Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold917
Parameters: 2 7 7 80 10 50 1000
Length:  69130

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4777--4834
30
1.9
30
89
0
89
41
3
24
31
1.71
5046--5077
13
2.5
13
94
0
55
31
0
12
56
1.37
5172--5413
50
4.7
50
86
4
297
26
24
29
19
1.99
5172--5421
100
2.4
103
88
6
364
26
24
29
20
1.99
8022--8060
18
2.3
16
82
8
51
46
0
5
48
1.24
8264--8296
17
1.9
17
93
0
57
75
0
24
0
0.80
8203--8299
13
7.1
13
69
10
59
68
3
24
4
1.22
9272--9373
51
1.9
52
84
9
136
16
18
23
41
1.90
9355--9387
6
5.5
6
96
0
57
18
21
12
48
1.80
9509--9572
18
3.6
18
80
0
74
40
12
15
31
1.85
27043--27077
17
2.0
18
88
5
54
17
45
25
11
1.81
29739--29807
32
2.2
31
87
7
95
28
4
20
46
1.70
29748--29853
32
3.3
34
79
14
109
29
3
18
48
1.66
30522--30602
41
2.0
41
97
0
153
35
23
17
23
1.95
37292--37322
15
2.1
15
100
0
62
19
6
6
67
1.35
37713--37751
18
2.2
18
85
0
51
30
12
17
38
1.88
37818--37863
16
2.9
16
90
0
74
30
6
19
43
1.76
38419--38472
17
3.2
17
84
5
74
29
5
20
44
1.74
43391--43418
5
5.6
5
100
0
56
17
0
21
60
1.36
43934--44017
19
4.5
19
67
11
57
59
1
3
35
1.22
44193--44237
21
2.1
21
84
8
56
26
8
4
60
1.46
44208--44293
28
3.0
28
83
8
93
30
4
1
63
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44224--44322
9
10.3
10
76
14
75
27
3
1
68
1.10
44214--44329
38
3.1
37
77
10
94
27
4
1
66
1.20
44223--44329
10
11.4
9
73
16
58
28
2
0
67
1.11
45738--45793
29
2.0
28
82
10
69
32
3
17
46
1.66
45791--45839
25
2.0
25
84
11
66
67
0
0
32
0.91
45787--45826
20
2.0
21
90
5
64
70
0
0
30
0.88
48241--48398
40
4.0
40
95
1
257
29
19
3
47
1.65
48243--48398
79
2.0
80
92
3
262
29
19
3
48
1.64
49001--49057
22
2.5
22
82
2
60
33
31
5
29
1.80
49012--49057
22
2.0
23
87
4
67
30
32
6
30
1.83
52039--52080
21
2.0
22
85
4
59
45
4
11
38
1.62
54115--54151
2
19.0
2
94
5
67
51
0
0
48
1.00
56980--57019
20
2.0
20
85
9
55
2
17
25
55
1.55
57841--58135
44
6.9
44
69
13
195
25
22
20
31
1.98
57758--58135
87
4.5
84
78
8
353
25
22
20
31
1.98
58314--58653
88
3.9
89
84
6
396
25
22
22
29
1.99
58467--58605
44
3.2
43
66
19
115
29
25
20
24
1.99
58480--58617
43
3.2
43
67
15
129
26
25
20
27
1.99
58511--58649
44
3.2
44
65
11
122
25
23
24
27
2.00
59915--59939
1
25.0
1
100
0
50
0
0
0
100
0.00

Tables:   1

The End!