Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold643
Parameters: 2 7 7 80 10 50 1000
Length:  40929

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1155--1192
9
4.3
9
80
6
51
55
28
2
13
1.51
1155--1193
8
4.6
8
81
12
51
53
30
2
12
1.52
4699--4858
48
3.3
48
82
0
194
48
21
21
9
1.78
7495--7534
21
1.9
21
85
10
55
37
2
2
57
1.26
8022--8080
25
2.2
28
85
8
79
33
0
1
64
1.04
8573--8675
51
2.0
51
100
0
206
44
3
1
49
1.31
8591--8673
24
3.3
24
64
26
64
43
2
1
53
1.21
9919--10020
45
2.3
45
81
8
120
54
1
9
33
1.44
9959--10113
47
3.3
46
69
9
107
54
1
7
36
1.38
11664--11731
31
2.3
28
78
9
73
54
1
2
41
1.24
11862--11900
20
2.0
19
90
5
60
76
5
15
2
1.06
12603--12645
18
2.4
18
92
0
68
37
0
9
53
1.33
12605--12649
3
15.0
3
80
0
54
35
0
6
57
1.25
12790--12860
24
2.9
24
78
14
65
43
0
22
33
1.54
13004--13099
39
2.5
39
80
6
108
20
23
28
27
1.99
19090--19167
28
2.7
29
74
9
70
53
1
2
42
1.22
19101--19168
31
2.3
28
78
9
73
54
1
2
41
1.24
20042--20090
18
2.7
18
93
0
80
36
0
8
55
1.30
20044--20091
3
16.0
3
82
0
60
35
0
6
58
1.23
20044--20091
12
4.0
12
91
0
69
35
0
6
58
1.23
20232--20303
24
2.9
24
78
15
67
44
0
22
33
1.53
20665--20704
12
3.3
12
85
0
53
45
0
25
30
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25153--25380
44
5.2
44
93
0
357
22
32
15
29
1.95
29398--29445
19
2.5
19
86
0
78
39
16
22
20
1.92
30980--31299
46
7.0
46
91
0
444
21
24
15
39
1.92
32998--33030
11
3.1
11
82
8
50
9
30
0
60
1.27
33448--33484
20
1.9
20
88
5
58
51
8
0
40
1.32

Tables:   1

The End!