CGATAGCCACAAAGGCATCCATGAGCAA
1 AGATAGCCACAAAGGCATCCATAAGCAA
*
26978504 AGTTAGCCACAAA
1 AGATAGCCACAAA
26978517 TTTGTCCATT
Statistics
Matches: 56, Mismatches: 10, Indels: 7
0.77 0.14 0.10
Matches are distributed among these distances:
27 1 0.02
28 35 0.62
29 19 0.34
30 1 0.02
ACGTcount: A:0.40, C:0.24, G:0.20, T:0.15
Consensus pattern (28 bp):
AGATAGCCACAAAGGCATCCATAAGCAA
Found at i:26978630 original size:29 final size:29
Alignment explanation
Indices: 26978598--26978772 Score: 169
Period size: 29 Copynumber: 6.1 Consensus size: 29
26978588 CCACAAATTT
*
26978598 TCTCTTATAAAAAAATCAGCCACAAAGGC
1 TCTCATATAAAAAAATCAGCCACAAAGGC
* * *
26978627 TCTCATATAACAGAATCATCCACAAAGGC
1 TCTCATATAAAAAAATCAGCCACAAAGGC
* * * * *
26978656 TCTCATATAACAGATTTAGCAACAAAGGC
1 TCTCATATAAAAAAATCAGCCACAAAGGC
*
26978685 TCT--TATAAAATAGAATTAGCCAC-AAGGC
1 TCTCATATAAAA-A-AATCAGCCACAAAGGC
* *
26978713 TCTCATATAACAGAATCAGCCACAAAGGC
1 TCTCATATAAAAAAATCAGCCACAAAGGC
* *
26978742 TCTCATA-AAATAGAATCAGCCACAAAAGC
1 TCTCATATAAA-AAAATCAGCCACAAAGGC
26978771 TC
1 TC
26978773 CTTTTCGACA
Statistics
Matches: 123, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
27 6 0.05
28 19 0.15
29 92 0.75
30 6 0.05
ACGTcount: A:0.43, C:0.24, G:0.12, T:0.21
Consensus pattern (29 bp):
TCTCATATAAAAAAATCAGCCACAAAGGC
Found at i:26978738 original size:57 final size:57
Alignment explanation
Indices: 26978611--26978766 Score: 231
Period size: 57 Copynumber: 2.7 Consensus size: 57
26978601 CTTATAAAAA
* * *
26978611 AATCAGCCACAAAGGCTCTCATATAACAGAATCATCCACAAAGGCTCTCATATAACAG
1 AATCAGCCACAAAGGCTCTCATAAAATAGAATCAGCCAC-AAGGCTCTCATATAACAG
* * * * *
26978669 ATTTAGCAACAAAGGCTCTTATAAAATAGAATTAGCCACAAGGCTCTCATATAACAG
1 AATCAGCCACAAAGGCTCTCATAAAATAGAATCAGCCACAAGGCTCTCATATAACAG
26978726 AATCAGCCACAAAGGCTCTCATAAAATAGAATCAGCCACAA
1 AATCAGCCACAAAGGCTCTCATAAAATAGAATCAGCCACAA
26978767 AAGCTCCTTT
Statistics
Matches: 85, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
57 54 0.64
58 31 0.36
ACGTcount: A:0.43, C:0.24, G:0.13, T:0.20
Consensus pattern (57 bp):
AATCAGCCACAAAGGCTCTCATAAAATAGAATCAGCCACAAGGCTCTCATATAACAG
Found at i:26978767 original size:86 final size:85
Alignment explanation
Indices: 26978599--26978772 Score: 251
Period size: 86 Copynumber: 2.0 Consensus size: 85
26978589 CACAAATTTT
* *
26978599 CTCTTATAAAAAAATCAGCCACAAAGGCTCTCATATAACAGAATCATCCACAAAGGCTCTCATAT
1 CTCTTATAAAAAAATCAGCCACAAAGGCTCTCATATAACAGAATCAGCCACAAAGGCTCTCATAA
* * *
26978664 AACAGATTTAGCAACAAAGG
66 AACAGAATCAGCAACAAAAG
*
26978684 CTCTTATAAAATAGAATTAGCCAC-AAGGCTCTCATATAACAGAATCAGCCACAAAGGCTCTCAT
1 CTCTTATAAAA-A-AATCAGCCACAAAGGCTCTCATATAACAGAATCAGCCACAAAGGCTCTCAT
* *
26978748 AAAATAGAATCAGCCACAAAAG
64 AAAACAGAATCAGCAACAAAAG
26978770 CTC
1 CTC
26978773 CTTTTCGACA
Statistics
Matches: 79, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
85 11 0.14
86 59 0.75
87 9 0.11
ACGTcount: A:0.43, C:0.24, G:0.12, T:0.21
Consensus pattern (85 bp):
CTCTTATAAAAAAATCAGCCACAAAGGCTCTCATATAACAGAATCAGCCACAAAGGCTCTCATAA
AACAGAATCAGCAACAAAAG
Found at i:26981026 original size:85 final size:85
Alignment explanation
Indices: 26980880--26981035 Score: 267
Period size: 85 Copynumber: 1.8 Consensus size: 85
26980870 AGATTTGATT
* *
26980880 ATGAACCAAGTGGCAATTTGTTTAATCTACAAATATGTTCTGCACTCACAACAAGTTGCAGTAAC
1 ATGAACCAAGTGGCAATATGTTTAATCTACAAATATGTTCTGCACTCACAACAAGTGGCAGTAAC
*
26980945 TGCAAATATGTGGTTCGATC
66 AGCAAATATGTGGTTCGATC
* *
26980965 ATGAACCAAGTGGCAGTATGTTTAATCTACAAATATGTTTTGCACTCACAACAAGTGGCAGTAAC
1 ATGAACCAAGTGGCAATATGTTTAATCTACAAATATGTTCTGCACTCACAACAAGTGGCAGTAAC
26981030 AGCAAA
66 AGCAAA
26981036 ATAGTAGTGG
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 66 1.00
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (85 bp):
ATGAACCAAGTGGCAATATGTTTAATCTACAAATATGTTCTGCACTCACAACAAGTGGCAGTAAC
AGCAAATATGTGGTTCGATC
Found at i:26981552 original size:15 final size:14
Alignment explanation
Indices: 26981512--26981553 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
26981502 TCTATATAAA
*
26981512 TATTTTAGATTTAT
1 TATTTGAGATTTAT
26981526 TATTTGATGATTTAT
1 TATTTGA-GATTTAT
26981541 TATTTAGAGATTT
1 TATTT-GAGATTT
26981554 TATGGATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 6 0.24
15 17 0.68
16 2 0.08
ACGTcount: A:0.29, C:0.00, G:0.12, T:0.60
Consensus pattern (14 bp):
TATTTGAGATTTAT
Found at i:26984498 original size:43 final size:43
Alignment explanation
Indices: 26984445--26984696 Score: 326
Period size: 43 Copynumber: 5.9 Consensus size: 43
26984435 TTTTAGAAAT
* * *
26984445 AAACACCGCTATAGATTAGGACCTTTAGTGGCGCTTTTTCCAC
1 AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTTCCAC
* *
26984488 AAACGCCGCTATAGATTAGGACCTTTAGCGGCGC-TTTTGCAC
1 AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTTCCAC
* * *
26984530 AAACACTGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTTCCAC
* * * *
26984573 AAATGCCGCTATAGATCAAGACCTTTAGCGGTGCTTTTTCTAC
1 AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTTCCAC
* * * *
26984616 AAACGCCGCTATAGATCAAGACCTTTAGCAGTGCTTTTTCTAC
1 AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTTCCAC
* * *
26984659 AAACGCCGCTATAAATCAGGATCTTTAGCAGCGCTTTT
1 AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTT
26984697 GCACAGCTAT
Statistics
Matches: 187, Mismatches: 21, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
42 38 0.20
43 149 0.80
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (43 bp):
AAACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTTCCAC
Found at i:26984661 original size:86 final size:85
Alignment explanation
Indices: 26984445--26984729 Score: 357
Period size: 85 Copynumber: 3.4 Consensus size: 85
26984435 TTTTAGAAAT
* * *
26984445 AAACACCGCTATAGATTAGGACCTTTAGTGGCGCTTTTTCCACAAACGCCGCTATAGATTAGGAC
1 AAACACCGCTATAGATCAGGACCTTTAGCGGCGCTTTTTCCACAAACGCCGCTATAGATCAGGAC
26984510 CTTTAGCGGCGCTTTTGCAC
66 CTTTAGCGGCGCTTTTGCAC
* * * *
26984530 AAACACTGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCCACAAATGCCGCTATAGATCAAGAC
1 AAACACCGCTATAGATCAGGACCTTTAGCGGCGCTTTTTCCACAAACGCCGCTATAGATCAGGAC
* *
26984595 CTTTAGCGGTGCTTTTTCTAC
66 CTTTAGCGGCGCTTTTGC-AC
* * * * * * *
26984616 AAACGCCGCTATAGATCAAGACCTTTAGCAGTGCTTTTTCTACAAACGCCGCTATAAATCAGGAT
1 AAACACCGCTATAGATCAGGACCTTTAGCGGCGCTTTTTCCACAAACGCCGCTATAGATCAGGAC
*
26984681 CTTTAGCAGCGCTTTTG--C
66 CTTTAGCGGCGCTTTTGCAC
*
26984699 --ACA--GCTATAGATCAAGACCTTTAGCGGCGCT
1 AAACACCGCTATAGATCAGGACCTTTAGCGGCGCT
26984730 ATAGATCAAG
Statistics
Matches: 173, Mismatches: 26, Indels: 8
0.84 0.13 0.04
Matches are distributed among these distances:
79 26 0.15
81 2 0.01
83 1 0.01
85 74 0.43
86 70 0.40
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (85 bp):
AAACACCGCTATAGATCAGGACCTTTAGCGGCGCTTTTTCCACAAACGCCGCTATAGATCAGGAC
CTTTAGCGGCGCTTTTGCAC
Found at i:26984730 original size:25 final size:25
Alignment explanation
Indices: 26984702--26984754 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
26984692 CTTTTGCACA
*
26984702 GCTATAGATCAAGACCTTTAGCGGC
1 GCTATAGATCAAGAACTTTAGCGGC
26984727 GCTATAGATCAAGAACTTTAGCGGC
1 GCTATAGATCAAGAACTTTAGCGGC
26984752 GCT
1 GCT
26984755 TTTCCCGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (25 bp):
GCTATAGATCAAGAACTTTAGCGGC
Found at i:26988570 original size:7 final size:7
Alignment explanation
Indices: 26988558--26988642 Score: 59
Period size: 7 Copynumber: 12.3 Consensus size: 7
26988548 AATTAATTTA
26988558 AACCCTT
1 AACCCTT
26988565 AACCCTT
1 AACCCTT
*
26988572 AACCCTA
1 AACCCTT
26988579 AACCC-T
1 AACCCTT
*
26988585 AACTCCTA
1 AAC-CCTT
*
26988593 AACCCTA
1 AACCCTT
* *
26988600 AAGCCTA
1 AACCCTT
*
26988607 AATCCTT
1 AACCCTT
*
26988614 AACCCCT
1 AACCCTT
26988621 AA-CCTT
1 AACCCTT
26988627 GAACCC-T
1 -AACCCTT
*
26988634 AACCTTT
1 AACCCTT
26988641 AA
1 AA
26988643 ACCGTAAATC
Statistics
Matches: 63, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
6 10 0.16
7 48 0.76
8 5 0.08
ACGTcount: A:0.35, C:0.39, G:0.02, T:0.24
Consensus pattern (7 bp):
AACCCTT
Found at i:26988577 original size:14 final size:14
Alignment explanation
Indices: 26988558--26988635 Score: 72
Period size: 14 Copynumber: 5.6 Consensus size: 14
26988548 AATTAATTTA
*
26988558 AACCCTTAACCCTT
1 AACCCTAAACCCTT
26988572 AACCCTAAACCC-T
1 AACCCTAAACCCTT
*
26988585 AACTCCTAAACCCTA
1 AAC-CCTAAACCCTT
* *
26988600 AAGCCTAAATCCTT
1 AACCCTAAACCCTT
26988614 AACCCCT-AA-CCTT
1 AA-CCCTAAACCCTT
26988627 GAACCCTAA
1 -AACCCTAA
26988636 CCTTTAAACC
Statistics
Matches: 53, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
13 12 0.23
14 36 0.68
15 5 0.09
ACGTcount: A:0.36, C:0.40, G:0.03, T:0.22
Consensus pattern (14 bp):
AACCCTAAACCCTT
Found at i:26988580 original size:21 final size:21
Alignment explanation
Indices: 26988556--26988618 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
26988546 CTAATTAATT
26988556 TAAACCCTTAACCCTTAACCC
1 TAAACCCTTAACCCTTAACCC
*
26988577 TAAACCC-TAACTCCTAAACCC
1 TAAACCCTTAAC-CCTTAACCC
* * *
26988598 TAAAGCCTAAATCCTTAACCC
1 TAAACCCTTAACCCTTAACCC
26988619 CTAACCTTGA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
20 4 0.11
21 29 0.83
22 2 0.06
ACGTcount: A:0.37, C:0.40, G:0.02, T:0.22
Consensus pattern (21 bp):
TAAACCCTTAACCCTTAACCC
Found at i:26988650 original size:7 final size:7
Alignment explanation
Indices: 26988640--26988695 Score: 58
Period size: 7 Copynumber: 7.9 Consensus size: 7
26988630 CCCTAACCTT
*
26988640 TAAACCG
1 TAAACCA
*
26988647 TAAATCA
1 TAAACCA
26988654 TAAACCA
1 TAAACCA
*
26988661 TAAATCA
1 TAAACCA
*
26988668 TAAACCC
1 TAAACCA
26988675 TAAACTCA
1 TAAAC-CA
*
26988683 TAATCCA
1 TAAACCA
26988690 TAAACC
1 TAAACC
26988696 TTTAAATAGT
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
7 34 0.87
8 5 0.13
ACGTcount: A:0.50, C:0.27, G:0.02, T:0.21
Consensus pattern (7 bp):
TAAACCA
Found at i:26988691 original size:22 final size:21
Alignment explanation
Indices: 26988654--26988695 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
26988644 CCGTAAATCA
26988654 TAAACCATAAATCATAAACCC
1 TAAACCATAAATCATAAACCC
26988675 TAAACTCAT-AATCCATAAACC
1 TAAAC-CATAAAT-CATAAACC
26988696 TTTAAATAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (21 bp):
TAAACCATAAATCATAAACCC
Found at i:26988694 original size:15 final size:14
Alignment explanation
Indices: 26988640--26988693 Score: 72
Period size: 14 Copynumber: 3.8 Consensus size: 14
26988630 CCCTAACCTT
*
26988640 TAAACCGTAAATCA
1 TAAACCATAAATCA
26988654 TAAACCATAAATCA
1 TAAACCATAAATCA
*
26988668 TAAACCCTAAACTCA
1 TAAACCATAAA-TCA
*
26988683 TAATCCATAAA
1 TAAACCATAAA
26988694 CCTTTAAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
14 23 0.66
15 12 0.34
ACGTcount: A:0.52, C:0.24, G:0.02, T:0.22
Consensus pattern (14 bp):
TAAACCATAAATCA
Found at i:26988882 original size:8 final size:8
Alignment explanation
Indices: 26988869--26988897 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
26988859 TTAACCCGAC
26988869 CCCTAAAT
1 CCCTAAAT
26988877 CCCTAAA-
1 CCCTAAAT
26988884 CCCTAAAT
1 CCCTAAAT
26988892 CCCTAA
1 CCCTAA
26988898 CTCTTAACTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.38, C:0.41, G:0.00, T:0.21
Consensus pattern (8 bp):
CCCTAAAT
Found at i:26988889 original size:15 final size:15
Alignment explanation
Indices: 26988869--26988897 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
26988859 TTAACCCGAC
26988869 CCCTAAATCCCTAAA
1 CCCTAAATCCCTAAA
26988884 CCCTAAATCCCTAA
1 CCCTAAATCCCTAA
26988898 CTCTTAACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.41, G:0.00, T:0.21
Consensus pattern (15 bp):
CCCTAAATCCCTAAA
Found at i:26988924 original size:21 final size:21
Alignment explanation
Indices: 26988895--26988948 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 21
26988885 CCTAAATCCC
*
26988895 TAACTCTTAAC-TCTTAACCCT
1 TAACCCTTAACGTC-TAACCCT
26988916 TAACCCTTAACGTCTAACCCT
1 TAACCCTTAACGTCTAACCCT
26988937 TAAACCCTTAAC
1 T-AACCCTTAAC
26988949 CCTAATGATA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 18 0.60
22 12 0.40
ACGTcount: A:0.31, C:0.35, G:0.02, T:0.31
Consensus pattern (21 bp):
TAACCCTTAACGTCTAACCCT
Found at i:26988944 original size:8 final size:7
Alignment explanation
Indices: 26988877--26988951 Score: 64
Period size: 7 Copynumber: 10.6 Consensus size: 7
26988867 ACCCCTAAAT
*
26988877 CCCTAAA
1 CCCTTAA
*
26988884 CCCTAAA
1 CCCTTAA
26988891 TCCC-TAA
1 -CCCTTAA
*
26988898 CTCTTAA
1 CCCTTAA
*
26988905 CTCTTAA
1 CCCTTAA
26988912 CCCTTAA
1 CCCTTAA
26988919 CCCTTAA
1 CCCTTAA
*
26988926 -CGTCTAA
1 CCCT-TAA
26988933 CCCTTAAA
1 CCCTT-AA
26988941 CCCTTAA
1 CCCTTAA
26988948 CCCT
1 CCCT
26988952 AATGATACGC
Statistics
Matches: 58, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
6 4 0.07
7 42 0.72
8 12 0.21
ACGTcount: A:0.31, C:0.40, G:0.01, T:0.28
Consensus pattern (7 bp):
CCCTTAA
Found at i:26990317 original size:20 final size:20
Alignment explanation
Indices: 26990292--26990378 Score: 129
Period size: 20 Copynumber: 4.3 Consensus size: 20
26990282 GAGCTCAATA
* *
26990292 AGCTGAATTGAGCTCGTGGG
1 AGCTGAATTGAGCTCGAGTG
* *
26990312 AGCTGACTTGAGCTCGAATG
1 AGCTGAATTGAGCTCGAGTG
*
26990332 AGCTGAATTGAGCTCAAGTG
1 AGCTGAATTGAGCTCGAGTG
26990352 AGCTGAATTGAGCTCGAGTG
1 AGCTGAATTGAGCTCGAGTG
26990372 AGCTGAA
1 AGCTGAA
26990379 CCGCATGGAA
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 59 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.24
Consensus pattern (20 bp):
AGCTGAATTGAGCTCGAGTG
Found at i:26990324 original size:10 final size:10
Alignment explanation
Indices: 26990311--26990378 Score: 68
Period size: 10 Copynumber: 6.8 Consensus size: 10
26990301 GAGCTCGTGG
*
26990311 GAGCTGACTT
1 GAGCTGAATT
26990321 GAGCTCGAA-T
1 GAGCT-GAATT
26990331 GAGCTGAATT
1 GAGCTGAATT
* *
26990341 GAGCTCAAGT
1 GAGCTGAATT
26990351 GAGCTGAATT
1 GAGCTGAATT
*
26990361 GAGCTCG-AGT
1 GAGCT-GAATT
26990371 GAGCTGAA
1 GAGCTGAA
26990379 CCGCATGGAA
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
9 4 0.08
10 41 0.85
11 3 0.06
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.24
Consensus pattern (10 bp):
GAGCTGAATT
Found at i:26990336 original size:40 final size:40
Alignment explanation
Indices: 26990282--26990378 Score: 133
Period size: 40 Copynumber: 2.5 Consensus size: 40
26990272 AGCTAATAAA
* ** *
26990282 GAGCTC-AATAAGCTGAATTGAGCTCGTGGGAGCTGACTT
1 GAGCTCGAATGAGCTGAATTGAGCTCAAGGGAGCTGAATT
*
26990321 GAGCTCGAATGAGCTGAATTGAGCTCAAGTGAGCTGAATT
1 GAGCTCGAATGAGCTGAATTGAGCTCAAGGGAGCTGAATT
*
26990361 GAGCTCGAGTGAGCTGAA
1 GAGCTCGAATGAGCTGAA
26990379 CCGCATGGAA
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
39 6 0.12
40 45 0.88
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.24
Consensus pattern (40 bp):
GAGCTCGAATGAGCTGAATTGAGCTCAAGGGAGCTGAATT
Found at i:26991013 original size:41 final size:41
Alignment explanation
Indices: 26990913--26991223 Score: 234
Period size: 41 Copynumber: 7.6 Consensus size: 41
26990903 TAAAATGTCT
* **
26990913 TTAGCGGCG-CTTTCTCAAAAATGCCGCTAAAGGACC-CTAGCA
1 TTAGCGGCGCCTTT-TCAAAAACGCCGCTAAA-G-CCAAAAGCA
26990955 TTAGCGGCG-CTTCTTCAAAAACGCCGCTAAAGCCAAAAGCA
1 TTAGCGGCGCCTT-TTCAAAAACGCCGCTAAAGCCAAAAGCA
*
26990996 TTAGCGGAGCCTTTTCAAAAACGCCGCTAAAG--AACATAGCA
1 TTAGCGGCGCCTTTTCAAAAACGCCGCTAAAGCCAA-A-AGCA
* * * **
26991037 TTAGCGGCG-CTTTTGAAAAGCGCCGCTTAAG--AACTCTGCA
1 TTAGCGGCGCCTTTTCAAAAACGCCGCTAAAGCCAA--AAGCA
* *
26991077 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCTC-AGAGCA
1 TTAGCGGCGCCTTTTCAAAAACGCCGCTAAAGC-CAAAAGCA
* * **
26991118 TTAGTGGCG-CTTCTCCAAAAACGCCGCTAAAGCCCCAAGCA
1 TTAGCGGCGCCTT-TTCAAAAACGCCGCTAAAGCCAAAAGCA
* * * * **
26991159 TTAACAGTGCTTTTTCAAAAACGCCGCTAAAGTCC-CTAGCA
1 TTAGCGGCGCCTTTTCAAAAACGCCGCTAAAG-CCAAAAGCA
26991200 TTAGCGGCG--TTTTCAAAAAACGCC
1 TTAGCGGCGCCTTTTC-AAAAACGCC
26991224 ACTGAAGATC
Statistics
Matches: 222, Mismatches: 32, Indels: 32
0.78 0.11 0.11
Matches are distributed among these distances:
39 7 0.03
40 48 0.22
41 130 0.59
42 35 0.16
43 2 0.01
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.22
Consensus pattern (41 bp):
TTAGCGGCGCCTTTTCAAAAACGCCGCTAAAGCCAAAAGCA
Found at i:26991171 original size:122 final size:123
Alignment explanation
Indices: 26990919--26991223 Score: 354
Period size: 122 Copynumber: 2.5 Consensus size: 123
26990909 GTCTTTAGCG
* * *
26990919 GCGCTTTCTCAAAAATGCCGCTAAAGGACCCTAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTA
1 GCGCTTTTTCAAAAACGCCGCTAAA-GACCCTAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTA
* * *
26990984 AAGCCAAAAGCATTAGCGGAGCCTTTTCAAAAACGCCGCTAAAGAACATAGCATTAGCG
65 AAGCCAAAAGCATTAGCGGAGCCTTTCCAAAAACGCCGCTAAAGAACATAGCATTAACA
* * * *
26991043 GCGC-TTTTGAAAAGCGCCGCTTAAGAACTCT-GCATTAGCGGCGCTTTTTCAAAAACGCCGCTA
1 GCGCTTTTTCAAAAACGCCGCTAAAG-ACCCTAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTA
* * * **
26991106 AAGCTC-AGAGCATTAGTGGCG-CTTCTCCAAAAACGCCGCTAAAGCCCCA-AGCATTAACA
65 AAGC-CAAAAGCATTAGCGGAGCCTT-TCCAAAAACGCCGCTAAAG-AACATAGCATTAACA
* *
26991165 GTGCTTTTTCAAAAACGCCGCTAAAGTCCCTAGCATTAGCGGCG--TTTTCAAAAAACGCC
1 GCGCTTTTTCAAAAACGCCGCTAAAGACCCTAGCATTAGCGGCGCTTTTTC-AAAAACGCC
26991224 ACTGAAGATC
Statistics
Matches: 153, Mismatches: 21, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
121 8 0.05
122 89 0.58
123 52 0.34
124 4 0.03
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (123 bp):
GCGCTTTTTCAAAAACGCCGCTAAAGACCCTAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAA
AGCCAAAAGCATTAGCGGAGCCTTTCCAAAAACGCCGCTAAAGAACATAGCATTAACA
Found at i:26991184 original size:163 final size:163
Alignment explanation
Indices: 26990913--26991217 Score: 434
Period size: 163 Copynumber: 1.9 Consensus size: 163
26990903 TAAAATGTCT
* ** *
26990913 TTAGCGGCGCTTTCTCAAAAATGCCGCTAAAGGACCCTAGCATTAGCGGCGCTTCTTCAAAAACG
1 TTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGGACCAGAGCATTAGCGGCGCTTCTCCAAAAACG
* *
26990978 CCGCTAAAGCCAAAAGCATTAGCGGAGCCTTTTCAAAAACGCCGCTAAAGAACATAGCATTAGCG
66 CCGCTAAAGCCAAAAGCATTAACAGAGCCTTTTCAAAAACGCCGCTAAAGAACATAGCATTAGCG
*
26991043 GCGCTTTTGAAAAGCGCCGCTTAAGAACTCTGCA
131 GCG-TTTTCAAAAGCGCCGCTTAAGAACTCTGCA
* *
26991077 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAA-G-CTCAGAGCATTAGTGGCGCTTCTCCAAAAAC
1 TTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGGAC-CAGAGCATTAGCGGCGCTTCTCCAAAAAC
** * * ** *
26991140 GCCGCTAAAGCCCCAAGCATTAACAGTGCTTTTTCAAAAACGCCGCTAAAGTCCCTAGCATTAGC
65 GCCGCTAAAGCCAAAAGCATTAACAGAGCCTTTTCAAAAACGCCGCTAAAGAACATAGCATTAGC
26991205 GGCGTTTTCAAAA
130 GGCGTTTTCAAAA
26991218 AACGCCACTG
Statistics
Matches: 124, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
162 9 0.07
163 86 0.69
164 29 0.23
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (163 bp):
TTAGCGGCGCTTTCTCAAAAACGCCGCTAAAGGACCAGAGCATTAGCGGCGCTTCTCCAAAAACG
CCGCTAAAGCCAAAAGCATTAACAGAGCCTTTTCAAAAACGCCGCTAAAGAACATAGCATTAGCG
GCGTTTTCAAAAGCGCCGCTTAAGAACTCTGCA
Found at i:26991332 original size:39 final size:40
Alignment explanation
Indices: 26991289--26991404 Score: 128
Period size: 40 Copynumber: 2.9 Consensus size: 40
26991279 ATTTTTGGTA
26991289 AAAACGCCGCTAATGCTC-ATTTTTATCGGCGTTTTTCAG
1 AAAACGCCGCTAATGCTCGATTTTTATCGGCGTTTTTCAG
** * * * * *
26991328 AAAACGCAACTAATGCTCGATCTTTAGT-GGTGATTTCCAT
1 AAAACGCCGCTAATGCTCGATTTTTA-TCGGCGTTTTTCAG
* *
26991368 AAAGCGCCGCTAATGCTCGATTTTTACCGGCGTTTTT
1 AAAACGCCGCTAATGCTCGATTTTTATCGGCGTTTTT
26991405 TTTCCAAGCG
Statistics
Matches: 59, Mismatches: 15, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
39 16 0.27
40 42 0.71
41 1 0.02
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.34
Consensus pattern (40 bp):
AAAACGCCGCTAATGCTCGATTTTTATCGGCGTTTTTCAG
Found at i:26992602 original size:29 final size:31
Alignment explanation
Indices: 26992570--26992628 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
26992560 TAATTTTTTT
26992570 AAAGTT-ATGGTA-AAAAATATTATAATAAA
1 AAAGTTAATGGTATAAAAATATTATAATAAA
* *
26992599 AAAGTTACATGTTATAAAAGTATTATAATA
1 AAAGTTA-ATGGTATAAAAATATTATAATA
26992629 TATTTATTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 6 0.24
31 5 0.20
32 14 0.56
ACGTcount: A:0.54, C:0.02, G:0.10, T:0.34
Consensus pattern (31 bp):
AAAGTTAATGGTATAAAAATATTATAATAAA
Found at i:26992738 original size:21 final size:21
Alignment explanation
Indices: 26992692--26992738 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
26992682 GTCCATACTA
26992692 TATATTATAAAAATAATATGT
1 TATATTATAAAAATAATATGT
26992713 T-TATTCATAAAAA-AA-AGTGT
1 TATATT-ATAAAAATAATA-TGT
26992733 TATATT
1 TATATT
26992739 TTTTTTATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
19 1 0.04
20 10 0.43
21 12 0.52
ACGTcount: A:0.49, C:0.02, G:0.06, T:0.43
Consensus pattern (21 bp):
TATATTATAAAAATAATATGT
Found at i:26994694 original size:21 final size:21
Alignment explanation
Indices: 26994621--26994730 Score: 91
Period size: 23 Copynumber: 5.1 Consensus size: 21
26994611 GTTCTTAAAT
26994621 TTTAATAAGATTATTAATATAA
1 TTTAATAA-ATTATTAATATAA
* *
26994643 -ATAATAAATAATTTAATGATAA
1 TTTAATAAATTA-TTAAT-ATAA
*
26994665 TTTAAAATAATTATTAAATATAA
1 TTTAATA-AATTATT-AATATAA
* *
26994688 TTTAATAAA-AAAT-ATATAA
1 TTTAATAAATTATTAATATAA
*
26994707 TTTAATAAAATTCTTAATATAA
1 TTTAAT-AAATTATTAATATAA
26994729 TT
1 TT
26994731 ATTCTTATAT
Statistics
Matches: 69, Mismatches: 11, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
19 12 0.17
20 6 0.09
21 14 0.20
22 14 0.20
23 16 0.23
24 7 0.10
ACGTcount: A:0.55, C:0.01, G:0.02, T:0.43
Consensus pattern (21 bp):
TTTAATAAATTATTAATATAA
Found at i:26995186 original size:77 final size:77
Alignment explanation
Indices: 26995054--26995215 Score: 297
Period size: 77 Copynumber: 2.1 Consensus size: 77
26995044 ATTTTTTGTC
26995054 CACTTTAACAATTGAACTTGACAATTAGATATATTTTAATCTTTGAACTTAAAATATATAAAATT
1 CACTTTAACAATTGAACTTGACAATTAGATATATTTTAATCTTTGAACTTAAAATATATAAAATT
*
26995119 TTATTGGCATAA
66 TTATTGACATAA
* *
26995131 CACTTTAATAATTGAACTTGACAATTAGATATATTTTAATCTTTGAACTTGAAATATATAAAATT
1 CACTTTAACAATTGAACTTGACAATTAGATATATTTTAATCTTTGAACTTAAAATATATAAAATT
26995196 TTATTGACATAA
66 TTATTGACATAA
26995208 CACTTTAA
1 CACTTTAA
26995216 GATTGTCTCA
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
77 82 1.00
ACGTcount: A:0.41, C:0.10, G:0.07, T:0.41
Consensus pattern (77 bp):
CACTTTAACAATTGAACTTGACAATTAGATATATTTTAATCTTTGAACTTAAAATATATAAAATT
TTATTGACATAA
Found at i:26998357 original size:19 final size:20
Alignment explanation
Indices: 26998330--26998379 Score: 68
Period size: 19 Copynumber: 2.5 Consensus size: 20
26998320 AATATAGAAA
*
26998330 ATTTGGAATTTTT-ATAAA-T
1 ATTTTGAATTTTTGA-AAATT
26998349 ATTTTGAATTTTTGAAAATT
1 ATTTTGAATTTTTGAAAATT
26998369 ATTTTGAATTT
1 ATTTTGAATTT
26998380 CTTTTGCAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.56
Consensus pattern (20 bp):
ATTTTGAATTTTTGAAAATT
Found at i:27004244 original size:23 final size:19
Alignment explanation
Indices: 27004197--27004233 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
27004187 GGTTCATATT
27004197 GAACACTTACCATTTCATG
1 GAACACTTACCATTTCATG
27004216 GAACACTTACCATTTCAT
1 GAACACTTACCATTTCAT
27004234 TTGCATAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.27, G:0.08, T:0.32
Consensus pattern (19 bp):
GAACACTTACCATTTCATG
Found at i:27004516 original size:29 final size:29
Alignment explanation
Indices: 27004473--27004743 Score: 287
Period size: 29 Copynumber: 9.3 Consensus size: 29
27004463 GTGTGCTAAA
*
27004473 CGATGGTCGTAACCATCCCTTTTCATATT
1 CGATGGTCGTCACCATCCCTTTTCATATT
*
27004502 CGATGGTCATCACCATCCCTTTTCATATT
1 CGATGGTCGTCACCATCCCTTTTCATATT
27004531 CGATGGTCGTCACCATCCCTTTTCATATT
1 CGATGGTCGTCACCATCCCTTTTCATATT
* * * *
27004560 CAATGTTCG-GAGCCATCCCTTTTCATCAAT
1 CGATGGTCGTCA-CCATCCCTTTTCAT-ATT
* * * *
27004590 CGATGATCGCCACTATCCCTTTTTATAGTT
1 CGATGGTCGTCACCATCCCTTTTCATA-TT
*
27004620 -GATGGTCGTCACCATCCCTTTTCATAGT
1 CGATGGTCGTCACCATCCCTTTTCATATT
* *** *
27004648 CGATAGTCAAAACTATCCCTTTTCATATT
1 CGATGGTCGTCACCATCCCTTTTCATATT
* *
27004677 TGATGGTCGTCACCATCCCTTTTTATAGTT
1 CGATGGTCGTCACCATCCCTTTTCATA-TT
* * *
27004707 -GATGGTTGTTACCATCCCTTTTCATAGT
1 CGATGGTCGTCACCATCCCTTTTCATATT
*
27004735 CGATAGTCG
1 CGATGGTCG
27004744 AAACTATCCA
Statistics
Matches: 198, Mismatches: 37, Indels: 14
0.80 0.15 0.06
Matches are distributed among these distances:
28 3 0.02
29 170 0.86
30 24 0.12
31 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.14, T:0.38
Consensus pattern (29 bp):
CGATGGTCGTCACCATCCCTTTTCATATT
Found at i:27004693 original size:117 final size:117
Alignment explanation
Indices: 27004487--27004699 Score: 286
Period size: 117 Copynumber: 1.8 Consensus size: 117
27004477 GGTCGTAACC
* * ***
27004487 ATCCCTTTTCATATTCGATGGTCATCACCATCCCTTTTCATATTCGATGGTCGTCACCATCCCTT
1 ATCCCTTTTCATATTCGATGGTCATCACCATCCCTTTTCATAGTCGATAGTCAAAACCATCCCTT
* *
27004552 TTCATATTCAATGTTCGGAGCCATCCCTTTTCATCAATCGATGATCGCCACT
66 TTCATATTCAATGGTCGCAGCCATCCCTTTTCATCAATCGATGATCGCCACT
* * *
27004604 ATCCCTTTTTATAGTT-GATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCAAAACTATCCCT
1 ATCCCTTTTCATA-TTCGATGGTCATCACCATCCCTTTTCATAGTCGATAGTCAAAACCATCCCT
**
27004668 TTTCATATTTGATGGTCGTCA-CCATCCCTTTT
65 TTTCATATTCAATGGTCG-CAGCCATCCCTTTT
27004700 TATAGTTGAT
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
117 79 0.96
118 3 0.04
ACGTcount: A:0.21, C:0.29, G:0.12, T:0.38
Consensus pattern (117 bp):
ATCCCTTTTCATATTCGATGGTCATCACCATCCCTTTTCATAGTCGATAGTCAAAACCATCCCTT
TTCATATTCAATGGTCGCAGCCATCCCTTTTCATCAATCGATGATCGCCACT
Found at i:27004732 original size:87 final size:87
Alignment explanation
Indices: 27004473--27004758 Score: 360
Period size: 87 Copynumber: 3.3 Consensus size: 87
27004463 GTGTGCTAAA
* * * * *
27004473 CGATGGTCGTAACCATCCCTTTTCATATTCGATGGTCATCACCATCCCTTTTCATA-TTCGATGG
1 CGATAGTCGAAACTATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTTATAGTT-GATGG
*
27004537 TCGTCACCATCCCTTTTCATATT
65 TCGTCACCATCCCTTTTCATAGT
* * * * * * * *
27004560 CAAT-GTTCGGAGCCATCCCTTTTCATCAATCGATGATCGCCACTATCCCTTTTTATAGTTGATG
1 CGATAG-TCGAAACTATCCCTTTTCAT-ATTCGATGGTCGTCACCATCCCTTTTTATAGTTGATG
27004624 GTCGTCACCATCCCTTTTCATAGT
64 GTCGTCACCATCCCTTTTCATAGT
* *
27004648 CGATAGTCAAAACTATCCCTTTTCATATTTGATGGTCGTCACCATCCCTTTTTATAGTTGATGGT
1 CGATAGTCGAAACTATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTTATAGTTGATGGT
* *
27004713 TGTTACCATCCCTTTTCATAGT
66 CGTCACCATCCCTTTTCATAGT
*
27004735 CGATAGTCGAAACTATCCATTTTC
1 CGATAGTCGAAACTATCCCTTTTC
27004759 TTTAATATTT
Statistics
Matches: 171, Mismatches: 24, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
86 1 0.01
87 97 0.57
88 70 0.41
89 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.14, T:0.38
Consensus pattern (87 bp):
CGATAGTCGAAACTATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTTATAGTTGATGGT
CGTCACCATCCCTTTTCATAGT
Found at i:27004776 original size:146 final size:146
Alignment explanation
Indices: 27004474--27004757 Score: 344
Period size: 146 Copynumber: 2.0 Consensus size: 146
27004464 TGTGCTAAAC
* * * * **
27004474 GATGGTCGTAACCATCCCTTTTCATATTCGATGGTCATCACCATCCCTTTTCATATTCGATGGTC
1 GATGCTCGTCACCATCCCTTTTCATAGTCGATAGTCAAAACCATCCCTTTTCATATTCGATGGTC
**
27004539 GTCACCATCCCTTTTCATATTCAATGTTCGGAGCCATCCCTTTTCATCAATCGATGATCGCCACT
66 GTCACCATCCCTTTTCATATTCAATGTTCGGAGCCATCCCTTTTCATCAATCGATGATCGAAACT
* *
27004604 ATCCCTTTTTATAGTT
131 ATCCATTTTTATAATT
* * *
27004620 GATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCAAAACTATCCCTTTTCATATTTGATGGTC
1 GATGCTCGTCACCATCCCTTTTCATAGTCGATAGTCAAAACCATCCCTTTTCATATTCGATGGTC
* * * *
27004685 GTCACCATCCCTTTTTATAGTT-GATGGTT-GTTA-CCATCCCTTTTCAT-AGTCGAT-AGTCGA
66 GTCACCATCCCTTTTCATA-TTCAAT-GTTCG-GAGCCATCCCTTTTCATCAATCGATGA-TCGA
27004745 AACTATCCATTTT
127 AACTATCCATTTT
27004758 CTTTAATATT
Statistics
Matches: 120, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
144 1 0.01
145 20 0.17
146 93 0.77
147 6 0.05
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.38
Consensus pattern (146 bp):
GATGCTCGTCACCATCCCTTTTCATAGTCGATAGTCAAAACCATCCCTTTTCATATTCGATGGTC
GTCACCATCCCTTTTCATATTCAATGTTCGGAGCCATCCCTTTTCATCAATCGATGATCGAAACT
ATCCATTTTTATAATT
Found at i:27007913 original size:53 final size:54
Alignment explanation
Indices: 27007799--27007924 Score: 139
Period size: 53 Copynumber: 2.3 Consensus size: 54
27007789 CTTCAAACCC
* * * **
27007799 TTTTACTTTCCCCAAAAAACTTTTACTTCCCCCCAAACCCCCAAAACTTTTTTCA
1 TTTTACTTTCTCCACAAAACTTTTACAT-CCCCCAAACCCCCAAAACAATTTTCA
* * *
27007854 TTTTACTTTCTCCTCAAAACTTTTACAT-CCCTAAACCCCCCAAAA-AATTTTCT
1 TTTTACTTTCTCCACAAAACTTTTACATCCCCCAAA-CCCCCAAAACAATTTTCA
*
27007907 TTTTACTTTCTCCCCAAA
1 TTTTACTTTCTCCACAAA
27007925 CCCTTAAACA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
53 28 0.46
54 9 0.15
55 24 0.39
ACGTcount: A:0.29, C:0.34, G:0.00, T:0.37
Consensus pattern (54 bp):
TTTTACTTTCTCCACAAAACTTTTACATCCCCCAAACCCCCAAAACAATTTTCA
Found at i:27011281 original size:34 final size:34
Alignment explanation
Indices: 27011243--27011309 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 34
27011233 TCAGTTTAGT
* * *
27011243 TGGGCCTTAGCCCATTATAGTGACAGTATCAGTG
1 TGGGCCCTAGCCCATTACAGTGACAGTAACAGTG
* *
27011277 TGGGCCCTAGCTCATTACAGTGATAGTAACAGT
1 TGGGCCCTAGCCCATTACAGTGACAGTAACAGT
27011310 TCAGACATGC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.28
Consensus pattern (34 bp):
TGGGCCCTAGCCCATTACAGTGACAGTAACAGTG
Found at i:27011619 original size:27 final size:27
Alignment explanation
Indices: 27011584--27011704 Score: 145
Period size: 27 Copynumber: 4.5 Consensus size: 27
27011574 AAGCATACAA
*
27011584 TCATTTTATAACATAGGGGCATAATAG
1 TCATTTTATAACATAGAGGCATAATAG
* **
27011611 TTATTTTATAACATAGAGGCATAACCG
1 TCATTTTATAACATAGAGGCATAATAG
*
27011638 TTATTTTATAACATAGAGGCATAATAG
1 TCATTTTATAACATAGAGGCATAATAG
* ** *
27011665 TCATCTTACCACGT-GAGGGCATAATAG
1 TCATTTTATAACATAGA-GGCATAATAG
27011692 TCATTTTATAACA
1 TCATTTTATAACA
27011705 GTTTGAGGGT
Statistics
Matches: 78, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
26 2 0.03
27 76 0.97
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (27 bp):
TCATTTTATAACATAGAGGCATAATAG
Found at i:27015228 original size:60 final size:60
Alignment explanation
Indices: 27015155--27015275 Score: 242
Period size: 60 Copynumber: 2.0 Consensus size: 60
27015145 ACTGCTTACC
27015155 AGTCCAGACAAACGGTACCCCTTTACGCAACAGTTTAGTTAGAAGTGCAGCAATCAACGG
1 AGTCCAGACAAACGGTACCCCTTTACGCAACAGTTTAGTTAGAAGTGCAGCAATCAACGG
27015215 AGTCCAGACAAACGGTACCCCTTTACGCAACAGTTTAGTTAGAAGTGCAGCAATCAACGG
1 AGTCCAGACAAACGGTACCCCTTTACGCAACAGTTTAGTTAGAAGTGCAGCAATCAACGG
27015275 A
1 A
27015276 AACCCCTCAA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.34, C:0.25, G:0.21, T:0.20
Consensus pattern (60 bp):
AGTCCAGACAAACGGTACCCCTTTACGCAACAGTTTAGTTAGAAGTGCAGCAATCAACGG
Found at i:27022297 original size:23 final size:23
Alignment explanation
Indices: 27022267--27022321 Score: 83
Period size: 23 Copynumber: 2.4 Consensus size: 23
27022257 TCTAAAGTTT
*
27022267 GCATATCATTCTTATTAGGGTTC
1 GCATATCATTCTTAGTAGGGTTC
27022290 GCATATCATTCTTAGTAGGGTTC
1 GCATATCATTCTTAGTAGGGTTC
* *
27022313 ACAAATCAT
1 GCATATCAT
27022322 ACCAAGAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.38
Consensus pattern (23 bp):
GCATATCATTCTTAGTAGGGTTC
Found at i:27022600 original size:15 final size:15
Alignment explanation
Indices: 27022580--27022632 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
27022570 CACACCCTTA
27022580 GGTAGCTCACACAAG
1 GGTAGCTCACACAAG
27022595 GGTAGCT-AGCACAAG
1 GGTAGCTCA-CACAAG
* * * *
27022610 AGTAGATCGCAGAAG
1 GGTAGCTCACACAAG
27022625 GGTAGCTC
1 GGTAGCTC
27022633 GTATAAGGAT
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
14 1 0.03
15 29 0.97
ACGTcount: A:0.32, C:0.21, G:0.32, T:0.15
Consensus pattern (15 bp):
GGTAGCTCACACAAG
Found at i:27054286 original size:27 final size:27
Alignment explanation
Indices: 27054248--27054321 Score: 112
Period size: 27 Copynumber: 2.7 Consensus size: 27
27054238 GGTGACCCCA
27054248 TTCGCCAGGCCTACTAGCGATCCTTAC
1 TTCGCCAGGCCTACTAGCGATCCTTAC
* *
27054275 TTCGCCAGGCCTATTAGTGATCCTTAC
1 TTCGCCAGGCCTACTAGCGATCCTTAC
* *
27054302 TTCGCCAAGCCTACTGGCGA
1 TTCGCCAGGCCTACTAGCGA
27054322 AAACCAACTT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.19, C:0.34, G:0.20, T:0.27
Consensus pattern (27 bp):
TTCGCCAGGCCTACTAGCGATCCTTAC
Found at i:27061741 original size:30 final size:30
Alignment explanation
Indices: 27061705--27061773 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
27061695 AATTGGCAAA
*
27061705 AAAACTCTCAAATTTCTCTTTAAATTTCTC
1 AAAACTCTCAAATTTCTCCTTAAATTTCTC
*
27061735 AAAACTCTCAAATTTTTCCTTAAATTTCTC
1 AAAACTCTCAAATTTCTCCTTAAATTTCTC
*
27061765 AAAGCTCTC
1 AAAACTCTC
27061774 TTTAATTAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.33, C:0.25, G:0.01, T:0.41
Consensus pattern (30 bp):
AAAACTCTCAAATTTCTCCTTAAATTTCTC
Found at i:27063171 original size:18 final size:18
Alignment explanation
Indices: 27063148--27063207 Score: 93
Period size: 18 Copynumber: 3.3 Consensus size: 18
27063138 GCCAGGTGTA
*
27063148 TATCCTAGCCCTTATATG
1 TATCCTAACCCTTATATG
*
27063166 TATCCTAACCCTTACATG
1 TATCCTAACCCTTATATG
27063184 TATCCTAACCCTTATATG
1 TATCCTAACCCTTATATG
*
27063202 TTTCCT
1 TATCCT
27063208 TTTCCCAGTC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.23, C:0.30, G:0.07, T:0.40
Consensus pattern (18 bp):
TATCCTAACCCTTATATG
Found at i:27063692 original size:58 final size:59
Alignment explanation
Indices: 27063582--27063696 Score: 144
Period size: 58 Copynumber: 2.0 Consensus size: 59
27063572 GTACAAACTT
* * ****
27063582 TTTTTATATTGTTTCATTTAATAAAATAAAAGTTGTTTTTAATATTTTAATAGTAAATTA
1 TTTTTATATTGTTTCATTTAATAAAATAAAAGTTCTTTTGAATAAGGCAATAG-AAATTA
*
27063642 TTTTTATATT-TTT-ATTTAATAAAATAGAAGTTCTTTTGAATAAGGCAATAGAAAT
1 TTTTTATATTGTTTCATTTAATAAAATAAAAGTTCTTTTGAATAAGGCAATAGAAAT
27063697 AATGCGACAT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
57 4 0.08
58 31 0.65
59 3 0.06
60 10 0.21
ACGTcount: A:0.39, C:0.03, G:0.09, T:0.50
Consensus pattern (59 bp):
TTTTTATATTGTTTCATTTAATAAAATAAAAGTTCTTTTGAATAAGGCAATAGAAATTA
Found at i:27067087 original size:126 final size:126
Alignment explanation
Indices: 27066862--27067134 Score: 422
Period size: 126 Copynumber: 2.2 Consensus size: 126
27066852 TAAGGCCAAA
**
27066862 CAAGAACTACTATAGAAAAAGAGCGTCCACGTGGGAGATTTTTTCATCAATTTTGCTAACAGTGC
1 CAAGAACTACTGCAGAAAAAGAGCGTCCACGTGGGAGATTTTTTCATCAATTTTGCTAACAGTGC
* * *
27066927 ATCTTGCTTGAACTATTTTTGACACTATTTGTTCAGAACCATCTTCTTAAAATTATTTTTT
66 ATCCTGCTTGAACTATTTTTGACACTATTTGTTCAGAACCATCTTCTCAAAATAATTTTTT
* * *
27066988 CAAGAACTACTGCAGAAAAAGAGTGTCCACGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGC
1 CAAGAACTACTGCAGAAAAAGAGCGTCCACGTGGGAGATTTTTTCATCAATTTTGCTAACAGTGC
* **
27067053 ATCCTGCTTGAAGC-GTTTTTGACACTATTTGTTCAGAACTGTCTTCTCAAAATAATTTTTT
66 ATCCTGCTTGAA-CTATTTTTGACACTATTTGTTCAGAACCATCTTCTCAAAATAATTTTTT
27067114 CAAGAACTACTGCAAGAAAAA
1 CAAGAACTACTGC-AGAAAAA
27067135 AATCATTATT
Statistics
Matches: 134, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
126 126 0.94
127 8 0.06
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (126 bp):
CAAGAACTACTGCAGAAAAAGAGCGTCCACGTGGGAGATTTTTTCATCAATTTTGCTAACAGTGC
ATCCTGCTTGAACTATTTTTGACACTATTTGTTCAGAACCATCTTCTCAAAATAATTTTTT
Found at i:27067229 original size:33 final size:33
Alignment explanation
Indices: 27067189--27067315 Score: 139
Period size: 34 Copynumber: 3.8 Consensus size: 33
27067179 CACAAAGTTA
27067189 TTTTTAAAAA-ACTAAACCCTAATTTAATTAAT
1 TTTTTAAAAACACTAAACCCTAATTTAATTAAT
* * * * *
27067221 TTTCTTAAAAACTCTAAATCATAATTTTATTTAT
1 TTT-TTAAAAACACTAAACCCTAATTTAATTAAT
* * *
27067255 TTATTTAAAACCCCTAAAACCTAATTTAATTAAT
1 TT-TTTAAAAACACTAAACCCTAATTTAATTAAT
**
27067289 TTTAAAAAAACACTAAACCCTAATTTA
1 TTTTTAAAAACACTAAACCCTAATTTA
27067316 TTTTTTAAAA
Statistics
Matches: 76, Mismatches: 16, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
32 3 0.04
33 27 0.36
34 45 0.59
35 1 0.01
ACGTcount: A:0.45, C:0.15, G:0.00, T:0.40
Consensus pattern (33 bp):
TTTTTAAAAACACTAAACCCTAATTTAATTAAT
Found at i:27069024 original size:29 final size:30
Alignment explanation
Indices: 27068992--27069055 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 30
27068982 TTGAACCATT
*
27068992 CATCAAAATTCAAACATCAA-TAAAGT-GTC
1 CATCAAAATACAAACATCAATTAAA-TCGTC
*
27069021 CATCAAAATACAACCATCAATTAAATCGTC
1 CATCAAAATACAAACATCAATTAAATCGTC
27069051 CATCA
1 CATCA
27069056 CTGAAATACA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
29 19 0.61
30 12 0.39
ACGTcount: A:0.47, C:0.25, G:0.05, T:0.23
Consensus pattern (30 bp):
CATCAAAATACAAACATCAATTAAATCGTC
Found at i:27075423 original size:9 final size:9
Alignment explanation
Indices: 27075402--27075677 Score: 74
Period size: 9 Copynumber: 30.6 Consensus size: 9
27075392 ACAGTGCTAA
27075402 ACATAACAT
1 ACATAACAT
27075411 ACAT-ACAT
1 ACATAACAT
27075419 AACAT-ACAT
1 -ACATAACAT
27075428 A-ATATACAT
1 ACATA-ACAT
27075437 ACATAAACATT
1 ACAT-AACA-T
27075448 A-ATAAACA-
1 ACAT-AACAT
27075456 ATCATACACAT
1 A-CATA-ACAT
*
27075467 AACAATAATAT
1 -AC-ATAACAT
* *
27075478 AC--CAGAT
1 ACATAACAT
27075485 A-ATATACAT
1 ACATA-ACAT
27075494 ACATAACAT
1 ACATAACAT
27075503 ACATAA-A-
1 ACATAACAT
27075510 A-ATATACAT
1 ACATA-ACAT
27075519 A-ATATACA-
1 ACATA-ACAT
27075527 ACCATAACAGT
1 A-CATAACA-T
*
27075538 A-ATATA-AC
1 ACATA-ACAT
*
27075546 ACATAACAA
1 ACATAACAT
*
27075555 ACAT-AGA-
1 ACATAACAT
27075562 A-ATATACAT
1 ACATA-ACAT
* *
27075571 AAATAATAT
1 ACATAACAT
27075580 ACATAACATT
1 ACATAACA-T
*
27075590 ACTTAACAT
1 ACATAACAT
27075599 AACAT-ACAT
1 -ACATAACAT
*
27075608 ACA-AATAT
1 ACATAACAT
27075616 ACA-AACAT
1 ACATAACAT
27075624 AACAGTAAACAT
1 -ACA-T-AACAT
27075636 AGCAT-ACAT
1 A-CATAACAT
* *
27075645 ATATAATAGT
1 ACATAACA-T
27075655 ACATAACAT
1 ACATAACAT
*
27075664 ACATAATAT
1 ACATAACAT
27075673 ACATA
1 ACATA
27075678 GCAGTTTAAA
Statistics
Matches: 206, Mismatches: 21, Indels: 80
0.67 0.07 0.26
Matches are distributed among these distances:
6 5 0.02
7 9 0.04
8 30 0.15
9 94 0.46
10 47 0.23
11 10 0.05
12 11 0.05
ACGTcount: A:0.56, C:0.17, G:0.02, T:0.25
Consensus pattern (9 bp):
ACATAACAT
Found at i:27075504 original size:92 final size:92
Alignment explanation
Indices: 27075401--27075631 Score: 239
Period size: 92 Copynumber: 2.5 Consensus size: 92
27075391 AACAGTGCTA
*
27075401 AACATAACATACATACATAACATACATAATATACATACATAAACATTAATA-AACAATCATACAC
1 AACATAACATACATACATAACATACATAATATACA-ACATAAACAGTAATATAAC-A-CATA-AC
* *
27075465 ATAACA-A-TAATATAC-CAGATAATATACAT
62 A-AACATAGAAATATACACAAATAATATACAT
* *
27075494 -ACATAACATACATA-AAAATATACATAATATACAACCAT-AACAGTAATATAACACATAACAAA
1 AACATAACATACATACATAACATACATAATATACAA-CATAAACAGTAATATAACACATAACAAA
*
27075556 CATAGAAATATACATAAATAATATACAT
65 CATAGAAATATACACAAATAATATACAT
* *
27075584 AACATTACTTAACATAACAT-ACATACA-AATATACAAACAT-AACAGTAA
1 AACATAACAT-ACAT-ACATAACATACATAATATAC-AACATAAACAGTAA
27075632 ACATAGCATA
Statistics
Matches: 118, Mismatches: 10, Indels: 21
0.79 0.07 0.14
Matches are distributed among these distances:
87 4 0.03
88 4 0.03
89 11 0.09
90 23 0.19
91 30 0.25
92 36 0.31
93 9 0.08
94 1 0.01
ACGTcount: A:0.57, C:0.17, G:0.02, T:0.24
Consensus pattern (92 bp):
AACATAACATACATACATAACATACATAATATACAACATAAACAGTAATATAACACATAACAAAC
ATAGAAATATACACAAATAATATACAT
Found at i:27075559 original size:65 final size:64
Alignment explanation
Indices: 27075415--27075585 Score: 177
Period size: 65 Copynumber: 2.6 Consensus size: 64
27075405 TAACATACAT
* * * *
27075415 ACATAACATACATAATATACATACATAAACATTAATAAACAATCATACACATAACAATAATATAC
1 ACATAACATACATAATA-ACATACATAAACAAT-ATACATAATCATACACATAACAATAATATAA
27075480 C
64 C
* * *
27075481 AGATAATATACATACATAACATACATAAA-AATATACATAAT-ATACAACCATAACAGTAATATA
1 ACATAACATACATA-ATAACATACATAAACAATATACATAATCATAC-A-CATAACAATAATATA
27075544 AC
63 AC
* * *
27075546 ACATAACAAACATAGA-AATATACATAAATAATATACATAA
1 ACATAACATACATA-ATAACATACATAAACAATATACATAA
27075586 CATTACTTAA
Statistics
Matches: 89, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
63 4 0.04
64 19 0.21
65 40 0.45
66 23 0.26
67 3 0.03
ACGTcount: A:0.58, C:0.16, G:0.02, T:0.24
Consensus pattern (64 bp):
ACATAACATACATAATAACATACATAAACAATATACATAATCATACACATAACAATAATATAAC
Found at i:27075636 original size:65 final size:60
Alignment explanation
Indices: 27075485--27075636 Score: 139
Period size: 65 Copynumber: 2.4 Consensus size: 60
27075475 TATACCAGAT
* * *
27075485 AATATACATACATAACAT-ACATAAAAATATACATAATATACAACCATAACAGTAATATA
1 AATATACAAACATAACATAACATAAAAATATACATAACATACAACCATAACAGTAATACA
* *
27075544 ACACATAACAAACATAGAAATATACATAAATAATATACATAACATTACTTAA-CATAACA-TACA
1 A-ATAT-ACAAACATA-ACATA-ACATAAA-AATATACATAACA-TAC--AACCATAACAGTA-A
27075607 TACA
57 TACA
27075611 AATATACAAACATAACAGTAAACATA
1 AATATACAAACATAACA-T-AACATA
27075637 GCATACATAT
Statistics
Matches: 74, Mismatches: 7, Indels: 18
0.75 0.07 0.18
Matches are distributed among these distances:
59 1 0.01
60 3 0.04
61 8 0.11
62 3 0.04
64 9 0.12
65 27 0.36
66 9 0.12
67 12 0.16
68 2 0.03
ACGTcount: A:0.58, C:0.16, G:0.02, T:0.24
Consensus pattern (60 bp):
AATATACAAACATAACATAACATAAAAATATACATAACATACAACCATAACAGTAATACA
Found at i:27075664 original size:23 final size:25
Alignment explanation
Indices: 27075632--27075678 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 25
27075622 ATAACAGTAA
*
27075632 ACATAGCATACAT-ATATA-ATAGT
1 ACATAACATACATAATATACATAGT
27075655 ACATAACATACATAATATACATAG
1 ACATAACATACATAATATACATAG
27075679 CAGTTTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 12 0.57
24 5 0.24
25 4 0.19
ACGTcount: A:0.51, C:0.15, G:0.06, T:0.28
Consensus pattern (25 bp):
ACATAACATACATAATATACATAGT
Found at i:27076323 original size:21 final size:22
Alignment explanation
Indices: 27076297--27076349 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
27076287 GATATATGTC
*
27076297 ATATATATATGTTA-ACTTAAT
1 ATATATATATGTTATAATTAAT
*
27076318 ATATATTTATGTTATAATTAAT
1 ATATATATATGTTATAATTAAT
*
27076340 AAATAGTATA
1 ATATA-TATA
27076350 AATGTATGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 13 0.50
22 10 0.38
23 3 0.12
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.47
Consensus pattern (22 bp):
ATATATATATGTTATAATTAAT
Found at i:27076357 original size:29 final size:30
Alignment explanation
Indices: 27076325--27076381 Score: 75
Period size: 29 Copynumber: 1.9 Consensus size: 30
27076315 AATATATATT
27076325 TATGTTATAATTA-ATAA-ATAGT-ATAAATG
1 TATG-TAT-ATTATATAATATAGTAATAAATG
27076354 TATGTATATTATATAATATAGTAATAAA
1 TATGTATATTATATAATATAGTAATAAA
27076382 ATGAAAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
27 4 0.16
28 7 0.28
29 9 0.36
30 5 0.20
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.42
Consensus pattern (30 bp):
TATGTATATTATATAATATAGTAATAAATG
Found at i:27076668 original size:36 final size:36
Alignment explanation
Indices: 27076627--27076698 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
27076617 TTTAGTATTG
*
27076627 TTTAGTATTTTAGATGTTGTCATTGTTGAGCAGTTT
1 TTTAGTATTCTAGATGTTGTCATTGTTGAGCAGTTT
*
27076663 TTTAGTATTCTAGATGTTGTCATTGTTGAGTAGTTT
1 TTTAGTATTCTAGATGTTGTCATTGTTGAGCAGTTT
27076699 AAGTATTAGG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.19, C:0.06, G:0.22, T:0.53
Consensus pattern (36 bp):
TTTAGTATTCTAGATGTTGTCATTGTTGAGCAGTTT
Found at i:27078428 original size:20 final size:21
Alignment explanation
Indices: 27078389--27078429 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
27078379 TATTTTGGCA
* *
27078389 TGTTTTGAGTATGTTTAAATG
1 TGTTTTGAATATGGTTAAATG
27078410 TGTTTTGAATA-GGTTAAATG
1 TGTTTTGAATATGGTTAAATG
27078430 GTTGGTAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (21 bp):
TGTTTTGAATATGGTTAAATG
Found at i:27079180 original size:83 final size:83
Alignment explanation
Indices: 27079040--27079195 Score: 258
Period size: 83 Copynumber: 1.9 Consensus size: 83
27079030 GCTTGCGATG
* * *
27079040 AAATTAAATGTTTTGATTGGTTAGTAATGCCCATGACCCTAATCTGACGATGTAGAGGGGTTAGG
1 AAATTAAATGTTTTGATTGGTTAGTAATGCCCATGACCCTAATCTAACAATGGAGAGGGGTTAGG
27079105 GGTGTTACATTTAGTTTA
66 GGTGTTACATTTAGTTTA
* * *
27079123 AAATTAAATGTTTTGATTGGTTAGTAATGCCCGTGACCCTAATTTAATAATGGAGAGGGGTTAGG
1 AAATTAAATGTTTTGATTGGTTAGTAATGCCCATGACCCTAATCTAACAATGGAGAGGGGTTAGG
27079188 GGTGTTAC
66 GGTGTTAC
27079196 GGCAAAATAC
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
83 67 1.00
ACGTcount: A:0.28, C:0.10, G:0.26, T:0.35
Consensus pattern (83 bp):
AAATTAAATGTTTTGATTGGTTAGTAATGCCCATGACCCTAATCTAACAATGGAGAGGGGTTAGG
GGTGTTACATTTAGTTTA
Found at i:27081047 original size:28 final size:28
Alignment explanation
Indices: 27081013--27081184 Score: 258
Period size: 28 Copynumber: 6.1 Consensus size: 28
27081003 GTGATAGTAC
27081013 AGTGTGGGCCTTAGCCCAATACAGTAAT
1 AGTGTGGGCCTTAGCCCAATACAGTAAT
*
27081041 AGTGTGGGCCTTAGCCCAATACAGTAAC
1 AGTGTGGGCCTTAGCCCAATACAGTAAT
27081069 AGTGTGGGCCTTAGCCCAATACAG-AAT
1 AGTGTGGGCCTTAGCCCAATACAGTAAT
* *
27081096 CAGTGTGGGCCTTGGCCTAATACAGTAAT
1 -AGTGTGGGCCTTAGCCCAATACAGTAAT
*
27081125 AATGTGGGCCTTAGCCCAATACAG-AAT
1 AGTGTGGGCCTTAGCCCAATACAGTAAT
* *
27081152 CAGTGTGGGCCTTAGTCCAATACAGTAAC
1 -AGTGTGGGCCTTAGCCCAATACAGTAAT
27081181 AGTG
1 AGTG
27081185 CAGTGTAATA
Statistics
Matches: 130, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
27 5 0.04
28 120 0.92
29 5 0.04
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (28 bp):
AGTGTGGGCCTTAGCCCAATACAGTAAT
Found at i:27081079 original size:56 final size:56
Alignment explanation
Indices: 27081011--27081184 Score: 287
Period size: 56 Copynumber: 3.1 Consensus size: 56
27081001 TAGTGATAGT
27081011 ACAGTGTGGGCCTTAGCCCAATACAGTAAT-AGTGTGGGCCTTAGCCCAATACAGTA
1 ACAGTGTGGGCCTTAGCCCAATACAG-AATCAGTGTGGGCCTTAGCCCAATACAGTA
* *
27081067 ACAGTGTGGGCCTTAGCCCAATACAGAATCAGTGTGGGCCTTGGCCTAATACAGTA
1 ACAGTGTGGGCCTTAGCCCAATACAGAATCAGTGTGGGCCTTAGCCCAATACAGTA
* * *
27081123 ATAATGTGGGCCTTAGCCCAATACAGAATCAGTGTGGGCCTTAGTCCAATACAGTA
1 ACAGTGTGGGCCTTAGCCCAATACAGAATCAGTGTGGGCCTTAGCCCAATACAGTA
27081179 ACAGTG
1 ACAGTG
27081185 CAGTGTAATA
Statistics
Matches: 108, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
55 3 0.03
56 105 0.97
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (56 bp):
ACAGTGTGGGCCTTAGCCCAATACAGAATCAGTGTGGGCCTTAGCCCAATACAGTA
Found at i:27081618 original size:27 final size:27
Alignment explanation
Indices: 27081601--27081791 Score: 260
Period size: 27 Copynumber: 7.1 Consensus size: 27
27081591 GGGTATAACA
27081601 GTCATTTTACCCTATAGGGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTCG
* *
27081628 GTCATATTACCCTATAGGGGTATTTTG
1 GTCATTTTACCCTATAGGGGTATTTCG
* *
27081655 GTCATTTTACCCTATGGGGGTATTTTG
1 GTCATTTTACCCTATAGGGGTATTTCG
27081682 GTCATTTTACCCTAT-GGGGTTATTTCG
1 GTCATTTTACCCTATAGGGG-TATTTCG
* *
27081709 GTCATTCTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTCG
* * *
27081736 ATCATTTTACCTTATAGTGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTCG
*
27081763 GTCATTTTACCCTAT-GACGGTATTTCG
1 GTCATTTTACCCTATAG-GGGTATTTCG
27081790 GT
1 GT
27081792 ATAGATATCG
Statistics
Matches: 147, Mismatches: 14, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
26 5 0.03
27 138 0.94
28 4 0.03
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.42
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTTCG
Found at i:27083318 original size:21 final size:21
Alignment explanation
Indices: 27083250--27083319 Score: 58
Period size: 21 Copynumber: 3.4 Consensus size: 21
27083240 CACTTATTAA
* *
27083250 AATC-TTTTAAAATAATTTTT
1 AATCATTTTAGAATAATTTTG
* *
27083270 CATCATTTT-GAA-AACTTTGG
1 AATCATTTTAGAATAA-TTTTG
27083290 ACA-CATTTTAGAATAATTTTG
1 A-ATCATTTTAGAATAATTTTG
27083311 AATCATTTT
1 AATCATTTT
27083320 CAAGGTATTT
Statistics
Matches: 38, Mismatches: 6, Indels: 11
0.69 0.11 0.20
Matches are distributed among these distances:
19 2 0.05
20 15 0.39
21 19 0.50
22 2 0.05
ACGTcount: A:0.36, C:0.10, G:0.07, T:0.47
Consensus pattern (21 bp):
AATCATTTTAGAATAATTTTG
Found at i:27085193 original size:6 final size:6
Alignment explanation
Indices: 27085182--27085330 Score: 298
Period size: 6 Copynumber: 24.8 Consensus size: 6
27085172 TGATTGAATG
27085182 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
27085230 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
27085278 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
27085326 ATATG
1 ATATG
27085331 CTATTACAGG
Statistics
Matches: 143, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 143 1.00
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
ATATGT
Found at i:27088002 original size:21 final size:20
Alignment explanation
Indices: 27087953--27088003 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
27087943 TTGTACAGAG
*
27087953 GTATAGATACCTTTTATAAG
1 GTATAGATACCTTTTATAAA
* *
27087973 GTATTGATACCTTTTGTTAAA
1 GTATAGATACCTTTT-ATAAA
*
27087994 GTATCGATAC
1 GTATAGATAC
27088004 TTGACCCCTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 14 0.54
21 12 0.46
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.41
Consensus pattern (20 bp):
GTATAGATACCTTTTATAAA
Found at i:27090968 original size:20 final size:18
Alignment explanation
Indices: 27090921--27091012 Score: 58
Period size: 17 Copynumber: 5.4 Consensus size: 18
27090911 CAAGGTAAAC
27090921 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
27090938 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
*
27090958 ATTAAATTAATA--AAAT
1 ATTAAATTAATATTTAAT
* *
27090974 ACT--ATTAAGA--TAAGT
1 ATTAAATTAATATTTAA-T
27090989 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
27091006 ATTAAAT
1 ATTAAAT
27091013 CTATTAAAAT
Statistics
Matches: 60, Mismatches: 5, Indels: 20
0.71 0.06 0.24
Matches are distributed among these distances:
14 8 0.13
15 3 0.05
16 6 0.10
17 21 0.35
18 4 0.07
19 3 0.05
20 15 0.25
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.41
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:27102403 original size:21 final size:20
Alignment explanation
Indices: 27102366--27102416 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
27102356 CTAATTTAGT
*
27102366 GATTAATAATGAATTAATTAAA
1 GATTAATTAT-AATTAATT-AA
27102388 GATTAATTATAATTAATTAA
1 GATTAATTATAATTAATTAA
*
27102408 GGTTAATTA
1 GATTAATTA
27102417 ATCATTAATC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 10 0.37
21 8 0.30
22 9 0.33
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (20 bp):
GATTAATTATAATTAATTAA
Found at i:27102423 original size:21 final size:21
Alignment explanation
Indices: 27102366--27102425 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
27102356 CTAATTTAGT
*
27102366 GATTAATAATGAATTAATTAAA
1 GATTAATTAT-AATTAATTAAA
27102388 GATTAATTATAATTAATT-AA
1 GATTAATTATAATTAATTAAA
* *
27102408 GGTTAATTAATCATTAAT
1 GATTAATT-ATAATTAAT
27102426 CATATGATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 9 0.26
21 16 0.47
22 9 0.26
ACGTcount: A:0.48, C:0.02, G:0.08, T:0.42
Consensus pattern (21 bp):
GATTAATTATAATTAATTAAA
Found at i:27103594 original size:49 final size:49
Alignment explanation
Indices: 27103541--27103647 Score: 162
Period size: 49 Copynumber: 2.2 Consensus size: 49
27103531 TCAAACAGTA
*
27103541 AAAACCATTGTTACCAGG-CAACCTAGGATGGTAAAGTGTGTATATAGTG
1 AAAACCATCGTTACC-GGACAACCTAGGATGGTAAAGTGTGTATATAGTG
* * *
27103590 AAAACCATCGTTGCCGGACAACCTGGGATGGTAAAGTGTGTATATAGTT
1 AAAACCATCGTTACCGGACAACCTAGGATGGTAAAGTGTGTATATAGTG
27103639 AAAACCATC
1 AAAACCATC
27103648 ATTGTCAGGC
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
48 2 0.04
49 51 0.96
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (49 bp):
AAAACCATCGTTACCGGACAACCTAGGATGGTAAAGTGTGTATATAGTG
Found at i:27125247 original size:23 final size:23
Alignment explanation
Indices: 27125216--27125287 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 23
27125206 TGATAAGATC
* *
27125216 TATTATGTGATGCCTTTTTGGCA
1 TATTTTGTGATGCCTTTGTGGCA
**
27125239 TATTTTGTGATGCCTTTGTGGTG
1 TATTTTGTGATGCCTTTGTGGCA
*
27125262 TA-TTTGTGATGTCTTTGTGGCA
1 TATTTTGTGATGCCTTTGTGGCA
27125284 TATT
1 TATT
27125288 CTATAACGCC
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
22 19 0.46
23 22 0.54
ACGTcount: A:0.14, C:0.10, G:0.25, T:0.51
Consensus pattern (23 bp):
TATTTTGTGATGCCTTTGTGGCA
Found at i:27125256 original size:11 final size:11
Alignment explanation
Indices: 27125242--27125280 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
27125232 TTTGGCATAT
*
27125242 TTTGTGATGCC
1 TTTGTGATGTC
* *
27125253 TTTGTGGTGTA
1 TTTGTGATGTC
27125264 TTTGTGATGTC
1 TTTGTGATGTC
27125275 TTTGTG
1 TTTGTG
27125281 GCATATTCTA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.08, C:0.08, G:0.31, T:0.54
Consensus pattern (11 bp):
TTTGTGATGTC
Found at i:27125270 original size:22 final size:22
Alignment explanation
Indices: 27125216--27125287 Score: 90
Period size: 22 Copynumber: 3.2 Consensus size: 22
27125206 TGATAAGATC
*
27125216 TATTATGTGATGCCTTTTTGGCA
1 TATT-TGTGATGCCTTTGTGGCA
**
27125239 TATTTTGTGATGCCTTTGTGGTG
1 TA-TTTGTGATGCCTTTGTGGCA
*
27125262 TATTTGTGATGTCTTTGTGGCA
1 TATTTGTGATGCCTTTGTGGCA
27125284 TATT
1 TATT
27125288 CTATAACGCC
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
22 21 0.50
23 19 0.45
24 2 0.05
ACGTcount: A:0.14, C:0.10, G:0.25, T:0.51
Consensus pattern (22 bp):
TATTTGTGATGCCTTTGTGGCA
Found at i:27127771 original size:19 final size:19
Alignment explanation
Indices: 27127747--27127857 Score: 177
Period size: 19 Copynumber: 5.8 Consensus size: 19
27127737 AATCTTCGAG
27127747 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
27127766 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* **
27127785 AATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
27127804 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
27127823 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
27127842 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
27127858 AGATATGATT
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 82 1.00
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:27127797 original size:38 final size:38
Alignment explanation
Indices: 27127754--27127857 Score: 199
Period size: 38 Copynumber: 2.7 Consensus size: 38
27127744 GAGGATATGC
27127754 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
*
27127792 AATCTTAGATATGATATGCAATCTTAGATATGATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
27127830 AATCTTAGATATGATATGCAATCTTAGA
1 AATCTTAGATATGATATGCAATCTTAGA
27127858 AGATATGATT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 65 1.00
ACGTcount: A:0.40, C:0.09, G:0.12, T:0.38
Consensus pattern (38 bp):
AATCTTAGATATGATATGCAATCTTAGATATAATATAT
Found at i:27127821 original size:57 final size:55
Alignment explanation
Indices: 27127737--27127864 Score: 175
Period size: 57 Copynumber: 2.3 Consensus size: 55
27127727 ATGGAAACAT
* * * *
27127737 AATCTTCGAGGATATGCAATCTTAGATATGATATGCAATCTTAGATATAATATAT
1 AATCTTAGAAGATATGCAATCTTAGATATGATATACAATCTTAGATATAATATAC
* * *
27127792 AATCTTAGATATGATATGCAATCTTAGATATGATATATAATCTTAGATATGATATGC
1 AATCTTAGA-A-GATATGCAATCTTAGATATGATATACAATCTTAGATATAATATAC
27127849 AATCTTAGAAGATATG
1 AATCTTAGAAGATATG
27127865 ATTTTGTAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
55 14 0.22
56 1 0.02
57 49 0.77
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.37
Consensus pattern (55 bp):
AATCTTAGAAGATATGCAATCTTAGATATGATATACAATCTTAGATATAATATAC
Found at i:27127883 original size:22 final size:21
Alignment explanation
Indices: 27127747--27127883 Score: 114
Period size: 19 Copynumber: 6.9 Consensus size: 21
27127737 AATCTTCGAG
*
27127747 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
27127766 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
* *
27127785 AATATATAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
27127804 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
27127823 GATATATAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
27127842 GATATGCAATCTTAGAAGATAT
1 GATATGTAATCTTAG-AGATAT
*
27127864 GATTTTGTAATCTTAGAGAT
1 GA-TATGTAATCTTAGAGAT
27127884 TTAATTTGTA
Statistics
Matches: 102, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
19 79 0.77
22 12 0.12
23 11 0.11
ACGTcount: A:0.39, C:0.08, G:0.15, T:0.39
Consensus pattern (21 bp):
GATATGTAATCTTAGAGATAT
Found at i:27135492 original size:132 final size:132
Alignment explanation
Indices: 27133488--27135454 Score: 3106
Period size: 132 Copynumber: 15.0 Consensus size: 132
27133478 TTAAAAATAG
* * * * *
27133488 CAGATCTTGTCTCCCTAAGCAGTAGCGGAACAGATCGAAGATGGTGGATTTTATCTCCCTGTGGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGT
*
27133553 TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGAT
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGAT
27133618 TT
131 TT
* * * *
27133620 CAGGTCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGAAGATGACGGATTTTACCTCCATGTGGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGT
*
27133685 TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGAT
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGAT
27133750 TT
131 TT
* * * * * *
27133752 TAGGTCTTATCTCCCTAAGCAATAGCGGAGCAGATCGAAGATTGCGGATTTTACCTCTCTGTGGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGT
*
27133817 TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCTCTGGG-AACAGTGGAATAGATTGAAGAT
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGAT
27133881 TT
131 TT
* * * *
27133883 TAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGACGGATTTTACCTCCTTATGGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGT
* *
27133948 TACAGTGGAGTACATTGCAGCCAGTAATTCTACTTTCCTGGGCAACAGTGGAATAGATTGAAGAT
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGAT
27134013 TT
131 TT
* *
27134015 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATTTTACCTCCCTATGGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGT
* * * *
27134080 TATAGTGGAGTATATTGAAGCCAGTAATTCTACTTCCCTGGGCAATAGTGGAATAGATTGATGAT
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGAT
27134145 TT
131 TT
* *
27134147 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGT
27134212 TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGAT
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGAT
27134277 TT
131 TT
* *
27134279 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGT
* * *
27134344 TACAGTTGAGTACATTGAAGCCAGTAATTTTACTTCCTTGGGCAACAGTGGAATAGATTGAAGAT
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGAT
27134409 TT
131 TT
** * * * *
27134411 CAGATCTTATCTCCCTAAGCAGTAGTAAAGTAGATCGAGGATGGTGGATTTTACCTCCCTATGGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGT
* * *
27134476 TATACTGGAGTATATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGAT
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGAT
27134541 TT
131 TT
*
27134543 CAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGT
* * *
27134608 TACAGTTGAGTACATTGAAGCCAGTAATTTTACTTCCTTGGGCAACAGTGGAATAGATTGAAGAT
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGAT
27134673 TT
131 TT
** * * * *
27134675 CAGATCTTATCTCCCTAAGCAGTAGTAAAGTAGATCGAGGATGGTGGATTTTACCTCCCTATGGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGT
* * *
27134740 TATACTGGAGTATATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGAT
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGAT
27134805 TT
131 TT
*
27134807 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTATGGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGT
*
27134872 TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCTACAGTGGAATAGATTGAAGAT
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGAT
27134937 TT
131 TT
* * * *
27134939 TAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTATGGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGT
*
27135004 TACAGTGGAGTATATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGT-G----G--TGAAGAT
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGAT
27135062 TT
131 TT
*
27135064 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTATGGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGT
*
27135129 TACAGTGGAGTATATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGAT
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGAT
27135194 TT
131 TT
* * *
27135196 CAGATCTTATCTCCCTAAGCAATAGTGGAGTAGATCAAAGATGGCGGATTTTACCTCCCTGTGGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGT
* * *
27135261 TACAGTTGAGTACATTGAAGCCAGTAATTTTACTTCCTTGGGCAACAGTGGAATAGATTGAAGAT
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGAT
27135326 TT
131 TT
* * * *
27135328 TAGATCTTATCTCCCTAAACAGTAGTGGAGTAGATCGAAGATGGTGGATTTTACCTCCCTGTGGT
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGT
* * * * * *
27135393 TACAGTGGAGTACATTGAAGCTAGTAATCCTA-TCTCCCTGGTCAGCAATGGAATAGGTTGAA
66 TACAGTGGAGTACATTGAAGCCAGTAATTCTACT-TCCCTGGGCAACAGTGGAATAGATTGAA
27135455 AATCGTGAAC
Statistics
Matches: 1700, Mismatches: 126, Indels: 18
0.92 0.07 0.01
Matches are distributed among these distances:
125 120 0.07
126 1 0.00
127 1 0.00
130 1 0.00
131 122 0.07
132 1455 0.86
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (132 bp):
CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGT
TACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGAT
TT
Found at i:27135791 original size:44 final size:44
Alignment explanation
Indices: 27135694--27135805 Score: 136
Period size: 44 Copynumber: 2.5 Consensus size: 44
27135684 GAAGAAAGCA
* *
27135694 AATCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTAAAGCCAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAACCAAT
* * * *
27135738 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACA-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAACCA-AT
* *
27135782 GATCTTATCTCTCTGAAGTTGCAG
1 AATCTTATCTCCCTGAAGTTGCAG
27135806 AGAGTAGATC
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
44 57 0.98
45 1 0.02
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAACCAAT
Found at i:27136272 original size:19 final size:19
Alignment explanation
Indices: 27136248--27136358 Score: 168
Period size: 19 Copynumber: 5.8 Consensus size: 19
27136238 AATCTTCGAG
27136248 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
27136267 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* **
27136286 AATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
27136305 GATATGCAATCTGAGATAT
1 GATATGCAATCTTAGATAT
**
27136324 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
27136343 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
27136359 AGATATGATT
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 80 1.00
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:27136298 original size:38 final size:38
Alignment explanation
Indices: 27136255--27136358 Score: 190
Period size: 38 Copynumber: 2.7 Consensus size: 38
27136245 GAGGATATGC
27136255 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
* *
27136293 AATCTTAGATATGATATGCAATCTGAGATATGATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
27136331 AATCTTAGATATGATATGCAATCTTAGA
1 AATCTTAGATATGATATGCAATCTTAGA
27136359 AGATATGATT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 63 1.00
ACGTcount: A:0.40, C:0.09, G:0.13, T:0.38
Consensus pattern (38 bp):
AATCTTAGATATGATATGCAATCTTAGATATAATATAT
Found at i:27136322 original size:57 final size:55
Alignment explanation
Indices: 27136238--27136365 Score: 166
Period size: 57 Copynumber: 2.3 Consensus size: 55
27136228 ATGGAAACAT
* * * * *
27136238 AATCTTCGAGGATATGCAATCTTAGATATGATATGCAATCTTAGATATAATATAT
1 AATCTTAGAAGATATGCAATCTGAGATATGATATACAATCTTAGATATAATATAC
* * *
27136293 AATCTTAGATATGATATGCAATCTGAGATATGATATATAATCTTAGATATGATATGC
1 AATCTTAGA-A-GATATGCAATCTGAGATATGATATACAATCTTAGATATAATATAC
27136350 AATCTTAGAAGATATG
1 AATCTTAGAAGATATG
27136366 ATTTTGTAAT
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
55 14 0.22
56 1 0.02
57 48 0.76
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (55 bp):
AATCTTAGAAGATATGCAATCTGAGATATGATATACAATCTTAGATATAATATAC
Found at i:27136384 original size:22 final size:21
Alignment explanation
Indices: 27136248--27136384 Score: 114
Period size: 19 Copynumber: 6.9 Consensus size: 21
27136238 AATCTTCGAG
*
27136248 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
27136267 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
* *
27136286 AATATATAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
27136305 GATATGCAATC-T-GAGATAT
1 GATATGTAATCTTAGAGATAT
*
27136324 GATATATAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
27136343 GATATGCAATCTTAGAAGATAT
1 GATATGTAATCTTAG-AGATAT
*
27136365 GATTTTGTAATCTTAGAGAT
1 GA-TATGTAATCTTAGAGAT
27136385 TTAATTTGTA
Statistics
Matches: 100, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
18 1 0.01
19 75 0.75
20 1 0.01
22 12 0.12
23 11 0.11
ACGTcount: A:0.39, C:0.08, G:0.15, T:0.38
Consensus pattern (21 bp):
GATATGTAATCTTAGAGATAT
Found at i:27138314 original size:119 final size:117
Alignment explanation
Indices: 27138105--27138342 Score: 368
Period size: 119 Copynumber: 2.0 Consensus size: 117
27138095 CATGGATGTT
*
27138105 AACATCCTTTTGGAAAGAATATAATTGATATATGAATTTGATTCATACAAAATATTAGTTGTATA
1 AACATCCTTTTGGAAAGAATATAATTGATATATGAATTTGATTCATACAAAATATTAATTGTATA
* * **
27138170 TATTTTACTGAATTTATTAATATAAATAGTTATATGAATTAATTTTGGTCAA
66 TATTTTACCGAATTTATTAATATAAACAGTTATATGAATTAATTTCAGTCAA
* * * *
27138222 AACATTCTTTTGGGAAGAATATAATTAATATATATTAATTTGATTCATACAAAATATTAATTGTA
1 AACATCCTTTTGGAAAGAATATAATT--GATATATGAATTTGATTCATACAAAATATTAATTGTA
*
27138287 TATATTTTACCGAATTTATTAATATAAACAGTTATATTAATTAATTTCAGTCAA
64 TATATTTTACCGAATTTATTAATATAAACAGTTATATGAATTAATTTCAGTCAA
27138341 AA
1 AA
27138343 TATAAAAGAC
Statistics
Matches: 109, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
117 24 0.22
119 85 0.78
ACGTcount: A:0.42, C:0.07, G:0.09, T:0.42
Consensus pattern (117 bp):
AACATCCTTTTGGAAAGAATATAATTGATATATGAATTTGATTCATACAAAATATTAATTGTATA
TATTTTACCGAATTTATTAATATAAACAGTTATATGAATTAATTTCAGTCAA
Found at i:27140326 original size:18 final size:19
Alignment explanation
Indices: 27140305--27140345 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
27140295 CCACAAGGAC
*
27140305 AAGGACAAAGG-AAAGGCT
1 AAGGACAAAGGTAAAGCCT
*
27140323 AAGG-CTAAGGTAAAGCCT
1 AAGGACAAAGGTAAAGCCT
27140341 AAGGA
1 AAGGA
27140346 AAATATCAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.46, C:0.12, G:0.32, T:0.10
Consensus pattern (19 bp):
AAGGACAAAGGTAAAGCCT
Found at i:27141693 original size:50 final size:50
Alignment explanation
Indices: 27141618--27141858 Score: 365
Period size: 50 Copynumber: 4.8 Consensus size: 50
27141608 CATTTGGGTA
*
27141618 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
27141668 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* *
27141718 AAGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* ** * *
27141768 GAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* ** * *
27141818 GAGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGG
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGG
27141859 TAGTATAGGA
Statistics
Matches: 174, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 174 1.00
ACGTcount: A:0.27, C:0.22, G:0.31, T:0.21
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
Found at i:27143691 original size:160 final size:159
Alignment explanation
Indices: 27143400--27143709 Score: 611
Period size: 160 Copynumber: 1.9 Consensus size: 159
27143390 AGAAGGAAAA
27143400 AGAAAACGAAGCATTCGCTTCAGGTATTTATATTATTGATATTAATTTATCAACATCTACTTCTT
1 AGAAAACGAAGCATTCGCTTCAGGTATTTATATTATTGATATTAATTTATCAACATCTACTTCTT
27143465 GGTATTAGATACCGGATATGGTTCTCATATTTGTACCTCTGTATAGGAACTGCAAAGAAGTAGGA
66 GGTATTAGATACCGGATATGGTTCTCATATTTGTACCTCTGTATAGGAACTGCAAAGAAGTAGGA
27143530 ATTTGACTAAAGGAGATTTGTCAAGAAGG
131 ATTTGACTAAAGGAGATTTGTCAAGAAGG
27143559 AGAAAACGAAGCATTCGCTTCAGGTATTTATATTATTGATATTAATTTATCAACATCTACTTCTT
1 AGAAAACGAAGCATTCGCTTCAGGTATTTATATTATTGATATTAATTTATCAACATCTACTTCTT
27143624 GGGTATTAGATACCGGATATGGTTCTCATATTTGTACCTCTGTATAGGAACTGCAAAGAAGTAGG
66 -GGTATTAGATACCGGATATGGTTCTCATATTTGTACCTCTGTATAGGAACTGCAAAGAAGTAGG
27143689 AATTTGACTAAAGGAGATTTG
130 AATTTGACTAAAGGAGATTTG
27143710 GACTTGCAAG
Statistics
Matches: 150, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
159 65 0.43
160 85 0.57
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.35
Consensus pattern (159 bp):
AGAAAACGAAGCATTCGCTTCAGGTATTTATATTATTGATATTAATTTATCAACATCTACTTCTT
GGTATTAGATACCGGATATGGTTCTCATATTTGTACCTCTGTATAGGAACTGCAAAGAAGTAGGA
ATTTGACTAAAGGAGATTTGTCAAGAAGG
Found at i:27147936 original size:138 final size:138
Alignment explanation
Indices: 27147733--27148291 Score: 854
Period size: 138 Copynumber: 4.1 Consensus size: 138
27147723 GAGAACATAG
*
27147733 ATATAATTAATATATGAGTTTGATTCATACAAAAATATTAATTGTATATATTTTACCGAATTTAT
1 ATATAATTAATATATGAATTTGATTCATAC-AAAATATTAATTGTATATATTTTACCGAATTTAT
* * *
27147798 TAATATAAACATTTATATTAATTGATTTCGGTCAAAATATAAAAGACATGGAAATTAATGTTCTT
65 TAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTT
27147863 TTGGAAAGA
130 TTGGAAAGA
* *
27147872 ATATAATTAATATATGAATTTGATTCATACAAAATATTAGTTGTATATATTTTACCGGATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
* * **
27147937 AATATAAACAGTTATGTTAATTAGTTTCTATCAAAATATAAAAGACATGGAAATTAATATTCTTT
66 AATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTT
27148002 TGGAAAGA
131 TGGAAAGA
27148010 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
** * * *
27148075 AATATAAGGAGTTATATTAATTAATTTTGGTCAAAATATAAAAGATATGGAAAATAATATTCTTT
66 AATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTT
27148140 TGGAAAGA
131 TGGAAAGA
* *
27148148 ATATAATCAATATATGAATTTGATTCATACAAAATATTAATTGCATATATTTTACCGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
** ** * *
27148213 AATATAAAC-GATTATATTAATTAATTT-TTTTTAAATATAAAAAACA-CGAAATTAATATTCTT
66 AATATAAACAG-TTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTT
*
27148275 TTGGAAATA
130 TTGGAAAGA
*
27148284 ATACAATT
1 ATATAATT
27148292 CCTTTTTTCT
Statistics
Matches: 383, Mismatches: 36, Indels: 5
0.90 0.08 0.01
Matches are distributed among these distances:
136 28 0.07
137 14 0.04
138 312 0.81
139 29 0.08
ACGTcount: A:0.43, C:0.06, G:0.09, T:0.41
Consensus pattern (138 bp):
ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
AATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTT
TGGAAAGA
Found at i:27148403 original size:74 final size:75
Alignment explanation
Indices: 27148267--27148490 Score: 294
Period size: 74 Copynumber: 3.0 Consensus size: 75
27148257 CACGAAATTA
* * * *
27148267 ATATTCTTTTGGAAATAATACAATTCCTTTTTTCTAACTTTCCATTTGTATTCTCTAATAATAAA
1 ATATTCTTTTGGAAATAATATAATTCC-TTTTTCTAACTTTCCATTTGTCTTTTCTATTAATAAA
27148332 TGAATAATCCT
65 TGAATAATCCT
*
27148343 ATATT-TTTTGGAAATAATATAATTCGTTTTTCTAACTTTCCATTTGTCTTTTCTATTAAT-AAT
1 ATATTCTTTTGGAAATAATATAATTCCTTTTTCTAACTTTCCATTTGTCTTTTCTATTAATAAAT
27148406 GGAATAATCCT
66 -GAATAATCCT
* * * * *
27148417 ATATTCTTTTGG-AAGAATATAATTCCTTTTTCTAACTTTCTATTTCTCGTCTT-TATTAATAAG
1 ATATTCTTTTGGAAATAATATAATTCCTTTTTCTAACTTTCCATTTGTC-TTTTCTATTAATAAA
*
27148480 GGAATAATCCT
65 TGAATAATCCT
27148491 GGTTTTCCTT
Statistics
Matches: 132, Mismatches: 12, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
73 3 0.02
74 95 0.72
75 29 0.22
76 5 0.04
ACGTcount: A:0.30, C:0.14, G:0.08, T:0.48
Consensus pattern (75 bp):
ATATTCTTTTGGAAATAATATAATTCCTTTTTCTAACTTTCCATTTGTCTTTTCTATTAATAAAT
GAATAATCCT
Found at i:27151763 original size:13 final size:13
Alignment explanation
Indices: 27151745--27151787 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
27151735 CAAACCCGAC
27151745 CTAGATGTTATGG
1 CTAGATGTTATGG
** *
27151758 CTAGATTGAGAAGG
1 CTAGA-TGTTATGG
27151772 CTAGATGTTATGG
1 CTAGATGTTATGG
27151785 CTA
1 CTA
27151788 AGCTAACTTA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
13 13 0.57
14 10 0.43
ACGTcount: A:0.28, C:0.09, G:0.30, T:0.33
Consensus pattern (13 bp):
CTAGATGTTATGG
Found at i:27156514 original size:49 final size:49
Alignment explanation
Indices: 27156442--27156775 Score: 531
Period size: 49 Copynumber: 7.0 Consensus size: 49
27156432 CTTCGGGACT
* * * * *
27156442 TATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* * *
27156489 TGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
27156538 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
27156585 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
27156634 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGG-CC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
27156680 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
27156729 TATCACATATATATACAC-TTCACATTCATCACATCGGCCATTAGGCC
1 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
27156776 TTACTATCAT
Statistics
Matches: 268, Mismatches: 12, Indels: 13
0.91 0.04 0.04
Matches are distributed among these distances:
46 8 0.03
47 90 0.34
48 68 0.25
49 102 0.38
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (49 bp):
TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:27156604 original size:96 final size:96
Alignment explanation
Indices: 27156440--27156775 Score: 559
Period size: 96 Copynumber: 3.5 Consensus size: 96
27156430 CCCTTCGGGA
* * * * * * *
27156440 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
*
27156505 ACTTCCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
27156536 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
27156601 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
27156632 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CCTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
27156696 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
27156727 CTTATCACATATATATACAC-TTCACATTCATCACATCGGCCATTAGGCC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
27156776 TTACTATCAT
Statistics
Matches: 227, Mismatches: 10, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
95 56 0.25
96 160 0.70
97 11 0.05
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:27160636 original size:6 final size:6
Alignment explanation
Indices: 27160614--27160647 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
27160604 TAATGGTAGT
* *
27160614 AGTAAC GGTAGC AGTAAC AGTAAC AGTAAC AGTA
1 AGTAAC AGTAAC AGTAAC AGTAAC AGTAAC AGTA
27160648 TTCAACACAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.44, C:0.15, G:0.24, T:0.18
Consensus pattern (6 bp):
AGTAAC
Found at i:27160679 original size:45 final size:45
Alignment explanation
Indices: 27160627--27160731 Score: 147
Period size: 45 Copynumber: 2.3 Consensus size: 45
27160617 AACGGTAGCA
* *
27160627 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCT
1 GTAACAGTAACAGTAACAGTATTCAACACAAAAAGTGCTGAATCG
* * * *
27160672 GTAACAGTAACGGTAACAGTATTCAGCACAAAAAGTGTTGAGTCG
1 GTAACAGTAACAGTAACAGTATTCAACACAAAAAGTGCTGAATCG
*
27160717 GTAATAGTAACAGTA
1 GTAACAGTAACAGTA
27160732 GTCGGCATAT
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 52 1.00
ACGTcount: A:0.41, C:0.16, G:0.20, T:0.23
Consensus pattern (45 bp):
GTAACAGTAACAGTAACAGTATTCAACACAAAAAGTGCTGAATCG
Found at i:27161771 original size:17 final size:17
Alignment explanation
Indices: 27161749--27161783 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
27161739 GAATGGTCTC
*
27161749 TGTTTCTTTTCTTCTTT
1 TGTTTCTTTTATTCTTT
27161766 TGTTTCTTTTATTCTTT
1 TGTTTCTTTTATTCTTT
27161783 T
1 T
27161784 ATTTTATTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.03, C:0.14, G:0.06, T:0.77
Consensus pattern (17 bp):
TGTTTCTTTTATTCTTT
Found at i:27161849 original size:22 final size:21
Alignment explanation
Indices: 27161806--27161853 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 21
27161796 TATGTATTAG
27161806 TTAATAATAATAAAAATATAT
1 TTAATAATAATAAAAATATAT
*
27161827 TATAATAATAAT-ATAATATTAT
1 T-TAATAATAATAAAAATA-TAT
27161849 TTAAT
1 TTAAT
27161854 TCATAAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 10 0.42
22 14 0.58
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
TTAATAATAATAAAAATATAT
Found at i:27168118 original size:46 final size:46
Alignment explanation
Indices: 27168062--27168155 Score: 143
Period size: 46 Copynumber: 2.0 Consensus size: 46
27168052 CAAAGAAAAG
* * *
27168062 ACCTCAACCCACTATCAAGAATGATAGGAACCTTGGTATATGATGA
1 ACCTCAACCCACTATCAAGAATGATAAGAACCTTGGAATATAATGA
* *
27168108 ACCTCGACCCACTATCAAGGATGATAAGAACCTTGGAATATAATGA
1 ACCTCAACCCACTATCAAGAATGATAAGAACCTTGGAATATAATGA
27168154 AC
1 AC
27168156 GCCACACAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.22
Consensus pattern (46 bp):
ACCTCAACCCACTATCAAGAATGATAAGAACCTTGGAATATAATGA
Found at i:27168822 original size:21 final size:23
Alignment explanation
Indices: 27168775--27168824 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
27168765 TCACTTGCAA
* *
27168775 TAAACACATTAAAATGAGTTAAT
1 TAAACACATTAAAATCACTTAAT
27168798 TAAACACATTAAAA-CACTT-AT
1 TAAACACATTAAAATCACTTAAT
27168819 TAAACA
1 TAAACA
27168825 GAACACACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 8 0.32
22 3 0.12
23 14 0.56
ACGTcount: A:0.54, C:0.14, G:0.04, T:0.28
Consensus pattern (23 bp):
TAAACACATTAAAATCACTTAAT
Found at i:27180406 original size:40 final size:39
Alignment explanation
Indices: 27180362--27180497 Score: 123
Period size: 40 Copynumber: 3.4 Consensus size: 39
27180352 GCTTATCCTT
* * * * *
27180362 AGCTCATAGAGGAGCTTTACTAATACACAGTTGATCTATA
1 AGCTCACAGAGGAGCTTCATTAATACACACTTG-TCCATA
* *
27180402 AGCTCACAGGGGAGCTTCATTGATACACAACTTGTCCATA
1 AGCTCACAGAGGAGCTTCATTAATACAC-ACTTGTCCATA
* *
27180442 AGCTCACA-AGGGAGCTTCATTAATACACAACTTATCCTTA
1 AGCTCACAGA-GGAGCTTCATTAATACAC-ACTTGTCCATA
**
27180482 A-CTCATGGAGGAGCTT
1 AGCTCACAGAGGAGCTT
27180498 TGTCGATACA
Statistics
Matches: 80, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
39 11 0.14
40 65 0.81
41 4 0.05
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.27
Consensus pattern (39 bp):
AGCTCACAGAGGAGCTTCATTAATACACACTTGTCCATA
Found at i:27180418 original size:79 final size:81
Alignment explanation
Indices: 27180320--27180470 Score: 191
Period size: 80 Copynumber: 1.9 Consensus size: 81
27180310 CTTCATCACT
* * * * * *
27180320 TAAGCTCACGTGGGGAGCTTCACTGATCCACAGCTTATCC-TTAGCTCA-TAGAGGAGCTTTACT
1 TAAGCTCACGAGGGGAGCTTCACTGATACACAACTTATCCATAAGCTCACAAG-GGAGCTTCACT
27180383 AATACACAGTTGATCTA
65 AATACACAGTTGATCTA
* * *
27180400 TAAGCTCAC-AGGGGAGCTTCATTGATACACAACTTGTCCATAAGCTCACAAGGGAGCTTCATTA
1 TAAGCTCACGAGGGGAGCTTCACTGATACACAACTTATCCATAAGCTCACAAGGGAGCTTCACTA
27180464 ATACACA
66 ATACACA
27180471 ACTTATCCTT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
79 25 0.42
80 33 0.55
81 2 0.03
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.26
Consensus pattern (81 bp):
TAAGCTCACGAGGGGAGCTTCACTGATACACAACTTATCCATAAGCTCACAAGGGAGCTTCACTA
ATACACAGTTGATCTA
Found at i:27180805 original size:52 final size:52
Alignment explanation
Indices: 27180743--27180902 Score: 194
Period size: 52 Copynumber: 3.1 Consensus size: 52
27180733 AATTCCAAAC
*
27180743 CACTCACACTTTTAAAAACTTAGTAAAAAACATACTCATAACGAAGCCCAAT
1 CACTCACACTTTTAAAAACTTAGTAAAAAACATACTCATAACGGAGCCCAAT
* * * * * *
27180795 CACTCCCACTTTTAAAAGCTTAGTAAAGAACATAATCATAATGGAGCCTAAT
1 CACTCACACTTTTAAAAACTTAGTAAAAAACATACTCATAACGGAGCCCAAT
* * * * * * *
27180847 CACTCATACTTTTATAACCTTAGTAAATAACATACTTATAGCGGAGCCCGAT
1 CACTCACACTTTTAAAAACTTAGTAAAAAACATACTCATAACGGAGCCCAAT
27180899 CACT
1 CACT
27180903 TATCAAAAAA
Statistics
Matches: 90, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
52 90 1.00
ACGTcount: A:0.40, C:0.24, G:0.09, T:0.27
Consensus pattern (52 bp):
CACTCACACTTTTAAAAACTTAGTAAAAAACATACTCATAACGGAGCCCAAT
Found at i:27182619 original size:39 final size:40
Alignment explanation
Indices: 27182574--27182797 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
27182564 GCTCCTCGTT
* * * *
27182574 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
27182614 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
27182653 CGAATGCCTTCGGGACTTAACCCGGATTTAGT-ACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
27182692 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
27182732 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
27182773 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
27182798 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 20, Indels: 14
0.82 0.10 0.07
Matches are distributed among these distances:
39 70 0.45
40 76 0.48
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:27182677 original size:79 final size:77
Alignment explanation
Indices: 27182574--27182797 Score: 252
Period size: 79 Copynumber: 2.8 Consensus size: 77
27182564 GCTCCTCGTT
* * *
27182574 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCACACAAAGCCTTCGGGACTTAACCCGGA
27182639 TTTAATAACTCGCA
65 TTT-ATAACTCGCA
* * * *
27182653 CGAATGCCTTCGGGACTTAACCCGGATTTAGTACTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCACACAAA-GCCTTCGGGACTTAACCCGG-
* *
27182718 ATTTGTATCTCGCA
64 ATTTATAACTCGCA
* * * * *
27182732 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-ACTCA-CACAAAGCCTTCGGGACTTAACCCG
27182796 GA
63 GA
27182798 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
78 12 0.10
79 79 0.65
80 25 0.20
81 6 0.05
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (77 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCACACAAAGCCTTCGGGACTTAACCCGGAT
TTATAACTCGCA
Found at i:27182806 original size:41 final size:41
Alignment explanation
Indices: 27182729--27182806 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
27182719 TTTGTATCTC
* * *
27182729 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
27182770 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
27182807 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:27190151 original size:39 final size:40
Alignment explanation
Indices: 27190106--27190328 Score: 249
Period size: 39 Copynumber: 5.7 Consensus size: 40
27190096 GCTCCTCGTT
* * * *
27190106 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
27190146 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
27190185 CGAATGCCTTCGGGACTTAACCCGGATTTAGT-ACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
27190224 CAAAGGCCTTCGGGGCTTAACCCGGATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
27190263 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
27190304 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
27190329 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 20, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
38 4 0.03
39 94 0.60
40 48 0.31
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:27190209 original size:79 final size:77
Alignment explanation
Indices: 27190106--27190328 Score: 259
Period size: 79 Copynumber: 2.8 Consensus size: 77
27190096 GCTCCTCGTT
* * *
27190106 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCACACAAAGCCTTCGGGACTTAACCCGGA
27190171 TTTAATAACTCGCA
65 TTT-ATAACTCGCA
* * * *
27190185 CGAATGCCTTCGGGACTTAACCCGGATTTAGTACTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCACACAAA-GCCTTCGGGACTTAACCCGGA
* *
27190250 TTTGTATCTCGCA
65 TTTATAACTCGCA
* * * * *
27190263 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-ACTCA-CACAAAGCCTTCGGGACTTAACCCG
27190327 GA
63 GA
27190329 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
77 3 0.02
78 40 0.33
79 73 0.60
80 6 0.05
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (77 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCACACAAAGCCTTCGGGACTTAACCCGGAT
TTATAACTCGCA
Found at i:27190288 original size:118 final size:119
Alignment explanation
Indices: 27190073--27190328 Score: 270
Period size: 118 Copynumber: 2.2 Consensus size: 119
27190063 AAATCACGTA
* * ** * * *
27190073 CCTTCGGGATTTAA-CCGGATATAGCTCCTCGTTCAAATGCCTTCGGGACATAGCCCGGTTTTAG
1 CCTTCGGGACTTAACCCGGATATAGCTACTCGCACAAAGGCCTTCGGGACATAACCCGGATTTAG
* * *
27190137 TAACTCACACAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCACGAATG
66 TAACTCACACAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC-AAAG
* * *
27190191 CCTTCGGGACTTAACCCGGATTTAG-TACTCGCACAAAGGCCTTCGGGGCTTAACCCGGATTT-G
1 CCTTCGGGACTTAACCCGGATATAGCTACTCGCACAAAGGCCTTCGGGACATAACCCGGATTTAG
* * ** * *
27190254 TATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAG
66 TAACTCACAC-AATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCACAAAG
*
27190309 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
27190329 CAGCATTCAA
Statistics
Matches: 114, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
117 12 0.11
118 88 0.77
119 14 0.12
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (119 bp):
CCTTCGGGACTTAACCCGGATATAGCTACTCGCACAAAGGCCTTCGGGACATAACCCGGATTTAG
TAACTCACACAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCACAAAG
Found at i:27190337 original size:41 final size:41
Alignment explanation
Indices: 27190260--27190337 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
27190250 TTTGTATCTC
* * *
27190260 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
27190301 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
27190338 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:27201078 original size:324 final size:323
Alignment explanation
Indices: 27200421--27201387 Score: 1663
Period size: 324 Copynumber: 3.0 Consensus size: 323
27200411 GTTGATGAAG
*
27200421 ACCCTGGCATGTTTTTGACTCTCTCTCTTCATCTTGGAAACAATCATTGTATCAAGACAATAATT
1 ACCCTGGCATGTTTTTGACTCTGTCTCTTCATCTTGGAAACAATCATTGTATCAAGACAATAATT
*
27200486 TCTATCAATTAGGAAACCTTGAAAGTTGTTTCTTTAATTATTATAAAAAATTTCAACATTTTAGA
66 TCTGTCAATTAGGAAACCTTGAAAGTTGTTTCTTTAATTATTATAAAAAATTTCAACATTTTAGA
* *
27200551 GGGATAATAATGTAGAGAAGGGAAATCATAGTGTTTTTTTATTTTATTTCAAGCAAGCAACAGAG
131 GGGATAATAACGTAGAGAAGGGAAATCATAGTG-TTTTTTATTTTATTTCAAGCAAGCAACAGAA
* *
27200616 GAGGTTGAGACACTTATTATTGTATGGGGTAATTTATACATATAGGAACTGGTCGAGTAAATGCC
195 GAGGTTGAGACACTTATTGTTGTATGGGGTAATTTATCCATATAGGAACTGGTCGAGTAAATGCC
*
27200681 TTTATGATCAGTTTAATCATAAATAACCTTGGGGCTTTCCCCATAAGTGGTTACCTTTTTATTTT
260 TTTATGATCAGTTTAATCATAAATAACCTTGGGGCTTT-CCCATACGTGGTTACCTTTTTATTTT
*
27200746 ACCCTGGCATGTTTTTGACTGTGTCTCTTCATCTTGGAAACAATCATTGTATCAAGACAATAATT
1 ACCCTGGCATGTTTTTGACTCTGTCTCTTCATCTTGGAAACAATCATTGTATCAAGACAATAATT
*
27200811 TCTGTCTATTAGGAAACCTTGAAAGTTGTTTCTTTAATTATTATAAAAAATTTCAACATTTTAGA
66 TCTGTCAATTAGGAAACCTTGAAAGTTGTTTCTTTAATTATTATAAAAAATTTCAACATTTTAGA
*
27200876 GGGATAATAACGTAGAAAAGGGAAATCATAGTGTTTTTTATTTTATTTCAAGCAAGCAACAGAAG
131 GGGATAATAACGTAGAGAAGGGAAATCATAGTGTTTTTTATTTTATTTCAAGCAAGCAACAGAAG
*
27200941 AGGTTGAGACACTTATTGTTGTATGGGGTAATTTATCCATATAGGAACTGGTCGAGAAAATGCCT
196 AGGTTGAGACACTTATTGTTGTATGGGGTAATTTATCCATATAGGAACTGGTCGAGTAAATGCCT
* *
27201006 TTATGATCAGTTTAATCTTGAATAACCTTGGGGCTTTACCCATACGTGGTTACCTTTTTATTTT
261 TTATGATCAGTTTAATCATAAATAACCTTGGGGCTTT-CCCATACGTGGTTACCTTTTTATTTT
*
27201070 ACCCTGGCATGTTTTTGACTCTGTCTCTTCATCTTGGAAACAATCATTGTATCAACACAATAATT
1 ACCCTGGCATGTTTTTGACTCTGTCTCTTCATCTTGGAAACAATCATTGTATCAAGACAATAATT
27201135 TCTGTCAATTAGGAAACCTTGAAAGTTG-TTCTTTTAATTATTATAAAAAATTTCAACATTTTAG
66 TCTGTCAATTAGGAAACCTTGAAAGTTGTTTC-TTTAATTATTATAAAAAATTTCAACATTTTAG
*
27201199 AGGGATAATAACGTAGAGAAGGGAAATCACAGTGTTTTTTATTTTATTTCAAGCAAGCAAC---A
130 AGGGATAATAACGTAGAGAAGGGAAATCATAGTGTTTTTTATTTTATTTCAAGCAAGCAACAGAA
** * *
27201261 GAGGTTGAGACACTTACCGTTGTATGGGGTAATTTTAGCCATATAGCAACTGGTCTTGAGTAAAT
195 GAGGTTGAGACACTTATTGTTGTATGGGGTAA-TTTATCCATATAGGAACTGGTC--GAGTAAAT
*
27201326 GCCTTTCTGATCAGTTTAATCATAAATAACCTTGGGGCTTTCCCATACGTGGTTACCTTTTT
257 GCCTTTATGATCAGTTTAATCATAAATAACCTTGGGGCTTTCCCATACGTGGTTACCTTTTT
27201388 CTCCAAAGGA
Statistics
Matches: 611, Mismatches: 27, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
321 31 0.05
322 20 0.03
323 24 0.04
324 379 0.62
325 157 0.26
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (323 bp):
ACCCTGGCATGTTTTTGACTCTGTCTCTTCATCTTGGAAACAATCATTGTATCAAGACAATAATT
TCTGTCAATTAGGAAACCTTGAAAGTTGTTTCTTTAATTATTATAAAAAATTTCAACATTTTAGA
GGGATAATAACGTAGAGAAGGGAAATCATAGTGTTTTTTATTTTATTTCAAGCAAGCAACAGAAG
AGGTTGAGACACTTATTGTTGTATGGGGTAATTTATCCATATAGGAACTGGTCGAGTAAATGCCT
TTATGATCAGTTTAATCATAAATAACCTTGGGGCTTTCCCATACGTGGTTACCTTTTTATTTT
Found at i:27217137 original size:18 final size:19
Alignment explanation
Indices: 27217116--27217152 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
27217106 TTTTAAAAAA
27217116 TATAAAT-TTTGGAATTTT
1 TATAAATGTTTGGAATTTT
*
27217134 TATAAATGTTTTGAATTTT
1 TATAAATGTTTGGAATTTT
27217153 CAAAGTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (19 bp):
TATAAATGTTTGGAATTTT
Found at i:27217164 original size:19 final size:20
Alignment explanation
Indices: 27217142--27217189 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
27217132 TTTATAAATG
*
27217142 TTTTGAATTT-TCAAAGTTA
1 TTTTGAATTTATCAAAATTA
*
27217161 TTTTGAATTTATGAAAATTA
1 TTTTGAATTTATCAAAATTA
27217181 TTTTGAATT
1 TTTTGAATT
27217190 ATTTTGTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.54
Consensus pattern (20 bp):
TTTTGAATTTATCAAAATTA
Found at i:27222056 original size:13 final size:13
Alignment explanation
Indices: 27222038--27222062 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27222028 TATTTTAATA
27222038 TTATTTTGTGTGT
1 TTATTTTGTGTGT
27222051 TTATTTTGTGTG
1 TTATTTTGTGTG
27222063 CATTTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:27223691 original size:41 final size:41
Alignment explanation
Indices: 27223646--27223747 Score: 152
Period size: 41 Copynumber: 2.5 Consensus size: 41
27223636 GCTTAGCGCT
*
27223646 TAGCAGGCTTATTGCCGGTGAAACACTTCAGACTAAATGTC
1 TAGCAGGCTTAATGCCGGTGAAACACTTCAGACTAAATGTC
* * *
27223687 TAGCAGGCTTAATGCCGGTGAAATATTTCAGACTATATGTC
1 TAGCAGGCTTAATGCCGGTGAAACACTTCAGACTAAATGTC
27223728 TAGCAGGC-TAAGTGCCGGTG
1 TAGCAGGCTTAA-TGCCGGTG
27223748 TACTGAATCA
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
40 3 0.05
41 53 0.95
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (41 bp):
TAGCAGGCTTAATGCCGGTGAAACACTTCAGACTAAATGTC
Found at i:27227421 original size:4 final size:4
Alignment explanation
Indices: 27227414--27227439 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
27227404 ATATCTATGT
27227414 ATAC ATAC ATAC ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC AT
27227440 TTTGATAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.27
Consensus pattern (4 bp):
ATAC
Found at i:27233093 original size:50 final size:50
Alignment explanation
Indices: 27233039--27233591 Score: 390
Period size: 50 Copynumber: 11.2 Consensus size: 50
27233029 GCAATGGAAC
* * **
27233039 AGATTGAAGCTACGACAACGAATCTTGTTTCCCCGACATTGCAGTTAAAT
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAGTTAAAT
* * ** * ** *
27233089 AGATTAAAGCTACAACAGCGAATCTTACTTCCCTGACGGTGCAATGGAAC
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAGTTAAAT
* * ** *
27233139 AGATTGAAGCTACAACGGCGAATATTTTTTCCCCGACATTGCAATTAAAT
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAGTTAAAT
** **** *
27233189 AGATT---G--ACAACAGCGAATCTTACTTCCTTGGTGGTGCAG-TAGAAC
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAGTTA-AAT
* ** * *
27233234 AGATTGAAGCTACGAC-GACGAATCTTGTTTCCTCGACATTGCAATTAAAT
1 AGATTGAAGCTACAACAG-CGAATCTTACTTCCCCGACATTGCAGTTAAAT
* * ** * * ** *
27233284 AGATTGAAGCTACAACAACGAATCTTGCTTCCTTGGCAGTGCAGTCGAAC
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAGTTAAAT
* ** ** *
27233334 AGATTGAAGCTACGACAGTAAATCTTGTTTCCCCAACATTGCAGTTAAAT
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAGTTAAAT
* * * * * * * * *
27233384 AGATTGAAGCCACAACAGTGAATCTCACTACCCTGGCAGTGCA-ATAGAAC
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAGTTA-AAT
* * *
27233434 AGATTGAAGCTACGA-TGTCGAATC-TAGCTTCCCCGACATTGCAGTTAGAT
1 AGATTGAAGCTACAACAG-CGAATCTTA-CTTCCCCGACATTGCAGTTAAAT
** * ** * **
27233484 AGATTGAAGCTACAACAATGAATCTTACTT-CCCGGCGGTGTAGTGGAAT
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAGTTAAAT
* *
27233533 AGATTGAAGCTACGACAGCGAATCTTACTTCCCCGACATTACAGTTAAAT
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAGTTAAAT
27233583 AGATTGAAG
1 AGATTGAAG
27233592 ATGGTGAACC
Statistics
Matches: 373, Mismatches: 114, Indels: 32
0.72 0.22 0.06
Matches are distributed among these distances:
44 2 0.01
45 29 0.08
47 1 0.00
48 1 0.00
49 44 0.12
50 290 0.78
51 6 0.02
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (50 bp):
AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAGTTAAAT
Found at i:27233190 original size:100 final size:100
Alignment explanation
Indices: 27233017--27233591 Score: 689
Period size: 100 Copynumber: 5.8 Consensus size: 100
27233007 CAGATCCTAT
** *
27233017 TTCCCTGGCTTTGCAATGGAACAGATTGAAGCTACGACAACGAATCTTGTTTCCCCGACATTGCA
1 TTCCCTGGCGGTGCAATGGAACAGATTGAAGCTACGACAGCGAATCTTGTTTCCCCGACATTGCA
*
27233082 GTTAAATAGATTAAAGCTACAACAGCGAATCTTAC
66 GTTAAATAGATTGAAGCTACAACAGCGAATCTTAC
* * * * *
27233117 TTCCCTGACGGTGCAATGGAACAGATTGAAGCTACAACGGCGAATATTTTTTCCCCGACATTGCA
1 TTCCCTGGCGGTGCAATGGAACAGATTGAAGCTACGACAGCGAATCTTGTTTCCCCGACATTGCA
*
27233182 ATTAAATAGATT---G--ACAACAGCGAATCTTAC
66 GTTAAATAGATTGAAGCTACAACAGCGAATCTTAC
* * * * *
27233212 TTCCTTGGTGGTGCAGTAGAACAGATTGAAGCTACGAC-GACGAATCTTGTTTCCTCGACATTGC
1 TTCCCTGGCGGTGCAATGGAACAGATTGAAGCTACGACAG-CGAATCTTGTTTCCCCGACATTGC
* * *
27233276 AATTAAATAGATTGAAGCTACAACAACGAATCTTGC
65 AGTTAAATAGATTGAAGCTACAACAGCGAATCTTAC
* * * * ** *
27233312 TTCCTTGGCAGTGCAGTCGAACAGATTGAAGCTACGACAGTAAATCTTGTTTCCCCAACATTGCA
1 TTCCCTGGCGGTGCAATGGAACAGATTGAAGCTACGACAGCGAATCTTGTTTCCCCGACATTGCA
* * *
27233377 GTTAAATAGATTGAAGCCACAACAGTGAATCTCAC
66 GTTAAATAGATTGAAGCTACAACAGCGAATCTTAC
* * * * * *
27233412 TACCCTGGCAGTGCAATAGAACAGATTGAAGCTACGA-TGTCGAATCTAGCTTCCCCGACATTGC
1 TTCCCTGGCGGTGCAATGGAACAGATTGAAGCTACGACAG-CGAATCTTGTTTCCCCGACATTGC
* **
27233476 AGTTAGATAGATTGAAGCTACAACAATGAATCTTAC
65 AGTTAAATAGATTGAAGCTACAACAGCGAATCTTAC
* * * ** *
27233512 TTCCC-GGCGGTGTAGTGGAATAGATTGAAGCTACGACAGCGAATCTTACTTCCCCGACATTACA
1 TTCCCTGGCGGTGCAATGGAACAGATTGAAGCTACGACAGCGAATCTTGTTTCCCCGACATTGCA
27233576 GTTAAATAGATTGAAG
66 GTTAAATAGATTGAAG
27233592 ATGGTGAACC
Statistics
Matches: 408, Mismatches: 58, Indels: 19
0.84 0.12 0.04
Matches are distributed among these distances:
94 1 0.00
95 83 0.20
97 1 0.00
98 1 0.00
99 64 0.16
100 257 0.63
101 1 0.00
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (100 bp):
TTCCCTGGCGGTGCAATGGAACAGATTGAAGCTACGACAGCGAATCTTGTTTCCCCGACATTGCA
GTTAAATAGATTGAAGCTACAACAGCGAATCTTAC
Found at i:27233367 original size:195 final size:194
Alignment explanation
Indices: 27233019--27233589 Score: 719
Period size: 195 Copynumber: 2.9 Consensus size: 194
27233009 GATCCTATTT
** * *
27233019 CCCTGGCTTTGCAATGGAACAGATTGAAGCTACGACAACGAATCTTGTTTCCCCGACATTGCAGT
1 CCCTGGCAGTGCAATAGAACAGATTGAAGCTACGACGACGAATCTTGTTTCCCCGACATTGCAGT
* * * *
27233084 TAAATAGATTAAAGCTACAACAGCGAATCTTACTTCCCTGACGGTGCAATGGAACAGATTGAAGC
66 TAAATAGATTGAAGCTACAACAACGAATCTTACTT-CCTGGCGGTGCAGTGGAACAGATTGAAGC
* * * * * * *
27233149 TACAACGGCGAATATTTTTTCCCCGACATTGCAATTAAATAGATTGACAACAGCGAATCTTACTT
130 TACGACAGCGAATCTTATTTCCCCGACATTGCAGTTAAATAGATTGACAACAGCGAATCTCACTA
* ** * * *
27233214 CCTTGGTGGTGCAGTAGAACAGATTGAAGCTACGACGACGAATCTTGTTTCCTCGACATTGCAAT
1 CCCTGGCAGTGCAATAGAACAGATTGAAGCTACGACGACGAATCTTGTTTCCCCGACATTGCAGT
* * *
27233279 TAAATAGATTGAAGCTACAACAACGAATCTTGCTTCCTTGGCAGTGCAGTCGAACAGATTGAAGC
66 TAAATAGATTGAAGCTACAACAACGAATCTTACTTCC-TGGCGGTGCAGTGGAACAGATTGAAGC
** * * *
27233344 TACGACAGTAAATCTTGTTTCCCCAACATTGCAGTTAAATAGATTGAAGCCACAACAGTGAATCT
130 TACGACAGCGAATCTTATTTCCCCGACATTGCAGTTAAATAGATT---G--ACAACAGCGAATCT
27233409 CACTA
190 CACTA
* * * *
27233414 CCCTGGCAGTGCAATAGAACAGATTGAAGCTACGATGTCGAATCTAGCTTCCCCGACATTGCAGT
1 CCCTGGCAGTGCAATAGAACAGATTGAAGCTACGACGACGAATCTTGTTTCCCCGACATTGCAGT
* * * * *
27233479 TAGATAGATTGAAGCTACAACAATGAATCTTACTTCCCGGCGGTGTAGTGGAATAGATTGAAGCT
66 TAAATAGATTGAAGCTACAACAACGAATCTTACTTCCTGGCGGTGCAGTGGAACAGATTGAAGCT
* *
27233544 ACGACAGCGAATCTTACTTCCCCGACATTACAGTTAAATAGATTGA
131 ACGACAGCGAATCTTATTTCCCCGACATTGCAGTTAAATAGATTGA
27233590 AGATGGTGAA
Statistics
Matches: 319, Mismatches: 51, Indels: 13
0.83 0.13 0.03
Matches are distributed among these distances:
194 3 0.01
195 148 0.46
196 1 0.00
198 1 0.00
199 61 0.19
200 105 0.33
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (194 bp):
CCCTGGCAGTGCAATAGAACAGATTGAAGCTACGACGACGAATCTTGTTTCCCCGACATTGCAGT
TAAATAGATTGAAGCTACAACAACGAATCTTACTTCCTGGCGGTGCAGTGGAACAGATTGAAGCT
ACGACAGCGAATCTTATTTCCCCGACATTGCAGTTAAATAGATTGACAACAGCGAATCTCACTA
Found at i:27233679 original size:44 final size:44
Alignment explanation
Indices: 27233601--27233738 Score: 141
Period size: 44 Copynumber: 3.1 Consensus size: 44
27233591 GATGGTGAAC
* ** * * *
27233601 CTTATCTCCCTAAAGATGCAGCGGAGCAGATTGAAGCTAATAAT
1 CTTATCTCCCTAAAGTTATAGTGGAGCAGGTTGAAGCTAAGAAT
* ** * *
27233645 CTTATCTCCCTAAAGTTATAGTGGGGCAGGTTGAAATTACGAGT
1 CTTATCTCCCTAAAGTTATAGTGGAGCAGGTTGAAGCTAAGAAT
* * *
27233689 CTTATCTCCCTAAAGTTATAGTGGAGCAGGCTGAAGATAGCGAAT
1 CTTATCTCCCTAAAGTTATAGTGGAGCAGGTTGAAGCTA-AGAAT
27233734 CTTAT
1 CTTAT
27233739 TTCTCTGAAG
Statistics
Matches: 77, Mismatches: 16, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
44 68 0.88
45 9 0.12
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29
Consensus pattern (44 bp):
CTTATCTCCCTAAAGTTATAGTGGAGCAGGTTGAAGCTAAGAAT
Found at i:27233801 original size:96 final size:94
Alignment explanation
Indices: 27233678--27233987 Score: 247
Period size: 96 Copynumber: 3.4 Consensus size: 94
27233668 GGGCAGGTTG
*
27233678 AAATTACGAGTCTTATCTCCCTAAAGTTATAGTGGAGCAGGCTGAAGATAGCGAATCTTATTTCT
1 AAATTACGAGTCTTATCTCCCTGAAGTTATAGTGGAGCA-GCTGAAGATAGC-AATCTTATTTCT
*
27233743 CTGAAGTTGCACTGGAACAGATTGAAGCTAT
64 CTGAAGTTGCAGTGGAACAGATTGAAGCTAT
* * ** * * * * *
27233774 AAATTACCGA-TCTTATCTCTCTGAAGTTATAGTGGAGTA---GATCATATCAAACCTCATCTCC
1 AAATTA-CGAGTCTTATCTCCCTGAAGTTATAGTGGAGCAGCTGAAGATAGC-AATCTTATTTCT
*
27233835 CTGAAGTTGCAGTAGG-GC--A-T---G-T-T
64 CTGAAGTTGCAGT-GGAACAGATTGAAGCTAT
**
27233858 GAAATTACGAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAGTCTTATTT-
1 -AAATTACGAGTCTTATCTCCCTGAAGTTATAGTGGAGCAG-CTGAAGATAGCAA-TCTTATTTC
* * *
27233922 TCCTGACGTTGCAGT-GAGATAGATAGAAGCTAT
63 T-CTGAAGTTGCAGTGGA-ACAGATTGAAGCTAT
*
27233955 AAATTATCGA-TCTTATCTCTCTGAAGTTATAGT
1 AAATTA-CGAGTCTTATCTCCCTGAAGTTATAGT
27233988 AGAGTAGATC
Statistics
Matches: 162, Mismatches: 31, Indels: 42
0.69 0.13 0.18
Matches are distributed among these distances:
84 4 0.02
85 32 0.20
86 1 0.01
87 1 0.01
88 2 0.01
89 24 0.15
90 1 0.01
91 1 0.01
92 27 0.17
93 2 0.01
95 1 0.01
96 59 0.36
97 7 0.04
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (94 bp):
AAATTACGAGTCTTATCTCCCTGAAGTTATAGTGGAGCAGCTGAAGATAGCAATCTTATTTCTCT
GAAGTTGCAGTGGAACAGATTGAAGCTAT
Found at i:27233866 original size:181 final size:181
Alignment explanation
Indices: 27233648--27234043 Score: 582
Period size: 181 Copynumber: 2.2 Consensus size: 181
27233638 TAATAATCTT
* ** * *
27233648 ATCTCCCTAAAGTTATAGTGGGGCAGGTTGAAATTACGAGTCTTATCTCCCTAAAGTTATAGTGG
1 ATCTCCCTGAAGTTGCAGTAGGGCAGGTTGAAATTACGAGTCTTATCTCCCTAAAGTTACAGTGG
* *
27233713 AGCAGGCTGAAGATAGCGAA-TCTTA-TTTCTCTGAAGTTGCACTG-GAACAGATTGAAGCTATA
66 AGCAGACTGAAGATAGC-AAGTCTTATTTTC-CTGAAGTTGCACTGAG-ACAGATAGAAGCTATA
*
27233775 AATTACCGATCTTATCTCTCTGAAGTTATAGTGGAGTAGATCATATCAAACCTC
128 AATTACCGATCTTATCTCTCTGAAGTTATAGTAGAGTAGATCATATCAAACCTC
* * *
27233829 ATCTCCCTGAAGTTGCAGTAGGGCATGTTGAAATTACGAGTCTTATCTCCCTGAAGTTGCAGTGG
1 ATCTCCCTGAAGTTGCAGTAGGGCAGGTTGAAATTACGAGTCTTATCTCCCTAAAGTTACAGTGG
* * *
27233894 AGCAGACTGAAGATAGCAAGTCTTATTTTCCTGACGTTGCAGTGAGATAGATAGAAGCTATAAAT
66 AGCAGACTGAAGATAGCAAGTCTTATTTTCCTGAAGTTGCACTGAGACAGATAGAAGCTATAAAT
* *
27233959 TATCGATCTTATCTCTCTGAAGTTATAGTAGAGTAGATCATATCAAACCTT
131 TACCGATCTTATCTCTCTGAAGTTATAGTAGAGTAGATCATATCAAACCTC
* *
27234010 ATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAAT
1 ATCTCCCTGAAGTTGCAGTAGGGCAGGTTGAAAT
27234044 CACTAACCTT
Statistics
Matches: 193, Mismatches: 19, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
180 2 0.01
181 186 0.96
182 5 0.03
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (181 bp):
ATCTCCCTGAAGTTGCAGTAGGGCAGGTTGAAATTACGAGTCTTATCTCCCTAAAGTTACAGTGG
AGCAGACTGAAGATAGCAAGTCTTATTTTCCTGAAGTTGCACTGAGACAGATAGAAGCTATAAAT
TACCGATCTTATCTCTCTGAAGTTATAGTAGAGTAGATCATATCAAACCTC
Done.