Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold903

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 22949
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37


Found at i:22361 original size:7 final size:7

Alignment explanation


    Indices: 22351--22380  Score: 51
    Period size: 7  Copynumber: 4.3  Consensus size: 7

      22341 CACCCACCCG

                   
      22351 CTCACTT
          1 CTCACTT

                   
      22358 CTCACTT
          1 CTCACTT

                   
      22365 CTCACTT
          1 CTCACTT

               *   
      22372 CTCTCTT
          1 CTCACTT

              
      22379 CT
          1 CT

      22381 TCTTCTCTCT


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   7   22  1.00

ACGTcount: A:0.10, C:0.43, G:0.00, T:0.47


Consensus pattern (7 bp):   
CTCACTT

Done.