Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60343961
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 596159 characters in sequence are not A, C, G, or T
File 103 of 204
Found at i:32001636 original size:17 final size:19
Alignment explanation
Indices: 32001611--32001758 Score: 86
Period size: 22 Copynumber: 7.2 Consensus size: 19
32001601 ACATAACTTA
32001611 TTAATATATATTTTAAAA-
1 TTAATATATATTTTAAAAT
32001629 TT-ATATATATTTTTAAAAT
1 TTAATATATA-TTTTAAAAT
*
32001648 TTAATATATATATTTTTAAAT
1 TT-A-ATATATATTTTAAAAT
* *
32001669 TTAATTTAGCTTATTAATTTAACAT
1 TTAA--TA---TA-TATTTTAAAAT
**
32001694 ATTAATATATATAATTTAACGT
1 -TTAATATATAT--TTTAAAAT
*
32001716 ATTAATATATATATTAAAAAT
1 -TTAATATATAT-TTTAAAAT
32001737 TT-ATATATATTTTAAAAAT
1 TTAATATATATTTT-AAAAT
32001756 TTA
1 TTA
32001759 TCAATCATAT
Statistics
Matches: 104, Mismatches: 10, Indels: 30
0.72 0.07 0.21
Matches are distributed among these distances:
17 7 0.07
18 12 0.12
19 18 0.17
20 5 0.05
21 20 0.19
22 26 0.25
24 4 0.04
25 8 0.08
26 4 0.04
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.51
Consensus pattern (19 bp):
TTAATATATATTTTAAAAT
Found at i:32001839 original size:12 final size:12
Alignment explanation
Indices: 32001770--32001915 Score: 69
Period size: 12 Copynumber: 12.2 Consensus size: 12
32001760 CAATCATATC
32001770 ATAACTTACATA
1 ATAACTTACATA
*
32001782 CATAACTTAAATA
1 -ATAACTTACATA
* *
32001795 A-AATTTATAT-
1 ATAACTTACATA
32001805 ATAAACTTACACAATA
1 AT-AACTT--AC-ATA
32001821 CATAACTTACATA
1 -ATAACTTACATA
32001834 ATAACTTAC---
1 ATAACTTACATA
*
32001843 ATAACTTATAT-
1 ATAACTTACATA
*
32001854 ATAAACTTATAT-
1 AT-AACTTACATA
*
32001866 ATAAACTTATAT-
1 AT-AACTTACATA
*
32001878 ATAACTTTCATA
1 ATAACTTACATA
*
32001890 ACTTACTT--ATA
1 A-TAACTTACATA
32001901 ATAACTTACATA
1 ATAACTTACATA
32001913 ATA
1 ATA
32001916 CATAGCCTAC
Statistics
Matches: 109, Mismatches: 10, Indels: 29
0.74 0.07 0.20
Matches are distributed among these distances:
9 8 0.07
10 6 0.06
11 20 0.18
12 44 0.40
13 19 0.17
14 3 0.03
15 2 0.02
16 5 0.05
17 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (12 bp):
ATAACTTACATA
Found at i:32001868 original size:14 final size:12
Alignment explanation
Indices: 32001845--32001881 Score: 74
Period size: 12 Copynumber: 3.1 Consensus size: 12
32001835 TAACTTACAT
32001845 AACTTATATATA
1 AACTTATATATA
32001857 AACTTATATATA
1 AACTTATATATA
32001869 AACTTATATATA
1 AACTTATATATA
32001881 A
1 A
32001882 CTTTCATAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (12 bp):
AACTTATATATA
Found at i:32001967 original size:59 final size:59
Alignment explanation
Indices: 32001894--32002073 Score: 216
Period size: 59 Copynumber: 3.0 Consensus size: 59
32001884 TTCATAACTT
* * *
32001894 ACTTATAATAACTTACATAATACATAGCCTACATGACTTACATAATACACAACTTACATA
1 ACTTA-AATAACTTACATAATACATAACTTACATAACTTACATAATACACAACTTACATA
* * * *
32001954 ACTTAAATAACTTATATGATACATAACTTCCATAACTTACATTATACACAACTTACATA
1 ACTTAAATAACTTACATAATACATAACTTACATAACTTACATAATACACAACTTACATA
* ** ** * * *
32002013 ACTTACATAGTTTACATTCTACACAACTTATATAACATACATAATACACAACTTACATA
1 ACTTAAATAACTTACATAATACATAACTTACATAACTTACATAATACACAACTTACATA
32002072 AC
1 AC
32002074 ATACATAATA
Statistics
Matches: 102, Mismatches: 18, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
59 97 0.95
60 5 0.05
ACGTcount: A:0.44, C:0.22, G:0.02, T:0.32
Consensus pattern (59 bp):
ACTTAAATAACTTACATAATACATAACTTACATAACTTACATAATACACAACTTACATA
Found at i:32001976 original size:25 final size:25
Alignment explanation
Indices: 32001878--32002020 Score: 109
Period size: 25 Copynumber: 5.8 Consensus size: 25
32001868 AAACTTATAT
* *
32001878 ATAACTTTCATAACTTAC-TTATA-
1 ATAACTTACATAACTTACATGATAC
*
32001901 ATAACTTACATAA--TACATAGCCTAC
1 ATAACTTACATAACTTACAT-G-ATAC
* **
32001926 ATGACTTACATAA--TACACAACTTAC
1 ATAACTTACATAACTTACATGA--TAC
* *
32001951 ATAACTTAAATAACTTATATGATAC
1 ATAACTTACATAACTTACATGATAC
* *
32001976 ATAACTTCCATAACTTACATTATAC
1 ATAACTTACATAACTTACATGATAC
*
32002001 ACAACTTACATAACTTACAT
1 ATAACTTACATAACTTACAT
32002021 AGTTTACATT
Statistics
Matches: 94, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
21 3 0.03
22 1 0.01
23 12 0.13
24 2 0.02
25 72 0.77
27 4 0.04
ACGTcount: A:0.43, C:0.21, G:0.02, T:0.34
Consensus pattern (25 bp):
ATAACTTACATAACTTACATGATAC
Found at i:32002011 original size:34 final size:34
Alignment explanation
Indices: 32001973--32002056 Score: 114
Period size: 34 Copynumber: 2.5 Consensus size: 34
32001963 ACTTATATGA
*
32001973 TACATAACTTCCATAACTTACATTATACACAACT
1 TACATAACTTACATAACTTACATTATACACAACT
** *
32002007 TACATAACTTACATAGTTTACATTCTACACAACT
1 TACATAACTTACATAACTTACATTATACACAACT
* *
32002041 TATATAACATACATAA
1 TACATAACTTACATAA
32002057 TACACAACTT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.43, C:0.23, G:0.01, T:0.33
Consensus pattern (34 bp):
TACATAACTTACATAACTTACATTATACACAACT
Found at i:32002085 original size:16 final size:16
Alignment explanation
Indices: 32001923--32002144 Score: 88
Period size: 16 Copynumber: 13.8 Consensus size: 16
32001913 ATACATAGCC
*
32001923 TACATGACTTACATAA
1 TACATAACTTACATAA
*
32001939 TACACAACTTACATAA
1 TACATAACTTACATAA
* * *
32001955 CTTAAATAACTTATATGA
1 --TACATAACTTACATAA
32001973 TACATAACTT-C----
1 TACATAACTTACATAA
*
32001984 --CATAACTTACATTA
1 TACATAACTTACATAA
*
32001998 TACACAACTTACATAA
1 TACATAACTTACATAA
** **
32002014 CTTACATAGTTTACATTC
1 --TACATAACTTACATAA
* *
32002032 TACACAACTTATATAACA
1 TACATAACTTACAT-A-A
*
32002050 TACATAA--TACACAA
1 TACATAACTTACATAA
*
32002064 CTTACATAACATACATAA
1 --TACATAACTTACATAA
*
32002082 TACATAACTTACATAGC
1 TACATAACTTACATA-A
**
32002099 TA-ATATA-AAACATAA
1 TACATA-ACTTACATAA
*
32002114 CTTACATAACTTATATAA
1 --TACATAACTTACATAA
32002132 TACATAACTTACA
1 TACATAACTTACA
32002145 CAATTTACTT
Statistics
Matches: 149, Mismatches: 34, Indels: 46
0.65 0.15 0.20
Matches are distributed among these distances:
9 8 0.05
10 1 0.01
14 1 0.01
15 1 0.01
16 89 0.60
17 6 0.04
18 43 0.29
ACGTcount: A:0.46, C:0.20, G:0.02, T:0.32
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:32002157 original size:25 final size:26
Alignment explanation
Indices: 32002007--32002163 Score: 146
Period size: 25 Copynumber: 6.3 Consensus size: 26
32001997 ATACACAACT
** **
32002007 TACATAACTTACATAGTTTAC-ATTC
1 TACATAACTTACATAACTTACTATAA
* * *
32002032 TACACAACTTATATAACATAC-ATAA
1 TACATAACTTACATAACTTACTATAA
* *
32002057 TACACAACTTACATAACATAC-ATAA
1 TACATAACTTACATAACTTACTATAA
* *
32002082 TACATAACTTACATAGC-TAATATAA
1 TACATAACTTACATAACTTACTATAA
*
32002107 AACATAACTTACATAACTTA-TATAA
1 TACATAACTTACATAACTTACTATAA
* *
32002132 TACATAACTTACACAATTTACT-TAA
1 TACATAACTTACATAACTTACTATAA
32002157 TACATAA
1 TACATAA
32002164 ATATATATCA
Statistics
Matches: 113, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
24 2 0.02
25 108 0.96
26 3 0.03
ACGTcount: A:0.48, C:0.19, G:0.01, T:0.32
Consensus pattern (26 bp):
TACATAACTTACATAACTTACTATAA
Found at i:32007686 original size:21 final size:21
Alignment explanation
Indices: 32007660--32007706 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
32007650 AACTTAAAGT
*
32007660 AGAGGCGGCAGCGAGGGAAGC
1 AGAGGCGGCAGCGAGAGAAGC
*
32007681 AGAGGCTGCAGCGAGAGAAGC
1 AGAGGCGGCAGCGAGAGAAGC
32007702 AGAGG
1 AGAGG
32007707 TTCAAAAGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.32, C:0.17, G:0.49, T:0.02
Consensus pattern (21 bp):
AGAGGCGGCAGCGAGAGAAGC
Found at i:32007767 original size:87 final size:87
Alignment explanation
Indices: 32007616--32007792 Score: 273
Period size: 87 Copynumber: 2.0 Consensus size: 87
32007606 GACCATAGTT
* * * *
32007616 GAGGTTCAAAGGAAATATGAAGAACTCTAGCTACAACTTAAAGTAGAGGCGGCAGCGAGGGAAGC
1 GAGGTTCAAAAGAAATATGAAGAACTCTAGCAACAACTTAAAGCAGAGGCGGCAGCGAGAGAAGC
32007681 AGAGGCTGCAGCGAGAGAAGCA
66 AGAGGCTGCAGCGAGAGAAGCA
* * * *
32007703 GAGGTTCAAAAGAAATATGAAGAACTCTAGCAACAATTTAAAGCAGATGTGGCATCGAGAGAAGC
1 GAGGTTCAAAAGAAATATGAAGAACTCTAGCAACAACTTAAAGCAGAGGCGGCAGCGAGAGAAGC
*
32007768 AGAGGCTGCAGCGAGGGAAGCA
66 AGAGGCTGCAGCGAGAGAAGCA
32007790 GAG
1 GAG
32007793 CAGAGCAGAA
Statistics
Matches: 81, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
87 81 1.00
ACGTcount: A:0.39, C:0.15, G:0.32, T:0.14
Consensus pattern (87 bp):
GAGGTTCAAAAGAAATATGAAGAACTCTAGCAACAACTTAAAGCAGAGGCGGCAGCGAGAGAAGC
AGAGGCTGCAGCGAGAGAAGCA
Found at i:32008259 original size:43 final size:43
Alignment explanation
Indices: 32008182--32008388 Score: 249
Period size: 43 Copynumber: 4.8 Consensus size: 43
32008172 AGAACATGAC
* *
32008182 CTTTACCGGCGTTTGTGGGAAAAAACGCCGCTAAAAGTCATGCT
1 CTTTAGCGGCGTTTGT-GGAAAAAACGCCGCTAAAAGTCATGTT
* * *
32008226 CTATAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAAGTCATATT
1 CTTTAGCGGCGTTTGTGGAAAAAACGCCGCTAAAAGTCATGTT
* * *
32008269 CTTTAGCGGCGTTTGTTGG-AGAAGCACCGCTAAAAGTCATGTT
1 CTTTAGCGGCGTTTG-TGGAAAAAACGCCGCTAAAAGTCATGTT
* * * *
32008312 CTTTAGTGGCGTTTGTGAAAAAAACGCCGCT-AAAGAACATGTC
1 CTTTAGCGGCGTTTGTGGAAAAAACGCCGCTAAAAG-TCATGTT
32008355 CTTTAGCGGCGTTTGTAGG-AAAAACGCCGCTAAA
1 CTTTAGCGGCGTTTGT-GGAAAAAACGCCGCTAAA
32008389 GAACATGACC
Statistics
Matches: 140, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
42 6 0.04
43 114 0.81
44 20 0.14
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.26
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGTGGAAAAAACGCCGCTAAAAGTCATGTT
Found at i:32008334 original size:86 final size:86
Alignment explanation
Indices: 32008168--32008411 Score: 278
Period size: 86 Copynumber: 2.8 Consensus size: 86
32008158 AGAAGCACTT
* * * *
32008168 CTAAAGAACATGA-CCTTTACCGGCGTTTGTGGGAAAAAACGCCGCTAAAAGTCATGCTCTATAG
1 CTAAAGAACAT-ATCCTTTAGCGGCGTTTGTAGG-AAAAACGCCGCTAAAAGTCATGATCTTTAG
* * *
32008232 CGGCGTTTGTGGAAAAAGCGCCG
64 TGGCGTTTGTGAAAAAAACGCCG
* * * * * * *
32008255 CTAAA-AGTCATATTCTTTAGCGGCGTTTGTTGGAGAAGCACCGCTAAAAGTCATGTTCTTTAGT
1 CTAAAGA-ACATATCCTTTAGCGGCGTTTGTAGGAAAAACGCCGCTAAAAGTCATGATCTTTAGT
32008319 GGCGTTTGTGAAAAAAACGCCG
65 GGCGTTTGTGAAAAAAACGCCG
* * *
32008341 CTAAAGAACATGTCCTTTAGCGGCGTTTGTAGGAAAAACGCCGCT-AAAGAACATGACCTTTAGT
1 CTAAAGAACATATCCTTTAGCGGCGTTTGTAGGAAAAACGCCGCTAAAAG-TCATGATCTTTAGT
32008405 GGCGTTT
65 GGCGTTT
32008412 ATTTCTATAA
Statistics
Matches: 131, Mismatches: 22, Indels: 9
0.81 0.14 0.06
Matches are distributed among these distances:
85 4 0.03
86 101 0.77
87 26 0.20
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (86 bp):
CTAAAGAACATATCCTTTAGCGGCGTTTGTAGGAAAAACGCCGCTAAAAGTCATGATCTTTAGTG
GCGTTTGTGAAAAAAACGCCG
Found at i:32008389 original size:43 final size:42
Alignment explanation
Indices: 32008170--32008411 Score: 229
Period size: 43 Copynumber: 5.6 Consensus size: 42
32008160 AAGCACTTCT
* *
32008170 AAAGAACATGACCTTTACCGGCGTTTGTGGGAAAAAACGCCGCTA
1 AAAG-ACATGTCCTTTAGCGGCGTTTGT-GG-AAAAACGCCGCTA
* *
32008215 AAAGTCATG-CTCTATAGCGGCGTTTGTGGAAAAAGCGCCGCTA
1 AAAGACATGTC-CTTTAGCGGCGTTTGTGGAAAAA-CGCCGCTA
* * * * * *
32008258 AAAGTCATATTCTTTAGCGGCGTTTGTTGGAGAAGCACCGCTA
1 AAAGACATGTCCTTTAGCGGCGTTTG-TGGAAAAACGCCGCTA
* * * *
32008301 AAAGTCATGTTCTTTAGTGGCGTTTGTGAAAAAAACGCCGCT-
1 AAAGACATGTCCTTTAGCGGCGTTTGTG-GAAAAACGCCGCTA
32008343 AAAGAACATGTCCTTTAGCGGCGTTTGTAGGAAAAACGCCGCT-
1 AAAG-ACATGTCCTTTAGCGGCGTTTGT-GGAAAAACGCCGCTA
* *
32008386 AAAGAACATGACCTTTAGTGGCGTTT
1 AAAG-ACATGTCCTTTAGCGGCGTTT
32008412 ATTTCTATAA
Statistics
Matches: 169, Mismatches: 21, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
42 11 0.07
43 129 0.76
44 25 0.15
45 4 0.02
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.26
Consensus pattern (42 bp):
AAAGACATGTCCTTTAGCGGCGTTTGTGGAAAAACGCCGCTA
Found at i:32008746 original size:9 final size:9
Alignment explanation
Indices: 32008717--32008753 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
32008707 TGGGTTTTTG
32008717 AATTCGAAT
1 AATTCGAAT
*
32008726 AACTCGAAT
1 AATTCGAAT
32008735 AATTCGAAT
1 AATTCGAAT
*
32008744 AATTTGAAT
1 AATTCGAAT
32008753 A
1 A
32008754 TCAAACTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:32009001 original size:30 final size:31
Alignment explanation
Indices: 32008967--32009026 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
32008957 AAACATTTTA
*
32008967 TTTTTCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTTCCCCAAAACTTTTACTCCCTTCCCAC
* *
32008997 TTTTTCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTTCCCCAAAACTTTTACTCCCTTCCCA
32009027 TGTCACCTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.20, C:0.37, G:0.00, T:0.43
Consensus pattern (31 bp):
TTTTTCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:32011577 original size:6 final size:6
Alignment explanation
Indices: 32011568--32011610 Score: 59
Period size: 6 Copynumber: 7.2 Consensus size: 6
32011558 TATTTCCTAA
* * *
32011568 TTTGAG TTTGAG TTTGAC TTTAAC TTTGAC TTTGAC TTTGAC T
1 TTTGAC TTTGAC TTTGAC TTTGAC TTTGAC TTTGAC TTTGAC T
32011611 AGCGAACCCT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.19, C:0.12, G:0.19, T:0.51
Consensus pattern (6 bp):
TTTGAC
Found at i:32012139 original size:15 final size:15
Alignment explanation
Indices: 32012099--32012135 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
32012089 GTAGAAAAAT
32012099 AATAATAATAATCAA
1 AATAATAATAATCAA
*
32012114 AATGATAATAAT-AA
1 AATAATAATAATCAA
32012128 AATAATAA
1 AATAATAA
32012136 ATAACATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
14 9 0.45
15 11 0.55
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.27
Consensus pattern (15 bp):
AATAATAATAATCAA
Found at i:32015249 original size:42 final size:43
Alignment explanation
Indices: 32015192--32015279 Score: 117
Period size: 42 Copynumber: 2.1 Consensus size: 43
32015182 TAGCGGCATT
* * *
32015192 TTTAGAAATAAACGCCGCTAAAGGTGT-TGGTCTATAGCGGCGC
1 TTTACAAATAAACGCCGCTAAAGAT-TAGGGTCTATAGCGGCGC
*
32015235 TTTACAAA-AAACGCCGCTAAAGATTAGGGTCTTTAGCGGCGC
1 TTTACAAATAAACGCCGCTAAAGATTAGGGTCTATAGCGGCGC
32015277 TTT
1 TTT
32015280 CCCCACAAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
41 1 0.03
42 32 0.80
43 7 0.17
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (43 bp):
TTTACAAATAAACGCCGCTAAAGATTAGGGTCTATAGCGGCGC
Found at i:32015311 original size:43 final size:43
Alignment explanation
Indices: 32015226--32015409 Score: 189
Period size: 43 Copynumber: 4.3 Consensus size: 43
32015216 TGTTGGTCTA
* *
32015226 TAGCGGCGCTTTA-CAAAAAACGCCGCTAAAG-A--TTAGGGTCTT
1 TAGCGGCGCTTTATCCACAAACGCCGCTAAAGAACCTTA---TCTT
** * *
32015268 TAGCGGCGCTTTCCCCACAAACGCCGCAAAAGAACCTGATCTT
1 TAGCGGCGCTTTATCCACAAACGCCGCTAAAGAACCTTATCTT
** *
32015311 TAGCGGTACTTTATCCACAAACGCCGCTAAAGACCCTTATCTT
1 TAGCGGCGCTTTATCCACAAACGCCGCTAAAGAACCTTATCTT
*
32015354 TAGCGGCGCTTTATCCACAAACACCGCTAAAG-ACCATTATCTTT
1 TAGCGGCGCTTTATCCACAAACGCCGCTAAAGAACC-TTATC-TT
*
32015398 TAGCGACGCTTT
1 TAGCGGCGCTTT
32015410 TGTTGAAAAC
Statistics
Matches: 119, Mismatches: 17, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
42 14 0.12
43 89 0.75
44 14 0.12
46 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (43 bp):
TAGCGGCGCTTTATCCACAAACGCCGCTAAAGAACCTTATCTT
Found at i:32015817 original size:66 final size:66
Alignment explanation
Indices: 32015737--32015918 Score: 188
Period size: 66 Copynumber: 2.8 Consensus size: 66
32015727 TCATACTCTG
* *** * *
32015737 AAGCTGCTGTTGGAGTTCATCAAACTTTTTACGCTGCTCTGCTTCTCTCGCTGCCGCATCTACTT
1 AAGCTGCTGCTGGAGTTCATCAAACTTTTTACGAACCTCAGCTTCTCTCGCTACCGCATCTACTT
32015802 T
66 T
* * ** * *
32015803 AAGCTGCTGCTGGAGTTCTTCATACTTTTTTTGAACCTCAGCTTCTCTCGCTACTGCATCTGCTT
1 AAGCTGCTGCTGGAGTTCATCAAACTTTTTACGAACCTCAGCTTCTCTCGCTACCGCATCTACTT
32015868 T
66 T
* * * *
32015869 AAGTTG-TAGCTGGAGTTCTTCATATCTTTTT-TGAACCTCAGCTTCTCTCG
1 AAGCTGCT-GCTGGAGTTCATCA-AACTTTTTACGAACCTCAGCTTCTCTCG
32015919 ATGTTGCCTC
Statistics
Matches: 99, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
65 1 0.01
66 92 0.93
67 6 0.06
ACGTcount: A:0.16, C:0.26, G:0.18, T:0.40
Consensus pattern (66 bp):
AAGCTGCTGCTGGAGTTCATCAAACTTTTTACGAACCTCAGCTTCTCTCGCTACCGCATCTACTT
T
Found at i:32015934 original size:66 final size:66
Alignment explanation
Indices: 32015811--32015941 Score: 201
Period size: 66 Copynumber: 2.0 Consensus size: 66
32015801 TTAAGCTGCT
* *
32015811 GCTGGAGTTCTTCATACTTTTTTTGAACCTCAGCTTCTCTCGCTACTGCATCTGCTTTAAGTTGT
1 GCTGGAGTTCTTCATACTTTTTTTGAACCTCAGCTTCTCTCGATACTGCATCCGCTTTAAGTTGT
32015876 A
66 A
** *
32015877 GCTGGAGTTCTTCATA-TCTTTTTTGAACCTCAGCTTCTCTCGATGTTGCCTCCGCTTTAAGTTG
1 GCTGGAGTTCTTCATACT-TTTTTTGAACCTCAGCTTCTCTCGATACTGCATCCGCTTTAAGTTG
32015941 T
65 T
32015942 GTAATTTGCT
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
65 1 0.02
66 58 0.98
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.43
Consensus pattern (66 bp):
GCTGGAGTTCTTCATACTTTTTTTGAACCTCAGCTTCTCTCGATACTGCATCCGCTTTAAGTTGT
A
Found at i:32021332 original size:9 final size:9
Alignment explanation
Indices: 32021318--32021654 Score: 227
Period size: 9 Copynumber: 39.8 Consensus size: 9
32021308 AATTGCACGA
32021318 GTAAGTTAT
1 GTAAGTTAT
32021327 GTAAGTTAT
1 GTAAGTTAT
*
32021336 TTAAGTTAT
1 GTAAGTTAT
*
32021345 GTAAGTTGT
1 GTAAGTTAT
32021354 GT-A-TTAT
1 GTAAGTTAT
32021361 GTAAGTTAT
1 GTAAGTTAT
*
32021370 -T-A-TTCT
1 GTAAGTTAT
32021376 GTAAGTTAT
1 GTAAGTTAT
* *
32021385 GAAAGTAAT
1 GTAAGTTAT
32021394 GT-A-TTAT
1 GTAAGTTAT
*
32021401 GTAAGTTGT
1 GTAAGTTAT
*
32021410 GT-A-TAAT
1 GTAAGTTAT
*
32021417 GTTAGTTAT
1 GTAAGTTAT
**
32021426 CAAAGTTAT
1 GTAAGTTAT
32021435 GT-A-TTAT
1 GTAAGTTAT
32021442 GTAAGTTAT
1 GTAAGTTAT
*
32021451 TTAAGTTAT
1 GTAAGTTAT
*
32021460 GTAAGTTGT
1 GTAAGTTAT
32021469 GT-A-TTAT
1 GTAAGTTAT
32021476 GTAAGTTAT
1 GTAAGTTAT
* *
32021485 GTAGGCTAT
1 GTAAGTTAT
* *
32021494 GTATGTTAA
1 GTAAGTTAT
*
32021503 GTAAGTAAT
1 GTAAGTTAT
32021512 GT-A-TTAT
1 GTAAGTTAT
*
32021519 GTAAGTTGT
1 GTAAGTTAT
*
32021528 GT-A-TAAT
1 GTAAGTTAT
*
32021535 GTTAGTTAT
1 GTAAGTTAT
**
32021544 CAAAGTTAT
1 GTAAGTTAT
32021553 GT-A-TTAT
1 GTAAGTTAT
32021560 GTAAGTTAT
1 GTAAGTTAT
*
32021569 TTAAGTTAT
1 GTAAGTTAT
*
32021578 GTAAGTTGT
1 GTAAGTTAT
32021587 GT-A-TTAT
1 GTAAGTTAT
32021594 GTAAGTTAT
1 GTAAGTTAT
* *
32021603 GTAGGCTAT
1 GTAAGTTAT
32021612 GT-A-TTAT
1 GTAAGTTAT
32021619 GTAAGTTAT
1 GTAAGTTAT
*
32021628 -TATGTTATTAT
1 GTAAG---TTAT
32021639 GTAAGTTAT
1 GTAAGTTAT
*
32021648 GCAAGTT
1 GTAAGTT
32021655 TATATATAAG
Statistics
Matches: 249, Mismatches: 52, Indels: 54
0.70 0.15 0.15
Matches are distributed among these distances:
6 3 0.01
7 52 0.21
8 24 0.10
9 163 0.65
11 4 0.02
12 3 0.01
ACGTcount: A:0.31, C:0.02, G:0.20, T:0.47
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:32021366 original size:25 final size:26
Alignment explanation
Indices: 32021321--32021635 Score: 177
Period size: 25 Copynumber: 12.6 Consensus size: 26
32021311 TGCACGAGTA
*
32021321 AGTTATGTAAGTTATTTAAGTTATGT
1 AGTTATGTAAGTTATGTAAGTTATGT
*
32021347 AAGTTGTGT-A-TTATGTAAGTTAT-T
1 -AGTTATGTAAGTTATGTAAGTTATGT
* * *
32021371 A-TTCTGTAAGTTATGAAAGTAATGT
1 AGTTATGTAAGTTATGTAAGTTATGT
* *
32021396 A-TTATGTAAGTTGTGT-A-TAATGTT
1 AGTTATGTAAGTTATGTAAGTTATG-T
**
32021420 AGTTATCAAAGTTATGT-A-TTATGT
1 AGTTATGTAAGTTATGTAAGTTATGT
* *
32021444 AAGTTATTTAAGTTATGTAAGTTGTGT
1 -AGTTATGTAAGTTATGTAAGTTATGT
* *
32021471 A-TTATGTAAGTTATGTAGGCTATGT
1 AGTTATGTAAGTTATGTAAGTTATGT
* *
32021496 ATGTTAAGTAAGTAATGT-A-TTATGT
1 A-GTTATGTAAGTTATGTAAGTTATGT
* * * **
32021521 AAGTTGTGT-A-TAATGTTAGTTATCAA
1 -AGTTATGTAAGTTATGTAAGTTAT-GT
*
32021547 AGTTATGT-A-TTATGTAAGTTATTT
1 AGTTATGTAAGTTATGTAAGTTATGT
*
32021571 AAGTTATGTAAGTTGTGT-A-TTATGT
1 -AGTTATGTAAGTTATGTAAGTTATGT
* *
32021596 AAGTTATGTAGGCTATGT-A-TTATGT
1 -AGTTATGTAAGTTATGTAAGTTATGT
*
32021621 AAGTTAT-TATGTTAT
1 -AGTTATGTAAGTTAT
32021636 TATGTAAGTT
Statistics
Matches: 232, Mismatches: 39, Indels: 37
0.75 0.13 0.12
Matches are distributed among these distances:
22 5 0.02
23 13 0.06
24 24 0.10
25 154 0.66
26 6 0.03
27 30 0.13
ACGTcount: A:0.31, C:0.02, G:0.20, T:0.47
Consensus pattern (26 bp):
AGTTATGTAAGTTATGTAAGTTATGT
Found at i:32021378 original size:15 final size:16
Alignment explanation
Indices: 32021323--32021605 Score: 134
Period size: 16 Copynumber: 17.0 Consensus size: 16
32021313 CACGAGTAAG
*
32021323 TTATGTAAGTTATTTAA
1 TTATGTAAGTTATGT-A
*
32021340 GTTATGTAAGTTGTGTA
1 -TTATGTAAGTTATGTA
32021357 TTATGTAAGTTAT-TA
1 TTATGTAAGTTATGTA
* *
32021372 TTCTGTAAGTTATGAAA
1 TTATGTAAGTTATG-TA
*
32021389 GTAATGT-A-TTATGTAA
1 -TTATGTAAGTTATGT-A
* *
32021405 GTTGTGT-A-TAATGTTA
1 -TTATGTAAGTTATG-TA
**
32021421 GTTATCAAAGTTATGTA
1 -TTATGTAAGTTATGTA
*
32021438 TTATGTAAGTTATTTAA
1 TTATGTAAGTTATGT-A
*
32021455 GTTATGTAAGTTGTGTA
1 -TTATGTAAGTTATGTA
32021472 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
* * *
32021488 GGCTATGTATGTTAAGTAA
1 --TTATGTAAGTTATGT-A
*
32021507 GTAATGT-A-TTATGTAA
1 -TTATGTAAGTTATGT-A
* *
32021523 GTTGTGT-A-TAATGTTA
1 -TTATGTAAGTTATG-TA
**
32021539 GTTATCAAAGTTATGTA
1 -TTATGTAAGTTATGTA
*
32021556 TTATGTAAGTTATTTAA
1 TTATGTAAGTTATGT-A
*
32021573 GTTATGTAAGTTGTGTA
1 -TTATGTAAGTTATGTA
32021590 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
32021606 GGCTATGTAT
Statistics
Matches: 207, Mismatches: 41, Indels: 36
0.73 0.14 0.13
Matches are distributed among these distances:
15 14 0.07
16 109 0.53
17 15 0.07
18 68 0.33
19 1 0.00
ACGTcount: A:0.31, C:0.01, G:0.20, T:0.47
Consensus pattern (16 bp):
TTATGTAAGTTATGTA
Found at i:32021551 original size:118 final size:117
Alignment explanation
Indices: 32021323--32021645 Score: 528
Period size: 118 Copynumber: 2.7 Consensus size: 117
32021313 CACGAGTAAG
* *
32021323 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTAT-TA--TTCTGTAAGTTAT
1 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGGCTATGT-AGTTAT
*
32021385 GAAAGTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
65 GTAAGTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
*
32021438 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGGCTATGTATGTTAA
1 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGGCTATGTA-GTTAT
32021503 GTAAGTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
65 GTAAGTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
32021556 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGGCTATGTA-TTATG
1 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGGCTATGTAGTTATG
32021620 TAAGTTATTATGTTATTATGTAAGTT
66 TAAG-TA--ATG-TATTATGTAAGTT
32021646 ATGCAAGTTT
Statistics
Matches: 195, Mismatches: 5, Indels: 11
0.92 0.02 0.05
Matches are distributed among these distances:
115 47 0.24
116 10 0.05
117 3 0.02
118 119 0.61
119 3 0.02
120 13 0.07
ACGTcount: A:0.31, C:0.02, G:0.20, T:0.47
Consensus pattern (117 bp):
TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGGCTATGTAGTTATG
TAAGTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
Found at i:32021614 original size:34 final size:34
Alignment explanation
Indices: 32021323--32021501 Score: 115
Period size: 34 Copynumber: 4.9 Consensus size: 34
32021313 CACGAGTAAG
* * *
32021323 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTA
1 TTATGTAAGTTATGTAAGCTATGTAAGTTATGTA
* * *
32021357 TTATGTAAGTTATTATTCTGTAAGTTATGAAAGTAATGTA
1 TTATGTAAG---TTA---TGTAAGCTATGTAAGTTATGTA
* * *
32021397 TTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
1 TTATGTAAGTTATG--TAA-GCTA--TGT--AAGTTATGTA
* * *
32021438 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTA
1 TTATGTAAGTTATGTAAGCTATGTAAGTTATGTA
* *
32021472 TTATGTAAGTTATGTAGGCTATGTATGTTA
1 TTATGTAAGTTATGTAAGCTATGTAAGTTA
32021502 AGTAAGTAAT
Statistics
Matches: 115, Mismatches: 17, Indels: 26
0.73 0.11 0.16
Matches are distributed among these distances:
34 45 0.39
36 5 0.04
37 9 0.08
38 4 0.03
39 4 0.03
40 27 0.23
41 21 0.18
ACGTcount: A:0.31, C:0.02, G:0.20, T:0.47
Consensus pattern (34 bp):
TTATGTAAGTTATGTAAGCTATGTAAGTTATGTA
Found at i:32021638 original size:20 final size:19
Alignment explanation
Indices: 32021549--32021647 Score: 73
Period size: 25 Copynumber: 5.1 Consensus size: 19
32021539 GTTATCAAAG
32021549 TTATGTATTATGTAAGTTA
1 TTATGTATTATGTAAGTTA
*
32021568 TT-T-AAGTTATGTAAG---
1 TTATGTA-TTATGTAAGTTA
*
32021583 TTGTGTATTATGTAAGTTA
1 TTATGTATTATGTAAGTTA
32021602 TGTAGGCTATGTATTATGTAAGTTA
1 --T----TATGTATTATGTAAGTTA
32021627 TTATGTTATTATGTAAGTTA
1 TTATG-TATTATGTAAGTTA
32021647 T
1 T
32021648 GCAAGTTTAT
Statistics
Matches: 64, Mismatches: 3, Indels: 25
0.70 0.03 0.27
Matches are distributed among these distances:
15 2 0.03
16 10 0.16
17 2 0.03
18 10 0.16
19 6 0.09
20 15 0.23
21 1 0.02
23 1 0.02
25 17 0.27
ACGTcount: A:0.29, C:0.01, G:0.19, T:0.51
Consensus pattern (19 bp):
TTATGTATTATGTAAGTTA
Found at i:32021827 original size:20 final size:23
Alignment explanation
Indices: 32021785--32021827 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
32021775 ATATGGGGTG
*
32021785 ATATATTAAAAATATAAGTTTTA
1 ATATATTAAAAATATAAGATTTA
32021808 ATAT-TTAAAAATA-AA-ATTTA
1 ATATATTAAAAATATAAGATTTA
32021828 TAATTATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 4 0.21
21 2 0.11
22 9 0.47
23 4 0.21
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (23 bp):
ATATATTAAAAATATAAGATTTA
Found at i:32022037 original size:120 final size:121
Alignment explanation
Indices: 32021701--32022137 Score: 747
Period size: 120 Copynumber: 3.6 Consensus size: 121
32021691 TATGTATCCT
*
32021701 ATTTATAATTATTTTTTAAAATTATAAAATTTATTGACAATAAAATTGACATATAGGTTATATAT
1 ATTTACAATTA-TTTTTAAAATTATAAAATTTATTGACAATAAAATTGACATATAGGTTATATAT
* *
32021766 CCATACCATATATGGGGTGATATATTAAAAATATAAGTTTTAATATTTAAAAATAAA
65 CCATACCATATATGGGGTGATATATTAAAAATATAGGTTTTAATATTTAAAAATAAC
* *
32021823 ATTTATAATTATTTTTAAAATTATAAAATTTATTGACAATAAAACTGACATATAGGTTATATATC
1 ATTTACAATTATTTTTAAAATTATAAAATTTATTGACAATAAAATTGACATATAGGTTATATATC
32021888 CATACCATATATGGGGTGATATATT-AAAATATAGGTTTTAATATTTAAAAATAAC
66 CATACCATATATGGGGTGATATATTAAAAATATAGGTTTTAATATTTAAAAATAAC
32021943 ATTTACAATTATTTTTAAAATTATAAAATTTATTGACAATAAAATTGA-ATATAGGTTATATATC
1 ATTTACAATTATTTTTAAAATTATAAAATTTATTGACAATAAAATTGACATATAGGTTATATATC
* * *
32022007 CATACCATTTATTGGTTGATATATTAAAAATATAGGTTTTAATATTT-AAAATAAC
66 CATACCATATATGGGGTGATATATTAAAAATATAGGTTTTAATATTTAAAAATAAC
* *
32022062 ATTTACAATTA-TTTTAAAATTATAAAATTTATGGACAATAAAATTGAAATATAGGTTATATATC
1 ATTTACAATTATTTTTAAAATTATAAAATTTATTGACAATAAAATTGACATATAGGTTATATATC
32022126 CATACCATATAT
66 CATACCATATAT
32022138 AAATTTTAAT
Statistics
Matches: 303, Mismatches: 10, Indels: 7
0.95 0.03 0.02
Matches are distributed among these distances:
118 35 0.12
119 84 0.28
120 95 0.31
121 78 0.26
122 11 0.04
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.41
Consensus pattern (121 bp):
ATTTACAATTATTTTTAAAATTATAAAATTTATTGACAATAAAATTGACATATAGGTTATATATC
CATACCATATATGGGGTGATATATTAAAAATATAGGTTTTAATATTTAAAAATAAC
Found at i:32022179 original size:18 final size:18
Alignment explanation
Indices: 32022158--32022247 Score: 103
Period size: 18 Copynumber: 4.9 Consensus size: 18
32022148 ATATATATAA
32022158 ATTTAAGTAATGTAATAT
1 ATTTAAGTAATGTAATAT
32022176 ATTTAAGTAATGTAAGTTAT
1 ATTTAAGTAATGTAA--TAT
**
32022196 AAATTTTTGTAA-GTAATAT
1 --ATTTAAGTAATGTAATAT
32022215 ATTTAAGTAATGTAATAT
1 ATTTAAGTAATGTAATAT
*
32022233 ATTTTAGTAA-GTAAT
1 ATTTAAGTAATGTAAT
32022248 GTAAGTAATG
Statistics
Matches: 62, Mismatches: 5, Indels: 11
0.79 0.06 0.14
Matches are distributed among these distances:
17 13 0.21
18 31 0.50
19 3 0.05
20 3 0.05
21 4 0.06
22 8 0.13
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.46
Consensus pattern (18 bp):
ATTTAAGTAATGTAATAT
Found at i:32022278 original size:37 final size:35
Alignment explanation
Indices: 32022197--32022305 Score: 103
Period size: 35 Copynumber: 3.1 Consensus size: 35
32022187 GTAAGTTATA
* * ** * *
32022197 AATTTTTGTAAGTAATATATTTAAGTAATGTA-AT
1 AATTTTAGTAAGTAATGTAAGTAAGTAATATATTT
32022231 ATATTTTAGTAAGTAATGTAAGTAATGTAATATACTTT
1 A-ATTTTAGTAAGTAATGTAAGTAA-GTAATATA-TTT
* **
32022269 AATTTTAGTAAGTCATGTATTTAAGTAATATATTT
1 AATTTTAGTAAGTAATGTAAGTAAGTAATATATTT
32022304 AA
1 AA
32022306 GTAAATTTTA
Statistics
Matches: 62, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
34 1 0.02
35 24 0.39
36 15 0.24
37 20 0.32
38 2 0.03
ACGTcount: A:0.40, C:0.02, G:0.12, T:0.46
Consensus pattern (35 bp):
AATTTTAGTAAGTAATGTAAGTAAGTAATATATTT
Found at i:32022339 original size:13 final size:13
Alignment explanation
Indices: 32022277--32022340 Score: 60
Period size: 13 Copynumber: 4.8 Consensus size: 13
32022267 TTAATTTTAG
*
32022277 TAAGTCATGTATT
1 TAAGTAATGTATT
*
32022290 TAAGTAATATATT
1 TAAGTAATGTATT
32022303 TAAGTAAAT-T-TT
1 TAAGT-AATGTATT
*
32022315 AGTAATTAATGTATT
1 --TAAGTAATGTATT
32022330 TAAGTAATGTA
1 TAAGTAATGTA
32022341 AGTTATAAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
12 2 0.05
13 30 0.71
14 8 0.19
15 2 0.05
ACGTcount: A:0.41, C:0.02, G:0.12, T:0.45
Consensus pattern (13 bp):
TAAGTAATGTATT
Found at i:32022389 original size:21 final size:21
Alignment explanation
Indices: 32022365--32022404 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
32022355 AAAATATATA
* *
32022365 TATTAATAATTCATTGACATT
1 TATTAACAATTCACTGACATT
*
32022386 TATTCACAATTCACTGACA
1 TATTAACAATTCACTGACA
32022405 GTCAATCAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.17, G:0.05, T:0.40
Consensus pattern (21 bp):
TATTAACAATTCACTGACATT
Found at i:32024769 original size:83 final size:83
Alignment explanation
Indices: 32024585--32024785 Score: 201
Period size: 83 Copynumber: 2.4 Consensus size: 83
32024575 ATATATTTGT
* ** * * *
32024585 GGCGTTTTTAGCAAAAATGCCACTAAAAATTACCTTACTGAATAGAAACGGTGCCGTTTTAAGAA
1 GGCGTTTTTAGCAAAAACGCCACTAAAAATTACAGTACTGAAGAGAAACAGTGACGTTTTAAGAA
* *
32024650 ACTTTAATCCATAGTTCC
66 ACATTAATACATAGTTCC
** * * *
32024668 GGCG-TTTTCCCAAAAAACGCCACT-AAAATTTCAAGTCCTGAAGAGAAATAGTGACGTTTTGAA
1 GGCGTTTTTAGC-AAAAACGCCACTAAAAATTAC-AGTACTGAAGAGAAACAGTGACGTTTT-AA
*
32024731 -AAACATTAATACATAGTTGC
63 GAAACATTAATACATAGTTCC
* *
32024751 GGCGTTTTTAGCATAAACGCCACTAATAGATTACA
1 GGCGTTTTTAGCAAAAACGCCACTAA-AAATTACA
32024786 CTCCTCTTCT
Statistics
Matches: 93, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
82 12 0.13
83 67 0.72
84 9 0.10
85 5 0.05
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.28
Consensus pattern (83 bp):
GGCGTTTTTAGCAAAAACGCCACTAAAAATTACAGTACTGAAGAGAAACAGTGACGTTTTAAGAA
ACATTAATACATAGTTCC
Found at i:32025365 original size:449 final size:450
Alignment explanation
Indices: 32024525--32025419 Score: 1461
Period size: 449 Copynumber: 2.0 Consensus size: 450
32024515 ATTGCTTCCA
*
32024525 TAATTGCCAAAATTAAATTATGAAACAGCACCGTTTTAAGAACCTTAAATATATATTTGTGGCGT
1 TAATTGCCAAAATTAAATTATGAAACAGCACCGTTTTAAGAACCTTAAATATATAGTTGTGGCGT
* * *
32024590 TTTTAGCAAAAATGCCACTAAAAATTACCTTACTGAATAGAAACGGTGCCGTTTTAAGAAACTTT
66 TTTTA-CAAAAACGCCACTAAAAATTAACTTACTGAAAAGAAACGGTGCCGTTTTAAGAAACTTT
* *
32024655 AATCCATAGTTCCGGCGTTTTCCCAAAAAACGCCACTAAAATTTCAAGTCCTGAAGAGAAATAGT
130 AATCCATAGTTCCGGCGTTTTCCCAAAAAACGCCACTAAAATGTCAAGTCCTGAAGAGAAACAGT
* *
32024720 GACGTTTTGAAAAACATTAATACATAGTTGCGGCGTTTTTAGCATAAACGCCACTAATAGATTAC
195 GACGTTTTGAAAAACATTAATACATACTTGCGGCGTTTCTAGCATAAACGCCACTAATAGATTAC
* * *
32024785 ACTCCTCTTCTGAAACGGTGCCGTTTTGAGAAATTATAATACATATTTATGGCGTTTTCCCAAAA
260 ACTACTCTTCTGAAACGGGGCCGTTTTGAGAAATTATAATACATATTTATGGCATTTTCCCAAAA
* * * **
32024850 AATGCCACAAATTAAATTAAATTTCTAAATGGGTACAACGCCGTTTTGAAAAAAATGGGTACATA
325 AACGCCACAAATTAAATTAAATTTCTAAATGGATACAACGCCATTTCCAAAAAAATGGGTACATA
32024915 GTTGCGGCGTTTCTACCCAAACGCCGCTAATGTTTTTT-TTCCCTTATAATGTGGTCCTGCG
390 GTTGCGGCGTTTCTACCCAAACGCCGCTAATGTTTTTTATT-CCTTATAATGTGGTCCTGCG
* * *
32024976 TAATTGCCAAAATTAAATTCTGAAACAGTACCGTTTTAAGAACCTTCAATATATAGTTGTGGCGT
1 TAATTGCCAAAATTAAATTATGAAACAGCACCGTTTTAAGAACCTTAAATATATAGTTGTGGCGT
32025041 TTTTA-AAAAACGCCACTAAAAATTAACTTACTGAAAAGAAACGGTGCCGTTTTAAGAAACTTTA
66 TTTTACAAAAACGCCACTAAAAATTAACTTACTGAAAAGAAACGGTGCCGTTTTAAGAAACTTTA
* * * ** *
32025105 ATTCATATTTCTGGCGTTTTCCGGAAAAACGCCACTAAAATGTCAAGTCCTGAAGTGAAACAGTG
131 ATCCATAGTTCCGGCGTTTTCCCAAAAAACGCCACTAAAATGTCAAGTCCTGAAGAGAAACAGTG
* *
32025170 ACGTTTTGAAAAACATTAATACATCCTTGCGGCGTTTCTAGCATAAACGCCACTAGTAGATTACA
196 ACGTTTTGAAAAACATTAATACATACTTGCGGCGTTTCTAGCATAAACGCCACTAATAGATTACA
* * *
32025235 CTACTCTTCTGAAACGGGGCCGTTTTGATAAATTATAATACATATTTGTGGCATTTTCCCATAAA
261 CTACTCTTCTGAAACGGGGCCGTTTTGAGAAATTATAATACATATTTATGGCATTTTCCCAAAAA
* *
32025300 ACGCCACAAATTAAATTAAATTTCTAAATGGATACGATGCCATTTCCAAAAAAATGGGTACATAG
326 ACGCCACAAATTAAATTAAATTTCTAAATGGATACAACGCCATTTCCAAAAAAATGGGTACATAG
*
32025365 TTGCGGCGTTTCTACCCAAACGCCGCTAATGTTTTTTATTTCTTATAATGTGGTC
391 TTGCGGCGTTTCTACCCAAACGCCGCTAATGTTTTTTATTCCTTATAATGTGGTC
32025420 TTATATATCA
Statistics
Matches: 410, Mismatches: 33, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
449 342 0.83
450 2 0.00
451 66 0.16
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.32
Consensus pattern (450 bp):
TAATTGCCAAAATTAAATTATGAAACAGCACCGTTTTAAGAACCTTAAATATATAGTTGTGGCGT
TTTTACAAAAACGCCACTAAAAATTAACTTACTGAAAAGAAACGGTGCCGTTTTAAGAAACTTTA
ATCCATAGTTCCGGCGTTTTCCCAAAAAACGCCACTAAAATGTCAAGTCCTGAAGAGAAACAGTG
ACGTTTTGAAAAACATTAATACATACTTGCGGCGTTTCTAGCATAAACGCCACTAATAGATTACA
CTACTCTTCTGAAACGGGGCCGTTTTGAGAAATTATAATACATATTTATGGCATTTTCCCAAAAA
ACGCCACAAATTAAATTAAATTTCTAAATGGATACAACGCCATTTCCAAAAAAATGGGTACATAG
TTGCGGCGTTTCTACCCAAACGCCGCTAATGTTTTTTATTCCTTATAATGTGGTCCTGCG
Found at i:32025756 original size:7 final size:7
Alignment explanation
Indices: 32025733--32025770 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
32025723 ATATAATTCT
32025733 TAACCCC
1 TAACCCC
**
32025740 TAACGTC
1 TAACCCC
32025747 TAACCCC
1 TAACCCC
32025754 TAACCCC
1 TAACCCC
32025761 TAACCCC
1 TAACCCC
32025768 TAA
1 TAA
32025771 ACCTTGAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.32, C:0.47, G:0.03, T:0.18
Consensus pattern (7 bp):
TAACCCC
Found at i:32026767 original size:41 final size:41
Alignment explanation
Indices: 32026695--32026892 Score: 258
Period size: 41 Copynumber: 4.8 Consensus size: 41
32026685 TAAAATGTCC
*
32026695 TTAGCGGCGCTTTTCCAGAAAACGCCGCTAAAGGCCAAAGCA
1 TTAGCGGCGCTTTTACA-AAAACGCCGCTAAAGGCCAAAGCA
* *
32026737 TTAGCGACGCTTTTACAAAAACACCGCTAAAGGCCAAAGCA
1 TTAGCGGCGCTTTTACAAAAACGCCGCTAAAGGCCAAAGCA
* * *
32026778 TTAGCGGCGCTTTTACAAAAACGCCGCTAAAGCCCATAGAA
1 TTAGCGGCGCTTTTACAAAAACGCCGCTAAAGGCCAAAGCA
*
32026819 TTAGCGGCGCTTATT-CAAAAACGCCGCTAAA-GCCTACAGCA
1 TTAGCGGCGCTT-TTACAAAAACGCCGCTAAAGGCC-AAAGCA
*
32026860 TTAGCGGCGCTTCTTA-ATAAAACGCCACTAAAG
1 TTAGCGGCGCTT-TTACA-AAAACGCCGCTAAAG
32026893 ACCCGAAAGG
Statistics
Matches: 138, Mismatches: 13, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
40 2 0.01
41 106 0.77
42 30 0.22
ACGTcount: A:0.34, C:0.27, G:0.20, T:0.19
Consensus pattern (41 bp):
TTAGCGGCGCTTTTACAAAAACGCCGCTAAAGGCCAAAGCA
Found at i:32026974 original size:40 final size:39
Alignment explanation
Indices: 32026930--32027083 Score: 166
Period size: 40 Copynumber: 3.8 Consensus size: 39
32026920 TGGGCTTTGG
* ** * *
32026930 TTTTTTGCGGCGTTTTTTTTAAAACCGCCGCTAATGGTTC
1 TTTTTAGCGGCGTTTTTAATAAAA-CGCCGCTAATGCTCC
32026970 TTTTTAGCGGCGTTTTTAATAAAACGCCGCTAATGCTCC
1 TTTTTAGCGGCGTTTTTAATAAAACGCCGCTAATGCTCC
* *
32027009 TATTTTAGCGGCGTTTTTAATAAAACGCCGCGAATGCTCGA
1 T-TTTTAGCGGCGTTTTTAATAAAACGCCGCTAATGCTC-C
* * *
32027050 TTTTT-GCCGGCATTTTTTATGAAAACGCCACTAA
1 TTTTTAG-CGGCGTTTTTAAT-AAAACGCCGCTAA
32027084 AAGTGCCGCT
Statistics
Matches: 99, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
39 15 0.15
40 72 0.73
41 12 0.12
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.38
Consensus pattern (39 bp):
TTTTTAGCGGCGTTTTTAATAAAACGCCGCTAATGCTCC
Found at i:32028020 original size:42 final size:42
Alignment explanation
Indices: 32027962--32028157 Score: 196
Period size: 42 Copynumber: 4.7 Consensus size: 42
32027952 GTTTACAAAC
* *
32027962 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAATA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAATA
* *
32028004 AAAAACGCCGCTAAAGACCATGTTCTTTAGTGGCGCTTAATA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAATA
* * * ** *
32028046 AAAAATGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTCTT
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAATA
** * * **
32028088 CTAAGCGCCTCTAAAGAACATGTTCTTTAGCGGCG-TTTTTA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAATA
** * *
32028129 TCTAAGCACCGCTAAAGAACATGTTCTTT
1 -AAAAACGCCGCTAAAGAACATGTTCTTT
32028158 CGCTACGTTT
Statistics
Matches: 133, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
41 4 0.03
42 129 0.97
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAATA
Found at i:32028119 original size:126 final size:126
Alignment explanation
Indices: 32027973--32028250 Score: 308
Period size: 126 Copynumber: 2.2 Consensus size: 126
32027963 AAAACGCCGT
* * *
32027973 TAAAGACCATGTTCTTTAGCGGCGCTTAATA-AAAAACGCCGCTAAAGACCATGTTCTTTAG-TG
1 TAAAGAACATGTTCTTTAGCGGCG-TTAATATAAAAACACCGCTAAAGAACATGTTCTTTAGCT-
* * * *
32028036 GCGCTTAATAAAAAATGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTCTTCTAAGCGCCTC
64 ACGCTTAATAAAAAACGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTCTTCTAAGCACCAC
** ** * *
32028099 TAAAGAACATGTTCTTTAGCGGCGTTTTTATCTAAGCACCGCTAAAGAACATGTTCTTTCGCTAC
1 TAAAGAACATGTTCTTTAGCGGCGTTAATATAAAAACACCGCTAAAGAACATGTTCTTTAGCTAC
* ** ** * ** *
32028164 GTTTTTTATTAAGCGTTGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAGCACCAC
66 GCTTAATAAAAAACGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTCTTCTAAGCACCAC
**
32028225 TAAAGAACATGGCCTTTAGCGGCGTT
1 TAAAGAACATGTTCTTTAGCGGCGTT
32028251 TTTTCTTAAG
Statistics
Matches: 126, Mismatches: 24, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
125 4 0.03
126 121 0.96
127 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (126 bp):
TAAAGAACATGTTCTTTAGCGGCGTTAATATAAAAACACCGCTAAAGAACATGTTCTTTAGCTAC
GCTTAATAAAAAACGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTCTTCTAAGCACCAC
Found at i:32028339 original size:42 final size:42
Alignment explanation
Indices: 32028052--32028339 Score: 391
Period size: 42 Copynumber: 6.9 Consensus size: 42
32028042 AATAAAAAAT
*
32028052 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTCTTCTAAGC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAGC
* * *
32028094 GCCTCTAAAGAACATGTTCTTTAGCGGCGTTTTTATCTAAGC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAGC
* * * **
32028136 ACCGCTAAAGAACATGTTCTTTCGCTACGTTTTTTAT-TAAGC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTT-TCTAAGC
**
32028178 GTTGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAGC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAGC
* * *
32028220 ACCACTAAAGAACATGGCCTTTAGCGGCG-TTTTTTCTTAAGC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTC-TAAGC
*
32028262 GCCACTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAGC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAGC
* *
32028304 GCCGCTAAAGAACATGTTCTTTAGCAGCGTTTTTTT
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTT
32028340 ACAAAAAATG
Statistics
Matches: 215, Mismatches: 27, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
41 8 0.04
42 199 0.93
43 8 0.04
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (42 bp):
GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAGC
Found at i:32030567 original size:9 final size:9
Alignment explanation
Indices: 32030553--32030586 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
32030543 TTATGTATTA
32030553 TGTAAGTAC
1 TGTAAGTAC
32030562 TGTAAGTAC
1 TGTAAGTAC
32030571 TGTAAGTTA-
1 TGTAAG-TAC
32030580 TGTAAGT
1 TGTAAGT
32030587 TACTTAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 1 0.04
9 21 0.88
10 2 0.08
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (9 bp):
TGTAAGTAC
Found at i:32030582 original size:27 final size:27
Alignment explanation
Indices: 32030534--32031093 Score: 549
Period size: 27 Copynumber: 20.9 Consensus size: 27
32030524 TTAAAACGCC
32030534 AGTTATGT-A-TTATGT-A-TTATGTA
1 AGTTATGTAAGTTATGTAAGTTATGTA
32030557 AG-TACTGTAAG-TACTGTAAGTTATGTA
1 AGTTA-TGTAAGTTA-TGTAAGTTATGTA
*
32030584 AGTTACT-TAATTTATGTAAGTTATGTA
1 AGTTA-TGTAAGTTATGTAAGTTATGTA
* * * *
32030611 AGATATTTAATTTTTGTAAGTTATGTA
1 AGTTATGTAAGTTATGTAAGTTATGTA
*
32030638 AGTTACT-TAATTTATGTAAGTTATGTA
1 AGTTA-TGTAAGTTATGTAAGTTATGTA
* * *
32030665 AGTTATGTAAATTATTTAATTTATGTA
1 AGTTATGTAAGTTATGTAAGTTATGTA
* *
32030692 AGTTATGTAAGATAT-TTAGTTTATGTA
1 AGTTATGTAAGTTATGTAAG-TTATGTA
* *
32030719 ATTTATGTAAGTTATGTAAGTTATTTA
1 AGTTATGTAAGTTATGTAAGTTATGTA
* * *
32030746 ATTTTTGTAAGTTATGTAAGTTACGTA
1 AGTTATGTAAGTTATGTAAGTTATGTA
*
32030773 AGTTACT-TAATTTATGTAAGTTATGTA
1 AGTTA-TGTAAGTTATGTAAGTTATGTA
* *
32030800 AGTTATGTAAGTTATTTAATTTATGTA
1 AGTTATGTAAGTTATGTAAGTTATGTA
* *
32030827 AGTTATGTAAGATAT-TTAGTTTATGTA
1 AGTTATGTAAGTTATGTAAG-TTATGTA
* *
32030854 ATTTATGTAAGTTATGTAAGTTATTTA
1 AGTTATGTAAGTTATGTAAGTTATGTA
* *
32030881 ATTTTTGTAAGTTATGTAAGTTACT-TA
1 AGTTATGTAAGTTATGTAAGTTA-TGTA
* * *
32030908 ATTTATATAAGTTATGTAAGTTATTTA
1 AGTTATGTAAGTTATGTAAGTTATGTA
* *
32030935 AGTTATTTAATTTATGTAAGTTATGTA
1 AGTTATGTAAGTTATGTAAGTTATGTA
* * *
32030962 AGATAT-TTAGTTTATGTAATTTATGTA
1 AGTTATGTAAG-TTATGTAAGTTATGTA
* * *
32030989 AGTTATGTAAGTTATTTAATTTTTGTA
1 AGTTATGTAAGTTATGTAAGTTATGTA
* *
32031016 AGTTATGTAAGTTACT-TAATTTTTGTA
1 AGTTATGTAAGTTA-TGTAAGTTATGTA
*
32031043 AGTTATGTAAGTTACT-TAATTTATGTA
1 AGTTATGTAAGTTA-TGTAAGTTATGTA
32031070 AGTTATGTAA-TTAATGTAAGTTAT
1 AGTTATGTAAGTT-ATGTAAGTTAT
32031094 TTAATTTGTG
Statistics
Matches: 463, Mismatches: 50, Indels: 44
0.83 0.09 0.08
Matches are distributed among these distances:
22 2 0.00
23 5 0.01
24 3 0.01
25 3 0.01
26 14 0.03
27 417 0.90
28 19 0.04
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.50
Consensus pattern (27 bp):
AGTTATGTAAGTTATGTAAGTTATGTA
Found at i:32030604 original size:36 final size:36
Alignment explanation
Indices: 32030534--32031100 Score: 489
Period size: 36 Copynumber: 15.9 Consensus size: 36
32030524 TTAAAACGCC
*
32030534 AGTTATGT-A-TTATGT-A-TTATGTAA-GTACTGTA
1 AGTTATGTAAGTTATGTAAGTTATGTAATTTA-TGTA
32030566 AG-TACTGTAAGTTATGTAAGTTACT-TAATTTATGTA
1 AGTTA-TGTAAGTTATGTAAGTTA-TGTAATTTATGTA
* * * * *
32030602 AGTTATGTAAGATATTTAATTTTTGTAAGTTATGTA
1 AGTTATGTAAGTTATGTAAGTTATGTAATTTATGTA
* *
32030638 AGTTACT-TAATTTATGTAAGTTATGTAAGTTATGTA
1 AGTTA-TGTAAGTTATGTAAGTTATGTAATTTATGTA
* * * ** *
32030674 AATTATTTAATTTATGTAAGTTATGTAAGATAT-TT
1 AGTTATGTAAGTTATGTAAGTTATGTAATTTATGTA
* * *
32030709 AGTTTATGTAATTTATGTAAGTTATGTAAGTTATTTA
1 AG-TTATGTAAGTTATGTAAGTTATGTAATTTATGTA
* * * *
32030746 ATTTTTGTAAGTTATGTAAGTTACGTAAGTTACT-TA
1 AGTTATGTAAGTTATGTAAGTTATGTAATTTA-TGTA
* * *
32030782 ATTTATGTAAGTTATGTAAGTTATGTAAGTTATTTA
1 AGTTATGTAAGTTATGTAAGTTATGTAATTTATGTA
* * * *
32030818 ATTTATGTAAGTTATGTAAGATATTTAGTTTATGTA
1 AGTTATGTAAGTTATGTAAGTTATGTAATTTATGTA
* * *
32030854 ATTTATGTAAGTTATGTAAGTTATTTAATTTTTGTA
1 AGTTATGTAAGTTATGTAAGTTATGTAATTTATGTA
* * *
32030890 AGTTATGTAAGTTACT-TAATTTATATAAGTTATGTA
1 AGTTATGTAAGTTA-TGTAAGTTATGTAATTTATGTA
* * * *
32030926 AGTTATTTAAGTTATTTAATTTATGTAAGTTATGTA
1 AGTTATGTAAGTTATGTAAGTTATGTAATTTATGTA
* * * *
32030962 AGATAT-TTAGTTTATGTAATTTATGTAAGTTATGTA
1 AGTTATGTAAG-TTATGTAAGTTATGTAATTTATGTA
* * * *
32030998 AGTTATTTAATTTTTGTAAGTTATGTAAGTTACT-TA
1 AGTTATGTAAGTTATGTAAGTTATGTAATTTA-TGTA
* *
32031034 ATTTTTGTAAGTTATGTAAGTTACT-TAATTTATGTA
1 AGTTATGTAAGTTATGTAAGTTA-TGTAATTTATGTA
*
32031070 AGTTATGTAA-TTAATGTAAGTTATTTAATTT
1 AGTTATGTAAGTT-ATGTAAGTTATGTAATTT
32031101 GTGAACCCTA
Statistics
Matches: 456, Mismatches: 55, Indels: 44
0.82 0.10 0.08
Matches are distributed among these distances:
31 2 0.00
32 5 0.01
33 1 0.00
34 6 0.01
35 14 0.03
36 414 0.91
37 14 0.03
ACGTcount: A:0.33, C:0.02, G:0.15, T:0.50
Consensus pattern (36 bp):
AGTTATGTAAGTTATGTAAGTTATGTAATTTATGTA
Found at i:32030638 original size:63 final size:64
Alignment explanation
Indices: 32030562--32031100 Score: 638
Period size: 63 Copynumber: 8.5 Consensus size: 64
32030552 ATGTAAGTAC
* *
32030562 TGTAAG-TACTGTAAGTTATGTAAGTTACTTAATTTATGTAAGTTATGTAAGATATTTAA-TTTT
1 TGTAAGTTA-TGTAAGTTATGTAAGTTACTTAATTTATGTAAGTTATGTAAGTTATTTAAGTTAT
* * * *
32030625 TGTAAGTTATGTAAGTTACT-TAATTTA-TGTAAGTTATGTAAGTTATGTAAATTATTTAATTTA
1 TGTAAGTTATGTAAGTTA-TGTAAGTTACT-TAATTTATGTAAGTTATGTAAGTTATTTAAGTTA
32030688 -
64 T
* * *
32030688 TGTAAGTTATGTAAGATAT-TTAGTTTA-TGTAATTTATGTAAGTTATGTAAGTTATTTAA-TTT
1 TGTAAGTTATGTAAGTTATGTAAG-TTACT-TAATTTATGTAAGTTATGTAAGTTATTTAAGTTA
32030750 T
64 T
* *
32030751 TGTAAGTTATGTAAGTTACGTAAGTTACTTAATTTATGTAAGTTATGTAAGTTATGTAAGTTAT
1 TGTAAGTTATGTAAGTTATGTAAGTTACTTAATTTATGTAAGTTATGTAAGTTATTTAAGTTAT
* * * * * *
32030815 T-TAATTTATGTAAGTTATGTAAGATATTTAGTTTATGTAATTTATGTAAGTTATGTAAGTTAT
1 TGTAAGTTATGTAAGTTATGTAAGTTACTTAATTTATGTAAGTTATGTAAGTTATTTAAGTTAT
* * *
32030878 T-TAATTTTTGTAAGTTATGTAAGTTACTTAATTTATATAAGTTATGTAAGTTATTTAAGTTAT
1 TGTAAGTTATGTAAGTTATGTAAGTTACTTAATTTATGTAAGTTATGTAAGTTATTTAAGTTAT
* * * * * *
32030941 T-TAATTTATGTAAGTTATGTAAGATATTTAGTTTATGTAATTTATGTAAGTTATGTAAGTTAT
1 TGTAAGTTATGTAAGTTATGTAAGTTACTTAATTTATGTAAGTTATGTAAGTTATTTAAGTTAT
* * * * *
32031004 T-TAATTTTTGTAAGTTATGTAAGTTACTTAATTTTTGTAAGTTATGTAAGTTACTTAATTTA-
1 TGTAAGTTATGTAAGTTATGTAAGTTACTTAATTTATGTAAGTTATGTAAGTTATTTAAGTTAT
*
32031066 TGTAAGTTATGTAA-TTAATGTAAGTTATTTAATTT
1 TGTAAGTTATGTAAGTT-ATGTAAGTTACTTAATTT
32031101 GTGAACCCTA
Statistics
Matches: 417, Mismatches: 48, Indels: 22
0.86 0.10 0.05
Matches are distributed among these distances:
62 9 0.02
63 395 0.95
64 13 0.03
ACGTcount: A:0.33, C:0.01, G:0.15, T:0.50
Consensus pattern (64 bp):
TGTAAGTTATGTAAGTTATGTAAGTTACTTAATTTATGTAAGTTATGTAAGTTATTTAAGTTAT
Found at i:32034574 original size:14 final size:15
Alignment explanation
Indices: 32034543--32034577 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
32034533 TTTGACCCCA
*
32034543 AAATCCCTAAACCTT
1 AAATCCCTAAACCCT
32034558 AAATCCC-AAACCCT
1 AAATCCCTAAACCCT
32034572 AAATCC
1 AAATCC
32034578 ATACAAGTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.43, C:0.37, G:0.00, T:0.20
Consensus pattern (15 bp):
AAATCCCTAAACCCT
Found at i:32035701 original size:115 final size:114
Alignment explanation
Indices: 32035490--32036025 Score: 372
Period size: 115 Copynumber: 4.7 Consensus size: 114
32035480 ATGCATGGTT
* * * * * * *
32035490 AAGACCAAAACTTTACGTTTTGGTTAAGATATTTTCCGGCGCTTCTCAAAAAGTGCCACTAATAC
1 AAGACAAAAACTCTGCGTTTTGGTTAACATATTTTGCGGCGCTTCTCAAAAAGCGCCGCTAATAC
* * * **
32035555 TATACTTTAGTGGCGATTTCTCGTGGA-CGCCACTAATTCCATTATACATC
66 TATGCTTTAGCGGCG--TTCCCGTTAAGCGCCACTAATTCCATTATACATC
** * * * * *
32035605 AAGACTTAAACACTGCGTTTTTGTTAATATATTTTGCGGCGCTTCTCAAAAAGCACCGCTAATAA
1 AAGACAAAAACTCTGCGTTTTGGTTAACATATTTTGCGGCGCTTCTCAAAAAGCGCCGCTAATAC
* * * *
32035670 TATGCTTTAGCGGCGTTCCCGTATAAGCGCCACTAAGTCTAATATACCTC
66 TATGCTTTAGCGGCGTTCCCGT-TAAGCGCCACTAATTCCATTATACATC
* * * * ****
32035720 ATGA-AAAAACTCTGCGTTTTGGTGAGCATATTTTGCGGCGCTTTTTGCCAAGCGCCGCTAATAC
1 AAGACAAAAACTCTGCGTTTTGGTTAACATATTTTGCGGCGCTTCTCAAAAAGCGCCGCTAATAC
* * * * *** **
32035784 TATGATGTAGCAGTGTT-TTTTTAATATGCGCCACTAATAAC-TATATACATC
66 TATGCTTTAGCGGCGTTCCCGTT-A-A-GCGCCACTAATTCCAT-TATACATC
* * * * * * **
32035835 GAGACAAAAACGT-TGCGTTTTGGTTACCAAATTTTGTGGTGCTTATCTGAAA-CGCCGCTAATA
1 AAGACAAAAAC-TCTGCGTTTTGGTTAACATATTTTGCGGCGCTTCTCAAAAAGCGCCGCTAATA
* * * * * *
32035898 GTATGCCTTAGCGGCGTGTTCCC-TT-TGCGCCACTAATTCTAGTATACCTC
65 CTATGCTTTAGCGGC--GTTCCCGTTAAGCGCCACTAATTCCATTATACATC
* * * *
32035948 AAGAC-CAAACTCTACGTTTTGGTTCAGATATTTTGCGGCGCTTCTCACAAAA-CGCCGCTAATA
1 AAGACAAAAACTCTGCGTTTTGGTTAACATATTTTGCGGCGCTTCTCA-AAAAGCGCCGCTAATA
*
32036011 TTATGCTTTAGCGGC
65 CTATGCTTTAGCGGC
32036026 TTTTTCCATT
Statistics
Matches: 318, Mismatches: 89, Indels: 30
0.73 0.20 0.07
Matches are distributed among these distances:
111 1 0.00
112 31 0.10
113 57 0.18
114 61 0.19
115 127 0.40
116 35 0.11
117 6 0.02
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (114 bp):
AAGACAAAAACTCTGCGTTTTGGTTAACATATTTTGCGGCGCTTCTCAAAAAGCGCCGCTAATAC
TATGCTTTAGCGGCGTTCCCGTTAAGCGCCACTAATTCCATTATACATC
Found at i:32041249 original size:61 final size:58
Alignment explanation
Indices: 32041184--32041296 Score: 163
Period size: 61 Copynumber: 1.9 Consensus size: 58
32041174 GATTACCATA
* * *
32041184 ATATTAAATTTAATTTAATGTTTATCTTATAGATAAATATTCTATTAATTTAATAAGATTT
1 ATATTAAATTTAATCTAATATTTATC-T-T-GATAAATATTATATTAATTTAATAAGATTT
*
32041245 ATATTAAATTTAATCTAATATTTATCTTGATAAGTATTATATTAATTTAATA
1 ATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATA
32041297 TTAAAGTGAT
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
58 22 0.46
59 1 0.02
60 1 0.02
61 24 0.50
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50
Consensus pattern (58 bp):
ATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATAAGATTT
Found at i:32046112 original size:39 final size:37
Alignment explanation
Indices: 32046047--32046137 Score: 85
Period size: 39 Copynumber: 2.4 Consensus size: 37
32046037 CAGAATGGCA
* *
32046047 CCCAGTGCCTCATCGGATAGTTCGAAGCAATAGTTGACG
1 CCCAGTGCCTCATCGGAAAGTCCGAAG-AA-AGTTGACG
* ***
32046086 CCCAGTGTCTCATCGGCAAAG-CCGAAGAAAGTTGGTA
1 CCCAGTGCCTCATCGG-AAAGTCCGAAGAAAGTTGACG
*
32046123 CCCAGTACCTCATCG
1 CCCAGTGCCTCATCG
32046138 AATCTATCCG
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
37 18 0.42
38 2 0.05
39 20 0.47
40 3 0.07
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (37 bp):
CCCAGTGCCTCATCGGAAAGTCCGAAGAAAGTTGACG
Found at i:32046349 original size:23 final size:24
Alignment explanation
Indices: 32046305--32046350 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
32046295 TTTCTCACAT
* **
32046305 TTTCAATTCAATCATTTTTCCACC
1 TTTCAATTCAATAATTAATCCACC
32046329 TTTCAA-TCAATAATTAATCCAC
1 TTTCAATTCAATAATTAATCCAC
32046351 AATTCACACA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.33, C:0.26, G:0.00, T:0.41
Consensus pattern (24 bp):
TTTCAATTCAATAATTAATCCACC
Found at i:32046503 original size:3 final size:3
Alignment explanation
Indices: 32046495--32046541 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
32046485 CCACTCATCT
32046495 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
32046542 CTTACCTCAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:32047192 original size:20 final size:20
Alignment explanation
Indices: 32047169--32047206 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
32047159 TAAAAATCTA
*
32047169 TTTTTCCCTT-TTTCTTTCT
1 TTTTTTCCTTCTTTCTTTCT
*
32047188 TTTTTTTCTTCTTTCTTTC
1 TTTTTTCCTTCTTTCTTTC
32047207 CCCTGTTTCG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (20 bp):
TTTTTTCCTTCTTTCTTTCT
Found at i:32047274 original size:16 final size:15
Alignment explanation
Indices: 32047229--32047280 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
32047219 TGCTTCTCTG
32047229 TTTCTTTGTTCTTTCT
1 TTTCTTTGTT-TTTCT
* *
32047245 ATTCTTTTTATTTTCT
1 TTTCTTTGT-TTTTCT
*
32047261 TTTGCTTTGTTTTTTT
1 TTT-CTTTGTTTTTCT
32047277 TTTC
1 TTTC
32047281 CTTTTATGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
15 1 0.03
16 22 0.76
17 6 0.21
ACGTcount: A:0.04, C:0.13, G:0.06, T:0.77
Consensus pattern (15 bp):
TTTCTTTGTTTTTCT
Found at i:32047786 original size:17 final size:17
Alignment explanation
Indices: 32047743--32047789 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
32047733 TAAAACCATA
32047743 ATAATATTTA-ATAATT
1 ATAATATTTATATAATT
* *
32047759 ATACTAATTATATACA-T
1 ATAATATTTATATA-ATT
32047776 ATAATATTTATATA
1 ATAATATTTATATA
32047790 TAACCTAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
16 8 0.32
17 16 0.64
18 1 0.04
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (17 bp):
ATAATATTTATATAATT
Found at i:32049259 original size:37 final size:37
Alignment explanation
Indices: 32049209--32049283 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
32049199 AATGGAAGTG
32049209 TGTGATGATTTTGATCTTCCTTGCTAGGTTTGTAAAC
1 TGTGATGATTTTGATCTTCCTTGCTAGGTTTGTAAAC
32049246 TGTGATGATTTTGATCTTCCTTGCTAGGTTTGTAAAC
1 TGTGATGATTTTGATCTTCCTTGCTAGGTTTGTAAAC
32049283 T
1 T
32049284 TAGACATGTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.19, C:0.13, G:0.21, T:0.47
Consensus pattern (37 bp):
TGTGATGATTTTGATCTTCCTTGCTAGGTTTGTAAAC
Found at i:32052953 original size:7 final size:7
Alignment explanation
Indices: 32052941--32052968 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
32052931 GCCAAGCATA
32052941 GTTCAAT
1 GTTCAAT
32052948 GTTCAAT
1 GTTCAAT
32052955 GTTCAAT
1 GTTCAAT
32052962 GTTCAAT
1 GTTCAAT
32052969 TTATAGATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (7 bp):
GTTCAAT
Found at i:32056002 original size:113 final size:114
Alignment explanation
Indices: 32055753--32056024 Score: 286
Period size: 113 Copynumber: 2.4 Consensus size: 114
32055743 GTTTTATTTA
* * ** * * *
32055753 TTTATTCC-CAGGCAAATTCAAATTAATTCCCTCCTCATCTATTAGGAAACCGAAACTACTTTTA
1 TTTATTCCTAAGGCAACTTCAAATTAATTAGCTCCTCATCT-CTAGGAAACCAAAACTACTTTGA
* *
32055817 ATATTTTGATCAAATAAAAAAAAAAACAATTTTTTCAGTTATTTTTTTCCG
65 ATATTTT-ATCAAATAAAAAAAAAAACAATTTTTTCACTTATTTTTTCCCG
* * *
32055868 TTTATTCCTAATGCAACTTCAAATTAATTGGCTCCTCATCTCT-GGGAACCAAAACTACTTTGAA
1 TTTATTCCTAAGGCAACTTCAAATTAATTAGCTCCTCATCTCTAGGAAACCAAAACTACTTTGAA
* * *
32055932 T-TTTT-T-AATTACAGAAAAAGAAACCATTTTTTCAACTT-TTTTTTCCCTG
66 TATTTTATCAAATA-A-AAAAAAAAACAATTTTTTC-ACTTATTTTTTCCC-G
* * *
32055981 TTTGTTTCTAAGGCAACTTCAAATTAATTAGCTTCTCATCTCTA
1 TTTATTCCTAAGGCAACTTCAAATTAATTAGCTCCTCATCTCTA
32056025 ACTACTTCTA
Statistics
Matches: 132, Mismatches: 19, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
110 4 0.03
111 2 0.02
112 25 0.19
113 46 0.35
114 19 0.14
115 9 0.07
116 27 0.20
ACGTcount: A:0.33, C:0.19, G:0.08, T:0.40
Consensus pattern (114 bp):
TTTATTCCTAAGGCAACTTCAAATTAATTAGCTCCTCATCTCTAGGAAACCAAAACTACTTTGAA
TATTTTATCAAATAAAAAAAAAAACAATTTTTTCACTTATTTTTTCCCG
Found at i:32057957 original size:31 final size:32
Alignment explanation
Indices: 32057884--32057960 Score: 84
Period size: 36 Copynumber: 2.3 Consensus size: 32
32057874 AGTGCATTAG
* *
32057884 TCAGAATAGATCTGAAAGACTGCTGAACTGAA
1 TCAGAATAGATCCGAAAGACTACTGAACTGAA
*
32057916 TCAGCCAGAATAGATCCGAAAGGCTACTGAACTGAA
1 T----CAGAATAGATCCGAAAGACTACTGAACTGAA
32057952 T-AGAATAGA
1 TCAGAATAGA
32057961 GTTTGCTATT
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
31 8 0.21
32 1 0.03
36 29 0.76
ACGTcount: A:0.42, C:0.17, G:0.22, T:0.19
Consensus pattern (32 bp):
TCAGAATAGATCCGAAAGACTACTGAACTGAA
Found at i:32066929 original size:26 final size:26
Alignment explanation
Indices: 32066874--32066929 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
32066864 TACATCGTTC
** *
32066874 CTCACACGAGTTGTGAAATGGATCTA
1 CTCACACGAACTGTGAAATGGACCTA
* *
32066900 CTCACACGAACTGTGAAATGGGCCTG
1 CTCACACGAACTGTGAAATGGACCTA
32066926 CTCA
1 CTCA
32066930 TATGGGCTGT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (26 bp):
CTCACACGAACTGTGAAATGGACCTA
Found at i:32070490 original size:43 final size:43
Alignment explanation
Indices: 32070441--32070556 Score: 126
Period size: 43 Copynumber: 2.7 Consensus size: 43
32070431 TATGTGTTAT
* *
32070441 CATGTAAGACCATGTCTGGGACGTTGGCATCAATTTATGTTTA
1 CATGTAAGACCATGTCTGGGACGTTGGCATCAATATATGATTA
* * * * * * *
32070484 CGTGTAAGACCCTGTTTGGGACAG-CGACATCGATATGTGATTA
1 CATGTAAGACCATGTCTGGGAC-GTTGGCATCAATATATGATTA
*
32070527 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CATGTAAGACCATGTCTGGGACGTTGGCAT
32070557 TGTACGAGTT
Statistics
Matches: 56, Mismatches: 15, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
42 1 0.02
43 54 0.96
44 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (43 bp):
CATGTAAGACCATGTCTGGGACGTTGGCATCAATATATGATTA
Found at i:32074759 original size:8 final size:8
Alignment explanation
Indices: 32074746--32074770 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
32074736 ATATATACTA
32074746 AATAAAAT
1 AATAAAAT
32074754 AATAAAAT
1 AATAAAAT
32074762 AATAAAAT
1 AATAAAAT
32074770 A
1 A
32074771 TCATTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:32078849 original size:13 final size:13
Alignment explanation
Indices: 32078831--32078857 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
32078821 TATGAATTTG
32078831 GCCCATTGTAATT
1 GCCCATTGTAATT
32078844 GCCCATTGTAATT
1 GCCCATTGTAATT
32078857 G
1 G
32078858 GACTTTATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (13 bp):
GCCCATTGTAATT
Found at i:32082049 original size:28 final size:29
Alignment explanation
Indices: 32082026--32082087 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
32082016 AAAAAACTAA
32082026 AAAAATC-TTTAAAAAA-ATATAAAAATAT
1 AAAAATCTTTTAAAAAAGATAT-AAAATAT
32082054 AAAAA-CTTTTAAAAAAGATATAAAATAT
1 AAAAATCTTTTAAAAAAGATATAAAATAT
32082082 AAAAAT
1 AAAAAT
32082088 TAAGATATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
27 1 0.03
28 26 0.84
29 4 0.13
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.27
Consensus pattern (29 bp):
AAAAATCTTTTAAAAAAGATATAAAATAT
Found at i:32082049 original size:29 final size:29
Alignment explanation
Indices: 32082017--32082086 Score: 90
Period size: 28 Copynumber: 2.4 Consensus size: 29
32082007 AAAAACAAAA
32082017 AAAAACTAAAAAAA-TCTTTAAAAAA-ATAT
1 AAAAA-TAAAAAAACT-TTTAAAAAAGATAT
*
32082046 AAAAATATAAAAACTTTTAAAAAAGATAT
1 AAAAATAAAAAAACTTTTAAAAAAGATAT
32082075 AAAATATAAAAA
1 AAAA-ATAAAAA
32082087 TTAAGATATA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
28 16 0.44
29 14 0.39
30 6 0.17
ACGTcount: A:0.70, C:0.04, G:0.01, T:0.24
Consensus pattern (29 bp):
AAAAATAAAAAAACTTTTAAAAAAGATAT
Found at i:32084935 original size:18 final size:17
Alignment explanation
Indices: 32084901--32084950 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 17
32084891 TATTCTAGAA
32084901 AATTTTTAACTTTTTTTA-
1 AATTTTTAA--TTTTTTAG
32084919 ATATTCTTTAATTTTTTAG
1 A-ATT-TTTAATTTTTTAG
32084938 AATTTTTAATTTT
1 AATTTTTAATTTT
32084951 AAAAAATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
17 9 0.31
18 11 0.38
19 4 0.14
20 5 0.17
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (17 bp):
AATTTTTAATTTTTTAG
Found at i:32084988 original size:18 final size:19
Alignment explanation
Indices: 32084965--32085001 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
32084955 AATTTTAAAA
32084965 TATAAAT-TTTTGAATTTT
1 TATAAATATTTTGAATTTT
32084983 TATAAATATTTTGAATTTT
1 TATAAATATTTTGAATTTT
32085002 AAAAATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.59
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:32085002 original size:18 final size:18
Alignment explanation
Indices: 32084965--32085018 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 18
32084955 AATTTTAAAA
32084965 TATAAAT-TTTTGAATTTT
1 TATAAATATTTTGAA-TTT
32084983 TATAAATATTTTGAATTT
1 TATAAATATTTTGAATTT
* *
32085001 TAAAAATTATTTTAAATT
1 TATAAA-TATTTTGAATT
32085019 ATTTTGTAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
18 15 0.47
19 17 0.53
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.56
Consensus pattern (18 bp):
TATAAATATTTTGAATTT
Found at i:32085011 original size:19 final size:18
Alignment explanation
Indices: 32084939--32085018 Score: 60
Period size: 19 Copynumber: 4.6 Consensus size: 18
32084929 ATTTTTTAGA
*
32084939 ATTTTTAATTTTAAAAA-
1 ATTTTGAATTTTAAAAAT
** *
32084956 ATTTT-AA-AATATAAAT
1 ATTTTGAATTTTAAAAAT
*
32084972 -TTTTGAATTTTTATAAAT
1 ATTTTGAA-TTTTAAAAAT
32084990 ATTTTGAATTTTAAAAATT
1 ATTTTGAATTTTAAAAA-T
*
32085009 ATTTTAAATT
1 ATTTTGAATT
32085019 ATTTTGTAGT
Statistics
Matches: 50, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
15 9 0.18
16 4 0.08
17 5 0.10
18 15 0.30
19 17 0.34
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (18 bp):
ATTTTGAATTTTAAAAAT
Found at i:32085118 original size:18 final size:18
Alignment explanation
Indices: 32085095--32085133 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
32085085 ATACTAATTC
*
32085095 ATTATTTGAGTTATTCAA
1 ATTATTTGACTTATTCAA
*
32085113 ATTATTTGACTTATTCTA
1 ATTATTTGACTTATTCAA
32085131 ATT
1 ATT
32085134 GTAAAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.54
Consensus pattern (18 bp):
ATTATTTGACTTATTCAA
Found at i:32088129 original size:40 final size:40
Alignment explanation
Indices: 32088061--32088460 Score: 466
Period size: 40 Copynumber: 10.0 Consensus size: 40
32088051 TATTATATAT
* *
32088061 TGAAATGTATGCGCTTTCAAGCCTTACCTACTGAATCTAC
1 TGAAATGTATGCGCTTTCGAGCCATACCTACTGAATCTAC
* * *
32088101 TGAAATGTATGTGTTTTCGAGCCATACCTATTGAATCTAC
1 TGAAATGTATGCGCTTTCGAGCCATACCTACTGAATCTAC
* * * * *
32088141 TAAAATGTATGTGCTTTCGAGCCATTCCTAATAAATCTAC
1 TGAAATGTATGCGCTTTCGAGCCATACCTACTGAATCTAC
* * * *
32088181 AGAAATGTACGCGCTTTTGAGCCATACCTATTGAATCTAC
1 TGAAATGTATGCGCTTTCGAGCCATACCTACTGAATCTAC
* * *
32088221 TGAAATGTATACGCTTTCTAGCCCTACCTACTGAATCTA-
1 TGAAATGTATGCGCTTTCGAGCCATACCTACTGAATCTAC
* * * *
32088260 TCGAAATATATGCACTTTCGAGCCATACGTATTGAATCTAC
1 T-GAAATGTATGCGCTTTCGAGCCATACCTACTGAATCTAC
* * *
32088301 CGAAATGTATGTGCTTTCGAGCCATACCTACTGAATATAC
1 TGAAATGTATGCGCTTTCGAGCCATACCTACTGAATCTAC
* *
32088341 TGAAAAGTATGTGCTTTCGAGCCATACCTACTGAATCTAC
1 TGAAATGTATGCGCTTTCGAGCCATACCTACTGAATCTAC
* * *
32088381 TGAAATGTATGCGCTTTTGAGCCATACCTA-TCGATTCTCC
1 TGAAATGTATGCGCTTTCGAGCCATACCTACT-GAATCTAC
* *
32088421 TGAAA-GTATGCCCTATT-GAGCCATACCTACTGATTCTAC
1 TGAAATGTATGCGCT-TTCGAGCCATACCTACTGAATCTAC
32088460 T
1 T
32088461 AAAAGCTGCT
Statistics
Matches: 306, Mismatches: 49, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
39 30 0.10
40 276 0.90
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.33
Consensus pattern (40 bp):
TGAAATGTATGCGCTTTCGAGCCATACCTACTGAATCTAC
Found at i:32094960 original size:20 final size:20
Alignment explanation
Indices: 32094937--32094974 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
32094927 TTAAATCTAA
32094937 TTAATGTA-GTTTAATCAAAC
1 TTAATGTATG-TTAATCAAAC
*
32094957 TTAATTTATGTTAATCAA
1 TTAATGTATGTTAATCAA
32094975 GCTATTATCT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 15 0.94
21 1 0.06
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.45
Consensus pattern (20 bp):
TTAATGTATGTTAATCAAAC
Found at i:32096598 original size:25 final size:21
Alignment explanation
Indices: 32096545--32096586 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
32096535 TAGACATGAA
32096545 AATAAATAAAAATTATATAAG
1 AATAAATAAAAATTATATAAG
32096566 AATAAATAAAAATTATATAAG
1 AATAAATAAAAATTATATAAG
32096587 TGTGAATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.29
Consensus pattern (21 bp):
AATAAATAAAAATTATATAAG
Found at i:32097388 original size:157 final size:158
Alignment explanation
Indices: 32097172--32097565 Score: 593
Period size: 157 Copynumber: 2.5 Consensus size: 158
32097162 AATCAAAACC
32097172 TTATTTCT-AAATAGTT--AAAAAAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAA
1 TTATTT-TGAAATAGTTGAAAAAAAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAA
*
32097234 AATGACTTAAAAAAACAAATTTTTATTTTTCAAAATCTAAACTTTCTC-CTTATTTAAA-AAAAA
65 AATGACTAAAAAAAACAAATTTTTATTTTTCAAAATCTAAACTTTCTCACTTATTTAAATAAAAA
*
32097297 ACACACTGTTTTTCTTAAAGATTGAAGCTT
130 A-ACACTATTTTTCTTAAAGATTGAAGCTT
*
32097327 TTATTTTGAAATAGTTGAAAAAAAAAATCAAAACTTTATTTTAAAATTTTAAACTTTCCTTTAAA
1 TTATTTTGAAATAGTTGAAAAAAAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAA
* * *
32097392 ATGACTAAAAAAAACAGATTTTTATTTTTCAAAATCTAAACTTTCTCATTTTTTTTAAATAAAAA
66 ATGACTAAAAAAAACAAATTTTTATTTTTCAAAATCTAAACTTTCTCA-CTTATTTAAATAAAAA
* *
32097457 AATATTATTTTTCTTAAAGATTGAAGCTT
130 AACACTATTTTTCTTAAAGATTGAAGCTT
* * *
32097486 TTACTTTGAAGTAGTTGAAAAAAAAAAATCAAAACTTTGTTTTAAAAATTT-AACATTTCCTTTA
1 TTATTTTGAAATAGTTG-AAAAAAAAAATCAAAACTTTGTTTTAAAATTTTAAAC-TTTCCTTTA
*
32097550 AAATAACTAAAAAAAA
64 AAATGACTAAAAAAAA
32097566 ATTATTTGTG
Statistics
Matches: 218, Mismatches: 13, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
154 1 0.00
155 14 0.06
157 91 0.42
159 51 0.23
160 61 0.28
ACGTcount: A:0.45, C:0.10, G:0.05, T:0.40
Consensus pattern (158 bp):
TTATTTTGAAATAGTTGAAAAAAAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAA
ATGACTAAAAAAAACAAATTTTTATTTTTCAAAATCTAAACTTTCTCACTTATTTAAATAAAAAA
ACACTATTTTTCTTAAAGATTGAAGCTT
Found at i:32097434 original size:52 final size:50
Alignment explanation
Indices: 32097208--32097436 Score: 128
Period size: 52 Copynumber: 4.4 Consensus size: 50
32097198 CAAAACTTTG
* *
32097208 TTTTAAAATTTTAAACTTTCCTTTAAAATGACTTAAAAAAACAAATTTTTAT
1 TTTTAAAA-TCTAAACTTTCCTTTAAAATGA-TAAAAAAAACAAATTTTTAT
* * * * *
32097260 TTTTCAAAATCTAAACTTTCTCCTT--ATTTA-AAAAAAAACACACTGTTT-T
1 TTTT-AAAATCTAAACTTTC-CTTTAAAATGATAAAAAAAACA-AATTTTTAT
* * ** * **
32097309 TCTTAAAGAT-TGAAGCTTTTATTTTGAAATAGTTGAAAAAAAAAATCAAAACTTTA-
1 TTTTAAA-ATCT-AAAC-TTTCCTTT-AAA-A--TGATAAAAAAAA-CAAATTTTTAT
* *
32097365 TTTTAAAATTTTAAACTTTCCTTTAAAATGACTAAAAAAAACAGATTTTTAT
1 TTTTAAAA-TCTAAACTTTCCTTTAAAATGA-TAAAAAAAACAAATTTTTAT
32097417 TTTTCAAAATCTAAACTTTC
1 TTTT-AAAATCTAAACTTTC
32097437 TCATTTTTTT
Statistics
Matches: 131, Mismatches: 26, Indels: 40
0.66 0.13 0.20
Matches are distributed among these distances:
48 4 0.03
49 20 0.15
50 8 0.06
51 13 0.10
52 37 0.28
53 12 0.09
54 3 0.02
55 9 0.07
56 22 0.17
57 3 0.02
ACGTcount: A:0.43, C:0.12, G:0.04, T:0.41
Consensus pattern (50 bp):
TTTTAAAATCTAAACTTTCCTTTAAAATGATAAAAAAAACAAATTTTTAT
Found at i:32098353 original size:39 final size:39
Alignment explanation
Indices: 32098309--32098390 Score: 119
Period size: 39 Copynumber: 2.1 Consensus size: 39
32098299 AAATGAAAAG
* *
32098309 TAAACTAGAAAAGTAAATAGACCTCTACACATGGGCCTC
1 TAAACTAGAAAAGTAAACAGACCTCCACACATGGGCCTC
* * *
32098348 TAAACTAGAAAAGTAAACATACCTCCACACTTGGGTCTC
1 TAAACTAGAAAAGTAAACAGACCTCCACACATGGGCCTC
32098387 TAAA
1 TAAA
32098391 TGCAATGAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.41, C:0.23, G:0.13, T:0.22
Consensus pattern (39 bp):
TAAACTAGAAAAGTAAACAGACCTCCACACATGGGCCTC
Found at i:32098414 original size:42 final size:42
Alignment explanation
Indices: 32098368--32098734 Score: 493
Period size: 42 Copynumber: 8.8 Consensus size: 42
32098358 AAGTAAACAT
* *
32098368 ACCTCCACACTTGGGTCTCTAAATGCAATGAAAAGTGAATGA
1 ACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGG
* * * * *
32098410 ACCTCCACACCTAGGTCTCTAAATGCAATTAAAAATGAACGA
1 ACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGG
*
32098452 ACCTCCAGACCTGGGTCTCTAAATGCAATGAAAAGTGAATGG
1 ACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGG
* *
32098494 ACCT-CACACCTGGGTTTCTAAATGCAATGAAAAGTGAACGG
1 ACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGG
* ***
32098535 ATCAAAACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGG
1 ACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGG
*
32098577 ACCCCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGG
1 ACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGG
* * *
32098619 ACCTCCACACTTGGGTTTCTAAATGCAATGAAAAGTGAACGG
1 ACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGG
* ***
32098661 ATCAAAACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGG
1 ACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGG
* ** *
32098703 ACCTCCATACCTATGTCTCTAGATGCAATGAA
1 ACCTCCACACCTGGGTCTCTAAATGCAATGAA
32098735 TGTTTTCCTT
Statistics
Matches: 282, Mismatches: 42, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
41 36 0.13
42 246 0.87
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (42 bp):
ACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGG
Found at i:32098474 original size:84 final size:84
Alignment explanation
Indices: 32098316--32098734 Score: 495
Period size: 84 Copynumber: 5.0 Consensus size: 84
32098306 AAGTAAACTA
* * * * * * * **
32098316 GAAAAGTAAATAGACCTCTACACATGGGCCTCTAAA--CTA-GAAAAGTAAACATACCTCCACAC
1 GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAACGGACCTCCACAC
*
32098378 TTGGGTCTCTAAATGCAAT
66 CTGGGTCTCTAAATGCAAT
* * * * * *
32098397 GAAAAGTGAATGAACCTCCACACCTAGGTCTCTAAATGCAATTAAAAATGAACGAACCTCCAGAC
1 GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAACGGACCTCCACAC
32098462 CTGGGTCTCTAAATGCAAT
66 CTGGGTCTCTAAATGCAAT
* * ***
32098481 GAAAAGTGAATGGACCT-CACACCTGGGTTTCTAAATGCAATGAAAAGTGAACGGATCAAAACAC
1 GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAACGGACCTCCACAC
32098545 CTGGGTCTCTAAATGCAAT
66 CTGGGTCTCTAAATGCAAT
* *
32098564 GAAAAGTGAATGGACCCCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGGACCTCCACAC
1 GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAACGGACCTCCACAC
* *
32098629 TTGGGTTTCTAAATGCAAT
66 CTGGGTCTCTAAATGCAAT
* * *** * *
32098648 GAAAAGTGAACGGATCAAAACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGGACCTCCATAC
1 GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAACGGACCTCCACAC
** *
32098713 CTATGTCTCTAGATGCAAT
66 CTGGGTCTCTAAATGCAAT
32098732 GAA
1 GAA
32098735 TGTTTTCCTT
Statistics
Matches: 288, Mismatches: 46, Indels: 5
0.85 0.14 0.01
Matches are distributed among these distances:
81 29 0.10
83 74 0.26
84 185 0.64
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (84 bp):
GAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAACGGACCTCCACAC
CTGGGTCTCTAAATGCAAT
Found at i:32098679 original size:126 final size:126
Alignment explanation
Indices: 32098368--32098734 Score: 556
Period size: 125 Copynumber: 2.9 Consensus size: 126
32098358 AAGTAAACAT
* * * * *** *
32098368 ACCTCCACACTTGGGTCTCTAAATGCAATGAAAAGTGAATGAACCTCCACACCTAGGTCTCTAAA
1 ACCTCCACACTTGGGTTTCTAAATGCAATGAAAAGTGAACGGATCAAAACACCTGGGTCTCTAAA
* * * * *
32098433 TGCAATTAAAAATGAACGAACCTCCAGACCTGGGTCTCTAAATGCAATGAAAAGTGAATGG
66 TGCAATGAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGG
*
32098494 ACCT-CACACCTGGGTTTCTAAATGCAATGAAAAGTGAACGGATCAAAACACCTGGGTCTCTAAA
1 ACCTCCACACTTGGGTTTCTAAATGCAATGAAAAGTGAACGGATCAAAACACCTGGGTCTCTAAA
*
32098558 TGCAATGAAAAGTGAATGGACCCCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGG
66 TGCAATGAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGG
32098619 ACCTCCACACTTGGGTTTCTAAATGCAATGAAAAGTGAACGGATCAAAACACCTGGGTCTCTAAA
1 ACCTCCACACTTGGGTTTCTAAATGCAATGAAAAGTGAACGGATCAAAACACCTGGGTCTCTAAA
* ** *
32098684 TGCAATGAAAAGTGAATGGACCTCCATACCTATGTCTCTAGATGCAATGAA
66 TGCAATGAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAATGAA
32098735 TGTTTTCCTT
Statistics
Matches: 219, Mismatches: 21, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
125 110 0.50
126 109 0.50
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (126 bp):
ACCTCCACACTTGGGTTTCTAAATGCAATGAAAAGTGAACGGATCAAAACACCTGGGTCTCTAAA
TGCAATGAAAAGTGAATGGACCTCCACACCTGGGTCTCTAAATGCAATGAAAAGTGAATGG
Found at i:32108689 original size:20 final size:20
Alignment explanation
Indices: 32108666--32108712 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
32108656 GGGTTAAAAT
*
32108666 TGAGCTGAATTAAGCTTGAG
1 TGAGCTGAATTAAGCTCGAG
* * *
32108686 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTAAGCTCGAG
32108706 TGAGCTG
1 TGAGCTG
32108713 GAAACGAGCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.13, G:0.34, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTAAGCTCGAG
Found at i:32110434 original size:48 final size:48
Alignment explanation
Indices: 32110382--32110487 Score: 137
Period size: 48 Copynumber: 2.2 Consensus size: 48
32110372 TTGTCTTTTC
*
32110382 TTTCTTTTTCAATTT-TCTCT-TTTTCCTCACA-CTTTTGTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTT--TCACATCCTTT-TTCAATCTCAA
* *
32110430 TTTCTTTTTCGATTTCTTTCTCTTTTTCACATCCTTTTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
32110478 TTTCTTTTTC
1 TTTCTTTTTC
32110488 CATGACACTC
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.14, C:0.25, G:0.02, T:0.59
Consensus pattern (48 bp):
TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
Found at i:32113122 original size:20 final size:20
Alignment explanation
Indices: 32113099--32113145 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
32113089 GGGTTAAAAT
*
32113099 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
32113119 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
32113139 TGAGCTG
1 TGAGCTG
32113146 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:32117822 original size:27 final size:27
Alignment explanation
Indices: 32117791--32117843 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
32117781 AAATGGTAGG
32117791 TAAGATCTTAAGGACGAACCTAAATCT
1 TAAGATCTTAAGGACGAACCTAAATCT
*
32117818 TAAGATCTTAAGGACTAACCTAAATC
1 TAAGATCTTAAGGACGAACCTAAATC
32117844 CAAATGTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.42, C:0.19, G:0.13, T:0.26
Consensus pattern (27 bp):
TAAGATCTTAAGGACGAACCTAAATCT
Found at i:32118295 original size:25 final size:24
Alignment explanation
Indices: 32118249--32118295 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
32118239 ATAAATATAA
**
32118249 AACATTAAAATATAGTGCATAATT
1 AACATTAAAATATAAAGCATAATT
*
32118273 AACATTAAATATATAAAGTATAA
1 AACATTAAA-ATATAAAGCATAA
32118296 ATGCAAGTGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 9 0.47
25 10 0.53
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.32
Consensus pattern (24 bp):
AACATTAAAATATAAAGCATAATT
Found at i:32118827 original size:21 final size:20
Alignment explanation
Indices: 32118797--32118841 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
32118787 AAATAGTTAA
32118797 AAAAAATTAAAACTTTGT-TTT
1 AAAAAATTAAAA-TTT-TCTTT
*
32118818 AAAAATTTAAAATTTTCTTT
1 AAAAAATTAAAATTTTCTTT
32118838 AAAA
1 AAAA
32118842 TGACTTAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 10 0.45
21 11 0.50
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.42
Consensus pattern (20 bp):
AAAAAATTAAAATTTTCTTT
Found at i:32118906 original size:156 final size:150
Alignment explanation
Indices: 32118736--32119212 Score: 471
Period size: 156 Copynumber: 3.1 Consensus size: 150
32118726 AAAATCAAAG
* * * * *
32118736 TTTTATTTAGAAAAAAATATTAGTTTTGTTAAAAGTCAAAAGCTTATTTCAAAATAGTT-AAAAA
1 TTTTATTTAAAAAAAAATACTAATTTTATT-AAAGT-TAAAGCTTATTT-AAAATAGTTCAAAAA
32118800 AAATTAAAACTTTGTTTTAAAAATTTAAAATTTTCTTTAAAATGACTTAAAAAAACATATTTTTA
63 AAATTAAAACTTTGTTTTAAAAATTTAAAATTTTCTTTAAAATGACTTAAAAAAACATATTTTTA
32118865 TTTTTCAAAATCTAAACTTTCTCC
128 TTTTTCAAAATCTAAACTTTCT-C
* * * * *
32118889 TTTTTTTTTTAAAAAAAAATACTAATTTTATTAAAGTTTGAAGTTTTTATTTTTACATAGTTTCA
1 --TTTTATTTAAAAAAAAATACTAATTTTATTAAAG-TTAAAG--CTTA-TTTAAAATAG-TTCA
* * *
32118954 AAAAAAA-TAAAACTTTGTTTTAAAATTTTACAATTTCCTTTAAAATGAC-T-AAAAAACTATAT
59 AAAAAAATTAAAACTTTGTTTTAAAAATTTAAAATTTTCTTTAAAATGACTTAAAAAAAC-ATAT
*
32119016 TTTTATTTTTCAAAATCTAAAATTTCTC
123 TTTTATTTTTCAAAATCTAAACTTTCTC
* * * * *
32119044 TTTTATTTAAAAAAAAACACTATTTTTCTTAAAGATTAAAGCTTTTACTTTGAAATAGTTGAAAA
1 TTTTATTTAAAAAAAAATACTAATTTTATTAAAG-TTAAAGC--TTA-TTTAAAATAGTTCAAAA
* * * * * *
32119109 CAAAATTAAAACTTTATTTTAAAAATTT-AAATTTTCTTTTAAAATAACTAAAATAAAATAAAAT
62 -AAAATTAAAACTTTGTTTTAAAAATTTAAAATTTTC-TTTAAAATGACTTAAA-AAAACATATT
* * * *
32119173 ATTATTTATCAAAATCTAAACTCTGT-
124 TTTATTTTTCAAAATCTAAACTTTCTC
*
32119199 TTTTTTTTAAAAAA
1 TTTTATTTAAAAAA
32119213 TTACAACTTT
Statistics
Matches: 267, Mismatches: 40, Indels: 30
0.79 0.12 0.09
Matches are distributed among these distances:
152 6 0.02
153 56 0.21
154 37 0.14
155 47 0.18
156 65 0.24
157 48 0.18
158 8 0.03
ACGTcount: A:0.44, C:0.08, G:0.04, T:0.44
Consensus pattern (150 bp):
TTTTATTTAAAAAAAAATACTAATTTTATTAAAGTTAAAGCTTATTTAAAATAGTTCAAAAAAAA
TTAAAACTTTGTTTTAAAAATTTAAAATTTTCTTTAAAATGACTTAAAAAAACATATTTTTATTT
TTCAAAATCTAAACTTTCTC
Found at i:32119135 original size:20 final size:20
Alignment explanation
Indices: 32119110--32119152 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
32119100 AGTTGAAAAC
32119110 AAAATTAAAACTTTATTTTA
1 AAAATTAAAACTTTATTTTA
* * *
32119130 AAAATTTAAATTTTCTTTTA
1 AAAATTAAAACTTTATTTTA
32119150 AAA
1 AAA
32119153 TAACTAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.47
Consensus pattern (20 bp):
AAAATTAAAACTTTATTTTA
Found at i:32121183 original size:28 final size:28
Alignment explanation
Indices: 32121141--32121271 Score: 156
Period size: 28 Copynumber: 4.7 Consensus size: 28
32121131 AACACATCAA
* * *
32121141 GAAATAATAAGCCTTTGTGGCGAACAAT
1 GAAAGAATAAACCTTTGTGGCGAACTAT
*
32121169 GAAAGAATAAACCTTTGTGGCAAACTAT
1 GAAAGAATAAACCTTTGTGGCGAACTAT
*
32121197 GAAAGAATAAGCCTTTGTGGCGAACTAT
1 GAAAGAATAAACCTTTGTGGCGAACTAT
* ** *
32121225 GAAGGAATAAACCTTTGTGATGAGCTAT
1 GAAAGAATAAACCTTTGTGGCGAACTAT
* *
32121253 GAAAG-ATTAGCCTTTGTGG
1 GAAAGAATAAACCTTTGTGG
32121272 TGGACTCCGT
Statistics
Matches: 88, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 11 0.12
28 77 0.88
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.27
Consensus pattern (28 bp):
GAAAGAATAAACCTTTGTGGCGAACTAT
Found at i:32121233 original size:56 final size:56
Alignment explanation
Indices: 32121141--32121271 Score: 183
Period size: 56 Copynumber: 2.4 Consensus size: 56
32121131 AACACATCAA
* *
32121141 GAAATAATAAGCCTTTGTGGCGAACAATGAAAGAATAAACCTTTGTGGCAAACTAT
1 GAAAGAATAAGCCTTTGTGGCGAACAATGAAAGAATAAACCTTTGTGACAAACTAT
* * ** *
32121197 GAAAGAATAAGCCTTTGTGGCGAACTATGAAGGAATAAACCTTTGTGATGAGCTAT
1 GAAAGAATAAGCCTTTGTGGCGAACAATGAAAGAATAAACCTTTGTGACAAACTAT
*
32121253 GAAAG-ATTAGCCTTTGTGG
1 GAAAGAATAAGCCTTTGTGG
32121272 TGGACTCCGT
Statistics
Matches: 67, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
55 13 0.19
56 54 0.81
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.27
Consensus pattern (56 bp):
GAAAGAATAAGCCTTTGTGGCGAACAATGAAAGAATAAACCTTTGTGACAAACTAT
Found at i:32122879 original size:17 final size:17
Alignment explanation
Indices: 32122857--32122890 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
32122847 GTAAATAATG
*
32122857 TTATTATTATAATTATA
1 TTATTATAATAATTATA
*
32122874 TTATTATAATATTTATA
1 TTATTATAATAATTATA
32122891 AAACATAAAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TTATTATAATAATTATA
Found at i:32124673 original size:18 final size:18
Alignment explanation
Indices: 32124650--32124690 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
32124640 AATTTGATCC
32124650 ACACGACCTCAGTTTGTT
1 ACACGACCTCAGTTTGTT
32124668 ACACGACCTCAGTTTGTT
1 ACACGACCTCAGTTTGTT
32124686 ACACG
1 ACACG
32124691 TCCTAACTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.29
Consensus pattern (18 bp):
ACACGACCTCAGTTTGTT
Found at i:32127849 original size:15 final size:15
Alignment explanation
Indices: 32127831--32127859 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
32127821 AGAAGTTGTT
32127831 TGTAGTTGATGTTGG
1 TGTAGTTGATGTTGG
32127846 TGTAGTTGATGTTG
1 TGTAGTTGATGTTG
32127860 AATTTCTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.00, G:0.38, T:0.48
Consensus pattern (15 bp):
TGTAGTTGATGTTGG
Found at i:32132544 original size:15 final size:15
Alignment explanation
Indices: 32132503--32132549 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 15
32132493 TTGGTTTCAA
32132503 TTATTATTTCAATATGT
1 TTATTATTT-AATAT-T
*
32132520 TTAATT-TTTATTATT
1 TT-ATTATTTAATATT
32132535 TTATTATTTAATATT
1 TTATTATTTAATATT
32132550 CGATATATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
14 3 0.12
15 11 0.42
16 4 0.15
17 5 0.19
18 3 0.12
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (15 bp):
TTATTATTTAATATT
Found at i:32141844 original size:30 final size:30
Alignment explanation
Indices: 32141788--32141844 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
32141778 TAAACCTCTT
*
32141788 CACTTTCCTCCCAAAATTTTTACTCCCTCA
1 CACTTTCCTCCCAAAACTTTTACTCCCTCA
* *
32141818 CACTTTCC-CCTCATAACTTTTGCTCCC
1 CACTTTCCTCC-CAAAACTTTTACTCCC
32141845 CTCCCATCCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 2 0.09
30 21 0.91
ACGTcount: A:0.19, C:0.42, G:0.02, T:0.37
Consensus pattern (30 bp):
CACTTTCCTCCCAAAACTTTTACTCCCTCA
Found at i:32142249 original size:38 final size:37
Alignment explanation
Indices: 32142195--32142274 Score: 92
Period size: 38 Copynumber: 2.2 Consensus size: 37
32142185 GGTATCAATT
*
32142195 TCACATTTTATCTTTAAGATAATTTTT-ATTAAAAAA
1 TCACATTTTATCTTTAAAATAATTTTTAATTAAAAAA
* * *
32142231 TCACATTTTTTACATTTAAAATATTTTTTAATTTAAAAA
1 TCACATTTTAT-C-TTTAAAATAATTTTTAATTAAAAAA
32142270 T-ACAT
1 TCACAT
32142275 AGTGACGAGA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
36 10 0.27
37 1 0.03
38 17 0.46
39 9 0.24
ACGTcount: A:0.41, C:0.09, G:0.01, T:0.49
Consensus pattern (37 bp):
TCACATTTTATCTTTAAAATAATTTTTAATTAAAAAA
Found at i:32142271 original size:18 final size:18
Alignment explanation
Indices: 32142235--32142268 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
32142225 AAAAAATCAC
32142235 ATTTTTTACATTTAAAAT
1 ATTTTTTACATTTAAAAT
32142253 ATTTTTTA-ATTTAAAA
1 ATTTTTTACATTTAAAA
32142269 ATACATAGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (18 bp):
ATTTTTTACATTTAAAAT
Found at i:32142905 original size:42 final size:42
Alignment explanation
Indices: 32142817--32142945 Score: 204
Period size: 43 Copynumber: 3.0 Consensus size: 42
32142807 ATGTCATTAT
*
32142817 AGAACATGACCTTTAGCGGCGCTTTCCCCACAAACGCCGCTCA
1 AGAACATGACCTTTAGCGGCGCTTT-CCCACAAACGCCGCTAA
* *
32142860 AGAACATGACCTTTAGCGACGCTTTCCCACAAACACCGCTAA
1 AGAACATGACCTTTAGCGGCGCTTTCCCACAAACGCCGCTAA
*
32142902 AGAACATGACCTTTAGCGGTGCTCTTCCCACAAACGCCGCTAA
1 AGAACATGACCTTTAGCGGCGCT-TTCCCACAAACGCCGCTAA
32142945 A
1 A
32142946 AAATATGGTC
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
42 36 0.46
43 43 0.54
ACGTcount: A:0.29, C:0.34, G:0.17, T:0.19
Consensus pattern (42 bp):
AGAACATGACCTTTAGCGGCGCTTTCCCACAAACGCCGCTAA
Found at i:32152238 original size:41 final size:41
Alignment explanation
Indices: 32152181--32152528 Score: 419
Period size: 41 Copynumber: 8.5 Consensus size: 41
32152171 CATATAGTGG
* * *
32152181 CGTTTTTTAAGAAGCGCCGCTAATGCTCGGGCCGTCAGCGA
1 CGTTTTTGAAGAAGCGCCGCTAATGCTCGGGCCTTTAGCGA
**
32152222 CGTTTTTGAAGAAGCGCCGCTAATGCTCTAGCCTTTAGCGA
1 CGTTTTTGAAGAAGCGCCGCTAATGCTCGGGCCTTTAGCGA
* * * * * *
32152263 CATTTTTTAAGCAGTGTCGCTAATGCTCTGGCCTTTAGCGA
1 CGTTTTTGAAGAAGCGCCGCTAATGCTCGGGCCTTTAGCGA
* * * * * *
32152304 CGTTTCTTCAA-AAACGCCGCTACTGCTGGGGTCTTTAGCGG
1 CGTTT-TTGAAGAAGCGCCGCTAATGCTCGGGCCTTTAGCGA
* * *
32152345 CGTTTTTGAAGCAGCACCGCTAATGCTCGGGCCTTTAGCGG
1 CGTTTTTGAAGAAGCGCCGCTAATGCTCGGGCCTTTAGCGA
* * *
32152386 CGTTTTTGAAGAAGCGCCGCTAATACTCGGGCCCTTAGCGG
1 CGTTTTTGAAGAAGCGCCGCTAATGCTCGGGCCTTTAGCGA
* * *
32152427 TGTTTTTGAAGAAGCGCCGCTAATGGTCGGGCCTTTAGCGG
1 CGTTTTTGAAGAAGCGCCGCTAATGCTCGGGCCTTTAGCGA
* *
32152468 CGTTTTTGAGGAAGCGCCGCTAGTGCTCGGGCCTTTAGCGA
1 CGTTTTTGAAGAAGCGCCGCTAATGCTCGGGCCTTTAGCGA
*
32152509 CGTTTTTGTAGAAGCGCCGC
1 CGTTTTTGAAGAAGCGCCGC
32152529 AAAAACATTT
Statistics
Matches: 261, Mismatches: 44, Indels: 4
0.84 0.14 0.01
Matches are distributed among these distances:
40 4 0.02
41 253 0.97
42 4 0.02
ACGTcount: A:0.18, C:0.25, G:0.29, T:0.28
Consensus pattern (41 bp):
CGTTTTTGAAGAAGCGCCGCTAATGCTCGGGCCTTTAGCGA
Found at i:32152935 original size:14 final size:15
Alignment explanation
Indices: 32152907--32152939 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
32152897 AAGGTTTATA
32152907 GATTATGGAATTAGG
1 GATTATGGAATTAGG
32152922 GATTATGG-ATTAGG
1 GATTATGGAATTAGG
32152936 GATT
1 GATT
32152940 CTGATTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.36
Consensus pattern (15 bp):
GATTATGGAATTAGG
Found at i:32152981 original size:7 final size:7
Alignment explanation
Indices: 32152971--32153071 Score: 51
Period size: 7 Copynumber: 14.1 Consensus size: 7
32152961 AAGGTTTATT
32152971 GGTTAGG
1 GGTTAGG
32152978 GGTTAGG
1 GGTTAGG
*
32152985 GGTTAGA
1 GGTTAGG
*
32152992 GGTTAGA
1 GGTTAGG
*
32152999 AGTTAGG
1 GGTTAGG
* *
32153006 AGTTTAAG
1 -GGTTAGG
* *
32153014 GTTTATTG
1 GGTTA-GG
*
32153022 GTTTAGG
1 GGTTAGG
*
32153029 GATTAGG
1 GGTTAGG
32153036 GGTTA-G
1 GGTTAGG
*
32153042 GGTTTGG
1 GGTTAGG
* *
32153049 GATTTAAG
1 G-GTTAGG
32153057 GGTTAGG
1 GGTTAGG
*
32153064 AGTTAGG
1 GGTTAGG
32153071 G
1 G
32153072 ATTTAGTGTT
Statistics
Matches: 72, Mismatches: 18, Indels: 8
0.73 0.18 0.08
Matches are distributed among these distances:
6 5 0.07
7 53 0.74
8 14 0.19
ACGTcount: A:0.22, C:0.00, G:0.44, T:0.35
Consensus pattern (7 bp):
GGTTAGG
Found at i:32153059 original size:21 final size:21
Alignment explanation
Indices: 32153021--32153076 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 21
32153011 AAGGTTTATT
*
32153021 GGTTTAGGGA-TTAGGGGTTAG
1 GGTTT-GGGATTTAAGGGTTAG
32153042 GGTTTGGGATTTAAGGGTTAG
1 GGTTTGGGATTTAAGGGTTAG
*
32153063 GAGTTAGGGATTTA
1 G-GTTTGGGATTTA
32153077 GTGTTTTGGG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
20 4 0.13
21 16 0.52
22 11 0.35
ACGTcount: A:0.21, C:0.00, G:0.43, T:0.36
Consensus pattern (21 bp):
GGTTTGGGATTTAAGGGTTAG
Found at i:32153771 original size:16 final size:16
Alignment explanation
Indices: 32153750--32153805 Score: 60
Period size: 16 Copynumber: 3.5 Consensus size: 16
32153740 ACTTAGTAAT
32153750 TAAAAGATACAATTAA
1 TAAAAGATACAATTAA
*
32153766 TAAAAGATACTATTAA
1 TAAAAGATACAATTAA
* * *
32153782 GAAATAAATA-AATAAA
1 TAAA-AGATACAATTAA
32153798 TAAAAGAT
1 TAAAAGAT
32153806 GTGAGATTTA
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
15 3 0.09
16 25 0.78
17 4 0.12
ACGTcount: A:0.64, C:0.04, G:0.07, T:0.25
Consensus pattern (16 bp):
TAAAAGATACAATTAA
Found at i:32154169 original size:24 final size:24
Alignment explanation
Indices: 32154121--32154166 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
32154111 CACTTAGCCG
32154121 AAATTCCCCCCAAATTTCTCCCCA
1 AAATTCCCCCCAAATTTCTCCCCA
* *
32154145 AAATTCCCCTCGAATTT-TCCCC
1 AAATTCCCCCCAAATTTCTCCCC
32154167 CAATTCTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.26, C:0.43, G:0.02, T:0.28
Consensus pattern (24 bp):
AAATTCCCCCCAAATTTCTCCCCA
Found at i:32155592 original size:22 final size:22
Alignment explanation
Indices: 32155567--32155608 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
32155557 CGCTGTTATT
32155567 ATATAATACATAACTTACATTA
1 ATATAATACATAACTTACATTA
*
32155589 ATATTATACATAACTTACAT
1 ATATAATACATAACTTACAT
32155609 AACTTAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (22 bp):
ATATAATACATAACTTACATTA
Found at i:32155886 original size:25 final size:24
Alignment explanation
Indices: 32155851--32155901 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 24
32155841 TGAAATCCCA
32155851 TTTTTGAAAATTTAATTTAATATATT
1 TTTTTGAAAATTTAATTT-ATAT-TT
32155877 TTTTTG-AAATTTAATTTATATTT
1 TTTTTGAAAATTTAATTTATATTT
32155900 TT
1 TT
32155902 AATATAATAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
23 4 0.16
24 4 0.16
25 11 0.44
26 6 0.24
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (24 bp):
TTTTTGAAAATTTAATTTATATTT
Found at i:32155934 original size:25 final size:25
Alignment explanation
Indices: 32155905--32155975 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
32155895 TATTTTTAAT
* *
32155905 ATAATACATAACTTACTTAATTTTC
1 ATAATACATAACTTACATAATTTAC
* *
32155930 ATAATAAATAACTTACATAACTTAC
1 ATAATACATAACTTACATAATTTAC
32155955 ATAATACATAACTTACATAAT
1 ATAATACATAACTTACATAAT
32155976 ACACAACTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.37
Consensus pattern (25 bp):
ATAATACATAACTTACATAATTTAC
Found at i:32155962 original size:16 final size:16
Alignment explanation
Indices: 32155943--32156056 Score: 126
Period size: 16 Copynumber: 7.0 Consensus size: 16
32155933 ATAAATAACT
32155943 TACATAACTTACATAA
1 TACATAACTTACATAA
32155959 TACATAACTTACATAA
1 TACATAACTTACATAA
*
32155975 TACACAACTTACATAA
1 TACATAACTTACATAA
*
32155991 TTTTCATAA--TACATAA
1 --TACATAACTTACATAA
*
32156007 CTTACATAA-TATTCATAA
1 --TACATAACT-TACATAA
*
32156025 TAAATAACTTACATAA
1 TACATAACTTACATAA
32156041 TACATAACTTACATAA
1 TACATAACTTACATAA
32156057 CTTACATAGC
Statistics
Matches: 84, Mismatches: 9, Indels: 10
0.82 0.09 0.10
Matches are distributed among these distances:
16 72 0.86
17 1 0.01
18 11 0.13
ACGTcount: A:0.49, C:0.18, G:0.00, T:0.33
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:32155976 original size:41 final size:41
Alignment explanation
Indices: 32155929--32156056 Score: 179
Period size: 41 Copynumber: 3.1 Consensus size: 41
32155919 ACTTAATTTT
*
32155929 CATAATAAATAACTTACATAACTTACATAATACATAACTTA
1 CATAATACATAACTTACATAACTTACATAATACATAACTTA
* * *
32155970 CATAATACACAACTTACATAATTTTCATAATACATAACTTA
1 CATAATACATAACTTACATAACTTACATAATACATAACTTA
*
32156011 CATAATATTCATAA--TAAATAACTTACATAATACATAACTTA
1 CATAATA--CATAACTTACATAACTTACATAATACATAACTTA
32156052 CATAA
1 CATAA
32156057 CTTACATAGC
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
41 73 0.95
43 4 0.05
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (41 bp):
CATAATACATAACTTACATAACTTACATAATACATAACTTA
Found at i:32155984 original size:66 final size:66
Alignment explanation
Indices: 32155905--32156056 Score: 243
Period size: 66 Copynumber: 2.3 Consensus size: 66
32155895 TATTTTTAAT
* *
32155905 ATAATACATAACTTACTTAATTTTCATAATAAATAACTTACATAACT-TACATAATACATAACTT
1 ATAATACATAACTTACATAATTTTCATAATAAATAACTTACATAA-TATACATAATAAATAACTT
32155969 AC
65 AC
* * *
32155971 ATAATACACAACTTACATAATTTTCATAATACATAACTTACATAATATTCATAATAAATAACTTA
1 ATAATACATAACTTACATAATTTTCATAATAAATAACTTACATAATATACATAATAAATAACTTA
32156036 C
66 C
32156037 ATAATACATAACTTACATAA
1 ATAATACATAACTTACATAA
32156057 CTTACATAGC
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
65 1 0.01
66 78 0.99
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35
Consensus pattern (66 bp):
ATAATACATAACTTACATAATTTTCATAATAAATAACTTACATAATATACATAATAAATAACTTA
C
Found at i:32155987 original size:25 final size:25
Alignment explanation
Indices: 32155943--32156064 Score: 107
Period size: 25 Copynumber: 5.0 Consensus size: 25
32155933 ATAAATAACT
32155943 TACATAACTTACATAA--TACATAA
1 TACATAACTTACATAACTTACATAA
*
32155966 CTTACATAA--TACACAACTTACATAA
1 --TACATAACTTACATAACTTACATAA
*
32155991 TTTTCATAA--TACATAACTTACATAA
1 --TACATAACTTACATAACTTACATAA
*
32156016 TATTCATAA--TAAATAACTTACATAA
1 TA--CATAACTTACATAACTTACATAA
32156041 TACATAACTTACATAACTTACATA
1 TACATAACTTACATAACTTACATA
32156065 GCTTAATTAT
Statistics
Matches: 84, Mismatches: 7, Indels: 12
0.82 0.07 0.12
Matches are distributed among these distances:
23 12 0.14
25 72 0.86
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.34
Consensus pattern (25 bp):
TACATAACTTACATAACTTACATAA
Found at i:32161608 original size:19 final size:19
Alignment explanation
Indices: 32161584--32161620 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
32161574 GTAAATATTT
*
32161584 TTATCATTTTGACTTTTAA
1 TTATCATTTTAACTTTTAA
32161603 TTATCATTTTAACTTTTA
1 TTATCATTTTAACTTTTA
32161621 TCATTTTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.27, C:0.11, G:0.03, T:0.59
Consensus pattern (19 bp):
TTATCATTTTAACTTTTAA
Found at i:32161866 original size:43 final size:43
Alignment explanation
Indices: 32161803--32162026 Score: 220
Period size: 43 Copynumber: 5.2 Consensus size: 43
32161793 TCTGCCAAAA
* ** * * *
32161803 TTAGCGGCGTTTTTTAAAAAAGCGCCGTTAAAGGTC-GTTGTCA
1 TTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCAG-GGTCT
* * *
32161846 TTAGCGGCGTTTGTGGAAAAAATCACCGCTAAAGGTCAAGGTCT
1 TTAGCGGCGTTTGTGG-AAAAAGCGCCGCTAAAGGTCAGGGTCT
* * **
32161890 TTAGCGGCGCTTGTGGAAAGAGTTCCGCTAAAGGTCAGGGTCT
1 TTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCAGGGTCT
* *
32161933 TTAGCGGCGATTGTAGG-AAAAGCGCCGCTAAAGATCAGGGT-T
1 TTAGCGGCGTTTGT-GGAAAAAGCGCCGCTAAAGGTCAGGGTCT
* * * *
32161975 TTAGCGGCGTTTGTCGAACAAGTGCCGCTAAAGGTCATGGTCT
1 TTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCAGGGTCT
*
32162018 TTAGTGGCG
1 TTAGCGGCG
32162027 CAATCCCAAA
Statistics
Matches: 149, Mismatches: 27, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
41 1 0.01
42 34 0.23
43 77 0.52
44 37 0.25
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.27
Consensus pattern (43 bp):
TTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCAGGGTCT
Found at i:32172820 original size:18 final size:17
Alignment explanation
Indices: 32172786--32172835 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 17
32172776 TATTCTAGAA
32172786 AATTTTTAACTTTTTTTA-
1 AATTTTTAA--TTTTTTAG
32172804 ATATTCTTTAATTTTTTAG
1 A-ATT-TTTAATTTTTTAG
32172823 AATTTTTAATTTT
1 AATTTTTAATTTT
32172836 AAAAAATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
17 9 0.31
18 11 0.38
19 4 0.14
20 5 0.17
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (17 bp):
AATTTTTAATTTTTTAG
Found at i:32172873 original size:18 final size:19
Alignment explanation
Indices: 32172850--32172886 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
32172840 AATTTTAAAA
32172850 TATAAAT-TTTTGAATTTT
1 TATAAATATTTTGAATTTT
32172868 TATAAATATTTTGAATTTT
1 TATAAATATTTTGAATTTT
32172887 AAAAATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.59
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:32172887 original size:18 final size:18
Alignment explanation
Indices: 32172850--32172903 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 18
32172840 AATTTTAAAA
32172850 TATAAAT-TTTTGAATTTT
1 TATAAATATTTTGAA-TTT
32172868 TATAAATATTTTGAATTT
1 TATAAATATTTTGAATTT
* *
32172886 TAAAAATTATTTTAAATT
1 TATAAA-TATTTTGAATT
32172904 ATTTTGTAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
18 15 0.47
19 17 0.53
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.56
Consensus pattern (18 bp):
TATAAATATTTTGAATTT
Found at i:32172896 original size:19 final size:18
Alignment explanation
Indices: 32172824--32172903 Score: 60
Period size: 19 Copynumber: 4.6 Consensus size: 18
32172814 ATTTTTTAGA
*
32172824 ATTTTTAATTTTAAAAA-
1 ATTTTGAATTTTAAAAAT
** *
32172841 ATTTT-AA-AATATAAAT
1 ATTTTGAATTTTAAAAAT
*
32172857 -TTTTGAATTTTTATAAAT
1 ATTTTGAA-TTTTAAAAAT
32172875 ATTTTGAATTTTAAAAATT
1 ATTTTGAATTTTAAAAA-T
*
32172894 ATTTTAAATT
1 ATTTTGAATT
32172904 ATTTTGTAGT
Statistics
Matches: 50, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
15 9 0.18
16 4 0.08
17 5 0.10
18 15 0.30
19 17 0.34
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (18 bp):
ATTTTGAATTTTAAAAAT
Found at i:32173003 original size:18 final size:18
Alignment explanation
Indices: 32172980--32173018 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
32172970 ATACTAATTC
*
32172980 ATTATTTGAGTTATTCAA
1 ATTATTTGACTTATTCAA
*
32172998 ATTATTTGACTTATTCTA
1 ATTATTTGACTTATTCAA
32173016 ATT
1 ATT
32173019 GTAAAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.54
Consensus pattern (18 bp):
ATTATTTGACTTATTCAA
Found at i:32176013 original size:40 final size:40
Alignment explanation
Indices: 32175945--32176344 Score: 475
Period size: 40 Copynumber: 10.0 Consensus size: 40
32175935 TATTATATAT
* *
32175945 TGAAATGTATGCGCTTTCAAGCCTTACCTACTGAATCTAC
1 TGAAATGTATGCGCTTTCGAGCCATACCTACTGAATCTAC
* * *
32175985 TGAAATGTATGTGTTTTCGAGCCATACCTATTGAATCTAC
1 TGAAATGTATGCGCTTTCGAGCCATACCTACTGAATCTAC
* * * * *
32176025 TAAAATGTATGTGCTTTCGAGCCATTCCTAATAAATCTAC
1 TGAAATGTATGCGCTTTCGAGCCATACCTACTGAATCTAC
* * *
32176065 AGAAATGTATGCGCTTTTGAGCCATACCTATTGAATCTAC
1 TGAAATGTATGCGCTTTCGAGCCATACCTACTGAATCTAC
* * *
32176105 TGAAATGTATACGCTTTCTAGCCCTACCTACTGAATCTA-
1 TGAAATGTATGCGCTTTCGAGCCATACCTACTGAATCTAC
* * * *
32176144 TCGAAATATATGCACTTTCGAGCCATACGTATTGAATCTAC
1 T-GAAATGTATGCGCTTTCGAGCCATACCTACTGAATCTAC
* * *
32176185 CGAAATGTATGTGCTTTCGAGCCATACCTACTGAATATAC
1 TGAAATGTATGCGCTTTCGAGCCATACCTACTGAATCTAC
* *
32176225 TGAAAAGTATGTGCTTTCGAGCCATACCTACTGAATCTAC
1 TGAAATGTATGCGCTTTCGAGCCATACCTACTGAATCTAC
* * *
32176265 TGAAATGTATGCGCTTTTGAGCCATACCTA-TCGATTCTCC
1 TGAAATGTATGCGCTTTCGAGCCATACCTACT-GAATCTAC
* *
32176305 TGAAA-GTATGCCCTATT-GAGCCATACCTACTGATTCTAC
1 TGAAATGTATGCGCT-TTCGAGCCATACCTACTGAATCTAC
32176344 T
1 T
32176345 AAAAGCTGCT
Statistics
Matches: 308, Mismatches: 47, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
39 30 0.10
40 278 0.90
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.33
Consensus pattern (40 bp):
TGAAATGTATGCGCTTTCGAGCCATACCTACTGAATCTAC
Found at i:32185364 original size:27 final size:26
Alignment explanation
Indices: 32185319--32185402 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 26
32185309 AGTGTGGTCA
* *
32185319 CCAATCTGTTTGGCAAGCTGGGGTTCG
1 CCAATCTG-TTGACGAGCTGGGGTTCG
32185346 CCAATCTGTTCGACGAGCTGGGGTTCG
1 CCAATCTGTT-GACGAGCTGGGGTTCG
* * * *
32185373 CCAGTGTGTTTAGCGAGCTGGGGTTTG
1 CCAATCTGTTGA-CGAGCTGGGGTTCG
32185400 CCA
1 CCA
32185403 GTTGAGTTGC
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
26 3 0.06
27 46 0.94
ACGTcount: A:0.14, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
CCAATCTGTTGACGAGCTGGGGTTCG
Found at i:32185403 original size:27 final size:26
Alignment explanation
Indices: 32185359--32185446 Score: 99
Period size: 25 Copynumber: 3.4 Consensus size: 26
32185349 ATCTGTTCGA
* *
32185359 CGAGCTGGGGTTCGCCAGTGTG-TTTAG
1 CGAGCTGGGGTTTGCCAGT-TGAGTT-G
32185386 CGAGCTGGGGTTTGCCAGTTGAGTTG
1 CGAGCTGGGGTTTGCCAGTTGAGTTG
*
32185412 CGAACT-GGGTTTGCCAGTTGAGTTG
1 CGAGCTGGGGTTTGCCAGTTGAGTTG
* *
32185437 TGAACTGGGG
1 CGAGCTGGGG
32185447 GTTCGCATGT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
25 24 0.44
26 11 0.20
27 20 0.36
ACGTcount: A:0.14, C:0.16, G:0.41, T:0.30
Consensus pattern (26 bp):
CGAGCTGGGGTTTGCCAGTTGAGTTG
Found at i:32185583 original size:19 final size:18
Alignment explanation
Indices: 32185541--32185583 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
32185531 TTCTAAACTG
32185541 ACTAGGGTTCCTAAGTCT
1 ACTAGGGTTCCTAAGTCT
*
32185559 AGTAGGGTATCCTAAGATC-
1 ACTAGGGT-TCCTAAG-TCT
32185578 ACTAGG
1 ACTAGG
32185584 TCACTTAGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 7 0.33
19 12 0.57
20 2 0.10
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (18 bp):
ACTAGGGTTCCTAAGTCT
Done.