Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold3353
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38271
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Found at i:683 original size:1 final size:1
Alignment explanation
Indices: 677--1731 Score: 1948
Period size: 1 Copynumber: 1055.0 Consensus size: 1
667 CAGAGCTGGG
* *
677 AAAAAAAAAGAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
742 CAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
807 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
872 AAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
937 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAATAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1002 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
1067 AAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1132 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
**
1197 AAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
1262 AAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
1327 AAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
1392 AAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
1457 AAAAAAATAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
1522 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1587 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1652 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1717 AAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAA
1732 TCCGGACGGC
Statistics
Matches: 1020, Mismatches: 34, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
1 1020 1.00
ACGTcount: A:0.98, C:0.01, G:0.00, T:0.01
Consensus pattern (1 bp):
A
Found at i:7059 original size:40 final size:40
Alignment explanation
Indices: 6822--7045 Score: 301
Period size: 40 Copynumber: 5.6 Consensus size: 40
6812 GAATGATGTT
* * * * *
6822 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATC
1 CGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATC
**
6862 CGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATC
*
6902 CGGGTTAAGCCCCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
6942 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
*
6982 CGAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-C
1 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATC
* *
7022 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGTTAAGTCCCGAAGGCATTTG
7046 AACGAGTAGC
Statistics
Matches: 167, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
40 157 0.94
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
Found at i:13344 original size:27 final size:28
Alignment explanation
Indices: 13299--13371 Score: 96
Period size: 27 Copynumber: 2.7 Consensus size: 28
13289 ACATGATAGT
13299 AAAGAATAGCCTTTGTGGCAAACTCTGA
1 AAAGAATAGCCTTTGTGGCAAACTCTGA
*
13327 AAAGAATA-CCTTTTTGGCAAACTCTGA
1 AAAGAATAGCCTTTGTGGCAAACTCTGA
* * *
13354 ATAG-ATCGCCTTAGTGGC
1 AAAGAATAGCCTTTGTGGC
13372 GTACCCTATC
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
26 2 0.05
27 29 0.74
28 8 0.21
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (28 bp):
AAAGAATAGCCTTTGTGGCAAACTCTGA
Found at i:15851 original size:20 final size:20
Alignment explanation
Indices: 15826--15864 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
15816 TACTTTCTTC
15826 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
15846 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
15865 TAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:16184 original size:50 final size:51
Alignment explanation
Indices: 16120--16305 Score: 155
Period size: 50 Copynumber: 3.6 Consensus size: 51
16110 CTGTACTGCA
* * ** *
16120 AATGCCATATCCCAGATATGGTCTTACATGA-GAGTTCTCATAC-CGGTGCC
1 AATGCCATGTCCCAGACATGGTCTTACATGAGGACCTCTCAT-CTCGGTACC
* * *
16170 CATGCCATGTCCCAGACATGGTCTTAC-GGAGGACCTCTCATCTGGGTACC
1 AATGCCATGTCCCAGACATGGTCTTACATGAGGACCTCTCATCTCGGTACC
* * * **
16220 AACGCCATGTCCCAGACATGGTCTTACATG-GAAACTCTCATAACCTCAATAATACC
1 AATGCCATGTCCCAGACATGGTCTTACATGAGGACCTCTCAT---CTC---GGTACC
*
16276 AATGTCATGTCCCAGACATGGTCTTACATG
1 AATGCCATGTCCCAGACATGGTCTTACATG
16306 GGGTCTCATG
Statistics
Matches: 109, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
49 3 0.03
50 71 0.65
51 1 0.01
53 2 0.02
56 32 0.29
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (51 bp):
AATGCCATGTCCCAGACATGGTCTTACATGAGGACCTCTCATCTCGGTACC
Found at i:19210 original size:17 final size:18
Alignment explanation
Indices: 19190--19227 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
19180 TTAGAATTGG
*
19190 ATTGAGA-AAATAATTTA
1 ATTGAGAGAAATAATTAA
*
19207 ATTGAGAGAATTAATTAA
1 ATTGAGAGAAATAATTAA
19225 ATT
1 ATT
19228 TATTTTAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (18 bp):
ATTGAGAGAAATAATTAA
Found at i:25558 original size:48 final size:48
Alignment explanation
Indices: 25487--25635 Score: 158
Period size: 48 Copynumber: 3.1 Consensus size: 48
25477 TACTATGCGT
* *
25487 ACCGATATTCTTTTATGACACAAGGGTGGCACGAACTGTGTGCAGGCC
1 ACCGATATTCTGTTATGACACAAGGGTGACACGAACTGTGTGCAGGCC
* * *
25535 ACCGATATTCTGTTATGATACAAGGGTGACACGGACTGTGTGCAGGCT
1 ACCGATATTCTGTTATGACACAAGGGTGACACGAACTGTGTGCAGGCC
* * * * * * *
25583 ACCGAGAATCTATTATTACACAAAGGTGGTACA-G-ACTGTGTACAAGCC
1 ACCGATATTCTGTTATGACACAAGGGT-G-ACACGAACTGTGTGCAGGCC
25631 ACCGA
1 ACCGA
25636 GAAATTTGTT
Statistics
Matches: 85, Mismatches: 14, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
48 80 0.94
49 2 0.02
50 3 0.04
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (48 bp):
ACCGATATTCTGTTATGACACAAGGGTGACACGAACTGTGTGCAGGCC
Found at i:25988 original size:20 final size:20
Alignment explanation
Indices: 25941--25989 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
25931 AATAAGCGTG
* *
25941 GAAAGTAAAGAAATGGAAAT
1 GAAAATAAAGAAATCGAAAT
25961 GAAAATAAAGAAATTCGAAA-
1 GAAAATAAAGAAA-TCGAAAT
*
25981 GAATATAAA
1 GAAAATAAA
25990 ATTGTTTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 20 0.80
21 5 0.20
ACGTcount: A:0.63, C:0.02, G:0.18, T:0.16
Consensus pattern (20 bp):
GAAAATAAAGAAATCGAAAT
Found at i:29458 original size:27 final size:27
Alignment explanation
Indices: 29390--29524 Score: 103
Period size: 27 Copynumber: 5.0 Consensus size: 27
29380 CAAACACTAG
* *
29390 CTCGCCAGACCTACTGGCGTACACCAT
1 CTCGCCAGACTTGCTGGCGTACACCAT
* *
29417 ATCGCCAGAGC-TGCTGGCTTACACCAT
1 CTCGCCAGA-CTTGCTGGCGTACACCAT
* * *
29444 CTCCCCAGACTTGCTAGCGTACATCAT
1 CTCGCCAGACTTGCTGGCGTACACCAT
* * * * *
29471 CTTGCCAAACCTT-CTGGCATATAGCAT
1 CTCGCCAGA-CTTGCTGGCGTACACCAT
* * *
29498 CTCACCAGACTTGCTAGCGCACACCAT
1 CTCGCCAGACTTGCTGGCGTACACCAT
29525 ATTGTCAGAC
Statistics
Matches: 81, Mismatches: 23, Indels: 8
0.72 0.21 0.07
Matches are distributed among these distances:
26 4 0.05
27 73 0.90
28 4 0.05
ACGTcount: A:0.24, C:0.36, G:0.17, T:0.23
Consensus pattern (27 bp):
CTCGCCAGACTTGCTGGCGTACACCAT
Found at i:29464 original size:54 final size:54
Alignment explanation
Indices: 29406--29526 Score: 143
Period size: 54 Copynumber: 2.2 Consensus size: 54
29396 AGACCTACTG
* * * *
29406 GCGTACACCATATCGCCAGAGCTGCTGGCTTACACCATCTCCCCAGACTTGCTA
1 GCGTACACCATATCGCCAAACCTGCTGGCATACACCATCTCACCAGACTTGCTA
* * * * * *
29460 GCGTACATCATCTTGCCAAACCTTCTGGCATATAGCATCTCACCAGACTTGCTA
1 GCGTACACCATATCGCCAAACCTGCTGGCATACACCATCTCACCAGACTTGCTA
*
29514 GCGCACACCATAT
1 GCGTACACCATAT
29527 TGTCAGACTT
Statistics
Matches: 54, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.24
Consensus pattern (54 bp):
GCGTACACCATATCGCCAAACCTGCTGGCATACACCATCTCACCAGACTTGCTA
Found at i:31696 original size:13 final size:13
Alignment explanation
Indices: 31680--31812 Score: 74
Period size: 13 Copynumber: 9.9 Consensus size: 13
31670 GAAAAATGAA
31680 TATATGGAATGGT
1 TATATGGAATGGT
* *
31693 TATAT-AAATCGAT
1 TATATGGAAT-GGT
*
31706 TATATGGAAAATGGA
1 TATATGG--AATGGT
*
31721 TATATGAAATGGT
1 TATATGGAATGGT
*
31734 TACAT-GAATCGGT
1 TATATGGAAT-GGT
* * *
31747 TATATGAAAATAGA
1 TATATG-GAATGGT
*
31761 TATATGAAATGGT
1 TATATGGAATGGT
*
31774 TATAT-GAACCGGT
1 TATATGGAA-TGGT
* *
31787 TATATGGAAATAGA
1 TATATGG-AATGGT
31801 TATATGGAATGG
1 TATATGGAATGG
31813 AACATTGGAT
Statistics
Matches: 89, Mismatches: 21, Indels: 20
0.68 0.16 0.15
Matches are distributed among these distances:
12 8 0.09
13 50 0.56
14 16 0.18
15 12 0.13
16 3 0.03
ACGTcount: A:0.41, C:0.04, G:0.23, T:0.33
Consensus pattern (13 bp):
TATATGGAATGGT
Found at i:31767 original size:40 final size:40
Alignment explanation
Indices: 31679--31812 Score: 187
Period size: 40 Copynumber: 3.3 Consensus size: 40
31669 TGAAAAATGA
* * * *
31679 ATATATGGAATGGTTATATAAATCGATTATATGGAAAATGG
1 ATATATGAAATGGTTATATGAATCGGTTATAT-GAAAATAG
*
31720 ATATATGAAATGGTTACATGAATCGGTTATATGAAAATAG
1 ATATATGAAATGGTTATATGAATCGGTTATATGAAAATAG
* *
31760 ATATATGAAATGGTTATATGAACCGGTTATATGGAAATAG
1 ATATATGAAATGGTTATATGAATCGGTTATATGAAAATAG
*
31800 ATATATGGAATGG
1 ATATATGAAATGG
31813 AACATTGGAT
Statistics
Matches: 84, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
40 56 0.67
41 28 0.33
ACGTcount: A:0.41, C:0.04, G:0.22, T:0.33
Consensus pattern (40 bp):
ATATATGAAATGGTTATATGAATCGGTTATATGAAAATAG
Found at i:33379 original size:39 final size:40
Alignment explanation
Indices: 33257--33480 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
33247 GCTACTCGTT
* *
33257 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * *
33297 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
33337 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
33376 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
33415 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
33456 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
33481 CATCATTCAA
Statistics
Matches: 162, Mismatches: 15, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
38 2 0.01
39 72 0.44
40 75 0.46
41 13 0.08
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:33434 original size:79 final size:80
Alignment explanation
Indices: 33257--33480 Score: 260
Period size: 79 Copynumber: 2.8 Consensus size: 80
33247 GCTACTCGTT
* * *
33257 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCG
1 CAAATGCCTTC-GGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
*
33321 GATTTAGTAACTCGCA
65 GAATTAGTAACTCGCA
* * * *
33337 CAAATGCCTTCGGGCTTAGCCCGGAAT-TAGTATCTCGTACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
33400 AATTAGTATCTCGCA
66 AATTAGTAACTCGCA
* * * * *
33415 CAAATGCCTTCGGATCTTAGTCCGG-ATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGA-CTTAGCCCGGAATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCC
33478 GGA
64 GGA
33481 CATCATTCAA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
78 37 0.30
79 56 0.46
80 30 0.24
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
AATTAGTAACTCGCA
Found at i:33464 original size:118 final size:120
Alignment explanation
Indices: 33251--33480 Score: 299
Period size: 118 Copynumber: 1.9 Consensus size: 120
33241 GATATAGCTA
* * *
33251 CTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTA
1 CTCGTACAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTA
* *
33316 ACCCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAT
66 ACCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAT
* *
33370 CTCGTACAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCT
1 CTCGTACAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CT
** * *
33432 TAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 TAACCCGGATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAGCCCGGA
33481 CATCATTCAA
Statistics
Matches: 96, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
117 4 0.04
118 54 0.56
119 38 0.40
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (120 bp):
CTCGTACAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTA
ACCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAT
Done.