Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold572
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53200
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.29
Found at i:1706 original size:564 final size:561
Alignment explanation
Indices: 16--4328 Score: 1831
Period size: 577 Copynumber: 7.3 Consensus size: 561
6 CATCTGATGA
*
16 CCTTACGAGCTCTAATAAGGTCATAGTTGTCATACTCGTT-TATTAGACTGAGTTGAGTGAGCGA
1 CCTTACGAGCTCT-ATAAGGTCAAAG-TGTCATACTC-TTATATTAGACTGAGTTG-GTGAGC-A
* *
80 -CGG-TTT-GCTCC-GGATTGGTTTCCGAGACTTGAAGATAATTGTTTAGACTAATTTGGATCGT
61 CCGGTTTTGGGTCCTGGGTT-GTTTCCGAGAC-TGAAGATAA----TTAGACT-ATTTGGATC-T
141 CCTGAA--CTCTTCTGGCTAGATAGAA-TCTTAT-TAAATTTGAAAATCAGAGATATCAATACCA
118 -CT-AATGCTCTTCT-G-TAGATAGAAGTCTTATGT-AATTTGAAAATCAGAGATATCAATA-CA
* * * *
202 CTAT-GGATCTTGAT-TTCTTAAGTAACTCCGTGGAAACAGTTCTACGGTTC-GTTGACAAGTCG
177 CTATGGGA-CTTTATATTCTTAAGTAACTCCGTGGAAAAAGTTCTACCGTTCGGTTGACAAGTCC
264 C-CTCATTTTATTTCTGTTCAGATGGACTAC-CTCTAACAAGAATTAGCT-AGCTC-ACATTTCT
241 CGCTCATTTTATTTCTGTTCAGATGGACTACTCTCTAACAA-AATTAG-TGAGCTCTACATTTCT
325 -AGATTGT-AGACTATATGGGGCTCCCAATTTCAATAATCTCTGA-AT-GATCCTCTC-CACTTC
304 GAGA-TGTAAGACTATATGGGGCT-CCAATTTCAATAATCTCTGATATGGATCCTCTCTCACTTC
*
385 ACGGTTGTAGACAGACAACTTC-CAATGCTCTGGTTCCGAGATTGAA-TTCA-AA--CTTCCATC
367 ACGGTTGTAGACAGAAAAC--CACAA-GCTCTGGTT-C-AGATTGAACTTCATAACTCTTCCATC
* *
445 CTCAGACCGATGGC-ATATTGAGACGGTGATTCATTATACTAGAGATCTGATTGGAGCTATTATT
427 CTCAGACCGATGGCAAT-TTGAGA--GTGATTCA-TATACTA-AGATATGATTGGAGC-AGTA-T
** * * *
509 CTATTCTGAGGTAGTTGGA-TTTTTTTCCCTA-TCAGGTTCGCCTACAATACCAGTTTGCCCAAT
485 -TA-TCTGAGGTAGTTGGAGGATTTTTCCTTAGTTAGGTTCGCCTACAATAACAGTTT--CCAAT
572 CTACATCTA-AT-CAC
546 CTACATCTAGATGCAC
* * *
586 CGTTACGAGCTCTAGTATGCTCAAAGTGTCATACTCCATTCATATTAGACTGAGTTGGGTGAGCA
1 CCTTACGAGCTCTA-TAAGGTCAAAGTGTCATACT-C-TT-ATATTAGACTGAGTT-GGTGAGCA
* * *
651 -CGGTTTT-GGTCCTGAG-TGTTTCCGAGACTGAAGATAATTAGACTATTTGGATCGCTGAAAGG
61 CCGGTTTTGGGTCCTGGGTTGTTTCCGAGACTGAAGATAATTAGACTATTTGGATCTCT--AATG
* * * * *
713 TTTCTTCTGGATGATAGATAAAGTCTTATGAAATCT-AAAATCAGAGATATCAAGTACTCTATGC
124 -CTCTTCTGTA-GATAG---AAGTCTTATGTAATTTGAAAATCAGAGATATCAA-TACACTATG-
* * ** *
777 GGACTTTGTATT-TCTATGTAACTCCGTGGAAAAATGTTCTA-CGTTCTCTT-ACCAAGTCCGGC
182 GGACTTTATATTCT-TAAGTAACTCCGTGGAAAAA-GTTCTACCGTTCGGTTGA-CAAGTCCCGC
* ** *
839 TCATTTCT-TTCCTGTTCAGAT-GACTTACTTCTCTGCCAAAA-T-GTGAGGCTCTATATTTCTG
244 TCATTT-TATTTCTGTTCAGATGGAC-TAC-TCTCTAACAAAATTAGTGA-GCTCTACATTTCTG
** * *
900 AGATTGTAAGACTGCAT-GGGTTCC-ATTTCAATTCATCTCTGATATGGATCCCTCTCTTCACTT
305 AGA-TGTAAGACTATATGGGGCTCCAATTTCAA-TAATCTCTGATATGGAT-CCTCTC-TCACTT
** * * * * * *
963 CAAAGTTCT--A-A-ATAACTACAAGCTCTGGGTC-GAGTTGAACTCCCAGT-ACTGCCTTCTAT
366 CACGGTTGTAGACAGAAAACCACAAGCTCTGGTTCAGA-TTGAACT-TCA-TAACT--CTTCCAT
* *
1022 -CTCAGACCGATGTCAA-TTGAAGGGTGCATTCATATACTAAGATATGA-TGGAGCATGTATTAT
426 CCTCAGACCGATGGCAATTTG-AGAGTG-ATTCATATACTAAGATATGATTGGAGCA-GTATTAT
* * * *
1084 CT-A-GT-GTGTAGAGGATTTTTTACCGTTAGTTGGGTTCGCCTTACAAGAACATTTTCCAATCT
488 CTGAGGTAGT-TGGAGGA-TTTTT-CC-TTAGTTAGGTTCGCC-TACAATAACAGTTTCCAATCT
1146 AGCATCATAGATGCAC
548 A-CATC-TAGATGCAC
1162 CCTTACGAGGCTCTATAAGGTCATAAGTG-CATATCTCTTATATTCAGACTGAGTTGGT-AGCAC
1 CCTTACGA-GCTCTATAAGGTCA-AAGTGTCATA-CTCTTATATT-AGACTGAGTTGGTGAGCAC
1225 CGGTTTTGGGTCCTGGGTTGTTTCCGA-ACTGAAGAT-ATGTAGACTATTT-GATCTCTAATGCT
62 CGGTTTTGGGTCCTGGGTTGTTTCCGAGACTGAAGATAAT-TAGACTATTTGGATCTCTAATGCT
1287 CTTC-GTAGATAGAAGTCTTATGTAATTTGAAAATCAGA-ATATCAACTACACT-TGGGACATTT
126 CTTCTGTAGATAGAAGTCTTATGTAATTTGAAAATCAGAGATATCAA-TACACTATGGGAC-TTT
1349 ATATTCTTAAGGTAACT-CGT-GAAAAAGTTC-ACCCGTTCGGTTGACAAGTCCCGCTCATTTTA
189 ATATTCTTAA-GTAACTCCGTGGAAAAAGTTCTA-CCGTTCGGTTGACAAGTCCCGCTCATTTTA
1411 TTTCTGTTCAGAT-GACTACTCTCT-ACAAAATTAG-GAGCTCATACATTTCTGA-ATGTCAAGA
252 TTTCTGTTCAGATGGACTACTCTCTAACAAAATTAGTGAGCTC-TACATTTCTGAGATGT-AAGA
1472 CTATAT-GGGCTCCAA-TTCAATAATCTCTGATATGGA-CCTCTCTCACTTC-CGGTTTGTAGAC
315 CTATATGGGGCTCCAATTTCAATAATCTCTGATATGGATCCTCTCTCACTTCACGG-TTGTAGAC
1533 AGAAAACCACAGAGGCTCTGGTTCAGACTTGAACTTCATAACTCGTTCCATCCTCAGACCGATGG
379 AGAAAACCACA-A-GCTCTGGTTCAGA-TTGAACTTCATAACTC-TTCCATCCTCAGACCGATGG
*
1598 CAATTTGAGAGTGATTCATATACTAAGATATTGATTCCTGAAGCAGTATTACTCTGAGGTAGTTG
440 CAATTTGAGAGTGATTCATATACTAAGATA-TGA-T--TGGAGCAGTATTA-TCTGAGGTAGTTG
1663 CGAGGATTTTTCCTTAGTTAGGTTC-CCT-CAATAACAGTTTCCAATCTACATCTAGATGCA-
500 -GAGGATTTTTCCTTAGTTAGGTTCGCCTACAATAACAGTTTCCAATCTACATCTAGATGCAC
* *
1723 CCTTACGAGC-CT-T-A-GTCAAA-TGTCGATACTTTTATATTAGACTGAATTGCGTGAAGCACG
1 CCTTACGAGCTCTATAAGGTCAAAGTGTC-ATACTCTTATATTAGACTGAGTTG-GTG-AGCAC-
** * * * * *
1783 CGGTCAGTGGGTCC-GAGCTGGTTTTCGAGACTG-ATATAATTTAGACTAATTTGGA-CGTCTGA
62 CGGT-TTTGGGTCCTG-GGTTGTTTCCGAGACTGAAGATAA-TTAGACT-ATTTGGATC-TCTAA
*
1845 TAGCGTTCTTCTGGTAG-TA-TAGTCTTATG-AATTTGAAATATCAGA-ATATCAATTACTACTT
122 T-GC--TCTTCT-GTAGATAGAAGTCTTATGTAATTTGAAA-ATCAGAGATATCAA-TAC-AC-T
* *
1906 ATGGGGACTTTGTAGTTTCTTAAGTAACTCCGCATGGAAAAAAGTTCTCACGGTTTACGGTTGAC
179 AT-GGGACTTTATA--TTCTTAAGTAACTCCG--TGG-AAAAAGTTCT-ACCG-TT-CGGTTGAC
* *
1971 AAAGT-CCGCTCATTTTATTTCTGTCCAGATGGACTACTCTCTACCAAAACTTAGTGTGAAGCTC
235 -AAGTCCCGCTCATTTTATTTCTGTTCAGATGGACTACTCTCTAACAAAA-TTA--GTG-AGCTC
*
2035 TACA-TTCTGAGATGGTAAGACTATATGGGGCGCCATATTTCAATAAATCTCTGATATGGATCCT
295 TACATTTCTGAGAT-GTAAGACTATATGGGGCTCCA-ATTTCAAT-AATCTCTGATATGGATCCT
*
2099 CATCTTCCACTTCAC-GTTGTATA-AG-AAACTC-C-AGC-CTGGGTTCCGATGATTGAACTCTC
357 C-TC-T-CACTTCACGGTTGTAGACAGAAAAC-CACAAGCTCT-GGTT-C-A-GATTGAACT-TC
** * *
2158 A-ATTTGCTTCCATCCTCCAGA-CGATGGTCAATTTGAGAGGCTGATTCCATATACT-AGAGATC
413 ATAACT-CTTCCATCCT-CAGACCGATGG-CAATTTGAGA-G-TGATT-CATATACTAAGATATG
* * * * * *
2220 ATTTGAGCTATCTTTATTTATTCTGAAGTAGTTGG-GAATTTTTTCCCGTAGTTCAGGTTCGCCG
472 ATTGGAGC-A---GTA-TTA-TCTGAGGTAGTTGGAGGA-TTTTT-CCTTAGTT-AGGTTCGCCT
2284 AC-ATAACAG-TTCCAATCTAGCATCTAGATTGCA-
528 ACAATAACAGTTTCCAATCTA-CATCTAGA-TGCAC
* * *
2317 CCTTACGAGCTCTAT-ATGCCAGTAAGTGTCATACTCTGT-TA-TAGACTTG-GTT-G-GAGGA-
1 CCTTACGAGCTCTATAAGGTCA--AAGTGTCATACTCT-TATATTAGAC-TGAGTTGGTGAGCAC
* *
2375 CGACG-TTT-GGTCCTGAGTTGGTTT-CGAGACTGAA-ATAATGTTAGACTAATTTGGATTGTCT
62 CG--GTTTTGGGTCCTGGGTT-GTTTCCGAGACTGAAGATAA--TTAGACT-ATTTGGA-TCTCT
* * * * **
2436 GAA-GGTCTTCTGATAGATAGATAAAGTCTTAT-AAATCTAAAAATCAGATCTATCAAGTTATCT
120 -AATGCTCTTCTG-TAGATAG---AAGTCTTATGTAATTTGAAAATCAGAGATATCAA--TA-C-
* * * *
2499 ACT-GGGGACTTTGTTATTTCTTGACGTTAACTCCGTGGAAAAATGTTCTCACAG-TC---TGAC
176 ACTATGGGACTTT-ATA-TTCTT-AAG-TAACTCCGTGGAAAAA-GTTCT-ACCGTTCGGTTGA-
* ** *
2559 CAA-T-CCGCTCATTTTATTCGCT-TTCAGATGGAAC-ACTCTCTGGCAAAAGTTATCTGAGCTC
234 CAAGTCCCGCTCATTTTATT-TCTGTTCAGATGG-ACTACTCTCTAACAAAA-TTA-GTGAGCTC
*** * *
2620 TAC-TTTCTGA-ATGTAAGACTGCCT-GGGTTCGCAATTTCAATAATCTAT-ATATGGATCCTCT
295 TACATTTCTGAGATGTAAGACTATATGGGGCTC-CAATTTCAATAATCTCTGATATGGATCCTCT
* * ** * *
2681 CTTCACTTTA-GATTCCAGA-AG--AACTGACAAGCTCTGGGTCGAGATTGAACTTCAGT-ACTG
359 C-TCACTTCACGGTTGTAGACAGAAAAC-CACAAGCTCTGGTTC-AGATTGAACTTCA-TAACT-
* * *
2741 CTTTCCATCCTTGAGACCGATGTCAATTTAGAGGGTGA-TCATTATACTAAGGATATTGATTTGG
419 C-TTCCATCC-TCAGACCGATGGCAATTT-GAGAGTGATTCA-TATACTAA-GATA-TGA-TTGG
* * * *
2805 -GTA-TGATTTGATTCT-AAGTAATTGGGAGGATTTTTACCGCTCTAG-T-GATTCGCTCTACAA
477 AGCAGT-A-TT-A-TCTGAGGTAGTT-GGAGGATTTTT--C-CT-TAGTTAGGTTCGC-CTACAA
2865 TTAACA-TCTACACTCCTCATATCCTCATACGCATCTTAACGACTGCA-
532 -TAACAGT-T----T-C-CA-A---TC-TA--CATC-T-A-GA-TGCAC
* *
2912 CCTTAC-A-CTCTATAA-GTC-AAGT-CCACT-CTGTTATATTAGACTGAG-TGGTGTA-CGA-C
1 CCTTACGAGCTCTATAAGGTCAAAGTGTCA-TACTCTTATATTAGACTGAGTTGGTG-AGC-ACC
* * *
2968 GCGTTTGATCGGTCGCCACTGACAGTTGAGCTTCACTCACTCCCGAGACTGACAATATGAAGTT-
63 G-GTTT--T-GG--GTC-CTG--GGTT--G--T---T---T-CCGAGACTG--AAGAT-AA-TTA
* * * *
3032 GATCTAATTTGGTATCTCTGAAGGCGTTTCTCTCGTGTATCATAG-A-TC-AATGTAAATTGATA
104 GA-CT-ATTTGG-ATCTCT-AATGC---TCT-TC-TGTA-GATAGAAGTCTTATGTAATTTGA-A
* *
3094 TAATCAGAGATATCAATACACTTATGAGCGACTTTGA-CTTCTTCTAAGTCATATAGACCTCGTG
158 -AATCAGAGATATCAATACAC-TATG-G-GACTTT-ATATTC-T-TAAG-----TA-A-CTC-CG
*
3158 TGGCGAAAAAAGTTCTAACGTTTCGGTTGACAAAAGT-CCGCTCATCTTATCCACCATTATCT-T
208 T-G-G-AAAAAGTTCTACCG-TTCGGTTGAC--AAGTCCCGCTCAT-TT-T-----ATT-TCTGT
*
3221 CGTCAGATGGACTACTCTCT-ACAAAAGTAGTGAAGCCTTCCTACATTTCCTGAGATTGCTAAGA
259 --TCAGATGGACTACTCTCTAACAAAATTAGTG-AG-C-T-CTACATTT-CTGAGA-TG-TAAGA
*
3285 CTATATGGGGCTCCAAATTTCAATAATCTCTTG-TAT-GATCCTCTCTTCACCTCACGGTTGTAG
315 CTATATGGGGCTCC-AATTTCAATAATCTC-TGATATGGATCCTCTC-TCACTTCACGGTTGTAG
* *** *
3348 A-ATAACTTCACTAGGCTCTGGTTC-GAATTGAACTTCA-ATACTGCGTTCCATCCTCATGACCG
377 ACAGAAAACCAC-AAGCTCTGGTTCAG-ATTGAACTTCATA-ACT-C-TTCCATCCTCA-GACCG
*
3410 ATGGCAA-TTGAGAGT-ATTCATATACTAGAGATATGATTTGAGCTATGTGATTTATTTCTGAGG
436 ATGGCAATTTGAGAGTGATTCATATACTA-AGATATGATTGGAGC-A-GT-A-TTA--TCTGAGG
* *
3473 TAGTTGGACGTTTTTTCCCGTTAGTTTA-GTTCGCCCCTACACATAACAGTTTCCAATCTAGCAT
494 TAGTTGGAGGATTTTT-CC-TTAG-TTAGGTTCG--CCTACA-ATAACAGTTTCCAATCTA-CAT
3537 CTAGATGGC-C
552 CTAGAT-GCAC
*
3547 ACCTTACGAGGCTC-ATAA--TCATACAGTTTCATACCTCTTATA--AGACTGAGTTGGGTGAGC
1 -CCTTACGA-GCTCTATAAGGTCA-A-AGTGTCATA-CTCTTATATTAGACTGAGTT-GGTGAGC
* * *
3607 AACGG-GTT-GGTCCTGAGTTGGTTTCCGAGACTGAAGATAATGTTAGACTAATTT-GATCTCTG
60 ACCGGTTTTGGGTCCTGGGTT-GTTTCCGAGACTGAAGATAA--TTAGACT-ATTTGGATCTCT-
*
3669 AA-GCTC-TCTGTA-ATAGAAGTCTTATGAAATTTGAAAATCAGA-ATATTCCAAGTTACCACTA
120 AATGCTCTTCTGTAGATAGAAGTCTTATGTAATTTGAAAATCAGAGATA-T-CAA--TA-CACTA
* *
3730 TGGGACTTTTTATTTCTTAAGGTAACTCCGCTCTTGGAAAAAGGTTTCTA-CGTATCGGTTGACC
180 TGGGACTTTATA-TTCTTAA-GTAACTCCG----TGGAAAAA-G-TTCTACCGT-TCGGTTGACA
*** * * *
3794 AGTTTAAGGTCTCATTTTATTCCTGTTCAGATGGACTACTCTCTGACAAAAGTTA-TGAACTCTA
236 AG--TCCCG-CTCATTTTATTTCTGTTCAGATGGACTACTCTCTAACAAAA-TTAGTGAGCTCTA
*
3858 CATTTTCTGA-ATTGTCAAGAGCT-TAATGGGGCTCCAATTTCAATTTAATCCTTTGAATATGGA
297 CA-TTTCTGAGA-TGT-AAGA-CTAT-ATGGGGCTCCAATTTCAA--TAAT-CTCTG-ATATGGA
3921 T-CTCTCTTCACTTCAC-GTAT-TA-A-AG-AAACTCACAAAGCTCTGGTTACAGATTGAACTTC
353 TCCTCTC-TCACTTCACGGT-TGTAGACAGAAAAC-CAC-AAGCTCTGGTT-CAGATTGAACTTC
* *
3980 AATTATCTGCGTTCCATCCTC--ACCGAATGGTCATTTTGAGAGGGGGTGAGGCTTCATATACTT
413 -A-TAACT-C-TTCCATCCTCAGACCG-ATGG-CAATTTGAGA----GTGA---TTCATATAC-T
*
4043 AGATGATATGTTTGTGA-CTAGTTAATTTAT-T-ATGGTAGGTTGAGAGGATTTTTCCAGTTAGT
464 A-A-GATATGATTG-GAGC-AG-T-A-TTATCTGA-GGTA-GTTG-GAGGATTTTTCC--TTAGT
*
4105 T-GAGTTCGCCTAC-ATAACAGTTTCC-A-CTAGCATCTAGCATG-GC
517 TAG-GTTCGCCTACAATAACAGTTTCCAATCTA-CATCTAG-ATGCAC
*
4148 CCTTACGAGGCCTCTAT-ATGTCATAAGTGTCAT-CTCTGT-TAATTA-ACTGAGTTGTTTGGTG
1 CCTTACGA-G-CTCTATAAGGTCA-AAGTGTCATACTCT-TAT-ATTAGACTGA---G-TTGGTG
* * * * *
4209 AGCGACGGGTTTAGTGTCCTGAGTTGGTTTCCTGAGACTGAAGATATGTTAGACTAATTTGGATC
57 AGC-ACCGGTTTTGGGTCCTGGGTT-GTTTCC-GAGACTGAAGATA-ATTAGACT-ATTTGGATC
* * * * *
4274 GTCTGAGGTTCTTCATGATAGATAGTAAAGTCTTATGAAACTTGAAAATC-GAGAT
117 -TCTAATGCTCTTC-TG-TAGATAG--AAGTCTTATGTAATTTGAAAATCAGAGAT
4329 TAGACTTCTC
Statistics
Matches: 2975, Mismatches: 276, Indels: 938
0.71 0.07 0.22
Matches are distributed among these distances:
554 12 0.00
555 14 0.00
556 8 0.00
557 16 0.01
558 12 0.00
559 22 0.01
560 32 0.01
561 51 0.02
562 59 0.02
563 54 0.02
564 88 0.03
565 56 0.02
566 58 0.02
567 42 0.01
568 14 0.00
569 59 0.02
570 77 0.03
571 58 0.02
572 65 0.02
573 72 0.02
574 78 0.03
575 90 0.03
576 80 0.03
577 94 0.03
578 63 0.02
579 46 0.02
580 21 0.01
581 6 0.00
582 19 0.01
583 28 0.01
584 19 0.01
585 22 0.01
586 17 0.01
587 80 0.03
588 40 0.01
589 22 0.01
590 47 0.02
591 63 0.02
592 55 0.02
593 51 0.02
594 78 0.03
595 69 0.02
596 38 0.01
597 48 0.02
598 43 0.01
599 22 0.01
600 20 0.01
601 23 0.01
602 23 0.01
603 28 0.01
604 18 0.01
605 29 0.01
606 29 0.01
607 25 0.01
608 53 0.02
609 32 0.01
610 25 0.01
611 17 0.01
612 16 0.01
613 7 0.00
614 10 0.00
615 27 0.01
616 42 0.01
617 15 0.01
618 24 0.01
619 17 0.01
620 6 0.00
621 17 0.01
622 2 0.00
623 3 0.00
624 2 0.00
625 4 0.00
626 6 0.00
627 7 0.00
628 1 0.00
629 1 0.00
630 4 0.00
631 6 0.00
632 9 0.00
633 5 0.00
634 4 0.00
635 4 0.00
636 8 0.00
637 4 0.00
638 12 0.00
639 16 0.01
640 23 0.01
641 22 0.01
642 18 0.01
643 4 0.00
644 6 0.00
645 5 0.00
646 7 0.00
647 26 0.01
648 48 0.02
649 40 0.01
650 54 0.02
651 13 0.00
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (561 bp):
CCTTACGAGCTCTATAAGGTCAAAGTGTCATACTCTTATATTAGACTGAGTTGGTGAGCACCGGT
TTTGGGTCCTGGGTTGTTTCCGAGACTGAAGATAATTAGACTATTTGGATCTCTAATGCTCTTCT
GTAGATAGAAGTCTTATGTAATTTGAAAATCAGAGATATCAATACACTATGGGACTTTATATTCT
TAAGTAACTCCGTGGAAAAAGTTCTACCGTTCGGTTGACAAGTCCCGCTCATTTTATTTCTGTTC
AGATGGACTACTCTCTAACAAAATTAGTGAGCTCTACATTTCTGAGATGTAAGACTATATGGGGC
TCCAATTTCAATAATCTCTGATATGGATCCTCTCTCACTTCACGGTTGTAGACAGAAAACCACAA
GCTCTGGTTCAGATTGAACTTCATAACTCTTCCATCCTCAGACCGATGGCAATTTGAGAGTGATT
CATATACTAAGATATGATTGGAGCAGTATTATCTGAGGTAGTTGGAGGATTTTTCCTTAGTTAGG
TTCGCCTACAATAACAGTTTCCAATCTACATCTAGATGCAC
Found at i:20440 original size:39 final size:38
Alignment explanation
Indices: 20396--20524 Score: 170
Period size: 39 Copynumber: 3.3 Consensus size: 38
20386 GTAACTCATT
*
20396 CAATGCCTTCGGGACTTAACCCGGATTTAAAACTCGCA
1 CAATGCCTTCGGGACTTAACCCGGAATTAAAACTCGCA
* *
20434 CGAATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCA
1 C-AATGCCTTCGGGACTTAACCCGGAATTA-AAACTCGCA
*
20474 CAAAGGCCTTC-GGACTTAACCCGGAATTAATAACTCGCA
1 C-AATGCCTTCGGGACTTAACCCGGAATTAA-AACTCGCA
*
20513 CAATACCTTCGG
1 CAATGCCTTCGG
20525 ATCTTAGTCC
Statistics
Matches: 78, Mismatches: 9, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
38 8 0.10
39 54 0.69
40 16 0.21
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (38 bp):
CAATGCCTTCGGGACTTAACCCGGAATTAAAACTCGCA
Found at i:20458 original size:78 final size:77
Alignment explanation
Indices: 20360--20577 Score: 226
Period size: 78 Copynumber: 2.8 Consensus size: 77
20350 CTCGTTCAAG
* ** * *
20360 TGCCTTCGGGACATAGCCCGGTTATAGTAACTCATTCAATGCCTTCGGGACTTAACCCGGATTTA
1 TGCCTTCGGGACTTAGCCCGG-TATAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGAATTA
20425 A-AACTCGCACGAA
65 ATAACTCGCAC-AA
* * * *
20438 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTC-GGACTTAACCCGGAATT
1 TGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCACACAAA-GCCTTCGGGACTTAACCCGGAATT
20502 AATAACTCGCACAA
64 AATAACTCGCACAA
* * * * *
20516 TACCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CTTAGCCCGG-TATAGTAACTCA-CACAAAGCCTTCGGGACTTAACCCGGA
20578 CAGCATTCAA
Statistics
Matches: 115, Mismatches: 18, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
77 4 0.03
78 76 0.66
79 35 0.30
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (77 bp):
TGCCTTCGGGACTTAGCCCGGTATAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGAATTAA
TAACTCGCACAA
Found at i:28257 original size:39 final size:40
Alignment explanation
Indices: 28180--28326 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
28170 TAGCTCCTCG
* * *
28180 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
28220 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
28259 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
28299 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
28327 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:28337 original size:80 final size:80
Alignment explanation
Indices: 28226--28406 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
28216 CTCATTCAAT
* * *
28226 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
28289 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
28305 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
28369 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
28386 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
28407 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:28366 original size:40 final size:40
Alignment explanation
Indices: 28223--28406 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
28213 TAACTCATTC
* *
28223 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
28263 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
28303 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
28343 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
28384 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
28407 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:42383 original size:607 final size:608
Alignment explanation
Indices: 29883--42965 Score: 25985
Period size: 608 Copynumber: 21.6 Consensus size: 608
29873 TTTGGGCTGT
29883 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
1 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
29948 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
66 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
*
30013 AAATTGACCATCGGTCTGAGGATGGAACGCAGTATTGAAGTTCAATCTCGAACCCAGAGCCTTGT
131 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
30078 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
196 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
30143 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
261 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
30208 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
326 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
30273 AAGAAATACAAAGT-CCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
391 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
30337 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
456 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
30402 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
521 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
30467 ACCATATAGAGCCTCGTAAGGTG
586 ACCATATAGAGCCTCGTAAGGTG
30490 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
1 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
30555 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
66 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
30620 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
131 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
30685 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
196 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
30750 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
261 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
30815 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
326 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
30880 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
391 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
30945 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
456 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
31010 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
521 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
31075 ACCATATAGAGCCTCGTAAGGTG
586 ACCATATAGAGCCTCGTAAGGTG
31098 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
1 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
31163 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
66 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
31228 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
131 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
31293 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
196 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
31358 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
261 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
31423 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
326 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
31488 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
391 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
31553 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
456 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
31618 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
521 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
31683 ACCATATAGAGCCTCGTAAGGTG
586 ACCATATAGAGCCTCGTAAGGTG
31706 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
1 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
31771 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
66 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
31836 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
131 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
31901 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
196 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
31966 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
261 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
32031 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
326 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
32096 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
391 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
32161 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
456 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
32226 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
521 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
32291 ACCATATAGAGCCTCGTAAGGTG
586 ACCATATAGAGCCTCGTAAGGTG
32314 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
1 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
32379 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
66 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
32444 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
131 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
32509 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
196 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
32574 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
261 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
32639 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
326 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
32704 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
391 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
32769 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
456 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
32834 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
521 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
32899 ACCATATAGAGCCTCGTAAGGTG
586 ACCATATAGAGCCTCGTAAGGTG
32922 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
1 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
32987 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
66 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
33052 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
131 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
33117 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
196 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
33182 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
261 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
33247 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
326 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
33312 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
391 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
33377 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
456 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
33442 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
521 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
33507 ACCATATAGAGCCTCGTAAGGTG
586 ACCATATAGAGCCTCGTAAGGTG
33530 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
1 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
33595 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
66 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
33660 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
131 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
33725 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
196 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
33790 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
261 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
33855 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
326 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
33920 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
391 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
33985 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
456 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
34050 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
521 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
34115 ACCATATAGAGCCTCGTAAGGTG
586 ACCATATAGAGCCTCGTAAGGTG
34138 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
1 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
34203 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
66 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
34268 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
131 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
34333 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
196 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
34398 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
261 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
34463 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
326 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
34528 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
391 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
34593 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
456 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
34658 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
521 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
34723 ACCATATAGAGCCTCGTAAGGTG
586 ACCATATAGAGCCTCGTAAGGTG
34746 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
1 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
34811 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
66 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
34876 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
131 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
34941 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
196 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
35006 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
261 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
35071 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
326 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
35136 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
391 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
35201 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
456 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
35266 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
521 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
35331 ACCATATAGAGCCTCGTAAGGTG
586 ACCATATAGAGCCTCGTAAGGTG
35354 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
1 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
35419 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
66 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
35484 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
131 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
35549 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
196 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
35614 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
261 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
35679 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
326 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
35744 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
391 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
35809 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
456 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
35874 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
521 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
35939 ACCATATAGAGCCTCGTAAGGTG
586 ACCATATAGAGCCTCGTAAGGTG
35962 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
1 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
36027 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
66 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
36092 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
131 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
36157 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
196 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
36222 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
261 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
36287 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
326 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
36352 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
391 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
36417 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
456 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
36482 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
521 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
36547 ACCATATAGAGCCTCGTAAGGTG
586 ACCATATAGAGCCTCGTAAGGTG
36570 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
1 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
36635 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
66 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
36700 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
131 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
36765 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
196 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
36830 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
261 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
36895 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
326 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
36960 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
391 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
37025 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
456 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
37090 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
521 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
37155 ACCATATAGAGCCTCGTAAGGTG
586 ACCATATAGAGCCTCGTAAGGTG
37178 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
1 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
37243 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
66 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
37308 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
131 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
37373 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
196 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
37438 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
261 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
37503 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
326 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
37568 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
391 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
37633 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
456 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
37698 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
521 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
37763 ACCATATAGAGCCTCGTAAGGTG
586 ACCATATAGAGCCTCGTAAGGTG
37786 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
1 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
37851 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
66 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
37916 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
131 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
37981 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
196 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
38046 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
261 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
38111 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
326 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
38176 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
391 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
38241 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
456 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
38306 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
521 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
38371 ACCATATAGAGCCTCGTAAGGTG
586 ACCATATAGAGCCTCGTAAGGTG
38394 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
1 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
38459 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
66 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
38524 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
131 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
38589 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
196 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
38654 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
261 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
38719 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
326 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
38784 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
391 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
38849 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
456 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
38914 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
521 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
38979 ACCATATAGAGCCTCGTAAGGTG
586 ACCATATAGAGCCTCGTAAGGTG
39002 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
1 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
39067 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
66 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
39132 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
131 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
39197 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
196 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
39262 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
261 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
39327 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
326 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
39392 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
391 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
39457 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
456 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
39522 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
521 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
39587 ACCATATAGAGCCTCGTAAGGTG
586 ACCATATAGAGCCTCGTAAGGTG
39610 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
1 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
39675 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
66 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
39740 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
131 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
39805 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
196 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
39870 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
261 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
39935 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
326 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
40000 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
391 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
40065 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
456 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
40130 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
521 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
40195 ACCATATAGAGCCTCGTAAGGTG
586 ACCATATAGAGCCTCGTAAGGTG
40218 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
1 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
40283 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
66 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
40348 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
131 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
40413 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
196 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
40478 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
261 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
40543 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
326 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
40608 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
391 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
40673 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
456 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
40738 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
521 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
40803 ACCATATAGAGCCTCGTAAGGTG
586 ACCATATAGAGCCTCGTAAGGTG
40826 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
1 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
40891 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
66 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
40956 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
131 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
41021 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
196 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
41086 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
261 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
41151 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
326 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
41216 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
391 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
41281 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
456 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
41346 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
521 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
41411 ACCATATAGAGCCTCGTAAGGTG
586 ACCATATAGAGCCTCGTAAGGTG
41434 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
1 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
41499 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
66 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
41564 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
131 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
41629 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
196 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
41694 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
261 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
41759 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
326 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
41824 AAGAAATACAAAGT-CCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
391 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
41888 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
456 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
41953 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
521 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
42018 ACCATATAGAGCCTCGTAAGGTG
586 ACCATATAGAGCCTCGTAAGGTG
42041 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
1 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
42106 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
66 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
42171 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
131 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
42236 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
196 GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
42301 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
261 CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
42366 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
326 AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
42431 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
391 AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
42496 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
456 ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
42561 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
521 AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
42626 ACCATATAGAGCCTCGTAAGGTG
586 ACCATATAGAGCCTCGTAAGGTG
42649 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGT-AAAAATCCTCC
1 CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
*
42713 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCTTCTAGTATATGAATCACCCTCTC
66 CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
42778 AAATTGACCA----TC-------GGAACGCAGTACTGAAGTTCAATCTCGAACCCAGA-CGCTTG
131 AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGC-CTTG
42831 TGAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAA-
195 TGAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAAC
42895 -CCA-GCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAAC--TT--AGAGAGTAGTCCATCT
260 CCCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCT
42954 GAACAGGAATAA
325 GAACAGGAATAA
42966 TTTATAATGA
Statistics
Matches: 12471, Mismatches: 2, Indels: 24
1.00 0.00 0.00
Matches are distributed among these distances:
589 28 0.00
591 2 0.00
593 38 0.00
594 3 0.00
595 1 0.00
596 103 0.01
603 2 0.00
607 1095 0.09
608 11199 0.90
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.26
Consensus pattern (608 bp):
CCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCC
CAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTC
AAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCAGAGCCTTGT
GAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACC
CCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTG
AACAGGAATAAAATGAGCGGACTTGGTCAACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTT
AAGAAATACAAAGTCCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCT
ATCTATCAGAAGACGCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACC
AACTCAGGACCCAAAACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATG
ACCATATAGAGCCTCGTAAGGTG
Found at i:43974 original size:39 final size:40
Alignment explanation
Indices: 43897--44043 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
43887 TAGCTCCTCG
* * *
43897 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
43937 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
43976 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
44016 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
44044 ATTAACTCGC
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:44080 original size:37 final size:37
Alignment explanation
Indices: 43940--44120 Score: 168
Period size: 40 Copynumber: 4.6 Consensus size: 37
43930 TAACTCATTC
* *
43940 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATT--AACTCGCACA
43980 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTA--A-CTCGCACA
*
44020 AAGGCCTTCGGGACTTAACCCGGAATTAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAACTCGCACA
* ** * *
44057 AATACCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGA-AT--TAAC-TCGCACA
*
44098 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
44121 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 11, Indels: 18
0.81 0.07 0.12
Matches are distributed among these distances:
36 3 0.02
37 25 0.21
38 3 0.02
39 3 0.02
40 76 0.63
41 11 0.09
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (37 bp):
AATGCCTTCGGGACTTAACCCGGAATTAACTCGCACA
Found at i:44080 original size:77 final size:79
Alignment explanation
Indices: 43943--44120 Score: 206
Period size: 77 Copynumber: 2.3 Consensus size: 79
43933 CTCATTCAAT
* * *
43943 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGGA-ATT
1 GCCTTCGGGACTTAACCCGGATATT-AAACTCGCACAAATACCTTCGGGACTTAACCCGGATA-T
*
44007 AGT-A-TCTCGCACAAA
64 AGTCACT-TAGCACAAA
**
44022 GGCCTTCGGGACTTAACCCGGA-ATT-AACTCGCACAAATACCTTC-GGATCTTAGTCCGGATAT
1 -GCCTTCGGGACTTAACCCGGATATTAAACTCGCACAAATACCTTCGGGA-CTTAACCCGGATAT
44084 AGTCACTTAGCACAAA
64 AGTCACTTAGCACAAA
*
44100 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
44121 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 7, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
76 3 0.03
77 50 0.57
78 10 0.11
79 3 0.03
80 21 0.24
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (79 bp):
GCCTTCGGGACTTAACCCGGATATTAAACTCGCACAAATACCTTCGGGACTTAACCCGGATATAG
TCACTTAGCACAAA
Found at i:51811 original size:78 final size:76
Alignment explanation
Indices: 51713--51930 Score: 231
Period size: 78 Copynumber: 2.8 Consensus size: 76
51703 CTCGTTCAAG
* ** * *
51713 TGCCTTCGGGACATAGCCCGGTTATAGTAACTCATTCAATGCCTTCGGGACTTAACCCGGATTTA
1 TGCCTTCGGGACTTAGCCCGG-TATAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGAATT-
*
51778 AAACTCGCACGAA
64 AAACTCGCACAAA
* * * *
51791 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCACACAAA-GCCTTCGGGACTTAACCCGGAATT
*
51856 AATCTCGCACAAA
64 AAACTCGCACAAA
* * * *
51869 TGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CTTAGCCCGG-TATAGTAACTCA-CACAAAGCCTTCGGGACTTAACCCGGA
51931 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
77 4 0.03
78 82 0.71
79 30 0.26
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (76 bp):
TGCCTTCGGGACTTAGCCCGGTATAGTAACTCACACAAAGCCTTCGGGACTTAACCCGGAATTAA
ACTCGCACAAA
Found at i:51836 original size:40 final size:39
Alignment explanation
Indices: 51750--51877 Score: 195
Period size: 40 Copynumber: 3.3 Consensus size: 39
51740 TAACTCATTC
* * * *
51750 AATGCCTTCGGGACTTAACCCGGATTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGAATTATATCTCGCACA
51789 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTA-TATCTCGCACA
*
51829 AAGGCCTTCGGGACTTAACCCGGAATTA-ATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTATATCTCGCACA
51867 AATGCCTTCGG
1 AATGCCTTCGG
51878 ATCTTAGTCC
Statistics
Matches: 82, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 20 0.24
39 27 0.33
40 35 0.43
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGAATTATATCTCGCACA
Done.