Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60343961
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 596159 characters in sequence are not A, C, G, or T
File 105 of 204
Found at i:32513791 original size:16 final size:16
Alignment explanation
Indices: 32513772--32513839 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
32513762 GATTTGCTAT
* *
32513772 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
32513788 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
32513804 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
32513820 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
32513836 TACA
1 TACA
32513840 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:32515386 original size:72 final size:74
Alignment explanation
Indices: 32515294--32515466 Score: 196
Period size: 72 Copynumber: 2.4 Consensus size: 74
32515284 AAAATTACAT
* * * * *
32515294 ATAAACAACTATTGATAAAACTAATTTAGT-A-AAAAATAAGTAGAATATAAATTCAATATCTAA
1 ATAAATAACTTTTAATAAAACTAATTTAGTCACAAAAATAAGTAGAACATAAATTCAATATCCAA
*
32515357 AGACCAAAC
66 AAACCAAAC
* *
32515366 ATAAATAACTTTTAATAAAACT-A--GAGTCCACATAAATAAGTAGAACATAAATTCAATATCCA
1 ATAAATAACTTTTAATAAAACTAATTTAGT-CACAAAAATAAGTAGAACATAAATTCAATATCCA
32515428 AAAACCAAAC
65 AAAACCAAAC
* *
32515438 ATAAATAAC-TATAGATAAAACTAGTTTAG
1 ATAAATAACTTTTA-ATAAAACTAATTTAG
32515467 CATTGTTGTT
Statistics
Matches: 83, Mismatches: 11, Indels: 11
0.79 0.10 0.10
Matches are distributed among these distances:
69 3 0.04
71 5 0.06
72 73 0.88
75 2 0.02
ACGTcount: A:0.54, C:0.13, G:0.07, T:0.26
Consensus pattern (74 bp):
ATAAATAACTTTTAATAAAACTAATTTAGTCACAAAAATAAGTAGAACATAAATTCAATATCCAA
AAACCAAAC
Found at i:32515906 original size:18 final size:18
Alignment explanation
Indices: 32515883--32515930 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
32515873 TCCATCAATT
* *
32515883 TGAACATCATTTGAGATG
1 TGAACATCATTTAAAATG
32515901 TGAACATCATTTAAAATG
1 TGAACATCATTTAAAATG
32515919 TGAACATCATTT
1 TGAACATCATTT
32515931 CTCATATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (18 bp):
TGAACATCATTTAAAATG
Found at i:32518469 original size:11 final size:11
Alignment explanation
Indices: 32518453--32518487 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
32518443 AAACAAAAGC
32518453 ACCAGCAGAGA
1 ACCAGCAGAGA
32518464 ACCAGCAGAGA
1 ACCAGCAGAGA
*
32518475 ACCAACAGAGA
1 ACCAGCAGAGA
32518486 AC
1 AC
32518488 AAAATTTGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.49, C:0.29, G:0.23, T:0.00
Consensus pattern (11 bp):
ACCAGCAGAGA
Found at i:32518558 original size:14 final size:14
Alignment explanation
Indices: 32518541--32518570 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
32518531 AGCAGACAAC
32518541 AACCAGCAAAGAAG
1 AACCAGCAAAGAAG
*
32518555 AACCAGCAGAGAAG
1 AACCAGCAAAGAAG
32518569 AA
1 AA
32518571 AAATGTGTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.57, C:0.20, G:0.23, T:0.00
Consensus pattern (14 bp):
AACCAGCAAAGAAG
Found at i:32521415 original size:20 final size:20
Alignment explanation
Indices: 32521332--32521432 Score: 78
Period size: 20 Copynumber: 5.0 Consensus size: 20
32521322 TACACTACAC
* *
32521332 CAGAGGTATCAAAGATGCGTAA
1 CAGAGGCATCAAAG-TGC-AAA
* *
32521354 CAGAGGCATCAAAATGCAGA
1 CAGAGGCATCAAAGTGCAAA
* * *
32521374 CATAGGTA-CAAATGTCCAAA
1 CAGAGGCATCAAA-GTGCAAA
*
32521394 CAGAGGCACCAAAGTGCAAA
1 CAGAGGCATCAAAGTGCAAA
* *
32521414 CAGAGACATCGAAGTGCAA
1 CAGAGGCATCAAAGTGCAA
32521433 TCCCATACAA
Statistics
Matches: 62, Mismatches: 15, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
19 4 0.06
20 39 0.63
21 7 0.11
22 12 0.19
ACGTcount: A:0.44, C:0.20, G:0.24, T:0.13
Consensus pattern (20 bp):
CAGAGGCATCAAAGTGCAAA
Found at i:32526143 original size:16 final size:16
Alignment explanation
Indices: 32526076--32526143 Score: 75
Period size: 16 Copynumber: 4.2 Consensus size: 16
32526066 TGGTTCACTA
32526076 TAATGGAATA-AGGCTG
1 TAATGGAATAGA-GCTG
* *
32526092 TAATTGAATAGGGCTG
1 TAATGGAATAGAGCTG
* *
32526108 TAATTGAATAGAGCTA
1 TAATGGAATAGAGCTG
*
32526124 TAATGGAATAGAGTTG
1 TAATGGAATAGAGCTG
32526140 TAAT
1 TAAT
32526144 CAGCAATTCA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
16 44 1.00
ACGTcount: A:0.38, C:0.04, G:0.26, T:0.31
Consensus pattern (16 bp):
TAATGGAATAGAGCTG
Found at i:32526181 original size:46 final size:44
Alignment explanation
Indices: 32526125--32526218 Score: 116
Period size: 44 Copynumber: 2.1 Consensus size: 44
32526115 ATAGAGCTAT
**
32526125 AATGGAATAGAGTTGTAATCAGCAATTCAATTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAAT-AG-AATTCAATTGTTTGGTTGAATGG
* ** *
32526171 AATGGAATAGAACTGTAATAGTATTCTTTTGTTTGGTTGAATTG
1 AATGGAATAGAACTGTAATAGAATTCAATTGTTTGGTTGAATGG
32526215 AATG
1 AATG
32526219 ATGTTGTAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
44 23 0.55
45 2 0.05
46 17 0.40
ACGTcount: A:0.32, C:0.05, G:0.24, T:0.38
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAGAATTCAATTGTTTGGTTGAATGG
Found at i:32538966 original size:54 final size:53
Alignment explanation
Indices: 32538818--32538967 Score: 140
Period size: 54 Copynumber: 2.8 Consensus size: 53
32538808 CGACCGCGTC
* * * *
32538818 CTAGCCCGTGTAACTCACTGAGTTAGGT-CACACGATCGTGTCGCAGGTCATGTG
1 CTAGACCGTGTAACTCTCTGACTT--GTACACACGATCGTGTCGCAGGCCATGTG
* * * * * *
32538872 CCAGATCGTGTAACACTCTAACTTGTGACACACGACCGTGTCGCAGGCCGTGTG
1 CTAGACCGTGTAACTCTCTGACTTGT-ACACACGATCGTGTCGCAGGCCATGTG
* * *
32538926 CTAGGCCGTGTAACTCTCTGACTTGATACACATGGTCGTGTC
1 CTAGACCGTGTAACTCTCTGACTTG-TACACACGATCGTGTC
32538968 TTATGCCGTG
Statistics
Matches: 75, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
52 2 0.03
54 72 0.96
55 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.26, T:0.26
Consensus pattern (53 bp):
CTAGACCGTGTAACTCTCTGACTTGTACACACGATCGTGTCGCAGGCCATGTG
Found at i:32549170 original size:3 final size:3
Alignment explanation
Indices: 32549162--32549190 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
32549152 ATTAAATATT
32549162 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
32549191 GATCGAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:32549879 original size:13 final size:13
Alignment explanation
Indices: 32549861--32549888 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
32549851 TTCAGAACCT
32549861 TAGTATATTGACA
1 TAGTATATTGACA
32549874 TAGTATATTGACA
1 TAGTATATTGACA
32549887 TA
1 TA
32549889 CCAAGAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.39
Consensus pattern (13 bp):
TAGTATATTGACA
Found at i:32551115 original size:4 final size:4
Alignment explanation
Indices: 32551086--32551124 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
32551076 TTTCCCTAAT
* * *
32551086 TTCA ATCA TTCA TTTA TTCA TCCA TTCA TTCA TTCA TTC
1 TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTC
32551125 GCTTATTTGT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.49
Consensus pattern (4 bp):
TTCA
Found at i:32558951 original size:16 final size:16
Alignment explanation
Indices: 32558932--32558991 Score: 54
Period size: 16 Copynumber: 3.8 Consensus size: 16
32558922 ACACTAAAGA
*
32558932 AAAAAGAAGAAAGA-AG
1 AAAAAGAACAAA-ACAG
*
32558948 AAAAAAAACAAAACAG
1 AAAAAGAACAAAACAG
*
32558964 AAAAAGAAACAAAA-AA
1 AAAAAG-AACAAAACAG
32558980 AAAAAGAA-AAAA
1 AAAAAGAACAAAA
32558992 TAGAGAGAGA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
14 4 0.11
15 3 0.08
16 24 0.63
17 7 0.18
ACGTcount: A:0.83, C:0.05, G:0.12, T:0.00
Consensus pattern (16 bp):
AAAAAGAACAAAACAG
Found at i:32558977 original size:22 final size:22
Alignment explanation
Indices: 32558931--32558990 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
32558921 AACACTAAAG
*
32558931 AAAAAAGAAGAAAGAAGAAAAAA
1 AAAAAAAAAGAAA-AAGAAAAAA
* * *
32558954 AACAAAACAGAAAAAGAAACAA
1 AAAAAAAAAGAAAAAGAAAAAA
32558976 AAAAAAAAAGAAAAA
1 AAAAAAAAAGAAAAA
32558991 ATAGAGAGAG
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
22 21 0.68
23 10 0.32
ACGTcount: A:0.83, C:0.05, G:0.12, T:0.00
Consensus pattern (22 bp):
AAAAAAAAAGAAAAAGAAAAAA
Found at i:32559445 original size:42 final size:41
Alignment explanation
Indices: 32559398--32559524 Score: 173
Period size: 42 Copynumber: 3.0 Consensus size: 41
32559388 AGAAAAGCAC
*
32559398 TCATTGCATTTAGAGGCCCAGGTGTGGAAGTCCATTTACTTT
1 TCATTGCATTTAGAGGCCCAGG-GTGGAGGTCCATTTACTTT
* *
32559440 TCATTGCATTTAGAGGCCCAAGGGTAGAGGACCATTTACTTT
1 TCATTGCATTTAGAGGCCC-AGGGTGGAGGTCCATTTACTTT
* * *
32559482 TCATTGCATTTAGAGGCTCAGGCATGGAGGTCCATTTATTTT
1 TCATTGCATTTAGAGGCCCAGG-GTGGAGGTCCATTTACTTT
32559524 T
1 T
32559525 TCCTTGTATA
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
41 3 0.04
42 69 0.92
43 3 0.04
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (41 bp):
TCATTGCATTTAGAGGCCCAGGGTGGAGGTCCATTTACTTT
Found at i:32559751 original size:3 final size:3
Alignment explanation
Indices: 32559743--32559806 Score: 128
Period size: 3 Copynumber: 21.3 Consensus size: 3
32559733 ATGTTGAGTA
32559743 ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT
1 ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT
32559791 ACT ACT ACT ACT ACT A
1 ACT ACT ACT ACT ACT A
32559807 TTAAATATTA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 61 1.00
ACGTcount: A:0.34, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
ACT
Found at i:32560414 original size:149 final size:148
Alignment explanation
Indices: 32560166--32560471 Score: 454
Period size: 149 Copynumber: 2.0 Consensus size: 148
32560156 GGAAAAGTTT
* * *
32560166 TGATTTTTTTTAAAAAAAGAAAGTTTAGATTTTTAAAAAGAAAAATATGATTTTTAGTTATTTTA
1 TGATTTTTTTTAAAAAAAGAAAGTTTAAATTTTTAAAAAAAAAAATATGATTTTTAGTCATTTTA
*
32560231 AAGGAAAAGTTCAAATTTTTAAAACAAAGTTTTGATCTTTTTCAACTATTTCAAAATAAAACTTT
66 AAAGAAAAGTTCAAATTTTTAAAACAAAGTTTTGATCTTTTTCAACTATTTCAAAATAAAACTTT
*
32560296 GATTATT-AAGAAAAATAG
131 GATT-TTAAAAAAAAATAG
*
32560314 TGATTTTTTTTAAAAAAGAGAAAGTTTAAATTTTTAAAAATAAAAAATAT-TTTTTTAGTCATTT
1 TGATTTTTTTTAAAAAA-AGAAAGTTTAAATTTTTAAAAA-AAAAAATATGATTTTTAGTCATTT
* * * * *
32560378 TAAAAGAAAAGTTTAATTTTTTAAAATAAAGTTTTGATCTTTTTCAACTATTTCCAAATAAAGCT
64 TAAAAGAAAAGTTCAAATTTTTAAAACAAAGTTTTGATCTTTTTCAACTATTTCAAAATAAAACT
32560443 TTGATTTTCAAAAAAAAAATAG
129 TTGATTTT--AAAAAAAAATAG
32560465 TGATTTT
1 TGATTTT
32560472 AAAAAAAAAA
Statistics
Matches: 142, Mismatches: 11, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
148 19 0.13
149 98 0.69
150 8 0.06
151 17 0.12
ACGTcount: A:0.44, C:0.05, G:0.09, T:0.42
Consensus pattern (148 bp):
TGATTTTTTTTAAAAAAAGAAAGTTTAAATTTTTAAAAAAAAAAATATGATTTTTAGTCATTTTA
AAAGAAAAGTTCAAATTTTTAAAACAAAGTTTTGATCTTTTTCAACTATTTCAAAATAAAACTTT
GATTTTAAAAAAAAATAG
Found at i:32560518 original size:149 final size:149
Alignment explanation
Indices: 32560177--32560518 Score: 390
Period size: 149 Copynumber: 2.3 Consensus size: 149
32560167 GATTTTTTTT
* * * * * *
32560177 AAAAAA-AGAAAGTTTAGATTTTTAAAAA-GAAAAATATGATTTTTAGTTATTTTAAAGGAAAAG
1 AAAAAAGAGAAACTTTAAATTTTGAAAAATAAAAAATAT-ATTTTTAGTCATTTTAAAAGAAAAG
32560240 TTCAAATTTTTAAAACAAAGTTTTGATCTTTTTCAACTATTTCAAAATAAAACTTTGATTATTAA
65 TTCAAATTTTTAAAACAAAGTTTTGATCTTTTTCAACTATTTCAAAATAAAACTTTGATTATTAA
* ****
32560305 GAAAAATAGTGATTTTTTTT
130 AAAAAATAGTGATTTTAAAA
* * *
32560325 AAAAAAGAGAAAGTTTAAATTTTTAAAAATAAAAAATATTTTTTTAGTCATTTTAAAAGAAAAGT
1 AAAAAAGAGAAACTTTAAATTTTGAAAAATAAAAAATATATTTTTAGTCATTTTAAAAGAAAAGT
* * * * *
32560390 TTAATTTTTTAAAATAAAGTTTTGATCTTTTTCAACTATTTCCAAATAAAGCTTTGATT-TTCAA
66 TCAAATTTTTAAAACAAAGTTTTGATCTTTTTCAACTATTTCAAAATAAAACTTTGATTATT---
32560454 AAAAAAAATAGTGATTTTAAAA
128 AAAAAAAATAGTGATTTTAAAA
* * * *
32560476 AAAAAA-AGAAAACTTT-GATTTTGCAAAA-AATATATATATTTTT
1 AAAAAAGAG-AAACTTTAAATTTTGAAAAATAAAAAATATATTTTT
32560519 GGCCACCGTA
Statistics
Matches: 166, Mismatches: 22, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
148 8 0.05
149 110 0.66
150 19 0.11
151 29 0.17
ACGTcount: A:0.46, C:0.05, G:0.09, T:0.40
Consensus pattern (149 bp):
AAAAAAGAGAAACTTTAAATTTTGAAAAATAAAAAATATATTTTTAGTCATTTTAAAAGAAAAGT
TCAAATTTTTAAAACAAAGTTTTGATCTTTTTCAACTATTTCAAAATAAAACTTTGATTATTAAA
AAAAATAGTGATTTTAAAA
Found at i:32564769 original size:23 final size:22
Alignment explanation
Indices: 32564743--32564820 Score: 111
Period size: 23 Copynumber: 3.4 Consensus size: 22
32564733 ACATATGTTC
*
32564743 CCTCCGAACACAACCAAATATAG
1 CCTCC-AACACAACCAAATATAA
*
32564766 CCTCTCAACACAACCAAATATAC
1 CCTC-CAACACAACCAAATATAA
32564789 CCTCCAAGCACAACCAAATATAA
1 CCTCCAA-CACAACCAAATATAA
32564812 CCTCCAACA
1 CCTCCAACA
32564821 TATCCACTTA
Statistics
Matches: 51, Mismatches: 2, Indels: 5
0.88 0.03 0.09
Matches are distributed among these distances:
22 5 0.10
23 45 0.88
24 1 0.02
ACGTcount: A:0.44, C:0.38, G:0.04, T:0.14
Consensus pattern (22 bp):
CCTCCAACACAACCAAATATAA
Found at i:32571825 original size:18 final size:16
Alignment explanation
Indices: 32571783--32571825 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 16
32571773 TTAGCATATT
32571783 TTTTTATTCACAATGC
1 TTTTTATTCACAATGC
* *
32571799 CTTTAATTCTAACAATGC
1 TTTTTATTC--ACAATGC
32571817 TTTTTATTC
1 TTTTTATTC
32571826 GCTCGCTTTC
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
16 7 0.33
18 14 0.67
ACGTcount: A:0.26, C:0.19, G:0.05, T:0.51
Consensus pattern (16 bp):
TTTTTATTCACAATGC
Found at i:32575185 original size:22 final size:20
Alignment explanation
Indices: 32575147--32575191 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 20
32575137 TATATTTTTA
32575147 TTTCTATAAAATTTTGAAAT
1 TTTCTATAAAATTTTGAAAT
32575167 TTTCTAATAAATATTTTGAAAT
1 TTTCT-ATAAA-ATTTTGAAAT
32575189 TTT
1 TTT
32575192 GAAGATTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 5 0.22
21 5 0.22
22 13 0.57
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.53
Consensus pattern (20 bp):
TTTCTATAAAATTTTGAAAT
Found at i:32576677 original size:41 final size:40
Alignment explanation
Indices: 32576551--32576683 Score: 130
Period size: 37 Copynumber: 3.4 Consensus size: 40
32576541 ACCAGTTTGG
*
32576551 CACCCAGTGCCTCATCAAAT-AATTCAAAGTAGTAAATTGA
1 CACCCAGTGCCTCATCGAATAAATTCAAAGTA-TAAATTGA
* ** * * *
32576591 CACCCAGTGTCTCATCGGTTAAA-CCGAAG--TAAATTGG
1 CACCCAGTGCCTCATCGAATAAATTCAAAGTATAAATTGA
*
32576628 CACCCAGTGCCTCATTGAATAAATTCAAAGTAATAAATTGA
1 CACCCAGTGCCTCATCGAATAAATTCAAAGT-ATAAATTGA
* *
32576669 CACACAGTGTCTCAT
1 CACCCAGTGCCTCAT
32576684 TGACTCGAAG
Statistics
Matches: 72, Mismatches: 16, Indels: 9
0.74 0.16 0.09
Matches are distributed among these distances:
37 26 0.36
38 4 0.06
40 20 0.28
41 22 0.31
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (40 bp):
CACCCAGTGCCTCATCGAATAAATTCAAAGTATAAATTGA
Found at i:32577061 original size:20 final size:20
Alignment explanation
Indices: 32577019--32577059 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
32577009 TATAACACAA
*
32577019 TTCAATTTCATATTGAATAT
1 TTCAATTTCATATTCAATAT
*
32577039 TTCAATTT-TTATTCAATAT
1 TTCAATTTCATATTCAATAT
32577058 TT
1 TT
32577060 TCCTAAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.56
Consensus pattern (20 bp):
TTCAATTTCATATTCAATAT
Found at i:32577532 original size:21 final size:21
Alignment explanation
Indices: 32577472--32577532 Score: 50
Period size: 26 Copynumber: 2.7 Consensus size: 21
32577462 GTTTTCTTTC
**
32577472 TTCTTTCTCTTTTTATTTTCT
1 TTCTTTCTCTTTTTAGCTTCT
*
32577493 TTCCTTTCTGTTTCATTTTAGCTTCT
1 TT-CTTTC----TCTTTTTAGCTTCT
32577519 TTCTTTCTCTTTTT
1 TTCTTTCTCTTTTT
32577533 CTTATTTTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 10
0.69 0.09 0.22
Matches are distributed among these distances:
21 8 0.26
22 5 0.16
25 5 0.16
26 13 0.42
ACGTcount: A:0.05, C:0.21, G:0.03, T:0.70
Consensus pattern (21 bp):
TTCTTTCTCTTTTTAGCTTCT
Found at i:32584088 original size:20 final size:19
Alignment explanation
Indices: 32584065--32584105 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
32584055 TATAACACAA
*
32584065 TTCAATTTCATATTTAATAT
1 TTCAATTT-ATACTTAATAT
*
32584085 TTCAATTTTTACTTAATAT
1 TTCAATTTATACTTAATAT
32584104 TT
1 TT
32584106 TCCTAAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.59
Consensus pattern (19 bp):
TTCAATTTATACTTAATAT
Found at i:32586396 original size:20 final size:19
Alignment explanation
Indices: 32586352--32586398 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
32586342 TTGAATAACA
*
32586352 TTGAATTTTAAAATTTTTT
1 TTGATTTTTAAAATTTTTT
*
32586371 AT-ATTTTTAAAATATTTTT
1 TTGATTTTTAAAAT-TTTTT
32586390 TTGATTTTT
1 TTGATTTTT
32586399 TTATTTTAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
18 10 0.43
19 7 0.30
20 6 0.26
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (19 bp):
TTGATTTTTAAAATTTTTT
Found at i:32586443 original size:16 final size:16
Alignment explanation
Indices: 32586395--32586443 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
32586385 TTTTTTTGAT
**
32586395 TTTTTTATTTTAAGGA
1 TTTTTTATTTTAATAA
* *
32586411 GTTTTTATTTTTCATAA
1 TTTTTTA-TTTTAATAA
32586428 TTTTTTATTTTAATAA
1 TTTTTTATTTTAATAA
32586444 ACTATAATTT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
16 14 0.54
17 12 0.46
ACGTcount: A:0.27, C:0.02, G:0.06, T:0.65
Consensus pattern (16 bp):
TTTTTTATTTTAATAA
Found at i:32586640 original size:24 final size:25
Alignment explanation
Indices: 32586606--32586657 Score: 79
Period size: 26 Copynumber: 2.1 Consensus size: 25
32586596 AAGTAGATAC
*
32586606 TAAATTGGAC-AAAAAAAGTTTATG
1 TAAATTAGACAAAAAAAAGTTTATG
32586630 TAAATTAGACAAAAAAAAAGTTTATG
1 TAAATTAGAC-AAAAAAAAGTTTATG
32586656 TA
1 TA
32586658 CCAAAACAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 9 0.36
26 16 0.64
ACGTcount: A:0.54, C:0.04, G:0.13, T:0.29
Consensus pattern (25 bp):
TAAATTAGACAAAAAAAAGTTTATG
Found at i:32587888 original size:8 final size:9
Alignment explanation
Indices: 32587794--32587896 Score: 54
Period size: 8 Copynumber: 11.4 Consensus size: 9
32587784 TAAAAATAAT
32587794 TTTTAAAAA
1 TTTTAAAAA
*
32587803 -TTCAAAACA
1 TTTTAAAA-A
*
32587812 TTGATAAAAA
1 TT-TTAAAAA
*
32587822 -TTTCAAAA
1 TTTTAAAAA
32587830 -TTT-AAAA
1 TTTTAAAAA
32587837 TTTTAAAAAA
1 TTTT-AAAAA
* *
32587847 TTCTAAATA
1 TTTTAAAAA
*
32587856 TTCTAAAAAA
1 TT-TTAAAAA
*
32587866 TATATAAAAA
1 T-TTTAAAAA
*
32587876 ATTT-AAAA
1 TTTTAAAAA
32587884 TTTTAAAAA
1 TTTTAAAAA
32587893 TTTT
1 TTTT
32587897 CTAAAATAAT
Statistics
Matches: 70, Mismatches: 15, Indels: 18
0.68 0.15 0.17
Matches are distributed among these distances:
7 4 0.06
8 24 0.34
9 18 0.26
10 19 0.27
11 5 0.07
ACGTcount: A:0.55, C:0.05, G:0.01, T:0.39
Consensus pattern (9 bp):
TTTTAAAAA
Found at i:32594515 original size:19 final size:20
Alignment explanation
Indices: 32594487--32594524 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
32594477 TATTTAATTT
32594487 ATTTTAAAC-AATAAAATAG
1 ATTTTAAACAAATAAAATAG
*
32594506 ATTTTCAACAAATAAAATA
1 ATTTTAAACAAATAAAATA
32594525 TTCCAACCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.58, C:0.08, G:0.03, T:0.32
Consensus pattern (20 bp):
ATTTTAAACAAATAAAATAG
Found at i:32598484 original size:30 final size:30
Alignment explanation
Indices: 32598450--32598511 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
32598440 CAACTTAACA
32598450 AACAAATGCCTCTAAAATAATAACAAAATT
1 AACAAATGCCTCTAAAATAATAACAAAATT
* * *
32598480 AACAAATGCTTTTAAATTAATAACAAAATT
1 AACAAATGCCTCTAAAATAATAACAAAATT
32598510 AA
1 AA
32598512 TAGTAAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.56, C:0.13, G:0.03, T:0.27
Consensus pattern (30 bp):
AACAAATGCCTCTAAAATAATAACAAAATT
Found at i:32598569 original size:22 final size:22
Alignment explanation
Indices: 32598543--32598601 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
32598533 ATATCCAAAC
*
32598543 AATAACAATAAAATAGTAGCAA
1 AATAAAAATAAAATAGTAGCAA
* * *
32598565 CATAATAATAAAATGGTAGCAA
1 AATAAAAATAAAATAGTAGCAA
*
32598587 AATAAAAAGAAAATA
1 AATAAAAATAAAATA
32598602 ACATTCAAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.64, C:0.07, G:0.10, T:0.19
Consensus pattern (22 bp):
AATAAAAATAAAATAGTAGCAA
Found at i:32602170 original size:102 final size:96
Alignment explanation
Indices: 32602054--32602252 Score: 299
Period size: 96 Copynumber: 2.0 Consensus size: 96
32602044 ATCCCAACAA
**
32602054 AAAAATATATGAGATTTGTTTTCAAAACAGGAAGGTTAAATTATACAAAAAAAAAATAAAGTTAC
1 AAAAATATATGAGATTTGTTTTCAAAACAACAAGGTTAAATTAT----AAAAAAAA-AAA-TTAC
*
32602119 TAAATTCTTAAAAACAACAAAGCTAAATTCTAAATAT
60 TAAATTATTAAAAACAACAAAGCTAAATTCTAAATAT
* *
32602156 AAAAATGTATGAGATTTGTTTTCAAAACAACAAGGTTAAATTGTAAAAAAAAAAATTACTAAATT
1 AAAAATATATGAGATTTGTTTTCAAAACAACAAGGTTAAATTATAAAAAAAAAAATTACTAAATT
32602221 ATTAAAAACAACAAAGCTAAATTCTAAATAT
66 ATTAAAAACAACAAAGCTAAATTCTAAATAT
32602252 A
1 A
32602253 CGGAGACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
96 41 0.45
97 3 0.03
98 8 0.09
102 40 0.43
ACGTcount: A:0.54, C:0.09, G:0.09, T:0.29
Consensus pattern (96 bp):
AAAAATATATGAGATTTGTTTTCAAAACAACAAGGTTAAATTATAAAAAAAAAAATTACTAAATT
ATTAAAAACAACAAAGCTAAATTCTAAATAT
Found at i:32608515 original size:46 final size:46
Alignment explanation
Indices: 32608423--32608743 Score: 448
Period size: 46 Copynumber: 7.0 Consensus size: 46
32608413 GAACAGCAGT
* * * *
32608423 AACAACATTCGGACATCATTGATTTG-TACAAAAATGGATAGCATTTA
1 AACAACATTCGGACAACA-TAATATGCTA-AAAAATGGACAGCATTTA
*
32608470 AACAACATTCGGACAACATAATATGCTAAAAAATGGACAACATTTA
1 AACAACATTCGGACAACATAATATGCTAAAAAATGGACAGCATTTA
*
32608516 AACAACATTAGGACAACATAATATGCTAAAAAATGGACAGCATTTA
1 AACAACATTCGGACAACATAATATGCTAAAAAATGGACAGCATTTA
* ** * *
32608562 AACAACATT-AGACAGTATAATATCCTCAAAAATGGACAGCATTTA
1 AACAACATTCGGACAACATAATATGCTAAAAAATGGACAGCATTTA
* *
32608607 AACAACATTCGGACATCATAATATGCTAAAAAATGGACAACATTTA
1 AACAACATTCGGACAACATAATATGCTAAAAAATGGACAGCATTTA
*
32608653 AACAACATTCGGACAACATAATATGCTCAAAAATGGACAGCATTTA
1 AACAACATTCGGACAACATAATATGCTAAAAAATGGACAGCATTTA
* * * *
32608699 AACAACATTCAGACAACATAATATACTAAAAAATAGACAACATTT
1 AACAACATTCGGACAACATAATATGCTAAAAAATGGACAGCATTT
32608744 TGTTATCACA
Statistics
Matches: 246, Mismatches: 26, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
45 40 0.16
46 187 0.76
47 19 0.08
ACGTcount: A:0.48, C:0.17, G:0.11, T:0.24
Consensus pattern (46 bp):
AACAACATTCGGACAACATAATATGCTAAAAAATGGACAGCATTTA
Found at i:32608661 original size:137 final size:138
Alignment explanation
Indices: 32608451--32608743 Score: 489
Period size: 137 Copynumber: 2.1 Consensus size: 138
32608441 TTGATTTGTA
*
32608451 CAAAAATGGATAGCATTTAAACAACATTCGGACAACATAATATGCTAAAAAATGGACAACATTTA
1 CAAAAATGGACAGCATTTAAACAACATTCGGACAACATAATATGCTAAAAAATGGACAACATTTA
**
32608516 AACAACATTAGGACAACATAATATGCTAAAAAATGGACAGCATTTAAACAACATT-AGACAGTAT
66 AACAACATTAGGACAACATAATATGCTAAAAAATGGACAGCATTTAAACAACATTCAGACAACAT
*
32608580 AATATCCT
131 AATATACT
*
32608588 CAAAAATGGACAGCATTTAAACAACATTCGGACATCATAATATGCTAAAAAATGGACAACATTTA
1 CAAAAATGGACAGCATTTAAACAACATTCGGACAACATAATATGCTAAAAAATGGACAACATTTA
* *
32608653 AACAACATTCGGACAACATAATATGCTCAAAAATGGACAGCATTTAAACAACATTCAGACAACAT
66 AACAACATTAGGACAACATAATATGCTAAAAAATGGACAGCATTTAAACAACATTCAGACAACAT
32608718 AATATACT
131 AATATACT
* * *
32608726 AAAAAATAGACAACATTT
1 CAAAAATGGACAGCATTT
32608744 TGTTATCACA
Statistics
Matches: 145, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
137 116 0.80
138 29 0.20
ACGTcount: A:0.49, C:0.17, G:0.11, T:0.23
Consensus pattern (138 bp):
CAAAAATGGACAGCATTTAAACAACATTCGGACAACATAATATGCTAAAAAATGGACAACATTTA
AACAACATTAGGACAACATAATATGCTAAAAAATGGACAGCATTTAAACAACATTCAGACAACAT
AATATACT
Found at i:32616421 original size:25 final size:25
Alignment explanation
Indices: 32616392--32616462 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 25
32616382 CGCTCTTTCT
32616392 GATTATTAGCACATCAATGCTCTCA
1 GATTATTAGCACATCAATGCTCTCA
* * * *
32616417 GATTATTAGCACGTTAGTGCTCTCC
1 GATTATTAGCACATCAATGCTCTCA
*
32616442 G---ATTAGCACATCTATGCTCTC
1 GATTATTAGCACATCAATGCTCTC
32616463 TGTATAGCAC
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
22 16 0.42
25 22 0.58
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.34
Consensus pattern (25 bp):
GATTATTAGCACATCAATGCTCTCA
Found at i:32616449 original size:22 final size:22
Alignment explanation
Indices: 32616421--32616484 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
32616411 CTCTCAGATT
*
32616421 ATTAGCACGTTAGTGCTCTCCG
1 ATTAGCACATTAGTGCTCTCCG
*
32616443 ATTAGCACATCTA-TGCTCTCTG
1 ATTAGCACAT-TAGTGCTCTCCG
* *
32616465 -TATAGCACTTTAGTGTTCTC
1 AT-TAGCACATTAGTGCTCTC
32616485 TATTCATTAG
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
21 3 0.09
22 30 0.86
23 2 0.06
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.38
Consensus pattern (22 bp):
ATTAGCACATTAGTGCTCTCCG
Found at i:32625087 original size:21 final size:21
Alignment explanation
Indices: 32625061--32625119 Score: 75
Period size: 20 Copynumber: 2.9 Consensus size: 21
32625051 AACGCTATAT
32625061 AGAGGCACCGTAGTGCAAAAA
1 AGAGGCACCGTAGTGCAAAAA
* *
32625082 AGAGGCACTGTAGTGC-AAAT
1 AGAGGCACCGTAGTGCAAAAA
**
32625102 AGAGGCACCAAAGTGCAA
1 AGAGGCACCGTAGTGCAA
32625120 TCCCGTACAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 16 0.50
21 16 0.50
ACGTcount: A:0.41, C:0.19, G:0.29, T:0.12
Consensus pattern (21 bp):
AGAGGCACCGTAGTGCAAAAA
Found at i:32625107 original size:20 final size:21
Alignment explanation
Indices: 32625059--32625119 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 21
32625049 AAAACGCTAT
32625059 ATAGAGGCACCGTAGTGCAAA
1 ATAGAGGCACCGTAGTGCAAA
* *
32625080 AAAGAGGCACTGTAGTGC-AA
1 ATAGAGGCACCGTAGTGCAAA
**
32625100 ATAGAGGCACCAAAGTGCAA
1 ATAGAGGCACCGTAGTGCAA
32625120 TCCCGTACAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
20 16 0.48
21 17 0.52
ACGTcount: A:0.41, C:0.18, G:0.28, T:0.13
Consensus pattern (21 bp):
ATAGAGGCACCGTAGTGCAAA
Found at i:32636245 original size:41 final size:41
Alignment explanation
Indices: 32636188--32636265 Score: 120
Period size: 41 Copynumber: 1.9 Consensus size: 41
32636178 GTTTAAACGT
*
32636188 TCACAAAAGATAAGTGTAGGTAAAATATCCAAAATATCGAG
1 TCACAAAAGATAAGTGTAGCTAAAATATCCAAAATATCGAG
* * *
32636229 TCACAAAAGATGAGTGTAGCTAAAATATTCGAAATAT
1 TCACAAAAGATAAGTGTAGCTAAAATATCCAAAATAT
32636266 GAGAATCTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.47, C:0.12, G:0.17, T:0.24
Consensus pattern (41 bp):
TCACAAAAGATAAGTGTAGCTAAAATATCCAAAATATCGAG
Found at i:32638274 original size:22 final size:22
Alignment explanation
Indices: 32638225--32638285 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
32638215 TTCTTTCTCT
*
32638225 TCAAATTTCTAATTTTAAGTTA
1 TCAAATTTCTAATTTTAAGTGA
* *
32638247 TAAAATTTCTAATTTTAGAG-GG
1 TCAAATTTCTAATTTTA-AGTGA
*
32638269 TCAAATTT-GAATTTTAA
1 TCAAATTTCTAATTTTAA
32638286 ATTTGAGGGC
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
20 1 0.03
21 7 0.21
22 23 0.70
23 2 0.06
ACGTcount: A:0.38, C:0.07, G:0.10, T:0.46
Consensus pattern (22 bp):
TCAAATTTCTAATTTTAAGTGA
Found at i:32638780 original size:20 final size:21
Alignment explanation
Indices: 32638734--32638781 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
32638724 CCATTAAAAG
*
32638734 TTAATTAGCATTTAGATTAGT
1 TTAATTAGCATTTAGATTACT
*
32638755 TAAATTAG-ATTT-GATTAACT
1 TTAATTAGCATTTAGATT-ACT
32638775 TTAATTA
1 TTAATTA
32638782 AACCAAATTG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 4 0.17
20 12 0.52
21 7 0.30
ACGTcount: A:0.38, C:0.04, G:0.10, T:0.48
Consensus pattern (21 bp):
TTAATTAGCATTTAGATTACT
Found at i:32640517 original size:21 final size:21
Alignment explanation
Indices: 32640489--32640544 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
32640479 AACAACGGTG
*
32640489 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
* *
32640510 GTGGTGAGATTGGATACTGTA
1 GCGGTGAGATTAGATACTGTA
32640531 GCGGTGAGATTAGA
1 GCGGTGAGATTAGA
32640545 AACAATGGTA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.25, C:0.07, G:0.38, T:0.30
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:32647537 original size:14 final size:14
Alignment explanation
Indices: 32647514--32647550 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
32647504 ATCTTTTTCT
*
32647514 GAGTCCGCATTTAA
1 GAGTCCGCATTAAA
*
32647528 GAGTCTGCATTAAA
1 GAGTCCGCATTAAA
32647542 GAGTCCGCA
1 GAGTCCGCA
32647551 GGATTGTCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (14 bp):
GAGTCCGCATTAAA
Found at i:32652685 original size:25 final size:24
Alignment explanation
Indices: 32652653--32652727 Score: 89
Period size: 25 Copynumber: 3.0 Consensus size: 24
32652643 AAACTCTCTC
32652653 TTGAGCCAAGTAACGGGAAGCTCA
1 TTGAGCCAAGTAACGGGAAGCTCA
*
32652677 TGTGAGCCAAGTAACGGGAAGGTCA
1 T-TGAGCCAAGTAACGGGAAGCTCA
* *
32652702 TTCGAGCTATA-TAATGGGAAGCTCA
1 TT-GAGCCA-AGTAACGGGAAGCTCA
32652727 T
1 T
32652728 AAGAGCCGTA
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
24 2 0.05
25 41 0.93
26 1 0.02
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.21
Consensus pattern (24 bp):
TTGAGCCAAGTAACGGGAAGCTCA
Found at i:32652845 original size:25 final size:25
Alignment explanation
Indices: 32652766--32652862 Score: 83
Period size: 25 Copynumber: 3.8 Consensus size: 25
32652756 GCCCATATCG
* * *
32652766 GGAAGCTTCGAAGAGTCAT-TAATCG
1 GGAAGC-TCTAAGAGCCATATAATCA
*
32652791 GGAAGCTCATAAGAGCCA-ATTATCA
1 GGAAGCTC-TAAGAGCCATATAATCA
* *
32652816 AGAAGCTCGTAAGAACCATATAAT-A
1 GGAAGCTC-TAAGAGCCATATAATCA
32652841 GGAAGCTCTAGAGAGCCATATA
1 GGAAGCTCTA-AGAGCCATATA
32652863 TCGGGACGCT
Statistics
Matches: 58, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
24 4 0.07
25 50 0.86
26 4 0.07
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.21
Consensus pattern (25 bp):
GGAAGCTCTAAGAGCCATATAATCA
Found at i:32653310 original size:21 final size:21
Alignment explanation
Indices: 32653282--32653336 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
32653272 GATCTATAAA
*
32653282 AATA-AATTTAACA-TCAATTT
1 AATACAATTT-ACATTCAATTC
32653302 AATACAATTTACATTCAATTC
1 AATACAATTTACATTCAATTC
* *
32653323 AATCCAATTCACAT
1 AATACAATTTACAT
32653337 CTTAGGAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.23
21 23 0.77
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.36
Consensus pattern (21 bp):
AATACAATTTACATTCAATTC
Found at i:32654033 original size:30 final size:30
Alignment explanation
Indices: 32653999--32654058 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
32653989 AATTCCATAG
32653999 TTATTTGATTACTATAGCTACTAGAACTTA
1 TTATTTGATTACTATAGCTACTAGAACTTA
32654029 TTATTTGATTACTATAGCTACTAGAACTTA
1 TTATTTGATTACTATAGCTACTAGAACTTA
32654059 ACTTTTGCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.43
Consensus pattern (30 bp):
TTATTTGATTACTATAGCTACTAGAACTTA
Found at i:32657612 original size:16 final size:16
Alignment explanation
Indices: 32657591--32657621 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32657581 CTTGTTCTTT
*
32657591 GACTTGGATTTGATTC
1 GACTTGGATTCGATTC
32657607 GACTTGGATTCGATT
1 GACTTGGATTCGATT
32657622 TGAGTCCAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.13, G:0.26, T:0.42
Consensus pattern (16 bp):
GACTTGGATTCGATTC
Found at i:32665753 original size:16 final size:16
Alignment explanation
Indices: 32665732--32665766 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
32665722 AATGAATATA
* *
32665732 AATGTGTAAATGTGAT
1 AATGTGCAAATATGAT
32665748 AATGTGCAAATATGAT
1 AATGTGCAAATATGAT
32665764 AAT
1 AAT
32665767 TGGATATTGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.43, C:0.03, G:0.20, T:0.34
Consensus pattern (16 bp):
AATGTGCAAATATGAT
Found at i:32670995 original size:13 final size:13
Alignment explanation
Indices: 32670977--32671002 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32670967 CATCATTAAC
32670977 ATGTGTTTTAATT
1 ATGTGTTTTAATT
32670990 ATGTGTTTTAATT
1 ATGTGTTTTAATT
32671003 TTGACATCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.00, G:0.15, T:0.62
Consensus pattern (13 bp):
ATGTGTTTTAATT
Found at i:32673337 original size:16 final size:16
Alignment explanation
Indices: 32673312--32673345 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
32673302 ATGAATATAT
* *
32673312 ATGTGTAAATGTGATA
1 ATGTGCAAATATGATA
32673328 ATGTGCAAATATGATA
1 ATGTGCAAATATGATA
32673344 AT
1 AT
32673346 TGAATATTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.35
Consensus pattern (16 bp):
ATGTGCAAATATGATA
Found at i:32673986 original size:128 final size:128
Alignment explanation
Indices: 32673845--32674100 Score: 478
Period size: 128 Copynumber: 2.0 Consensus size: 128
32673835 ATGAAATATG
32673845 ATAGCATGTGTAAATTGAATGTAGTATT-AAATAATGTGCTAATATGTATGAATTCAAAAGGTTC
1 ATAGCATGTGTAAATTGAATGTAGT-TTGAAATAATGTGCTAATATGTATGAATTCAAAAGGTTC
32673909 GCATATGATAGTTGTGATATTAGTCATTAATATGTGTTTATAATTAAATTGTGCATTTTGTATT
65 GCATATGATAGTTGTGATATTAGTCATTAATATGTGTTTATAATTAAATTGTGCATTTTGTATT
*
32673973 ATAGCATGTGTAAATTGAATGTAGTTTGAAATAATGTGCTGATATGTATGAATTCAAAAGGTTCG
1 ATAGCATGTGTAAATTGAATGTAGTTTGAAATAATGTGCTAATATGTATGAATTCAAAAGGTTCG
*
32674038 CATATGATAGTTGTGATATTGGTCATTAATATGTGTTTATAATTAAATTGTGCATTTTGTATT
66 CATATGATAGTTGTGATATTAGTCATTAATATGTGTTTATAATTAAATTGTGCATTTTGTATT
32674101 CACCTGTCTT
Statistics
Matches: 125, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
127 2 0.02
128 123 0.98
ACGTcount: A:0.33, C:0.05, G:0.19, T:0.42
Consensus pattern (128 bp):
ATAGCATGTGTAAATTGAATGTAGTTTGAAATAATGTGCTAATATGTATGAATTCAAAAGGTTCG
CATATGATAGTTGTGATATTAGTCATTAATATGTGTTTATAATTAAATTGTGCATTTTGTATT
Found at i:32679944 original size:24 final size:25
Alignment explanation
Indices: 32679852--32679943 Score: 70
Period size: 24 Copynumber: 3.8 Consensus size: 25
32679842 GCACTCTCCC
32679852 GAGCCATATAACGGAAA-CTCAT-AA
1 GAGCCAT-TAACGGAAAGCTCATGAA
*
32679876 GAGCCA-TAATCAGG-AAGCTCATG-C
1 GAGCCATTAA-C-GGAAAGCTCATGAA
* * **
32679900 GAGCCAATAATGGGCAGCTC-TGAA
1 GAGCCATTAACGGAAAGCTCATGAA
32679924 GAGCCATTAACGGAAAGCTC
1 GAGCCATTAACGGAAAGCTC
32679944 TTGATAACCA
Statistics
Matches: 53, Mismatches: 8, Indels: 14
0.71 0.11 0.19
Matches are distributed among these distances:
22 3 0.06
23 7 0.13
24 40 0.75
25 3 0.06
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (25 bp):
GAGCCATTAACGGAAAGCTCATGAA
Found at i:32687557 original size:25 final size:25
Alignment explanation
Indices: 32687528--32687645 Score: 73
Period size: 25 Copynumber: 4.8 Consensus size: 25
32687518 CACTCTCTCA
32687528 AGCCATATAACGGGAAGCTCATGTG
1 AGCCATATAACGGGAAGCTCATGTG
* ** * **
32687553 AGCCATGTAACAAGAAGCTTATCCG
1 AGCCATATAACGGGAAGCTCATGTG
* * * **
32687578 GGCTATATAATGGGAAGCTCATAAG
1 AGCCATATAACGGGAAGCTCATGTG
*
32687603 AGCCATAATTAA---GAAGCTTATGTG
1 AGCCAT-A-TAACGGGAAGCTCATGTG
*
32687627 AGCCA-ATAACGGGTAGCTC
1 AGCCATATAACGGGAAGCTC
32687646 CGAAGAGCCA
Statistics
Matches: 66, Mismatches: 22, Indels: 11
0.67 0.22 0.11
Matches are distributed among these distances:
21 3 0.05
22 1 0.02
24 19 0.29
25 39 0.59
26 1 0.02
27 3 0.05
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.22
Consensus pattern (25 bp):
AGCCATATAACGGGAAGCTCATGTG
Found at i:32687766 original size:27 final size:26
Alignment explanation
Indices: 32687708--32687779 Score: 90
Period size: 27 Copynumber: 2.7 Consensus size: 26
32687698 AGAGCCATAT
* *
32687708 CGGGAAGCTCACAAAGAGGCTTTAAT
1 CGGGAAGCTCACAAAGAGCCTTTAAA
* *
32687734 CAGGAAGCTCATGAAAGAGCCTTTAAA
1 CGGGAAGCTCA-CAAAGAGCCTTTAAA
*
32687761 CGGGAAACTCACAAAGAGC
1 CGGGAAGCTCACAAAGAGC
32687780 TAAGGTGTGC
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
26 17 0.45
27 21 0.55
ACGTcount: A:0.39, C:0.21, G:0.25, T:0.15
Consensus pattern (26 bp):
CGGGAAGCTCACAAAGAGCCTTTAAA
Found at i:32689101 original size:25 final size:25
Alignment explanation
Indices: 32689068--32689124 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 25
32689058 TATATATATA
32689068 ATATATATTTGATTAAAAATAAAAT
1 ATATATATTTGATTAAAAATAAAAT
*
32689093 ATATATATTTGATTAAAAATAATAT
1 ATATATATTTGATTAAAAATAAAAT
*
32689118 CTATATA
1 ATATATA
32689125 ATATATAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.42
Consensus pattern (25 bp):
ATATATATTTGATTAAAAATAAAAT
Found at i:32700157 original size:5 final size:5
Alignment explanation
Indices: 32700147--32700215 Score: 59
Period size: 5 Copynumber: 13.0 Consensus size: 5
32700137 ATATGATGAA
* * *
32700147 ATATG ATATG ATATA ATATAAG ATATG CT-TCG ATATG AAATTTG ATATG
1 ATATG ATATG ATATG ATAT--G ATATG ATAT-G ATATG --ATATG ATATG
32700196 ATATG ATATG ATATG ATATG
1 ATATG ATATG ATATG ATATG
32700216 TAATAAATTA
Statistics
Matches: 52, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
4 1 0.02
5 42 0.81
6 1 0.02
7 8 0.15
ACGTcount: A:0.41, C:0.03, G:0.17, T:0.39
Consensus pattern (5 bp):
ATATG
Found at i:32700173 original size:22 final size:22
Alignment explanation
Indices: 32700147--32700209 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 22
32700137 ATATGATGAA
32700147 ATATGATATGATATAATATAAG
1 ATATGATATGATATAATATAAG
* **
32700169 ATATGCT-TCGATATGAA-ATTTG
1 ATATGATAT-GATAT-AATATAAG
*
32700191 ATATGATATGATATGATAT
1 ATATGATATGATATAATAT
32700210 GATATGTAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 8
0.71 0.11 0.18
Matches are distributed among these distances:
21 2 0.06
22 27 0.84
23 3 0.09
ACGTcount: A:0.41, C:0.03, G:0.16, T:0.40
Consensus pattern (22 bp):
ATATGATATGATATAATATAAG
Found at i:32700228 original size:54 final size:54
Alignment explanation
Indices: 32700147--32700249 Score: 129
Period size: 54 Copynumber: 1.9 Consensus size: 54
32700137 ATATGATGAA
* *
32700147 ATATGATATGATATAATATAAGATATGCTTCGATATGAAATTTGATATGATATG
1 ATATGATATGATATAATATAAGATATGCTCCGATATGAAATCTGATATGATATG
* * *
32700201 ATATGATATGATATGTAATA-AA-TTATGCTCCGTTATGATATCTGATATG
1 ATATGATATGATA--TAATATAAGATATGCTCCGATATGAAATCTGATATG
32700250 CCACGATACT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
54 35 0.83
55 2 0.05
56 5 0.12
ACGTcount: A:0.38, C:0.06, G:0.17, T:0.40
Consensus pattern (54 bp):
ATATGATATGATATAATATAAGATATGCTCCGATATGAAATCTGATATGATATG
Found at i:32703819 original size:19 final size:20
Alignment explanation
Indices: 32703770--32703827 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
32703760 GAAGATGAGA
* * *
32703770 AAAAGTAGAGAAAGAGAATG
1 AAAAGAAGAAAAAAAGAATG
32703790 AAAAGAAGAAAAAAAGAATG
1 AAAAGAAGAAAAAAAGAATG
*
32703810 GAAA-AAGAAAAAAAGAAT
1 AAAAGAAGAAAAAAAGAAT
32703828 ATGGCAAGGA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 14 0.41
20 20 0.59
ACGTcount: A:0.71, C:0.00, G:0.22, T:0.07
Consensus pattern (20 bp):
AAAAGAAGAAAAAAAGAATG
Found at i:32704296 original size:3 final size:3
Alignment explanation
Indices: 32704288--32704324 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
32704278 TTTGATCCCT
*
32704288 CTC CTC CTC CTC CTC CTC CTC CTC ATC CTC CTC CTC C
1 CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC C
32704325 CCCAAGCGCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.03, C:0.65, G:0.00, T:0.32
Consensus pattern (3 bp):
CTC
Found at i:32726548 original size:23 final size:23
Alignment explanation
Indices: 32726517--32726567 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
32726507 ACCTACTTTC
* *
32726517 TTACTGTAGTAATTTTCGGGGTA
1 TTACAGTAGTAATTTTCGGGATA
32726540 TTACAGTAGTAATTTTCGGGATA
1 TTACAGTAGTAATTTTCGGGATA
32726563 TTACA
1 TTACA
32726568 TTTTCAGGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.27, C:0.10, G:0.22, T:0.41
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCGGGATA
Found at i:32727058 original size:70 final size:70
Alignment explanation
Indices: 32726948--32727329 Score: 440
Period size: 70 Copynumber: 5.5 Consensus size: 70
32726938 TAAAGCTTGT
* * *
32726948 AGGTTTAATACCGCAGCCTCCAAACAATTAGTGAGTGTTAAAAGCTCCCAACTGTCACTCTAAGG
1 AGGTTTAATACCGCAGCCTCCAAACAGTTAGCGAGAGTTAAAAGCTCCCAACTGTCACTCTAAGG
*
32727013 CTCGT
66 CTCGC
* * * *
32727018 AGGTTTAATATCGCCGCCTCCAAATAGTTAGCGAGAGTTAAAAGCTCCCAACTGTCAATCTAAGG
1 AGGTTTAATACCGCAGCCTCCAAACAGTTAGCGAGAGTTAAAAGCTCCCAACTGTCACTCTAAGG
*
32727083 CTCCC
66 CTCGC
* * ** * * * * *
32727088 AGGTTTAATATCGCAACCTTTAAACAATTAGTGAGAGTTAAAAGCTCCTAAGTATCACTCTAAGG
1 AGGTTTAATACCGCAGCCTCCAAACAGTTAGCGAGAGTTAAAAGCTCCCAACTGTCACTCTAAGG
32727153 CTCGC
66 CTCGC
* * * * *
32727158 AGGTTTAATACCTCAGCCTCCAAATAGTTAGCGAGAGTTAAAAGCTCCCAGCTATCATTCTAAGG
1 AGGTTTAATACCGCAGCCTCCAAACAGTTAGCGAGAGTTAAAAGCTCCCAACTGTCACTCTAAGG
32727223 CTCGC
66 CTCGC
* * * ** *
32727228 AGGTTTAATACCACAGCCTTCAAACAGTTAGCGAGAGTTAAAAGCTCCTAGTTGTCATTCTAAGG
1 AGGTTTAATACCGCAGCCTCCAAACAGTTAGCGAGAGTTAAAAGCTCCCAACTGTCACTCTAAGG
**
32727293 CTCAT
66 CTCGC
* * * * *
32727298 AGGTTTGATATCACAGCCTCGAAATAGTTAGC
1 AGGTTTAATACCGCAGCCTCCAAACAGTTAGC
32727330 ACGAGCTCAA
Statistics
Matches: 266, Mismatches: 46, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
70 266 1.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.27
Consensus pattern (70 bp):
AGGTTTAATACCGCAGCCTCCAAACAGTTAGCGAGAGTTAAAAGCTCCCAACTGTCACTCTAAGG
CTCGC
Found at i:32727188 original size:140 final size:140
Alignment explanation
Indices: 32726948--32727329 Score: 532
Period size: 140 Copynumber: 2.7 Consensus size: 140
32726938 TAAAGCTTGT
* * * *
32726948 AGGTTTAATACCGCAGCCTCCAAACAATTAGTGAGTGTTAAAAGCTCCCAACTGTCACTCTAAGG
1 AGGTTTAATACCGCAGCCTTCAAACAATTAGTGAGAGTTAAAAGCTCCTAAGTGTCACTCTAAGG
* * *
32727013 CTCGTAGGTTTAATATCGCCGCCTCCAAATAGTTAGCGAGAGTTAAAAGCTCCCAACTGTCAATC
66 CTCGTAGGTTTAATATCACAGCCTCCAAATAGTTAGCGAGAGTTAAAAGCTCCCAACTATCAATC
32727078 TAAGGCTCCC
131 TAAGGCTCCC
* * * *
32727088 AGGTTTAATATCGCAACCTTTAAACAATTAGTGAGAGTTAAAAGCTCCTAAGTATCACTCTAAGG
1 AGGTTTAATACCGCAGCCTTCAAACAATTAGTGAGAGTTAAAAGCTCCTAAGTGTCACTCTAAGG
* * * * *
32727153 CTCGCAGGTTTAATACCTCAGCCTCCAAATAGTTAGCGAGAGTTAAAAGCTCCCAGCTATCATTC
66 CTCGTAGGTTTAATATCACAGCCTCCAAATAGTTAGCGAGAGTTAAAAGCTCCCAACTATCAATC
*
32727218 TAAGGCTCGC
131 TAAGGCTCCC
* * * *
32727228 AGGTTTAATACCACAGCCTTCAAACAGTTAGCGAGAGTTAAAAGCTCCT-AGTTGTCATTCTAAG
1 AGGTTTAATACCGCAGCCTTCAAACAATTAGTGAGAGTTAAAAGCTCCTAAG-TGTCACTCTAAG
* * *
32727292 GCTCATAGGTTTGATATCACAGCCTCGAAATAGTTAGC
65 GCTCGTAGGTTTAATATCACAGCCTCCAAATAGTTAGC
32727330 ACGAGCTCAA
Statistics
Matches: 211, Mismatches: 30, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
139 2 0.01
140 209 0.99
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.27
Consensus pattern (140 bp):
AGGTTTAATACCGCAGCCTTCAAACAATTAGTGAGAGTTAAAAGCTCCTAAGTGTCACTCTAAGG
CTCGTAGGTTTAATATCACAGCCTCCAAATAGTTAGCGAGAGTTAAAAGCTCCCAACTATCAATC
TAAGGCTCCC
Found at i:32740076 original size:25 final size:24
Alignment explanation
Indices: 32739974--32740090 Score: 78
Period size: 25 Copynumber: 4.8 Consensus size: 24
32739964 CATGTAAACG
* *
32739974 GGAAGCTCTTGTGAGCCAATTATC-
1 GGAAGCTCATGAGAGCCAA-TATCA
*
32739998 GAGAAGCTCATGCA-AGCC-ATAAACA
1 G-GAAGCTCATG-AGAGCCAAT-ATCA
* * * *
32740023 GAAAGCTCAAGAGAGCCATTAATCG
1 GGAAGCTCATGAGAGCCAAT-ATCA
32740048 GGAAGCTCATGAGAGCCACATATCA
1 GGAAGCTCATGAGAGCCA-ATATCA
* *
32740073 GGAAACTCGTGAGAGCCA
1 GGAAGCTCATGAGAGCCA
32740091 TATAACGGGG
Statistics
Matches: 72, Mismatches: 14, Indels: 13
0.73 0.14 0.13
Matches are distributed among these distances:
23 2 0.03
24 16 0.22
25 53 0.74
26 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.25, T:0.17
Consensus pattern (24 bp):
GGAAGCTCATGAGAGCCAATATCA
Found at i:32743626 original size:57 final size:57
Alignment explanation
Indices: 32743556--32743762 Score: 220
Period size: 57 Copynumber: 3.6 Consensus size: 57
32743546 GAGCAACTTT
* * *
32743556 ATACTTGAGAAAATTTGAAAGATAACCAACTTGGGATGTAGATCCGCAAGCTGTTTC
1 ATACTTAAAAAAATTTGAAAGATAACCAACTGGGGATGTAGATCCGCAAGCTGTTTC
* * *
32743613 ATACTTAAAAAAATTTGAAAGATAACCAACTGGGGATATAGATGCGTAAGCTGTTTC
1 ATACTTAAAAAAATTTGAAAGATAACCAACTGGGGATGTAGATCCGCAAGCTGTTTC
* * * ** * * *
32743670 ATACTTAAGAAAATTTAAAAGAAAAATAGCTGGGGATGT-GAAACCGCAAGTTGTATT-
1 ATACTTAAAAAAATTTGAAAGATAACCAACTGGGGATGTAG-ATCCGCAAGCTGT-TTC
* *
32743727 ATACTTAAGAAAATTTTGAAAGATAACACACCTGGG
1 ATACTTAA-AAAAATTTGAAAGATAAC-CAACTGGG
32743763 AGTTTTTAAC
Statistics
Matches: 122, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
56 1 0.01
57 100 0.82
58 15 0.12
59 6 0.05
ACGTcount: A:0.41, C:0.13, G:0.20, T:0.27
Consensus pattern (57 bp):
ATACTTAAAAAAATTTGAAAGATAACCAACTGGGGATGTAGATCCGCAAGCTGTTTC
Found at i:32743863 original size:69 final size:68
Alignment explanation
Indices: 32743778--32744000 Score: 329
Period size: 69 Copynumber: 3.2 Consensus size: 68
32743768 TTAACTCTTG
* * *
32743778 CTAACTATGTTAGAGGTTGTAGTCTTTATCCTACGAGCCTTAGTATGACAGTTGGGAGCTTTGCT
1 CTAACTATGTTGGAGGTTGCAGT-TTTATCCTGCGAGCCTTAGTATGACAGTTGGGAGCTTTGCT
32743843 CTCA
65 CTCA
*
32743847 CTAACTAAGTTGGAGGTTGCAGTTTTTATCCTGCGAGCCTTAGTATGACAGTTGGGAGCTTTGCT
1 CTAACTATGTTGGAGGTTGCAG-TTTTATCCTGCGAGCCTTAGTATGACAGTTGGGAGCTTTGCT
*
32743912 CTTA
65 CTCA
* * * *
32743916 CTAACTGTGTTGGAGGCTACAGTTTTAATCCTGCGAGCCTTAATATGACAGTTGGGAGCTTTGCT
1 CTAACTATGTTGGAGGTTGCAGTTTT-ATCCTGCGAGCCTTAGTATGACAGTTGGGAGCTTTGCT
32743981 CTCA
65 CTCA
*
32743985 CTAACTGTGTTGGAGG
1 CTAACTATGTTGGAGG
32744001 CTACATCTCT
Statistics
Matches: 141, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
68 4 0.03
69 136 0.96
70 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (68 bp):
CTAACTATGTTGGAGGTTGCAGTTTTATCCTGCGAGCCTTAGTATGACAGTTGGGAGCTTTGCTC
TCA
Found at i:32744001 original size:69 final size:69
Alignment explanation
Indices: 32743805--32744034 Score: 329
Period size: 69 Copynumber: 3.3 Consensus size: 69
32743795 TGTAGTCTTT
* * ** * *
32743805 ATCCTACGAGCCTTAGTATGACAGTTGGGAGCTTTGCTCTCACTAACTAAGTTGGAGGTTGCAGT
1 ATCCTGCGAGCCTTAATATGACAGTTGGGAGCTTTGCTCTCACTAACTGTGTTGGAGGCTACAGT
*
32743870 TTTT
66 TTTA
* *
32743874 ATCCTGCGAGCCTTAGTATGACAGTTGGGAGCTTTGCTCTTACTAACTGTGTTGGAGGCTACAGT
1 ATCCTGCGAGCCTTAATATGACAGTTGGGAGCTTTGCTCTCACTAACTGTGTTGGAGGCTACAGT
32743939 TTTA
66 TTTA
32743943 ATCCTGCGAGCCTTAATATGACAGTTGGGAGCTTTGCTCTCACTAACTGTGTTGGAGGCTACA-T
1 ATCCTGCGAGCCTTAATATGACAGTTGGGAGCTTTGCTCTCACTAACTGTGTTGGAGGCTACAGT
*
32744007 CTCTTC
66 -T-TTA
*
32744013 A-CGTGCGAGCCTTAATATGACA
1 ATCCTGCGAGCCTTAATATGACA
32744035 TAAATGTTGT
Statistics
Matches: 148, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
68 1 0.01
69 144 0.97
70 3 0.02
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (69 bp):
ATCCTGCGAGCCTTAATATGACAGTTGGGAGCTTTGCTCTCACTAACTGTGTTGGAGGCTACAGT
TTTA
Found at i:32753618 original size:15 final size:15
Alignment explanation
Indices: 32753598--32753628 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
32753588 AAAACAACAT
32753598 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
32753613 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
32753628 A
1 A
32753629 CTTACATAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.32, G:0.06, T:0.39
Consensus pattern (15 bp):
AACTCTTGACCTTTC
Found at i:32757967 original size:15 final size:15
Alignment explanation
Indices: 32757947--32757977 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
32757937 AAAACAACAT
32757947 AACTCTTAACCTTTC
1 AACTCTTAACCTTTC
*
32757962 AACTCTTGACCTTTC
1 AACTCTTAACCTTTC
32757977 A
1 A
32757978 CTTACATAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.32, G:0.03, T:0.39
Consensus pattern (15 bp):
AACTCTTAACCTTTC
Found at i:32758437 original size:20 final size:20
Alignment explanation
Indices: 32758412--32758465 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 20
32758402 AGGGTTCAAA
32758412 TCTTTTTTGTTCTTCTATAC
1 TCTTTTTTGTTCTTCTATAC
* *
32758432 TCTTTTTT-TTCTCTCTCTCC
1 TCTTTTTTGTTCT-TCTATAC
32758452 T-TTTTTGTGTTCTT
1 TCTTTTT-TGTTCTT
32758466 TTTACCCAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
19 9 0.31
20 16 0.55
21 4 0.14
ACGTcount: A:0.04, C:0.22, G:0.06, T:0.69
Consensus pattern (20 bp):
TCTTTTTTGTTCTTCTATAC
Found at i:32758533 original size:37 final size:37
Alignment explanation
Indices: 32758461--32758533 Score: 94
Period size: 37 Copynumber: 2.0 Consensus size: 37
32758451 CTTTTTTGTG
* * *
32758461 TTCTTTTTACCCAAAAAAGCTCATCTATATGTTGTTA
1 TTCTTTTTACCCAAAAAACCGCATCTATATATTGTTA
*
32758498 TTCTTTTTACCCAAAATACCGCAT-TGATATATTGTT
1 TTCTTTTTACCCAAAAAACCGCATCT-ATATATTGTT
32758534 GGGACATTGA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 1 0.03
37 30 0.97
ACGTcount: A:0.29, C:0.19, G:0.08, T:0.44
Consensus pattern (37 bp):
TTCTTTTTACCCAAAAAACCGCATCTATATATTGTTA
Found at i:32765591 original size:22 final size:22
Alignment explanation
Indices: 32765563--32765607 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
32765553 TTACTTTGTG
32765563 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
32765585 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
32765607 T
1 T
32765608 TTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:32770159 original size:22 final size:22
Alignment explanation
Indices: 32770131--32770175 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
32770121 AGGGGGAGTG
32770131 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
32770153 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
32770175 T
1 T
32770176 TTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:32776244 original size:30 final size:31
Alignment explanation
Indices: 32776209--32776274 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 31
32776199 GTAAGGGTTA
* *
32776209 ATTTCAATTTTTG-AATCTTATTTAATATTTT
1 ATTTCAATTTATGTAATCTTAATTAAT-TTTT
*
32776240 -TTTC-ATTTATGTAATTTTAATTAATTTTT
1 ATTTCAATTTATGTAATCTTAATTAATTTTT
32776269 ATTTCA
1 ATTTCA
32776275 TAATTTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
29 10 0.34
30 19 0.66
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.62
Consensus pattern (31 bp):
ATTTCAATTTATGTAATCTTAATTAATTTTT
Found at i:32777813 original size:18 final size:18
Alignment explanation
Indices: 32777790--32777825 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
32777780 TGTCAGGTGC
32777790 GTATCCTAGCCCTTATAT
1 GTATCCTAGCCCTTATAT
32777808 GTATCCTAGCCCTTATAT
1 GTATCCTAGCCCTTATAT
32777826 ATTTCCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.28, G:0.11, T:0.39
Consensus pattern (18 bp):
GTATCCTAGCCCTTATAT
Found at i:32777832 original size:18 final size:18
Alignment explanation
Indices: 32777791--32777832 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
32777781 GTCAGGTGCG
*
32777791 TATCCTAGCCCTTATATG
1 TATCCTAGCCCTTATATA
32777809 TATCCTAGCCCTTATATA
1 TATCCTAGCCCTTATATA
*
32777827 TTTCCT
1 TATCCT
32777833 TTTCCCAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.21, C:0.29, G:0.07, T:0.43
Consensus pattern (18 bp):
TATCCTAGCCCTTATATA
Found at i:32778896 original size:19 final size:19
Alignment explanation
Indices: 32778872--32778909 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
32778862 CCAAAAAGAG
32778872 ATTAATAATATCATATAAT
1 ATTAATAATATCATATAAT
32778891 ATTAATAATATCATATAAT
1 ATTAATAATATCATATAAT
32778910 TCCTTCATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (19 bp):
ATTAATAATATCATATAAT
Found at i:32790997 original size:5 final size:5
Alignment explanation
Indices: 32790987--32791012 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
32790977 ACAAACTTGA
32790987 AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT A
32791013 CTAATTAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:32793304 original size:17 final size:17
Alignment explanation
Indices: 32793282--32793319 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
32793272 GTTCATTTTT
32793282 ACTTTCTTGCACTTGTC
1 ACTTTCTTGCACTTGTC
32793299 ACTTTCTTGCACTTGTC
1 ACTTTCTTGCACTTGTC
32793316 ACTT
1 ACTT
32793320 AGTTCGTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.13, C:0.29, G:0.11, T:0.47
Consensus pattern (17 bp):
ACTTTCTTGCACTTGTC
Found at i:32795507 original size:15 final size:15
Alignment explanation
Indices: 32795482--32795517 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
32795472 ACAATTACTT
*
32795482 ATTTCAATTCAATTCA
1 ATTT-AATTCAATCCA
32795498 ATTTAATTCAATCCA
1 ATTTAATTCAATCCA
32795513 ATTTA
1 ATTTA
32795518 TATATTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 15 0.79
16 4 0.21
ACGTcount: A:0.39, C:0.17, G:0.00, T:0.44
Consensus pattern (15 bp):
ATTTAATTCAATCCA
Found at i:32798627 original size:40 final size:40
Alignment explanation
Indices: 32798478--32798663 Score: 202
Period size: 40 Copynumber: 4.7 Consensus size: 40
32798468 TTGAATGATG
* * *
32798478 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
* *
32798518 TCCGGACTAAGAT-CCGAAGGCATTTGTGCAAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
*
32798558 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
32798598 TTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTA-AA
*
32798639 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32798664 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
39 1 0.01
40 115 0.89
41 12 0.09
42 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:32800973 original size:26 final size:27
Alignment explanation
Indices: 32800934--32801000 Score: 66
Period size: 26 Copynumber: 2.5 Consensus size: 27
32800924 CCCTACAATT
* *
32800934 ATAGCCTATATGGCACAAT-ATGAAAGG
1 ATAGCCTCTGTGGC-CAATCATGAAAGG
* * *
32800961 A-AGCCTTTGTGGCGAATCATGAAGGG
1 ATAGCCTCTGTGGCCAATCATGAAAGG
32800987 ATAGCCTCTGTGGC
1 ATAGCCTCTGTGGC
32801001 GTACCATGGA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
25 3 0.09
26 18 0.55
27 12 0.36
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (27 bp):
ATAGCCTCTGTGGCCAATCATGAAAGG
Found at i:32801008 original size:27 final size:26
Alignment explanation
Indices: 32800953--32801019 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 26
32800943 ATGGCACAAT
* *
32800953 ATGAAAGGAAGCCTTTGTGGCGAATC
1 ATGAAAGGAAGCCTCTGTGGCGAACC
* *
32800979 ATGAAGGGATAGCCTCTGTGGCGTACC
1 ATGAAAGGA-AGCCTCTGTGGCGAACC
* *
32801006 ATGGAATGAAGCCT
1 ATGAAAGGAAGCCT
32801020 TTATGGAGGA
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
26 13 0.39
27 20 0.61
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.22
Consensus pattern (26 bp):
ATGAAAGGAAGCCTCTGTGGCGAACC
Found at i:32818684 original size:17 final size:17
Alignment explanation
Indices: 32818662--32818694 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
32818652 AAGTAGAGAA
32818662 TTTGAATAAA-TAATTTT
1 TTTGAA-AAATTAATTTT
32818679 TTTGAAAAATTAATTT
1 TTTGAAAAATTAATTT
32818695 GGAAAATCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (17 bp):
TTTGAAAAATTAATTTT
Found at i:32819543 original size:31 final size:31
Alignment explanation
Indices: 32819508--32819676 Score: 184
Period size: 31 Copynumber: 5.5 Consensus size: 31
32819498 AATCTTAAAT
* *
32819508 TTAATTTAATATTTATCTAGATAGTATTTTA
1 TTAATTTAATATTAATCTAGATAATATTTTA
* * *
32819539 TTAATTTAATATTAATAT-TAT-ATATTTAA
1 TTAATTTAATATTAATCTAGATAATATTTTA
* *
32819568 TTTAATTTAATATTCATCAAGATAATATTTTA
1 -TTAATTTAATATTAATCTAGATAATATTTTA
* **
32819600 TTAATTTAATATTAATATGAGATAATA-AAT-
1 TTAATTTAATATTAATCT-AGATAATATTTTA
* *
32819630 TTAATTTAATATTTATCTTGATAATATTTTA
1 TTAATTTAATATTAATCTAGATAATATTTTA
32819661 TTAATTTAATATTAAT
1 TTAATTTAATATTAAT
32819677 GTGATTAATT
Statistics
Matches: 111, Mismatches: 21, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
29 13 0.12
30 34 0.31
31 49 0.44
32 15 0.14
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (31 bp):
TTAATTTAATATTAATCTAGATAATATTTTA
Found at i:32819577 original size:61 final size:61
Alignment explanation
Indices: 32819503--32819676 Score: 276
Period size: 61 Copynumber: 2.9 Consensus size: 61
32819493 AATTTAATCT
* * * *
32819503 TAAATTTAATTTAATATTTATCTAGATAGTATTTTATTAATTTAATATTAATATTATATAT
1 TAAATTTAATTTAATATTTATCTAGATAATATTTTATTAATTTAATATTAATATGAGATAA
* * *
32819564 TTAATTTAATTTAATATTCATCAAGATAATATTTTATTAATTTAATATTAATATGAGATAA
1 TAAATTTAATTTAATATTTATCTAGATAATATTTTATTAATTTAATATTAATATGAGATAA
*
32819625 TAAATTTAATTTAATATTTATCTTGATAATATTTTATTAATTTAATATTAAT
1 TAAATTTAATTTAATATTTATCTAGATAATATTTTATTAATTTAATATTAAT
32819677 GTGATTAATT
Statistics
Matches: 102, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
61 102 1.00
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.52
Consensus pattern (61 bp):
TAAATTTAATTTAATATTTATCTAGATAATATTTTATTAATTTAATATTAATATGAGATAA
Found at i:32819806 original size:12 final size:13
Alignment explanation
Indices: 32819775--32819807 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
32819765 AGTTGTAGAG
32819775 AGAAAATGTTTTGA
1 AGAAAATGTTTT-A
32819789 AGAAAATGTTTT-
1 AGAAAATGTTTTA
32819801 AGAAAAT
1 AGAAAAT
32819808 TTCTAGAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
14 12 0.63
ACGTcount: A:0.48, C:0.00, G:0.18, T:0.33
Consensus pattern (13 bp):
AGAAAATGTTTTA
Found at i:32829274 original size:40 final size:40
Alignment explanation
Indices: 32829237--32829460 Score: 210
Period size: 40 Copynumber: 5.6 Consensus size: 40
32829227 ACTACTCGTT
*
32829237 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
32829277 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
32829317 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * *
32829356 CAAATGCCTTC-GGATCTTAGTCCGAATT-TAGTATCTCTCA
1 CAAATGCCTTCGGGA-CTTAGCCCG-GTTATAGTAACTCGCA
* * * * * *
32829396 CAAATGCCTTC-GGATCTTAGTCCAGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
32829437 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
32829461 ACATCATTCA
Statistics
Matches: 153, Mismatches: 21, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
38 2 0.01
39 31 0.20
40 108 0.71
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:32829348 original size:79 final size:79
Alignment explanation
Indices: 32829237--32829461 Score: 258
Period size: 79 Copynumber: 2.8 Consensus size: 79
32829227 ACTACTCGTT
* * *
32829237 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
32829302 ATTTAGTAACTCACA
65 ATTTAGTAACTCACA
* *
32829317 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCG
* * *
32829380 AATTTAGTATCTCTCA
64 GATTTAGTAACTCACA
* * * * * *
32829396 CAAATGCCTTCGGATCTTAGTCCAGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
32829460 GA
64 GA
32829462 CATCATTCAA
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
78 4 0.03
79 64 0.52
80 42 0.34
81 12 0.10
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
TTTAGTAACTCACA
Found at i:32833340 original size:13 final size:13
Alignment explanation
Indices: 32833322--32833349 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
32833312 AGCACAAAAC
32833322 CTAGTTCCTTTAA
1 CTAGTTCCTTTAA
32833335 CTAGTTCCTTTAA
1 CTAGTTCCTTTAA
32833348 CT
1 CT
32833350 TTCAAGCACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.25, G:0.07, T:0.46
Consensus pattern (13 bp):
CTAGTTCCTTTAA
Found at i:32833681 original size:16 final size:15
Alignment explanation
Indices: 32833660--32833689 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
32833650 GATCACCACA
32833660 AGCTTCCAACCAATCG
1 AGCTTCCAA-CAATCG
32833676 AGCTTCCAACAATC
1 AGCTTCCAACAATC
32833690 TACAAAACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.37, G:0.10, T:0.20
Consensus pattern (15 bp):
AGCTTCCAACAATCG
Found at i:32838928 original size:13 final size:13
Alignment explanation
Indices: 32838910--32838934 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32838900 GTTTACAAGA
32838910 TTACATAATCAAT
1 TTACATAATCAAT
32838923 TTACATAATCAA
1 TTACATAATCAA
32838935 ATTAAATCTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (13 bp):
TTACATAATCAAT
Found at i:32838973 original size:25 final size:25
Alignment explanation
Indices: 32838945--32838998 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
32838935 ATTAAATCTC
*
32838945 ATCTTATAAGA-TATGATTCCCTTTA
1 ATCTTATAAGATTA-GATTCCCCTTA
* *
32838970 ATCTTCTAAGATTAGTTTCCCCTTA
1 ATCTTATAAGATTAGATTCCCCTTA
32838995 ATCT
1 ATCT
32838999 GATAGGCTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 23 0.92
26 2 0.08
ACGTcount: A:0.28, C:0.20, G:0.07, T:0.44
Consensus pattern (25 bp):
ATCTTATAAGATTAGATTCCCCTTA
Found at i:32861625 original size:19 final size:19
Alignment explanation
Indices: 32861597--32861636 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
32861587 TTATAATTTA
32861597 ATTATAA-TTTTTATAACAT
1 ATTATAATTTTTTAT-ACAT
*
32861616 ATTATTATTTTTTATACAT
1 ATTATAATTTTTTATACAT
32861635 AT
1 AT
32861637 ATTTAACCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTATAATTTTTTATACAT
Found at i:32868208 original size:12 final size:12
Alignment explanation
Indices: 32868191--32868220 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
32868181 CCATACACAC
32868191 CCGTGTGCCAGG
1 CCGTGTGCCAGG
*
32868203 CCGTGTGCTAGG
1 CCGTGTGCCAGG
32868215 CCGTGT
1 CCGTGT
32868221 AACTCACTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.30, G:0.40, T:0.23
Consensus pattern (12 bp):
CCGTGTGCCAGG
Found at i:32869916 original size:21 final size:21
Alignment explanation
Indices: 32869892--32869934 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
32869882 TGTTTATTTT
32869892 TCAAC-AAGTATTCATAATCTA
1 TCAACAAAG-ATTCATAATCTA
32869913 TCAACAAAGATTCATAATCTA
1 TCAACAAAGATTCATAATCTA
32869934 T
1 T
32869935 AAAAAAAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.44, C:0.19, G:0.05, T:0.33
Consensus pattern (21 bp):
TCAACAAAGATTCATAATCTA
Found at i:32878802 original size:15 final size:16
Alignment explanation
Indices: 32878782--32878811 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32878772 TGGTGCTTTA
32878782 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
32878797 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
32878812 AGTAGGTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:32882079 original size:11 final size:11
Alignment explanation
Indices: 32882063--32882099 Score: 74
Period size: 11 Copynumber: 3.4 Consensus size: 11
32882053 ACTTACCTCC
32882063 ATAATTATTGT
1 ATAATTATTGT
32882074 ATAATTATTGT
1 ATAATTATTGT
32882085 ATAATTATTGT
1 ATAATTATTGT
32882096 ATAA
1 ATAA
32882100 AATCGATAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (11 bp):
ATAATTATTGT
Found at i:32887426 original size:25 final size:25
Alignment explanation
Indices: 32887391--32887468 Score: 97
Period size: 25 Copynumber: 3.1 Consensus size: 25
32887381 CACACCAAAA
32887391 CTCGTATGAGCTTACAAATTTGCAG
1 CTCGTATGAGCTTACAAATTTGCAG
*
32887416 CTCGTGA-GAGCTTACCAATTCT-CAG
1 CTCGT-ATGAGCTTACAAATT-TGCAG
**
32887441 CTCGTATGAGCTTACTGATTTGCAG
1 CTCGTATGAGCTTACAAATTTGCAG
32887466 CTC
1 CTC
32887469 ATAAGAGCAT
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
24 2 0.04
25 42 0.91
26 2 0.04
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.32
Consensus pattern (25 bp):
CTCGTATGAGCTTACAAATTTGCAG
Found at i:32887454 original size:50 final size:50
Alignment explanation
Indices: 32887391--32887506 Score: 153
Period size: 50 Copynumber: 2.3 Consensus size: 50
32887381 CACACCAAAA
* * *
32887391 CTCGTATGAGCTTACAAATTTGCAGCTCGTGAGAGCTTACCAATTC-TCAG
1 CTCGTATGAGCTTACAAATTTGCAGCTCATAAGAGCATACCAATTCAT-AG
** *
32887441 CTCGTATGAGCTTACTGATTTGCAGCTCATAAGAGCATACCGATTCATAG
1 CTCGTATGAGCTTACAAATTTGCAGCTCATAAGAGCATACCAATTCATAG
*
32887491 CTCGTATGAGCATACA
1 CTCGTATGAGCTTACA
32887507 TGTACAGGAA
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
50 56 0.98
51 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (50 bp):
CTCGTATGAGCTTACAAATTTGCAGCTCATAAGAGCATACCAATTCATAG
Found at i:32887476 original size:25 final size:25
Alignment explanation
Indices: 32887391--32887481 Score: 94
Period size: 25 Copynumber: 3.6 Consensus size: 25
32887381 CACACCAAAA
* *
32887391 CTCGTATGAGCTTACAAATTTGCAG
1 CTCGTAAGAGCTTACCAATTTGCAG
*
32887416 CTCGTGAGAGCTTACCAATTCT-CAG
1 CTCGTAAGAGCTTACCAATT-TGCAG
* **
32887441 CTCGTATGAGCTTACTGATTTGCAG
1 CTCGTAAGAGCTTACCAATTTGCAG
* *
32887466 CTCATAAGAGCATACC
1 CTCGTAAGAGCTTACC
32887482 GATTCATAGC
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
24 1 0.02
25 51 0.96
26 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (25 bp):
CTCGTAAGAGCTTACCAATTTGCAG
Found at i:32893184 original size:20 final size:20
Alignment explanation
Indices: 32893142--32893182 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
32893132 AAAGAAAGTG
*
32893142 AATGCAATGGAAAGTAATGA
1 AATGCAATGGAAAATAATGA
*
32893162 AATGCAATTGAAAATAA-GA
1 AATGCAATGGAAAATAATGA
32893181 AA
1 AA
32893183 ATTTGAAAGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.56, C:0.05, G:0.20, T:0.20
Consensus pattern (20 bp):
AATGCAATGGAAAATAATGA
Found at i:32896753 original size:15 final size:15
Alignment explanation
Indices: 32896733--32896763 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
32896723 CTTTTTCCAA
32896733 CATCATGGGTTGATT
1 CATCATGGGTTGATT
32896748 CATCATGGGTTGATT
1 CATCATGGGTTGATT
32896763 C
1 C
32896764 TTACATATAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.16, G:0.26, T:0.39
Consensus pattern (15 bp):
CATCATGGGTTGATT
Found at i:32897469 original size:6 final size:6
Alignment explanation
Indices: 32897448--32897481 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
32897438 AAATAAAGAC
32897448 AATTAA AATTACAA AATTAA AATTAA AATTAA AA
1 AATTAA AATT--AA AATTAA AATTAA AATTAA AA
32897482 AATTTTAGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 20 0.77
8 6 0.23
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (6 bp):
AATTAA
Found at i:32897473 original size:20 final size:20
Alignment explanation
Indices: 32897448--32897485 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
32897438 AAATAAAGAC
*
32897448 AATTAAAATTACAAAATTAA
1 AATTAAAATTAAAAAATTAA
32897468 AATTAAAATTAAAAAATT
1 AATTAAAATTAAAAAATT
32897486 TTAGATTACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (20 bp):
AATTAAAATTAAAAAATTAA
Found at i:32897856 original size:40 final size:40
Alignment explanation
Indices: 32897801--32897879 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
32897791 ATGGATAATC
32897801 TCTATGAATGGTATAAGGTCCTTTCCATCGGGATTTGAGA
1 TCTATGAATGGTATAAGGTCCTTTCCATCGGGATTTGAGA
32897841 TCTATGAATGGTATAAGGTCCTTTCCATCGGGATTTGAG
1 TCTATGAATGGTATAAGGTCCTTTCCATCGGGATTTGAG
32897880 CTTTCCCGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.35
Consensus pattern (40 bp):
TCTATGAATGGTATAAGGTCCTTTCCATCGGGATTTGAGA
Found at i:32913136 original size:12 final size:11
Alignment explanation
Indices: 32913107--32913140 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
32913097 TAGACCTAAG
32913107 TTGAATTAATT
1 TTGAATTAATT
*
32913118 TTGAATTCATT
1 TTGAATTAATT
32913129 TGTGAATTAATT
1 T-TGAATTAATT
32913141 CACTTGTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 11 0.55
12 9 0.45
ACGTcount: A:0.32, C:0.03, G:0.12, T:0.53
Consensus pattern (11 bp):
TTGAATTAATT
Found at i:32922607 original size:16 final size:17
Alignment explanation
Indices: 32922586--32922619 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
32922576 AAATATTATG
32922586 AAATAAA-AACAAACAA
1 AAATAAATAACAAACAA
*
32922602 AAATAAATATCAAACAA
1 AAATAAATAACAAACAA
32922619 A
1 A
32922620 TGTCATCCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (17 bp):
AAATAAATAACAAACAA
Found at i:32925409 original size:12 final size:12
Alignment explanation
Indices: 32925392--32925416 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32925382 TATTTTAATA
32925392 AATTTAATATTT
1 AATTTAATATTT
32925404 AATTTAATATTT
1 AATTTAATATTT
32925416 A
1 A
32925417 TCTATATAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
AATTTAATATTT
Found at i:32925444 original size:31 final size:29
Alignment explanation
Indices: 32925402--32925575 Score: 116
Period size: 31 Copynumber: 5.6 Consensus size: 29
32925392 AATTTAATAT
*
32925402 TTAATTTAATATTTATCTATATAGTATTTTA
1 TTAATTTAATATTAATCTA-ATA-TATTTTA
* * **
32925433 TTAGTTTAATATTAATGC-AAGATATTAAA
1 TTAATTTAATATTAAT-CTAATATATTTTA
*
32925462 TTTAATTTAATATTCATCTAGATAATATTTTA
1 -TTAATTTAATATTAATCTA-AT-ATATTTTA
* *
32925494 TTAATTTAATATTAATATGAAATATTAAATTTAA
1 TTAATTTAATATTAATCT--AATA-T--ATTTTA
* * *
32925528 TATAATATAATATTTATCTTGATAATATTTTA
1 T-TAATTTAATATTAATC-TAAT-ATATTTTA
32925560 TTAATTTAATATTAAT
1 TTAATTTAATATTAAT
32925576 GTGATTAATT
Statistics
Matches: 110, Mismatches: 20, Indels: 26
0.71 0.13 0.17
Matches are distributed among these distances:
29 6 0.05
30 17 0.15
31 46 0.42
32 16 0.15
33 1 0.01
34 9 0.08
35 14 0.13
36 1 0.01
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (29 bp):
TTAATTTAATATTAATCTAATATATTTTA
Found at i:32925570 original size:66 final size:67
Alignment explanation
Indices: 32925390--32925575 Score: 228
Period size: 61 Copynumber: 2.8 Consensus size: 67
32925380 ATTATTTTAA
* *
32925390 TAAATTTAATATTTAATTTAATATTTATCTAT-ATAGTATTTTATTAGTTTAATATT-A-ATGCA
1 TAAATTTAATA--TAA-TTAATATTTATCT-TGATAATATTTTATTAATTTAATATTAATATGCA
32925452 AGATAT
62 AGATAT
* *
32925458 TAAATTT-A-AT--TTAATATTCATCTAGATAATATTTTATTAATTTAATATTAATATG-AA-AT
1 TAAATTTAATATAATTAATATTTATCTTGATAATATTTTATTAATTTAATATTAATATGCAAGAT
32925517 AT
66 AT
32925519 TAAATTTAATATAATATAATATTTATCTTGATAATATTTTATTAATTTAATATTAAT
1 TAAATTTAATATAAT-TAATATTTATCTTGATAATATTTTATTAATTTAATATTAAT
32925576 GTGATTAATT
Statistics
Matches: 104, Mismatches: 6, Indels: 18
0.81 0.05 0.14
Matches are distributed among these distances:
61 45 0.43
62 4 0.04
63 5 0.05
64 1 0.01
65 1 0.01
66 40 0.38
67 1 0.01
68 7 0.07
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (67 bp):
TAAATTTAATATAATTAATATTTATCTTGATAATATTTTATTAATTTAATATTAATATGCAAGAT
AT
Found at i:32929983 original size:29 final size:29
Alignment explanation
Indices: 32929951--32930036 Score: 100
Period size: 29 Copynumber: 3.0 Consensus size: 29
32929941 AAAATCTGCC
*
32929951 AAATAACGAATAAATGCGATAAAATCACA
1 AAATAACGAATAAATGAGATAAAATCACA
* ** *
32929980 AAATAATGAATAAATGAGATAAAATTGCC
1 AAATAACGAATAAATGAGATAAAATCACA
* * *
32930009 AAATAACGAATAATTGTGACAAAATCAC
1 AAATAACGAATAAATGAGATAAAATCAC
32930037 CAGATTCCCT
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.56, C:0.12, G:0.12, T:0.21
Consensus pattern (29 bp):
AAATAACGAATAAATGAGATAAAATCACA
Found at i:32931456 original size:29 final size:30
Alignment explanation
Indices: 32931392--32931457 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
32931382 AAATACAAAA
*
32931392 ATAAATTACATTTTAGCCTCCAAATTTTTC
1 ATAAATTACATTTTAGACTCCAAATTTTTC
* *
32931422 AAAAATTATATTTT-GACTCCTAAATTTTTC
1 ATAAATTACATTTTAGACTCC-AAATTTTTC
32931452 -TAAATT
1 ATAAATT
32931458 TGTATCTTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
29 10 0.32
30 21 0.68
ACGTcount: A:0.36, C:0.15, G:0.03, T:0.45
Consensus pattern (30 bp):
ATAAATTACATTTTAGACTCCAAATTTTTC
Found at i:32931474 original size:30 final size:30
Alignment explanation
Indices: 32931413--32931480 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 30
32931403 TTTAGCCTCC
* * *
32931413 AAATTTTTCAAAAATTATATTTTGACTCCT
1 AAATTTTTCAAAAATTATATCTTAACCCCT
* * *
32931443 AAATTTTTCTAAATTTGTATCTTAACCCCT
1 AAATTTTTCAAAAATTATATCTTAACCCCT
32931473 AATATTTT
1 AA-ATTTT
32931481 GTAAATTACA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
30 26 0.84
31 5 0.16
ACGTcount: A:0.34, C:0.15, G:0.03, T:0.49
Consensus pattern (30 bp):
AAATTTTTCAAAAATTATATCTTAACCCCT
Found at i:32931543 original size:30 final size:29
Alignment explanation
Indices: 32931483--32931553 Score: 72
Period size: 29 Copynumber: 2.4 Consensus size: 29
32931473 AATATTTTGT
* *
32931483 AAATTACATTTGAGGCCCTAAAATTTCTAA
1 AAATTACATTTTAGGCCCCAAAATTTCT-A
* *
32931513 AAATTACATTTTA-GCCCCATATTTTCCTA
1 AAATTACATTTTAGGCCCCAAAATTT-CTA
*
32931542 AAATTGCATTTT
1 AAATTACATTTT
32931554 TACCCCAGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
29 21 0.60
30 14 0.40
ACGTcount: A:0.35, C:0.18, G:0.07, T:0.39
Consensus pattern (29 bp):
AAATTACATTTTAGGCCCCAAAATTTCTA
Found at i:32931910 original size:19 final size:19
Alignment explanation
Indices: 32931886--32931924 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
32931876 ACAACAACCA
32931886 ATAAGCAAAAAAAAACAAG
1 ATAAGCAAAAAAAAACAAG
32931905 ATAAGCAAAAAAAAACAAG
1 ATAAGCAAAAAAAAACAAG
32931924 A
1 A
32931925 AGCAAGTAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.74, C:0.10, G:0.10, T:0.05
Consensus pattern (19 bp):
ATAAGCAAAAAAAAACAAG
Found at i:32931927 original size:17 final size:18
Alignment explanation
Indices: 32931888--32931929 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 18
32931878 AACAACCAAT
32931888 AAGCAAAAAAAAACAAGA
1 AAGCAAAAAAAAACAAGA
32931906 TAAGCAAAAAAAAACAAG-
1 -AAGCAAAAAAAAACAAGA
32931924 AAGCAA
1 AAGCAA
32931930 GTAACAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 6 0.26
19 17 0.74
ACGTcount: A:0.74, C:0.12, G:0.12, T:0.02
Consensus pattern (18 bp):
AAGCAAAAAAAAACAAGA
Found at i:32931979 original size:14 final size:14
Alignment explanation
Indices: 32931939--32931989 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
32931929 AGTAACAAAC
*
32931939 AAAAATAAAAG-AG
1 AAAAAGAAAAGAAG
* * *
32931952 AAAGACAAAGGAAG
1 AAAAAGAAAAGAAG
32931966 AAAAAGAAAAGAAG
1 AAAAAGAAAAGAAG
*
32931980 AAAAGGAAAA
1 AAAAAGAAAA
32931990 AGGGAGGAGA
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
13 8 0.27
14 22 0.73
ACGTcount: A:0.75, C:0.02, G:0.22, T:0.02
Consensus pattern (14 bp):
AAAAAGAAAAGAAG
Done.