Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60343961
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 596159 characters in sequence are not A, C, G, or T
File 118 of 204
Found at i:36714529 original size:3 final size:3
Alignment explanation
Indices: 36714514--36714603 Score: 65
Period size: 3 Copynumber: 29.0 Consensus size: 3
36714504 TGAATGAGTA
* *
36714514 AAT AAT TAT AAT AAT AAT AAGT AAGT AAT AAT AAT AA- ATAC AAT AAT
1 AAT AAT AAT AAT AAT AAT AA-T AA-T AAT AAT AAT AAT A-AT AAT AAT
** * * * *
36714561 AGC AAT AAT AAT ATTT AAA AAT AAT AAT AAT AGT AAA AAT AAT
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT
36714604 GATATTGTTA
Statistics
Matches: 68, Mismatches: 15, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
2 1 0.01
3 57 0.84
4 10 0.15
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:36714615 original size:18 final size:19
Alignment explanation
Indices: 36714564--36714626 Score: 67
Period size: 18 Copynumber: 3.4 Consensus size: 19
36714554 CAATAATAGC
*
36714564 AATAATAATATTTAAAAAT
1 AATAATAATAGTTAAAAAT
36714583 AATAATAATAG-TAAAAAT
1 AATAATAATAGTTAAAAAT
* * *
36714601 AATGAT-ATTGTTAAAATT
1 AATAATAATAGTTAAAAAT
36714619 AATTAATA
1 AA-TAATA
36714627 GCAAAAAAGG
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
17 3 0.08
18 20 0.56
19 13 0.36
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.37
Consensus pattern (19 bp):
AATAATAATAGTTAAAAAT
Found at i:36715362 original size:12 final size:12
Alignment explanation
Indices: 36715345--36715376 Score: 57
Period size: 11 Copynumber: 2.8 Consensus size: 12
36715335 AGTATGTGAA
36715345 AAAAAGGAAAAC
1 AAAAAGGAAAAC
36715357 AAAAA-GAAAAC
1 AAAAAGGAAAAC
36715368 AAAAAGGAA
1 AAAAAGGAA
36715377 TCAAACAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.58
12 8 0.42
ACGTcount: A:0.78, C:0.06, G:0.16, T:0.00
Consensus pattern (12 bp):
AAAAAGGAAAAC
Found at i:36720614 original size:10 final size:10
Alignment explanation
Indices: 36720599--36720624 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
36720589 CTTACTGATC
36720599 TGTTAGTATT
1 TGTTAGTATT
36720609 TGTTAGTATT
1 TGTTAGTATT
36720619 TGTTAG
1 TGTTAG
36720625 CACCTAATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.23, T:0.58
Consensus pattern (10 bp):
TGTTAGTATT
Found at i:36722642 original size:32 final size:32
Alignment explanation
Indices: 36722606--36722682 Score: 86
Period size: 33 Copynumber: 2.4 Consensus size: 32
36722596 AACTTTTTCG
*
36722606 AAAAATATTTTCAGGAAA-TC-TGCCAAACAACA
1 AAAAATATTTTCA-CAAATTCAT-CCAAACAACA
*
36722638 AAAAATATTTTACACAAATTCATCCAAACACCA
1 AAAAATATTTT-CACAAATTCATCCAAACAACA
*
36722671 GAAAATATTTTC
1 AAAAATATTTTC
36722683 CGTAAATCAT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
32 15 0.38
33 23 0.59
34 1 0.03
ACGTcount: A:0.49, C:0.19, G:0.05, T:0.26
Consensus pattern (32 bp):
AAAAATATTTTCACAAATTCATCCAAACAACA
Found at i:36722696 original size:14 final size:14
Alignment explanation
Indices: 36722668--36722709 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
36722658 CATCCAAACA
36722668 CCAGAAAAT-ATTTT
1 CCAG-AAATCATTTT
36722682 CC-GTAAATCATTTT
1 CCAG-AAATCATTTT
36722696 CCAGAAATCATTTT
1 CCAGAAATCATTTT
36722710 ACGGAAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
13 5 0.20
14 19 0.76
15 1 0.04
ACGTcount: A:0.36, C:0.19, G:0.07, T:0.38
Consensus pattern (14 bp):
CCAGAAATCATTTT
Found at i:36722716 original size:14 final size:14
Alignment explanation
Indices: 36722673--36722716 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
36722663 AAACACCAGA
*
36722673 AAAT-ATTTTCCGT
1 AAATCATTTTCCGG
*
36722686 AAATCATTTTCCAG
1 AAATCATTTTCCGG
*
36722700 AAATCATTTTACGG
1 AAATCATTTTCCGG
36722714 AAA
1 AAA
36722717 ATATTTTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
13 4 0.15
14 22 0.85
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (14 bp):
AAATCATTTTCCGG
Found at i:36728524 original size:6 final size:7
Alignment explanation
Indices: 36728513--36728538 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
36728503 TTGTTATTTG
36728513 CAAAAAA
1 CAAAAAA
36728520 CAAAAAA
1 CAAAAAA
36728527 CAAAAAA
1 CAAAAAA
36728534 CAAAA
1 CAAAA
36728539 TAGATTTAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (7 bp):
CAAAAAA
Found at i:36739722 original size:19 final size:18
Alignment explanation
Indices: 36739700--36739739 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
36739690 ATGATAAAAC
36739700 TTATCTA-TCTAAATAAGAT
1 TTATCTACT-TAAATAA-AT
36739719 TTATCTACTTAAATAAAT
1 TTATCTACTTAAATAAAT
36739737 TTA
1 TTA
36739740 AAATATATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 5 0.25
19 14 0.70
20 1 0.05
ACGTcount: A:0.42, C:0.10, G:0.03, T:0.45
Consensus pattern (18 bp):
TTATCTACTTAAATAAAT
Found at i:36744010 original size:42 final size:42
Alignment explanation
Indices: 36743951--36744031 Score: 135
Period size: 42 Copynumber: 1.9 Consensus size: 42
36743941 AAGAGTCCTA
36743951 AAAATAATTCCCTTATTCTAATAAACTACTAAAACATAAGGG
1 AAAATAATTCCCTTATTCTAATAAACTACTAAAACATAAGGG
* * *
36743993 AAAATAGTTTCCTTATTCTAATAAACTACTAAAAGATAA
1 AAAATAATTCCCTTATTCTAATAAACTACTAAAACATAA
36744032 AATAAAATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.48, C:0.15, G:0.06, T:0.31
Consensus pattern (42 bp):
AAAATAATTCCCTTATTCTAATAAACTACTAAAACATAAGGG
Found at i:36744084 original size:19 final size:18
Alignment explanation
Indices: 36744062--36744101 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
36744052 TGAATAAAAC
36744062 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
*
36744081 TTATCTACCTACATAAAT
1 TTATCTACCTAAATAAAT
36744099 TTA
1 TTA
36744102 AAACATATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.40, C:0.17, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:36745257 original size:16 final size:16
Alignment explanation
Indices: 36745225--36745266 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
36745215 TGGGTTACGA
*
36745225 TTTCTTATTTA-TTTT
1 TTTCTTTTTTATTTTT
*
36745240 TTT-ATTTTTATTTTT
1 TTTCTTTTTTATTTTT
36745255 TTTCTTTTTTAT
1 TTTCTTTTTTAT
36745267 ACGAAAATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
14 5 0.23
15 10 0.45
16 7 0.32
ACGTcount: A:0.12, C:0.05, G:0.00, T:0.83
Consensus pattern (16 bp):
TTTCTTTTTTATTTTT
Found at i:36746036 original size:21 final size:21
Alignment explanation
Indices: 36746004--36746045 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
36745994 ACTATTTTGC
*
36746004 TCATTATTTTTAATATTATTA
1 TCATTATTTTTAATAATATTA
*
36746025 TCATT-TTCTTTATTAATATTA
1 TCATTATT-TTTAATAATATTA
36746046 ATATTAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (21 bp):
TCATTATTTTTAATAATATTA
Found at i:36746046 original size:6 final size:6
Alignment explanation
Indices: 36746035--36746087 Score: 61
Period size: 6 Copynumber: 8.8 Consensus size: 6
36746025 TCATTTTCTT
* * * * *
36746035 TATTAA TATTAA TATTAA TAATAA TAATAA TAATAA TATTAT TATTAT
1 TATTAA TATTAA TATTAA TATTAA TATTAA TATTAA TATTAA TATTAA
36746083 TATTA
1 TATTA
36746088 TCTTTACTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (6 bp):
TATTAA
Found at i:36746058 original size:3 final size:3
Alignment explanation
Indices: 36746038--36746072 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
36746028 TTTTCTTTAT
* *
36746038 TAA TAT TAA TAT TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
36746073 TTATTATTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (3 bp):
TAA
Found at i:36746077 original size:3 final size:3
Alignment explanation
Indices: 36746071--36746109 Score: 53
Period size: 3 Copynumber: 13.0 Consensus size: 3
36746061 ATAATAATAA
*
36746071 TAT TAT TAT TAT TAT TAT CT-T TAC TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT
36746110 ATTTATTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 1 0.03
3 30 0.94
4 1 0.03
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:36746100 original size:21 final size:21
Alignment explanation
Indices: 36746074--36746114 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
36746064 ATAATAATAT
*
36746074 TATTATTATTATTATCTTTAC
1 TATTATTATTATTATATTTAC
36746095 TATTATTATTATTATATTTA
1 TATTATTATTATTATATTTA
36746115 TTAATACTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (21 bp):
TATTATTATTATTATATTTAC
Found at i:36746810 original size:1 final size:1
Alignment explanation
Indices: 36746804--36746853 Score: 55
Period size: 1 Copynumber: 50.0 Consensus size: 1
36746794 AGAATATTTC
* * * * *
36746804 AAAAAAAAAAACAAAAAAAAACAAAAAAATAAAGAAAAAAAAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
36746854 GGAGAGGCCA
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.90, C:0.04, G:0.04, T:0.02
Consensus pattern (1 bp):
A
Found at i:36746821 original size:11 final size:11
Alignment explanation
Indices: 36746805--36746853 Score: 64
Period size: 11 Copynumber: 4.5 Consensus size: 11
36746795 GAATATTTCA
36746805 AAAAAAAAAAC
1 AAAAAAAAAAC
36746816 -AAAAAAAAAC
1 AAAAAAAAAAC
*
36746826 AAAAAAATAAAG
1 AAAAAAA-AAAC
*
36746838 AAAAAAAAAAG
1 AAAAAAAAAAC
36746849 AAAAA
1 AAAAA
36746854 GGAGAGGCCA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
10 10 0.29
11 15 0.43
12 10 0.29
ACGTcount: A:0.90, C:0.04, G:0.04, T:0.02
Consensus pattern (11 bp):
AAAAAAAAAAC
Found at i:36748858 original size:44 final size:43
Alignment explanation
Indices: 36748191--36748941 Score: 196
Period size: 44 Copynumber: 17.1 Consensus size: 43
36748181 TGGTGGAGCT
* * *
36748191 GGTTGAAGGCAACAGATCTTGCCTTCCTGCATTAACAGCGAAGCA
1 GGTTGAAGACAA-AGATCTTGCCTTCCTACATT-ATAGCGAAGCA
* * * * * * * **
36748236 GGTCGAAGACACAA-ACCTTGCC-TCTCT-CGGTTGTGGTGGAGTT
1 GGTTGAAGACA-AAGATCTTGCCTTC-CTAC-ATTATAGCGAAGCA
* *
36748279 GGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
1 GGTTGAAGACAA-AGATCTTGCCTTCCTACATT-ATAGCGAAGCA
* * * * * * * *
36748324 GGTCGAAGACACAA-ACCTTGCC-TCTCT-CGGTTGTGGTGGAGCT
1 GGTTGAAGACA-AAGATCTTGCCTTC-CTAC-ATTATAGCGAAGCA
* *
36748367 GGTTGAAGACAATAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
1 GGTTGAAGACAA-AGATCTTGCCTTCCTACATT-ATAGCGAAGCA
* * * * *
36748412 GGTCGAAGACACAA-ACCTTGCC-TCTCT-CGGTTGT-G-GTAGAGCT
1 GGTTGAAGACA-AAGATCTTGCCTTC-CTAC-ATTATAGCG-A-AGCA
* **
36748455 GGTTGAAGACAATAGATCTTGCCTTCCTGCATTGGCAGCGAAGCA
1 GGTTGAAGACAA-AGATCTTGCCTTCCTACATT-ATAGCGAAGCA
* * * * *
36748500 GGTCGAAGACACAA-ACCTTGCC-TCTCT-CGGTTGT-G-GTAGAGCT
1 GGTTGAAGACA-AAGATCTTGCCTTC-CTAC-ATTATAGCG-A-AGCA
* *
36748543 GGTTGAAGACAATAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
1 GGTTGAAGACAA-AGATCTTGCCTTCCTACATT-ATAGCGAAGCA
* * ** * * * * *
36748588 GGTCGAAGACACAA-ACCTTGCC-TCTCTAGGTTGTGGTGGAGCT
1 GGTTGAAGACA-AAGATCTTGCCTTC-CTACATTATAGCGAAGCA
* *
36748631 GGTTGAAGACAATAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
1 GGTTGAAGACAA-AGATCTTGCCTTCCTACATT-ATAGCGAAGCA
* * * * * * *
36748676 GGTTGAAGACACAA-ACCTTGCC-TCTCT-CGGTTGTGGTGGAGCT
1 GGTTGAAGACA-AAGATCTTGCCTTC-CTAC-ATTATAGCGAAGCA
* * *
36748719 GGTTGAAGACAGCAGATCTTGTCTTCCTACATTGACAGCGAAGCA
1 GGTTGAAGACA-AAGATCTTGCCTTCCTACATT-ATAGCGAAGCA
* * * * *
36748764 GGTCGAAGACACAA-ACCTTGCC-TCTCT-CGGTTGT-G-GTAGAGCT
1 GGTTGAAGACA-AAGATCTTGCCTTC-CTAC-ATTATAGCG-A-AGCA
36748807 GGTTGAAGACAATAGATCTTGCCTTCCTACATTAATAGCGAAGCA
1 GGTTGAAGACAA-AGATCTTGCCTTCCTACATT-ATAGCGAAGCA
* * * *
36748852 GG-TGAAGACACAA-ACCTTGCC-TCTCT-CGGTTGTAGC-AGAGCT
1 GGTTGAAGACA-AAGATCTTGCCTTC-CTAC-ATTATAGCGA-AGCA
* ** *
36748894 GGTTGAAGACAACAGATCTTGTCTTCCTGTATTGACAGCGAAGCA
1 GGTTGAAGACAA-AGATCTTGCCTTCCTACATT-ATAGCGAAGCA
36748939 GGT
1 GGT
36748942 CAAAGACACA
Statistics
Matches: 504, Mismatches: 127, Indels: 150
0.65 0.16 0.19
Matches are distributed among these distances:
41 4 0.01
42 25 0.05
43 147 0.29
44 171 0.34
45 141 0.28
46 13 0.03
47 3 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (43 bp):
GGTTGAAGACAAAGATCTTGCCTTCCTACATTATAGCGAAGCA
Found at i:36749135 original size:44 final size:44
Alignment explanation
Indices: 36748999--36749137 Score: 113
Period size: 44 Copynumber: 3.2 Consensus size: 44
36748989 GACAACAGAT
* * *
36748999 CTTGCCTTCCTGCCTTGACAACAAAACAGATCGAAGACACAAGC
1 CTTGCCTTCCTGCATTGACAACGAAGCAGATCGAAGACACAAGC
* * * ** * * * *
36749043 CTTGCCTCCCT-CGTTTG-TAGTGGAGCTGGTCGAAGACA-ACAGAT
1 CTTGCCTTCCTGC-ATTGACAACGAAGCAGATCGAAGACACA-AG-C
*
36749087 CTTGCCTTCCTGCATTGACAACGAAGCAGATCGAAGATACAAGC
1 CTTGCCTTCCTGCATTGACAACGAAGCAGATCGAAGACACAAGC
36749131 CTTGCCT
1 CTTGCCT
36749138 CCCTAAGCGG
Statistics
Matches: 68, Mismatches: 21, Indels: 12
0.67 0.21 0.12
Matches are distributed among these distances:
42 1 0.01
43 16 0.24
44 33 0.49
45 17 0.25
46 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (44 bp):
CTTGCCTTCCTGCATTGACAACGAAGCAGATCGAAGACACAAGC
Found at i:36749141 original size:88 final size:88
Alignment explanation
Indices: 36748106--36749138 Score: 1645
Period size: 88 Copynumber: 11.8 Consensus size: 88
36748096 AACAGATCAA
* * * *
36748106 TGAAGACAACAGATATTGCCTTCCTGAATTGACAGCGAAGTAGATCGAAGACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
36748171 CTCTCGGTTGTGGTGGAGCTGGT
66 CTCTCGGTTGTGGTGGAGCTGGT
* *
36748194 TGAAGGCAACAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
36748259 CTCTCGGTTGTGGTGGAGTTGGT
66 CTCTCGGTTGTGGTGGAGCTGGT
36748282 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
36748347 CTCTCGGTTGTGGTGGAGCTGGT
66 CTCTCGGTTGTGGTGGAGCTGGT
*
36748370 TGAAGACAATAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
36748435 CTCTCGGTTGTGGTAGAGCTGGT
66 CTCTCGGTTGTGGTGGAGCTGGT
* *
36748458 TGAAGACAATAGATCTTGCCTTCCTGCATTGGCAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
36748523 CTCTCGGTTGTGGTAGAGCTGGT
66 CTCTCGGTTGTGGTGGAGCTGGT
*
36748546 TGAAGACAATAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
36748611 CTCTAGGTTGTGGTGGAGCTGGT
66 CTCTCGGTTGTGGTGGAGCTGGT
* *
36748634 TGAAGACAATAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTTGAAGACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
36748699 CTCTCGGTTGTGGTGGAGCTGGT
66 CTCTCGGTTGTGGTGGAGCTGGT
* * *
36748722 TGAAGACAGCAGATCTTGTCTTCCTACATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
36748787 CTCTCGGTTGTGGTAGAGCTGGT
66 CTCTCGGTTGTGGTGGAGCTGGT
* * * *
36748810 TGAAGACAATAGATCTTGCCTTCCTACATTAATAGCGAAGCAGGT-GAAGACACAAACCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* **
36748874 CTCTCGGTTGTAGCAGAGCTGGT
66 CTCTCGGTTGTGGTGGAGCTGGT
* * * *
36748897 TGAAGACAACAGATCTTGTCTTCCTGTATTGACAGCGAAGCAGGTCAAAGACACAAACCTTACCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
*
36748962 CTCTCGGTTGCGGTGGAGCTGGT
66 CTCTCGGTTGTGGTGGAGCTGGT
* * * * * *
36748985 TGAAGACAACAGATCTTGCCTTCCTGCCTTGACAACAAAACAGATCGAAGACACAAGCCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
* * *
36749050 CCCTCGTTTGTAGTGGAGCTGGT
66 CTCTCGGTTGTGGTGGAGCTGGT
* * * * *
36749073 CGAAGACAACAGATCTTGCCTTCCTGCATTGACAACGAAGCAGATCGAAGATACAAGCCTTGCCT
1 TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
36749138 C
66 C
36749139 CCTAAGCGGT
Statistics
Matches: 882, Mismatches: 62, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
87 79 0.09
88 803 0.91
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (88 bp):
TGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCT
CTCTCGGTTGTGGTGGAGCTGGT
Found at i:36750966 original size:3 final size:3
Alignment explanation
Indices: 36750947--36751023 Score: 77
Period size: 3 Copynumber: 25.7 Consensus size: 3
36750937 TATTTTGTTC
* * * *
36750947 ATT ATT TTT AAT ATT ATT ATC ATT -TT CTTT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT
*
36750992 ATT ATT ATT ATCT -TT ACT ATT ATT ATT ATT AT
1 ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT AT
36751024 ATTTATTAAT
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
2 3 0.05
3 55 0.90
4 3 0.05
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:36750981 original size:30 final size:30
Alignment explanation
Indices: 36750938--36751023 Score: 109
Period size: 30 Copynumber: 2.9 Consensus size: 30
36750928 CATTTTCACT
* * * *
36750938 ATTTTGTTCATTATTTTTAATATTATTATC
1 ATTTTCTTTATTATTATTATTATTATTATC
*
36750968 ATTTTCTTTATTATTATTATTATTATTATT
1 ATTTTCTTTATTATTATTATTATTATTATC
* *
36750998 ATTATCTTTACTATTATTATTATTAT
1 ATTTTCTTTATTATTATTATTATTAT
36751024 ATTTATTAAT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.28, C:0.06, G:0.01, T:0.65
Consensus pattern (30 bp):
ATTTTCTTTATTATTATTATTATTATTATC
Found at i:36751416 original size:18 final size:19
Alignment explanation
Indices: 36751380--36751429 Score: 84
Period size: 18 Copynumber: 2.7 Consensus size: 19
36751370 TTATAACTAT
36751380 TTATATATATATCATCTTA
1 TTATATATATATCATCTTA
*
36751399 TTATATATTTAT-ATCTTA
1 TTATATATATATCATCTTA
36751417 TTATATATATATC
1 TTATATATATATC
36751430 TATATATCTC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 17 0.61
19 11 0.39
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (19 bp):
TTATATATATATCATCTTA
Found at i:36751488 original size:4 final size:4
Alignment explanation
Indices: 36751481--36751507 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
36751471 ACGTTTTGTT
36751481 ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATA
36751508 TACATCTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.52, C:0.22, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:36769502 original size:14 final size:14
Alignment explanation
Indices: 36769483--36769514 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
36769473 TCCAACCACC
36769483 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
36769497 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
36769511 GGGC
1 GGGC
36769515 TAAATGACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.16, G:0.47, T:0.31
Consensus pattern (14 bp):
GGGCCAGTTTGGTT
Found at i:36774616 original size:14 final size:14
Alignment explanation
Indices: 36774597--36774628 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
36774587 TCCAACCACC
36774597 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
36774611 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
36774625 GGGC
1 GGGC
36774629 TAAATGACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.16, G:0.47, T:0.31
Consensus pattern (14 bp):
GGGCCAGTTTGGTT
Found at i:36790355 original size:21 final size:21
Alignment explanation
Indices: 36790313--36790358 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
36790303 ACTTCCTTCA
* *
36790313 GTGTCGTGACACAACTAAAGG
1 GTGTCGCGACACAACCAAAGG
* *
36790334 GTGTCGCGACACAGCCAGAGG
1 GTGTCGCGACACAACCAAAGG
36790355 GTGT
1 GTGT
36790359 TGCAACATAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.26, C:0.22, G:0.35, T:0.17
Consensus pattern (21 bp):
GTGTCGCGACACAACCAAAGG
Found at i:36790370 original size:21 final size:21
Alignment explanation
Indices: 36790331--36790370 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
36790321 ACACAACTAA
*
36790331 AGGGTGTCGCGACACAGCCAG
1 AGGGTGTCGCAACACAGCCAG
* *
36790352 AGGGTGTTGCAACATAGCC
1 AGGGTGTCGCAACACAGCC
36790371 CTAAAATCAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.25, G:0.35, T:0.15
Consensus pattern (21 bp):
AGGGTGTCGCAACACAGCCAG
Found at i:36794116 original size:23 final size:23
Alignment explanation
Indices: 36794090--36794150 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
36794080 CACAAAGAAC
36794090 GAAATAGAAAACTAAACTTAAAGG
1 GAAATAG-AAACTAAACTTAAAGG
* * * *
36794114 AAAATATAAATTACACTTAAAGG
1 GAAATAGAAACTAAACTTAAAGG
*
36794137 GAAATTGAAACTAA
1 GAAATAGAAACTAA
36794151 GTAAAAACTA
Statistics
Matches: 28, Mismatches: 9, Indels: 1
0.74 0.24 0.03
Matches are distributed among these distances:
23 23 0.82
24 5 0.18
ACGTcount: A:0.57, C:0.08, G:0.13, T:0.21
Consensus pattern (23 bp):
GAAATAGAAACTAAACTTAAAGG
Found at i:36794175 original size:17 final size:16
Alignment explanation
Indices: 36794144--36794190 Score: 58
Period size: 17 Copynumber: 2.9 Consensus size: 16
36794134 AGGGAAATTG
*
36794144 AAACTAAGTAAAAACT
1 AAACTAAATAAAAACT
36794160 AAACTAAATGAAAAACT
1 AAACTAAAT-AAAAACT
* *
36794177 GAACTGAATAAAAA
1 AAACTAAATAAAAA
36794191 ATTACCCATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
16 13 0.48
17 14 0.52
ACGTcount: A:0.64, C:0.11, G:0.09, T:0.17
Consensus pattern (16 bp):
AAACTAAATAAAAACT
Found at i:36798159 original size:13 final size:13
Alignment explanation
Indices: 36798141--36798166 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36798131 GAGTTTACTG
36798141 AAATTATTATAAT
1 AAATTATTATAAT
36798154 AAATTATTATAAT
1 AAATTATTATAAT
36798167 TATGATTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
AAATTATTATAAT
Found at i:36809386 original size:16 final size:16
Alignment explanation
Indices: 36809351--36809398 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
36809341 ATAAAATTTA
36809351 ATATTAAATTAAA-A-T
1 ATATTAAA-TAAATATT
36809366 ATATTAAATAAATATT
1 ATATTAAATAAATATT
* *
36809382 ATATTAATTTAATATT
1 ATATTAAATAAATATT
36809398 A
1 A
36809399 AAGTTATAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
14 4 0.14
15 9 0.31
16 16 0.55
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
ATATTAAATAAATATT
Found at i:36816004 original size:2 final size:2
Alignment explanation
Indices: 36815999--36816027 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
36815989 AGTATATATA
36815999 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
36816028 AAACAAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:36817123 original size:27 final size:27
Alignment explanation
Indices: 36817063--36817138 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
36817053 TGGAAACTAA
* * *
36817063 GGTAGTCCATCGGGATAGTAAACACGG
1 GGTAGTTCAACGGGACAGTAAACACGG
**
36817090 GGTAGTTCAACGGGACAGTAAATGCGG
1 GGTAGTTCAACGGGACAGTAAACACGG
*
36817117 GGTAGTTC-ACTGGGACAATAAA
1 GGTAGTTCAAC-GGGACAGTAAA
36817139 AAACAAGTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 2 0.05
27 40 0.95
ACGTcount: A:0.32, C:0.16, G:0.33, T:0.20
Consensus pattern (27 bp):
GGTAGTTCAACGGGACAGTAAACACGG
Found at i:36819536 original size:13 final size:14
Alignment explanation
Indices: 36819518--36819546 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
36819508 AAAATTGCTT
36819518 AAAAATCAAG-CAA
1 AAAAATCAAGTCAA
36819531 AAAAATCAAGTCAA
1 AAAAATCAAGTCAA
36819545 AA
1 AA
36819547 GCCACTAAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.69, C:0.14, G:0.07, T:0.10
Consensus pattern (14 bp):
AAAAATCAAGTCAA
Found at i:36830201 original size:18 final size:20
Alignment explanation
Indices: 36830178--36830215 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
36830168 TTTAAGTTTA
36830178 TATTTTT-T-TATATTATGT
1 TATTTTTATATATATTATGT
36830196 TATTTTTATATATATTATGT
1 TATTTTTATATATATTATGT
36830216 ATGTAACACC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.39
19 1 0.06
20 10 0.56
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.68
Consensus pattern (20 bp):
TATTTTTATATATATTATGT
Found at i:36830213 original size:15 final size:16
Alignment explanation
Indices: 36830175--36830213 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
36830165 ATTTTTAAGT
36830175 TTATATT-TTTTTATA
1 TTATATTATTTTTATA
*
36830190 TTATGTTATTTTTATA
1 TTATATTATTTTTATA
36830206 -TATATTAT
1 TTATATTAT
36830214 GTATGTAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (16 bp):
TTATATTATTTTTATA
Found at i:36830744 original size:28 final size:27
Alignment explanation
Indices: 36830705--36830763 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 27
36830695 AAATTACCTT
*
36830705 TTTATTTATTATATTTACTATAGTTTTA
1 TTTATTTATTATATTTACAATA-TTTTA
* *
36830733 TTTATTTGTTATATTTACAATATTTTT
1 TTTATTTATTATATTTACAATATTTTA
36830760 TTTA
1 TTTA
36830764 CAAATACTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 8 0.29
28 20 0.71
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.66
Consensus pattern (27 bp):
TTTATTTATTATATTTACAATATTTTA
Found at i:36831102 original size:14 final size:13
Alignment explanation
Indices: 36831069--36831103 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
36831059 GATTATTGTT
*
36831069 TTTATTTCGTTTA
1 TTTATTTTGTTTA
36831082 TTTATTTTGTTTA
1 TTTATTTTGTTTA
36831095 TATTATTTT
1 T-TTATTTT
36831104 TTATGCCATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 13 0.65
14 7 0.35
ACGTcount: A:0.17, C:0.03, G:0.06, T:0.74
Consensus pattern (13 bp):
TTTATTTTGTTTA
Found at i:36843238 original size:44 final size:44
Alignment explanation
Indices: 36842931--36843626 Score: 154
Period size: 44 Copynumber: 15.8 Consensus size: 44
36842921 TGGAGAAGGT
* *
36842931 TGAAGATCTTATCTCCCTAAACAGTAGTGGAGCAGATTAAAGACG
1 TGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGA-G
* *
36842976 -G-CGAATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTG-AGCCA-
1 TGAAG-ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGA-TTGAAG--AG
** * * * ** *
36843020 CCAAG-TCTTGTCTCCCTGAGCAGCAGTGGAAAAGGTTGAAGAG
1 TGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGAG
* *
36843063 TGTAGATCTTATCTCCCTAAAGCAGTAGTGGAGCAGATCGAAGACG
1 TGAAGATCTTATCTCCCT-AAGCAGTAGTGGAGCAGATTGAAGA-G
* * *
36843109 -G-CGAATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCA-
1 TGAAG-ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAG--AG
** * * * * * *
36843153 CCAAG-CCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAG
1 TGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGAG
*
36843196 TGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACG
1 TGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGA-G
* * * *
36843241 -G-CGAGTCTTATCTTTCC-AAG-A-TAGTGGGAAGCAAATTTAAGCCA-
1 TGAAGA-TCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAG--AG
** * * * * * *
36843285 CCAAG-CCTTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGAT
1 TGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGAG
* * *
36843328 TGTAGATCTTATCTCCCTAAGCAGCAGTGGAGCAGATCGAAGACG
1 TGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGA-G
* *
36843373 -GCAA-ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCATATTTG-AGCCA-
1 TG-AAGATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGA-TTGAAG--AG
** * * * * ** *
36843417 CCAAG-CCTTGTCTCCCTGAGCAGCAGTGGAAAAGGTTGAAGAG
1 TGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGAG
* * * *
36843460 TGTAGATCTTATCTCTCTAAAGTAGTAGTGGAGCAGATCGAAGACG
1 TGAAGATCTTATCTCCCT-AAGCAGTAGTGGAGCAGATTGAAGA-G
* * *
36843506 -G-CGAATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCA-
1 TGAAG-ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAG--AG
** * * * * * *
36843550 CCAAG-CCTTGTCTCCCTAAGCAGTAGCGGAGAAGGTTGAAG-T
1 TGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGAG
*
36843592 TTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
1 TGA-AGATCTTATCTCCCTAAGCAGTAGTGGAGCA
36843627 TATCGAAAAC
Statistics
Matches: 455, Mismatches: 120, Indels: 153
0.62 0.16 0.21
Matches are distributed among these distances:
42 24 0.05
43 50 0.11
44 264 0.58
45 85 0.19
46 32 0.07
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.25
Consensus pattern (44 bp):
TGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGAG
Found at i:36843280 original size:132 final size:132
Alignment explanation
Indices: 36842893--36843700 Score: 1227
Period size: 132 Copynumber: 6.2 Consensus size: 132
36842883 ACCGGTGAAA
36842893 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGG-T------TGAAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAGTGAAGATCTTATCTCCCTAA
* ** *
36842951 ACAGTAGTGGAGCAGATTAAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTGA
66 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
36843016 GC
131 GC
* * *
36843018 CACCAAGTCTTGTCTCCCTGAGCAGCAGTGGAAAAGGTTGAAGAGTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAGTGAAGATCTTATCTCCCT-A
36843083 AGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTA
65 AGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTA
36843148 AGC
130 AGC
36843151 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAGTGAAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAGTGAAGATCTTATCTCCCTAA
* *
36843216 GCAGTAGTGGAGCAGATCGAAGACGGCGAGTCTTATCTTTCCAAGATAGTGGGAAGCAAATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
36843281 GC
131 GC
* * *
36843283 CACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAGTGAAGATCTTATCTCCCTAA
* * * *
36843348 GCAGCAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCATATTTGA
66 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
36843413 GC
131 GC
* * *
36843415 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAAAAGGTTGAAGAGTGTAGATCTTATCTCTCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAGTGAAGATCTTATCTCCCT-A
*
36843480 AGTAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTA
65 AGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTA
36843545 AGC
130 AGC
* * * * *
36843548 CACCAAGCCTTGTCTCCCTAAGCAGTAGCGGAGAAGGTTGAAG-TTTATAGATCTTATCTCCCTA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAGTGA-AGATCTTATCTCCCTA
* * * *
36843612 AGCAGTAGTGGAGCATATCGAAAACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTTA
65 AGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTA
**
36843677 ATT
130 AGC
** *
36843680 CACCAAATCTTATCTCCCTGA
1 CACCAAGCCTTGTCTCCCTGA
36843701 AATTACAGTG
Statistics
Matches: 625, Mismatches: 48, Indels: 13
0.91 0.07 0.02
Matches are distributed among these distances:
125 35 0.06
126 1 0.00
132 347 0.56
133 242 0.39
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (132 bp):
CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAGTGAAGATCTTATCTCCCTAA
GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
GC
Found at i:36843489 original size:265 final size:264
Alignment explanation
Indices: 36842893--36843700 Score: 1281
Period size: 265 Copynumber: 3.1 Consensus size: 264
36842883 ACCGGTGAAA
36842893 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTT---GA---AGATCTTATCTCCCTAAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAGTGAGATCTTATCTCCCTAAA
** *
36842952 -CAGTAGTGGAGCAGATTAAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTGA
66 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
* * * *
36843016 GCCACCAAGTCTTGTCTCCCTGAGCAGCAGTGGAAAAGGTTGAAGAGTGTAGATCTTATCTCCCT
131 GCCACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCT
*
36843081 AAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATT
196 -AAGCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATT
36843146 TAAGC
260 TAAGC
36843151 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAGTGAAGATCTTATCTCCCT-A
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAGTG-AGATCTTATCTCCCTAA
* *
36843215 AGCAGTAGTGGAGCAGATCGAAGACGGCGAGTCTTATCTTTCCAAGATAGTGGGAAGCAAATTTA
65 AGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTA
36843280 AGCCACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCC
130 AGCCACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCC
* *
36843345 TAAGCAGCAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCATATT
195 TAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATT
*
36843410 TGAGC
260 TAAGC
* *
36843415 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAAAAGGTTGAAGAGTGTAGATCTTATCTCTCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAGTG-AGATCTTATCTCCCTAA
*
36843480 AGTAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTA
65 AGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTA
* * * *
36843545 AGCCACCAAGCCTTGTCTCCCTAAGCAGTAGCGGAGAAGGTTGAAGTTTATAGATCTTATCTCCC
130 AGCCACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCC
* * *
36843610 TAAGCAGTAGTGGAGCATATCGAAAACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATT
195 TAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATT
**
36843675 TAATT
260 TAAGC
** *
36843680 CACCAAATCTTATCTCCCTGA
1 CACCAAGCCTTGTCTCCCTGA
36843701 AATTACAGTG
Statistics
Matches: 507, Mismatches: 34, Indels: 11
0.92 0.06 0.02
Matches are distributed among these distances:
258 39 0.08
261 2 0.00
264 127 0.25
265 339 0.67
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (264 bp):
CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAGTGAGATCTTATCTCCCTAAA
GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
GCCACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCT
AAGCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTT
AAGC
Found at i:36843667 original size:397 final size:390
Alignment explanation
Indices: 36842893--36843700 Score: 1303
Period size: 397 Copynumber: 2.1 Consensus size: 390
36842883 ACCGGTGAAA
*
36842893 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATCTTATCTCCCTAAACAGTAG
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATCTTATCTCCCTAAACAGCAG
* *
36842958 TGGAGCAGATTAAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTGAGCCACCA
66 TGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTGAGCCACCA
*
36843023 AGTCTTGTCTCCCTGAGCAGCAGTGGAAAAGGTTGAAGAGTGTAGATCTTATCTCCCTAAAGCAG
131 AGCCTTGTCTCCCTGAGCAGCAGTGGAAAAGGTTGAAGAGTGTAGATCTTATCTCCCTAAAGCAG
36843088 TAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
196 TAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
* *
36843153 CCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGAGTGAAGATCTTATCTCCCTAAGC
261 CCAAGCCTTGTCTCCCTAAGCAGCAGCGGAGAAGGTTGAAGAGTGAAGATCTTATCTCCCTAAGC
* * *
36843218 AGTAGTGGAGCAGATCGAAGACGGCGAGTCTTATCTTTCCAAGATAGTGGGAAGCAAATTTAAGC
326 AGTAGTGGAGCAGATCGAAAACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAAATTTAAGC
*
36843283 CACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTT---GA----AGATCTTATCTCCCTAA
* * *
36843348 GCAGCAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCATATTTGA
59 ACAGCAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTGA
*
36843413 GCCACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAAAAGGTTGAAGAGTGTAGATCTTATCTCTCT
124 GCCACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAAAAGGTTGAAGAGTGTAGATCTTATCTCCCT
*
36843478 AAAGTAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATT
189 AAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATT
* * *
36843543 TAAGCCACCAAGCCTTGTCTCCCTAAGCAGTAGCGGAGAAGGTTGAAG-TTTATAGATCTTATCT
254 TAAGCCACCAAGCCTTGTCTCCCTAAGCAGCAGCGGAGAAGGTTGAAGAGTGA-AGATCTTATCT
* * *
36843607 CCCTAAGCAGTAGTGGAGCATATCGAAAACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGTAG
318 CCCTAAGCAGTAGTGGAGCAGATCGAAAACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAA
**
36843672 ATTTAATT
383 ATTTAAGC
** *
36843680 CACCAAATCTTATCTCCCTGA
1 CACCAAGCCTTGTCTCCCTGA
36843701 AATTACAGTG
Statistics
Matches: 384, Mismatches: 26, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
390 38 0.10
393 2 0.01
396 2 0.01
397 342 0.89
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (390 bp):
CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATCTTATCTCCCTAAACAGCAG
TGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTGAGCCACCA
AGCCTTGTCTCCCTGAGCAGCAGTGGAAAAGGTTGAAGAGTGTAGATCTTATCTCCCTAAAGCAG
TAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
CCAAGCCTTGTCTCCCTAAGCAGCAGCGGAGAAGGTTGAAGAGTGAAGATCTTATCTCCCTAAGC
AGTAGTGGAGCAGATCGAAAACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAAATTTAAGC
Found at i:36845605 original size:13 final size:14
Alignment explanation
Indices: 36845582--36845618 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
36845572 TTATTGTTTT
36845582 TTTTCGTTTAT-TTA
1 TTTT-GTTTATATTA
36845596 TTTTGTTTATATTA
1 TTTTGTTTATATTA
36845610 TTTT-TTTAT
1 TTTTGTTTAT
36845619 GCCATTAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.16, C:0.03, G:0.05, T:0.76
Consensus pattern (14 bp):
TTTTGTTTATATTA
Found at i:36848819 original size:105 final size:105
Alignment explanation
Indices: 36848636--36849580 Score: 1103
Period size: 105 Copynumber: 9.1 Consensus size: 105
36848626 ACCAGGCTAC
* * * * *
36848636 CACTTTTCGGTAGTCTGGACAATCTACGTAAGCT--TGTG--GTTCAATAGTTTGTCCGCTAATA
1 CACTTTTCGATAGTCTGGACAATCTAGGTAAGCTAGAGTGCCGTTCAGTAGTTTGTCTGCTAATA
*
36848697 TTTCTTACAGAATTTGGGGTACTTTCTTTCATTGAAGGGA
66 TTTCTTACAGCATTTGGGGTACTTTCTTTCATTGAAGGGA
* *** * *
36848737 CACTTTTCGATCGTCTGGATGGTCTAGGTAAGCTAGAGTGCCGTTTAGTAGTTTGTCTGGTAATA
1 CACTTTTCGATAGTCTGGACAATCTAGGTAAGCTAGAGTGCCGTTCAGTAGTTTGTCTGCTAATA
* *
36848802 TTCCTAACAGCATTTGGGGTACTTTCTTTCATTGAAGGGA
66 TTTCTTACAGCATTTGGGGTACTTTCTTTCATTGAAGGGA
* * * * * * *
36848842 CCCTTCTCAATAGTTTGGACGATCTAGGTAAGCTAGAGTGCCTTTCAGTAGTTTGTCTGCTTATA
1 CACTTTTCGATAGTCTGGACAATCTAGGTAAGCTAGAGTGCCGTTCAGTAGTTTGTCTGCTAATA
*
36848907 TTTCTTACAGCATTTTGGGTACTTTCTTTCATTGAAGGGA
66 TTTCTTACAGCATTTGGGGTACTTTCTTTCATTGAAGGGA
* * * * * * *
36848947 CACTTTTCAATAGTTTGGACAACCTATGTAAGCTAAAGTGCCTTTCAGTAGTTTGTCTGCTCATA
1 CACTTTTCGATAGTCTGGACAATCTAGGTAAGCTAGAGTGCCGTTCAGTAGTTTGTCTGCTAATA
* *
36849012 TTTCTTACAGCATTTTGGGTACTTTCTTTAATTGAAGGGA
66 TTTCTTACAGCATTTGGGGTACTTTCTTTCATTGAAGGGA
* * * * *
36849052 CACTTATCAATAGTTTGGACGATCTAGGTAAGCTAAAGTGCCGTTCAGTAGTTTGTCTGCTAATA
1 CACTTTTCGATAGTCTGGACAATCTAGGTAAGCTAGAGTGCCGTTCAGTAGTTTGTCTGCTAATA
**
36849117 TTTCTTACAGCATTTGGGGTACTTTCTTTCATTGAACAGA
66 TTTCTTACAGCATTTGGGGTACTTTCTTTCATTGAAGGGA
* ** * * * *
36849157 CAGTTTTCGATAGTCCAGACAATCTAGGTAAGCTAGAGCGCGGTTCGGTAGTTTGTCTGCAAATA
1 CACTTTTCGATAGTCTGGACAATCTAGGTAAGCTAGAGTGCCGTTCAGTAGTTTGTCTGCTAATA
* ** * ** *
36849222 TCTCGAACAGCATTTTGGGTACTTTCTTTTGTTGAAGAGA
66 TTTCTTACAGCATTTGGGGTACTTTCTTTCATTGAAGGGA
* ** * * * * *
36849262 CGCTTTTCGATAGTCCAGAGAGTCTAGGTAAGCTA-TGTG--GTTTAATAGTTTGTCTGCTAATA
1 CACTTTTCGATAGTCTGGACAATCTAGGTAAGCTAGAGTGCCGTTCAGTAGTTTGTCTGCTAATA
* * * * * *
36849324 TTTCTTTCAGTATTTTGAGTACTTTCTTTCATTGAGGGGG
66 TTTCTTACAGCATTTGGGGTACTTTCTTTCATTGAAGGGA
* * * **
36849364 CACTTTTTGATAGTCTGGACAATCTAGGCAACCTAGAGTGTGGTTCAGTAGTTTGTCTGCTAATA
1 CACTTTTCGATAGTCTGGACAATCTAGGTAAGCTAGAGTGCCGTTCAGTAGTTTGTCTGCTAATA
*
36849429 TTTCTTACAGCATTTGGGGTACTTTGTTTCATTGAAGGGA
66 TTTCTTACAGCATTTGGGGTACTTTCTTTCATTGAAGGGA
* * ** **
36849469 CAATTATCGATAGTCCAGACAATCTAGGTAAGCTAGAGTGTGGTTCAGTAGTTTGTCTGCTAATA
1 CACTTTTCGATAGTCTGGACAATCTAGGTAAGCTAGAGTGCCGTTCAGTAGTTTGTCTGCTAATA
* * * *
36849534 TTTCTTACTGCATTAGGGGTACTTTCTATCGTTGAAGGGA
66 TTTCTTACAGCATTTGGGGTACTTTCTTTCATTGAAGGGA
36849574 CACTTTT
1 CACTTTT
36849581 ATTGACCTTG
Statistics
Matches: 719, Mismatches: 118, Indels: 10
0.85 0.14 0.01
Matches are distributed among these distances:
101 28 0.04
102 75 0.10
103 6 0.01
104 2 0.00
105 608 0.85
ACGTcount: A:0.23, C:0.16, G:0.22, T:0.38
Consensus pattern (105 bp):
CACTTTTCGATAGTCTGGACAATCTAGGTAAGCTAGAGTGCCGTTCAGTAGTTTGTCTGCTAATA
TTTCTTACAGCATTTGGGGTACTTTCTTTCATTGAAGGGA
Found at i:36849842 original size:3 final size:3
Alignment explanation
Indices: 36849834--36849868 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
36849824 AGAGTAATAC
36849834 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
36849869 CACACTTTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:36857813 original size:21 final size:24
Alignment explanation
Indices: 36857789--36857831 Score: 65
Period size: 21 Copynumber: 1.9 Consensus size: 24
36857779 TCGGACTTAT
36857789 TTATAA-TGTTTT-A-AATTGTCA
1 TTATAATTGTTTTGACAATTGTCA
36857810 TTATAATTGTTTTGACAATTGT
1 TTATAATTGTTTTGACAATTGT
36857832 TTGATAAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.32
22 6 0.32
23 1 0.05
24 6 0.32
ACGTcount: A:0.30, C:0.05, G:0.12, T:0.53
Consensus pattern (24 bp):
TTATAATTGTTTTGACAATTGTCA
Found at i:36862440 original size:23 final size:23
Alignment explanation
Indices: 36862414--36862479 Score: 105
Period size: 23 Copynumber: 2.9 Consensus size: 23
36862404 GTTATTGATC
* *
36862414 AGTGGTAGCTACGGCTACATTAT
1 AGTGGTAGCTTCGGCTACATTAG
36862437 AGTGGTAGCTTCGGCTACATTAG
1 AGTGGTAGCTTCGGCTACATTAG
*
36862460 AGTGGTAGCTTTGGCTACAT
1 AGTGGTAGCTTCGGCTACAT
36862480 ATCAATGTGG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.32
Consensus pattern (23 bp):
AGTGGTAGCTTCGGCTACATTAG
Found at i:36862736 original size:23 final size:25
Alignment explanation
Indices: 36862690--36862737 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 25
36862680 GAAATTGCTA
* *
36862690 AGAAATGTTTGATTAGTTATATGAG
1 AGAAATGTTTAATTAGTTAAATGAG
36862715 AGAAATG-TTAATT-GTTAAATGAG
1 AGAAATGTTTAATTAGTTAAATGAG
36862738 TATTTATAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 9 0.43
24 5 0.24
25 7 0.33
ACGTcount: A:0.40, C:0.00, G:0.23, T:0.38
Consensus pattern (25 bp):
AGAAATGTTTAATTAGTTAAATGAG
Found at i:36869122 original size:42 final size:41
Alignment explanation
Indices: 36869062--36869184 Score: 140
Period size: 42 Copynumber: 3.0 Consensus size: 41
36869052 GAGGTTCAAA
* * *
36869062 TTAACCC-TATTGGGTTTCCGTTTAGCTCTTTTGAGCTTCAG
1 TTAACCCTTA-TGGGTTTCCATTTAGCTCTTATGAGCTTCAC
* *
36869103 TCTAACCCTTATGGGTTTCCATTCAGCTCTTATGAGCTTCCC
1 T-TAACCCTTATGGGTTTCCATTTAGCTCTTATGAGCTTCAC
* * *
36869145 TTCAATCCTTATGGGTTTCCATTTAGCACTTATGTGCTTC
1 TT-AACCCTTATGGGTTTCCATTTAGCTCTTATGAGCTTC
36869185 TGTGTAGCCT
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
41 2 0.03
42 66 0.94
43 2 0.03
ACGTcount: A:0.16, C:0.25, G:0.16, T:0.42
Consensus pattern (41 bp):
TTAACCCTTATGGGTTTCCATTTAGCTCTTATGAGCTTCAC
Found at i:36869136 original size:21 final size:21
Alignment explanation
Indices: 36869110--36869178 Score: 68
Period size: 21 Copynumber: 3.3 Consensus size: 21
36869100 CAGTCTAACC
36869110 CTTATGGGTTTCCATTCAGCT
1 CTTATGGGTTTCCATTCAGCT
* * * *
36869131 CTTATGAGCTTCCCTTCA-AT
1 CTTATGGGTTTCCATTCAGCT
* *
36869151 CCTTATGGGTTTCCATTTAGCA
1 -CTTATGGGTTTCCATTCAGCT
36869173 CTTATG
1 CTTATG
36869179 TGCTTCTGTG
Statistics
Matches: 36, Mismatches: 10, Indels: 4
0.72 0.20 0.08
Matches are distributed among these distances:
20 1 0.03
21 35 0.97
ACGTcount: A:0.17, C:0.25, G:0.16, T:0.42
Consensus pattern (21 bp):
CTTATGGGTTTCCATTCAGCT
Found at i:36872572 original size:44 final size:44
Alignment explanation
Indices: 36872508--36872628 Score: 131
Period size: 44 Copynumber: 2.8 Consensus size: 44
36872498 CAAGAATGTC
* * *
36872508 ATAGCATCTTTCAG-CTATGGTATTAGTCTTGTTTA-CCATGAT-TT
1 ATAGCATCTTTCAGTC-ATGGTATTACTCGT-TTTATCC-TGATATA
* *
36872552 GTAGCATCTTTCAGTCATGGTCTTACTCGTTTTATCCTGATATA
1 ATAGCATCTTTCAGTCATGGTATTACTCGTTTTATCCTGATATA
* *
36872596 ATAGCATCTTTCAGTCATGGTCTTACTCATTTT
1 ATAGCATCTTTCAGTCATGGTATTACTCGTTTT
36872629 CAATGTATAG
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
43 8 0.12
44 58 0.87
45 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.15, T:0.45
Consensus pattern (44 bp):
ATAGCATCTTTCAGTCATGGTATTACTCGTTTTATCCTGATATA
Found at i:36875357 original size:27 final size:27
Alignment explanation
Indices: 36875327--36875413 Score: 102
Period size: 27 Copynumber: 3.2 Consensus size: 27
36875317 TGGCAACTAA
*
36875327 GATAGTCAACTGAGACAGTAAACATGG
1 GATAGTCCACTGAGACAGTAAACATGG
* * *
36875354 GATAGTCCATTGGGACAGTAAACACGG
1 GATAGTCCACTGAGACAGTAAACATGG
* * * *
36875381 AATATTCCACCGAGATAGTAAACATGG
1 GATAGTCCACTGAGACAGTAAACATGG
36875408 GATAGT
1 GATAGT
36875414 TTGTCGGGAC
Statistics
Matches: 47, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.21
Consensus pattern (27 bp):
GATAGTCCACTGAGACAGTAAACATGG
Found at i:36877762 original size:31 final size:31
Alignment explanation
Indices: 36877724--36877782 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
36877714 ACAGGGCCGT
** *
36877724 GTATCTAAACTGTGTCACAGACTGAAGCAAC
1 GTATCTAAACCATGTCACAGACTAAAGCAAC
36877755 GTATCTAAACCATGTCACAGACTAAAGC
1 GTATCTAAACCATGTCACAGACTAAAGC
36877783 TGTGCAAAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.22
Consensus pattern (31 bp):
GTATCTAAACCATGTCACAGACTAAAGCAAC
Found at i:36887842 original size:18 final size:18
Alignment explanation
Indices: 36887819--36887853 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
36887809 AAAGAAAATA
*
36887819 AAGGTGAAATTTTCATAT
1 AAGGTGAAAGTTTCATAT
*
36887837 AAGGTGATAGTTTCATA
1 AAGGTGAAAGTTTCATA
36887854 GGGTTGTGTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.06, G:0.20, T:0.37
Consensus pattern (18 bp):
AAGGTGAAAGTTTCATAT
Found at i:36890560 original size:21 final size:21
Alignment explanation
Indices: 36890534--36890579 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
36890524 ATCAATGGCA
*
36890534 AGTTCGGATGATGGTAATTCT
1 AGTTCGAATGATGGTAATTCT
36890555 AGTTCGAATGATGGTAATTCT
1 AGTTCGAATGATGGTAATTCT
36890576 AGTT
1 AGTT
36890580 TAGATCAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.26, C:0.09, G:0.26, T:0.39
Consensus pattern (21 bp):
AGTTCGAATGATGGTAATTCT
Found at i:36893024 original size:89 final size:90
Alignment explanation
Indices: 36892867--36893079 Score: 227
Period size: 89 Copynumber: 2.4 Consensus size: 90
36892857 TGATTGAGAA
* * * * *
36892867 ACAAAAAAGACCATGATTGAAAGATATCATGGCATTTTACCCAAAATGAGTAAGACCATAGTTGA
1 ACAAATAAGACCATAATTGAAAGATATTATGGCATTTAAACCAAAATGAGTAAGACCATAGTTGA
*
36892932 AAGATACTATGGCATTAAACCGTAAT
66 AAGATACTAGGGCATTAAACC-TAAT
* * *
36892958 -C-AATAAGACCATAACTGAAAGATATTATGGCA-TTAAACCATATATGTA-TAAGACCATATTT
1 ACAAATAAGACCATAATTGAAAGATATTATGGCATTTAAACCA-AAATG-AGTAAGACCATAGTT
* * * *
36893019 GAAAGATATTGGGGTATTAAATCTAAT
64 GAAAGATACTAGGGCATTAAACCTAAT
* * *
36893046 ACAAATAAGATCATAGTTGAAAGATACTATGGCA
1 ACAAATAAGACCATAATTGAAAGATATTATGGCA
36893080 CTACTTCGGG
Statistics
Matches: 101, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
88 10 0.10
89 62 0.61
90 29 0.29
ACGTcount: A:0.44, C:0.13, G:0.16, T:0.27
Consensus pattern (90 bp):
ACAAATAAGACCATAATTGAAAGATATTATGGCATTTAAACCAAAATGAGTAAGACCATAGTTGA
AAGATACTAGGGCATTAAACCTAAT
Found at i:36893038 original size:45 final size:44
Alignment explanation
Indices: 36892873--36893079 Score: 182
Period size: 45 Copynumber: 4.6 Consensus size: 44
36892863 AGAAACAAAA
* * * * * * *
36892873 AAGACCATGATTGAAAGATATCATGGCATTTTACCCAAAATGAGT
1 AAGACCATAATTGAAAGATATTATGGCA-TTAAACCATAATCAAT
* * *
36892918 AAGACCATAGTTGAAAGATACTATGGCATTAAACCGTAATCAAT
1 AAGACCATAATTGAAAGATATTATGGCATTAAACCATAATCAAT
* **
36892962 AAGACCATAACTGAAAGATATTATGGCATTAAACCATATATGTAT
1 AAGACCATAATTGAAAGATATTATGGCATTAAACCATA-ATCAAT
* ** * *
36893007 AAGACCATATTTGAAAGATATTGGGGTATTAAATC-TAATACAAAT
1 AAGACCATAATTGAAAGATATTATGGCATTAAACCATAAT-C-AAT
* * *
36893052 AAGATCATAGTTGAAAGATACTATGGCA
1 AAGACCATAATTGAAAGATATTATGGCA
36893080 CTACTTCGGG
Statistics
Matches: 129, Mismatches: 30, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
43 2 0.02
44 46 0.36
45 81 0.63
ACGTcount: A:0.43, C:0.13, G:0.16, T:0.28
Consensus pattern (44 bp):
AAGACCATAATTGAAAGATATTATGGCATTAAACCATAATCAAT
Found at i:36900207 original size:4 final size:4
Alignment explanation
Indices: 36900193--36900227 Score: 61
Period size: 4 Copynumber: 8.8 Consensus size: 4
36900183 ATCTTTTCAT
*
36900193 GTTA ATTA GTTA GTTA GTTA GTTA GTTA GTTA GTT
1 GTTA GTTA GTTA GTTA GTTA GTTA GTTA GTTA GTT
36900228 GATAAGTTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (4 bp):
GTTA
Found at i:36900379 original size:27 final size:26
Alignment explanation
Indices: 36900355--36900405 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
36900345 TTACTTTTGA
36900355 GTTAATAAAA-TTCTCTTTGAGTTTTCG
1 GTTAA-AAAATTTCT-TTTGAGTTTTCG
*
36900382 TTTAAAAAATTTCTTTTGAGTTTT
1 GTTAAAAAATTTCTTTTGAGTTTT
36900406 TTTAGAAGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.27, C:0.08, G:0.12, T:0.53
Consensus pattern (26 bp):
GTTAAAAAATTTCTTTTGAGTTTTCG
Found at i:36901966 original size:20 final size:20
Alignment explanation
Indices: 36901937--36901976 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
36901927 AGACTTTGAA
36901937 CCATTCCATTTACTTAATTT
1 CCATTCCATTTACTTAATTT
*
36901957 CCATTGCATTTACTTAATTT
1 CCATTCCATTTACTTAATTT
36901977 AGCTTAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.25, C:0.23, G:0.03, T:0.50
Consensus pattern (20 bp):
CCATTCCATTTACTTAATTT
Found at i:36909409 original size:9 final size:10
Alignment explanation
Indices: 36909396--36909485 Score: 52
Period size: 10 Copynumber: 9.4 Consensus size: 10
36909386 TTCTTTTTAC
36909396 AAAAT-TTAT
1 AAAATATTAT
*
36909405 TAAATATTAT
1 AAAATATTAT
*
36909415 AAAATATCAT
1 AAAATATTAT
36909425 AGAAA-ATTAT
1 A-AAATATTAT
*
36909435 AAAA-GTTAT
1 AAAATATTAT
36909444 GAAAA-A-TATT
1 -AAAATATTA-T
36909454 AAAATATTATT
1 AAAATATTA-T
*
36909465 GAAA-ATTAT
1 AAAATATTAT
36909474 AAAA-ATT-T
1 AAAATATTAT
36909482 AAAA
1 AAAA
36909486 AGTACCACTC
Statistics
Matches: 67, Mismatches: 8, Indels: 13
0.76 0.09 0.15
Matches are distributed among these distances:
8 5 0.07
9 24 0.36
10 28 0.42
11 10 0.15
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.36
Consensus pattern (10 bp):
AAAATATTAT
Found at i:36909435 original size:20 final size:18
Alignment explanation
Indices: 36909396--36909477 Score: 67
Period size: 20 Copynumber: 4.2 Consensus size: 18
36909386 TTCTTTTTAC
* *
36909396 AAAATTTATTAAATATTAT
1 AAAATATATGAAA-ATTAT
36909415 AAAATATCATAGAAAATTAT
1 AAAATAT-AT-GAAAATTAT
*
36909435 AAAAGT-TATGAAAAATATT
1 AAAA-TATATGAAAATTA-T
36909454 AAAATATTATTGAAAATTAT
1 AAAATA-TA-TGAAAATTAT
36909474 AAAA
1 AAAA
36909478 ATTTAAAAAG
Statistics
Matches: 52, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
18 8 0.15
19 13 0.25
20 19 0.37
21 12 0.23
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.35
Consensus pattern (18 bp):
AAAATATATGAAAATTAT
Found at i:36909467 original size:21 final size:21
Alignment explanation
Indices: 36909396--36909479 Score: 72
Period size: 21 Copynumber: 4.2 Consensus size: 21
36909386 TTCTTTTTAC
36909396 AAAAT-TTATT-AAATATTA-T
1 AAAATATTATTGAAA-ATTATT
* *
36909415 AAAATATCATAGAAAATTA-T
1 AAAATATTATTGAAAATTATT
* *
36909435 AAAA-GTTA-TGAAAAATATT
1 AAAATATTATTGAAAATTATT
*
36909454 AAAATATTATTGAAAATTATA
1 AAAATATTATTGAAAATTATT
36909475 AAAAT
1 AAAAT
36909480 TTAAAAAGTA
Statistics
Matches: 51, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
18 7 0.14
19 12 0.24
20 15 0.29
21 17 0.33
ACGTcount: A:0.58, C:0.01, G:0.05, T:0.36
Consensus pattern (21 bp):
AAAATATTATTGAAAATTATT
Found at i:36909484 original size:8 final size:9
Alignment explanation
Indices: 36909405--36909486 Score: 60
Period size: 9 Copynumber: 8.7 Consensus size: 9
36909395 CAAAATTTAT
*
36909405 TAAATATTA
1 TAAAAATTA
*
36909414 TAAAATATCA
1 TAAAA-ATTA
36909424 TAGAAAATTA
1 TA-AAAATTA
*
36909434 TAAAAGTTA
1 TAAAAATTA
36909443 TGAAAAA-TA
1 T-AAAAATTA
36909452 TTAAAATATTA
1 -TAAAA-ATTA
*
36909463 TTGAAAATTA
1 -TAAAAATTA
36909473 TAAAAATT-
1 TAAAAATTA
36909481 TAAAAA
1 TAAAAA
36909487 GTACCACTCT
Statistics
Matches: 60, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
8 6 0.10
9 24 0.40
10 20 0.33
11 10 0.17
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.34
Consensus pattern (9 bp):
TAAAAATTA
Found at i:36909748 original size:11 final size:11
Alignment explanation
Indices: 36909734--36909789 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
36909724 TTAATGACTT
36909734 TTTTTTTATAA
1 TTTTTTTATAA
36909745 --TTTTTATAA
1 TTTTTTTATAA
* *
36909754 --TTTTAATTA
1 TTTTTTTATAA
36909763 TTTTTTTATAA
1 TTTTTTTATAA
36909774 TTTTTTTATAA
1 TTTTTTTATAA
36909785 TTTTT
1 TTTTT
36909790 ATGATTTTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
9 16 0.41
11 23 0.59
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (11 bp):
TTTTTTTATAA
Found at i:36909757 original size:8 final size:9
Alignment explanation
Indices: 36909736--36909805 Score: 68
Period size: 9 Copynumber: 7.2 Consensus size: 9
36909726 AATGACTTTT
36909736 TTTTTATAA
1 TTTTTATAA
36909745 TTTTTATAA
1 TTTTTATAA
* *
36909754 TTTTAATTATT
1 TTTTTA-TA-A
36909765 TTTTTATAA
1 TTTTTATAA
36909774 TTTTTTTATAA
1 --TTTTTATAA
*
36909785 TTTTTATGA
1 TTTTTATAA
36909794 TTTTTAATAA
1 TTTTT-ATAA
36909804 TT
1 TT
36909806 CTTAATATTT
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
9 27 0.54
10 9 0.18
11 14 0.28
ACGTcount: A:0.30, C:0.00, G:0.01, T:0.69
Consensus pattern (9 bp):
TTTTTATAA
Found at i:36909780 original size:31 final size:29
Alignment explanation
Indices: 36909734--36909798 Score: 94
Period size: 31 Copynumber: 2.2 Consensus size: 29
36909724 TTAATGACTT
*
36909734 TTTTTTTATAATTTTTATAATTTTAATTA
1 TTTTTTTATAATTTTTATAATTTTAATGA
*
36909763 TTTTTTTATAATTTTTTTATAATTTTTATGA
1 TTTTTTTATAA--TTTTTATAATTTTAATGA
36909794 TTTTT
1 TTTTT
36909799 AATAATTCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 11 0.34
31 21 0.66
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (29 bp):
TTTTTTTATAATTTTTATAATTTTAATGA
Found at i:36909815 original size:19 final size:18
Alignment explanation
Indices: 36909771--36909817 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
36909761 TATTTTTTTA
*
36909771 TAAT-TTTTTTATAATTT
1 TAATATTTTTAATAATTT
*
36909788 TTATGATTTTTAATAATTCT
1 TAAT-ATTTTTAATAATT-T
36909808 TAATATTTTT
1 TAATATTTTT
36909818 TGCTACACGA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 3 0.12
19 17 0.71
20 4 0.17
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (18 bp):
TAATATTTTTAATAATTT
Found at i:36909818 original size:40 final size:40
Alignment explanation
Indices: 36909733--36909818 Score: 111
Period size: 40 Copynumber: 2.1 Consensus size: 40
36909723 TTTAATGACT
* * *
36909733 TTTTTTTTATAATTTTTATAATTTTAATTATTTTTTTATA
1 TTTTTTTTATAATTTTTATAATTTTAATTAATTCTTAATA
* *
36909773 ATTTTTTTATAATTTTTATGATTTTTAA-TAATTCTTAATA
1 TTTTTTTTATAATTTTTAT-AATTTTAATTAATTCTTAATA
36909813 TTTTTT
1 TTTTTT
36909819 GCTACACGAC
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
40 32 0.82
41 7 0.18
ACGTcount: A:0.28, C:0.01, G:0.01, T:0.70
Consensus pattern (40 bp):
TTTTTTTTATAATTTTTATAATTTTAATTAATTCTTAATA
Found at i:36910681 original size:6 final size:6
Alignment explanation
Indices: 36910670--36910722 Score: 61
Period size: 6 Copynumber: 8.8 Consensus size: 6
36910660 ATTCTAAACG
* * * *
36910670 TTAAAA TTAAAA TTAAAA TTAATA TTAATA TTAAAA TTAGAA TAAAAA
1 TTAAAA TTAAAA TTAAAA TTAAAA TTAAAA TTAAAA TTAAAA TTAAAA
*
36910718 ATAAA
1 TTAAA
36910723 GAAAAATTTC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (6 bp):
TTAAAA
Found at i:36917283 original size:18 final size:18
Alignment explanation
Indices: 36917260--36917294 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
36917250 TAGTCTTTTA
*
36917260 GATGCACTTGTTGAGTGT
1 GATGCACTGGTTGAGTGT
36917278 GATGCACTGGTTGAGTG
1 GATGCACTGGTTGAGTG
36917295 CTAATCACAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.11, G:0.37, T:0.34
Consensus pattern (18 bp):
GATGCACTGGTTGAGTGT
Found at i:36924336 original size:17 final size:19
Alignment explanation
Indices: 36924314--36924349 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
36924304 AAGAAGAAGA
36924314 TTTTTT-TATCTTATAATT
1 TTTTTTCTATCTTATAATT
36924332 TTTTTTCTATCTTATAAT
1 TTTTTTCTATCTTATAAT
36924350 CCAGTACTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.22, C:0.08, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTTTTCTATCTTATAATT
Found at i:36925207 original size:55 final size:55
Alignment explanation
Indices: 36925103--36925225 Score: 135
Period size: 55 Copynumber: 2.2 Consensus size: 55
36925093 TATCCGCCTA
* **
36925103 ATGGCCACGACTCGCCTCACCCTGCGTCCACGACTCTCCATCCTTTGTCCATTTG
1 ATGGCCACGACTCGCCTCACCCTGCGTCCACGACTCTCCATCCTATGTCCACCTG
* * *
36925158 ATGGCCACGACTTGCCTC-TCCTGCGTCCAC-AGT-TGGCCATCCCTATGTCCACCTG
1 ATGGCCACGACTCGCCTCACCCTGCGTCCACGACTCT--CCAT-CCTATGTCCACCTG
*
36925213 ATGGCCACAACTC
1 ATGGCCACGACTC
36925226 ACCATCTCTT
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
52 1 0.02
53 2 0.04
54 15 0.26
55 39 0.68
ACGTcount: A:0.16, C:0.41, G:0.18, T:0.25
Consensus pattern (55 bp):
ATGGCCACGACTCGCCTCACCCTGCGTCCACGACTCTCCATCCTATGTCCACCTG
Found at i:36929330 original size:20 final size:20
Alignment explanation
Indices: 36929305--36929342 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
36929295 ATGAATATTA
36929305 TGTGGTGTCAATAGTGGTTT
1 TGTGGTGTCAATAGTGGTTT
* *
36929325 TGTGGTGTGATTAGTGGT
1 TGTGGTGTCAATAGTGGT
36929343 CGGTAAGTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.03, G:0.39, T:0.45
Consensus pattern (20 bp):
TGTGGTGTCAATAGTGGTTT
Found at i:36929673 original size:31 final size:31
Alignment explanation
Indices: 36929638--36929709 Score: 108
Period size: 31 Copynumber: 2.3 Consensus size: 31
36929628 ATGCCTTTTA
* * *
36929638 TATTTTAAATCTATAATTTCCCTAGCTCACT
1 TATTTGAAATCAATAATTTCCCTACCTCACT
*
36929669 TATTTGAAAACAATAATTTCCCTACCTCACT
1 TATTTGAAATCAATAATTTCCCTACCTCACT
36929700 TATTTGAAAT
1 TATTTGAAAT
36929710 ATGAAAGGAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.33, C:0.21, G:0.04, T:0.42
Consensus pattern (31 bp):
TATTTGAAATCAATAATTTCCCTACCTCACT
Found at i:36941843 original size:17 final size:17
Alignment explanation
Indices: 36941812--36941855 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
36941802 ATTTGTTTGG
*
36941812 TTTATTTTTCTTTATTTA
1 TTTATTTTT-GTTATTTA
*
36941830 TTTCTTTTTGTTATTTA
1 TTTATTTTTGTTATTTA
36941847 TTTATTTTT
1 TTTATTTTT
36941856 ATCTCTTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 15 0.65
18 8 0.35
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.80
Consensus pattern (17 bp):
TTTATTTTTGTTATTTA
Found at i:36945508 original size:22 final size:22
Alignment explanation
Indices: 36945478--36945520 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
36945468 ACACCAAAAC
*
36945478 AGGCTTTTAGCGGTGCTTTTTT
1 AGGCCTTTAGCGGTGCTTTTTT
36945500 AGGCCTTTAGCGGTGCTTTTT
1 AGGCCTTTAGCGGTGCTTTTT
36945521 AGCGCCGCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.09, C:0.16, G:0.28, T:0.47
Consensus pattern (22 bp):
AGGCCTTTAGCGGTGCTTTTTT
Found at i:36945664 original size:43 final size:43
Alignment explanation
Indices: 36945548--36945799 Score: 187
Period size: 43 Copynumber: 5.9 Consensus size: 43
36945538 TACCAGCGCG
* * * *
36945548 CAAA-AAATGCCGCTAAAGACCAAGACCTGTAGCGGCGCTTTCAC
1 CAAACAAACGCCGCTAAAGACCATGATCTTTAGCGGCGC-TT-AC
** *
36945592 C--ACAAACGCCGCTAAAGGTCATGGTCTTTAGCGGCGCTTAC
1 CAAACAAACGCCGCTAAAGACCATGATCTTTAGCGGCGCTTAC
* * *
36945633 CAAACAAACGCCGCTAAAGACAATGACCTTTAGCGACGC-TAC
1 CAAACAAACGCCGCTAAAGACCATGATCTTTAGCGGCGCTTAC
* * * * *
36945675 TCCAACAATCGCCACTAAATACCCTGATCTTTAGCGGCGCTT-C
1 -CAAACAAACGCCGCTAAAGACCATGATCTTTAGCGGCGCTTAC
* * * *
36945718 TCTAGAA-AAA-GCCGCTACAGACCCTGATCTTTAGCGTCGCCTTTC
1 -C-A-AACAAACGCCGCTAAAGACCATGATCTTTAGCGGCG-CTTAC
* * *
36945763 C-AACAAACGCCACTAAAGTCCCTGATCTTTAGCGGCG
1 CAAACAAACGCCGCTAAAGACCATGATCTTTAGCGGCG
36945800 TTTTTCTCTT
Statistics
Matches: 166, Mismatches: 31, Indels: 23
0.75 0.14 0.10
Matches are distributed among these distances:
41 5 0.03
42 9 0.05
43 141 0.85
44 8 0.05
45 3 0.02
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (43 bp):
CAAACAAACGCCGCTAAAGACCATGATCTTTAGCGGCGCTTAC
Found at i:36945706 original size:86 final size:86
Alignment explanation
Indices: 36945550--36945799 Score: 237
Period size: 86 Copynumber: 2.9 Consensus size: 86
36945540 CCAGCGCGCA
* * * * *
36945550 AAAAATGCCGCTAAAGACCAA-GACCTGTAGCGGCG-CTTTCACCACAAACGCCGCTAAAGGT-C
1 AAAAA-GCCGCTAAAGA-CAATGACCTTTAGCGACGCCTCTC-CAACAAACGCCACTAAA-GTCC
* *
36945612 ATGGTCTTTAGCGGCGCTTAC-C-A-
62 CTGATCTTTAGCGGCGCTT-CTCTAG
*
36945635 AACAAACGCCGCTAAAGACAATGACCTTTAGCGACG-CTACTCCAACAATCGCCACTAAA-TACC
1 AA-AAA-GCCGCTAAAGACAATGACCTTTAGCGACGCCT-CTCCAACAAACGCCACTAAAGT-CC
36945698 CTGATCTTTAGCGGCGCTTCTCTAG
62 CTGATCTTTAGCGGCGCTTCTCTAG
* ** * * *
36945723 AAAAAGCCGCTACAGACCCTGATCTTTAGCGTCGCCTTTCCAACAAACGCCACTAAAGTCCCTGA
1 AAAAAGCCGCTAAAGACAATGACCTTTAGCGACGCCTCTCCAACAAACGCCACTAAAGTCCCTGA
36945788 TCTTTAGCGGCG
66 TCTTTAGCGGCG
36945800 TTTTTCTCTT
Statistics
Matches: 139, Mismatches: 16, Indels: 19
0.80 0.09 0.11
Matches are distributed among these distances:
84 1 0.01
85 6 0.04
86 121 0.87
87 9 0.06
88 2 0.01
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (86 bp):
AAAAAGCCGCTAAAGACAATGACCTTTAGCGACGCCTCTCCAACAAACGCCACTAAAGTCCCTGA
TCTTTAGCGGCGCTTCTCTAG
Found at i:36945814 original size:43 final size:43
Alignment explanation
Indices: 36945684--36945861 Score: 128
Period size: 43 Copynumber: 4.1 Consensus size: 43
36945674 CTCCAACAAT
*
36945684 CGCCACTAAA-TACCCTGATCTTTAGCGGCGCTTCTCT-AGAAAA
1 CGCCACTAAAGT-CCCTGATCTTTAGCGGCGCTTTTCTCA-AAAA
* * * * * *
36945727 AGCCGCTACAGACCCTGATCTTTAGCGTCGCCTTTC-CAACAAA
1 CGCCACTAAAGTCCCTGATCTTTAGCGGCGCTTTTCTCAA-AAA
* **
36945770 CGCCACTAAAGTCCCTGATCTTTAGCGGCGTTTTTCTCTTAAA
1 CGCCACTAAAGTCCCTGATCTTTAGCGGCGCTTTTCTCAAAAA
** * * * * * * **
36945813 CGCTGCTGAAGACCATGATCTTCAGCAGCGGTTTTCTCACCAA
1 CGCCACTAAAGTCCCTGATCTTTAGCGGCGCTTTTCTCAAAAA
36945856 CGCCAC
1 CGCCAC
36945862 AAAATTTGGC
Statistics
Matches: 102, Mismatches: 29, Indels: 8
0.73 0.21 0.06
Matches are distributed among these distances:
42 1 0.01
43 100 0.98
44 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.17, T:0.26
Consensus pattern (43 bp):
CGCCACTAAAGTCCCTGATCTTTAGCGGCGCTTTTCTCAAAAA
Found at i:36945832 original size:86 final size:85
Alignment explanation
Indices: 36945616--36945834 Score: 221
Period size: 86 Copynumber: 2.5 Consensus size: 85
36945606 AAGGTCATGG
* * *
36945616 TCTTTAGCGGCGCTTAC-C-AAACAAACGCCGCTAAAGACAATGACCTTTAGCGACGCTACTCCA
1 TCTTTAGCGGCGCTT-CTCTAGA-AAACGCCGCT-AAGACCATGATCTTTAGCGACGCTACTCCA
*
36945679 ACAATCGCCACTAAATACCCTGA
63 ACAAACGCCACTAAATACCCTGA
* * * *
36945702 TCTTTAGCGGCGCTTCTCTAGAAAAAGCCGCTACAGACCCTGATCTTTAGCGTCGCCT-TTCCAA
1 TCTTTAGCGGCGCTTCTCTAGAAAACGCCGCTA-AGACCATGATCTTTAGCGACG-CTACTCCAA
36945766 CAAACGCCACTAAAGT-CCCTGA
64 CAAACGCCACTAAA-TACCCTGA
* * *** *
36945788 TCTTTAGCGGCGTTTTTCTCTTAAACGCTGCTGAAGACCATGATCTT
1 TCTTTAGCGGCGCTTCTCTAGAAAACGCCGCT-AAGACCATGATCTT
36945835 CAGCAGCGGT
Statistics
Matches: 111, Mismatches: 16, Indels: 12
0.80 0.12 0.09
Matches are distributed among these distances:
85 2 0.02
86 103 0.93
87 6 0.05
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.26
Consensus pattern (85 bp):
TCTTTAGCGGCGCTTCTCTAGAAAACGCCGCTAAGACCATGATCTTTAGCGACGCTACTCCAACA
AACGCCACTAAATACCCTGA
Found at i:36946214 original size:21 final size:21
Alignment explanation
Indices: 36946185--36946255 Score: 97
Period size: 21 Copynumber: 3.4 Consensus size: 21
36946175 TTTTACGCTG
36946185 CTCTGCTTCCCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* *
36946206 CTCTACTTCCCTCACTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* *
36946227 CTCTGCTTCTCTCGCTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
*
36946248 ATCTGCTT
1 CTCTGCTT
36946256 TAAGCTGCTG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.07, C:0.45, G:0.15, T:0.32
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:36946302 original size:65 final size:66
Alignment explanation
Indices: 36946226--36946370 Score: 215
Period size: 65 Copynumber: 2.2 Consensus size: 66
36946216 CTCACTGCAG
*
36946226 CCTCTGCTTCTCTCGCTGCCGCATCTGCTTTAAGCTGCT-GCT-GAGTTCTTCATA-CTTTCGTT
1 CCTCAGCTTCTCTCGCTGCCGCATCTGCTTTAAGCTG-TAGCTGGAGTTCTTCATATCTTT-GTT
36946288 GAA
64 GAA
* * *
36946291 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGTTGTAGCTGGAGTTCTTCATATCTTTTTTGA
1 CCTCAGCTTCTCTCGCTGCCGCATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTGTTGA
36946356 A
66 A
36946357 CCTCAGCTTCTCTC
1 CCTCAGCTTCTCTC
36946371 AATGTTGCCT
Statistics
Matches: 73, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
64 1 0.01
65 37 0.51
66 31 0.42
67 4 0.05
ACGTcount: A:0.13, C:0.30, G:0.17, T:0.40
Consensus pattern (66 bp):
CCTCAGCTTCTCTCGCTGCCGCATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTGTTGA
A
Found at i:36946367 original size:66 final size:65
Alignment explanation
Indices: 36946226--36946395 Score: 218
Period size: 66 Copynumber: 2.6 Consensus size: 65
36946216 CTCACTGCAG
* * *
36946226 CCTCTGCTTCTCTCGCTGCCGCATCTGCTTTAAGCTGCT-GCTGAGTTCTTCATACTTTCGTTGA
1 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGTTG-TAGCTGAGTTCTTCATACTTTCGTTGA
36946290 A
65 A
*
36946291 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGTTGTAGCTGGAGTTCTTCATATCTTT-TTTG
1 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGTTGTAGCT-GAGTTCTTCATA-CTTTCGTTG
36946355 AA
64 AA
** * * *
36946357 CCTCAGCTTCTCTCAATGTTGCCTCCGCTTTAAGTTGTA
1 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGTTGTA
36946396 TAATTTGCTC
Statistics
Matches: 93, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
64 1 0.01
65 37 0.40
66 51 0.55
67 4 0.04
ACGTcount: A:0.14, C:0.28, G:0.18, T:0.40
Consensus pattern (65 bp):
CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGTTGTAGCTGAGTTCTTCATACTTTCGTTGAA
Found at i:36948245 original size:145 final size:145
Alignment explanation
Indices: 36947982--36948272 Score: 582
Period size: 145 Copynumber: 2.0 Consensus size: 145
36947972 ATTACAACAA
36947982 TAATAGAACATATAAAATAGTTGAAATATATAAAAAGACCAATATTTATATTATGATATTACATA
1 TAATAGAACATATAAAATAGTTGAAATATATAAAAAGACCAATATTTATATTATGATATTACATA
36948047 TAATTAAATAATCGTAAAAGCTTACTACATTATAATTCGTAAATATCTTCATCCATATCCTGGCG
66 TAATTAAATAATCGTAAAAGCTTACTACATTATAATTCGTAAATATCTTCATCCATATCCTGGCG
36948112 GACCCATTGAAATTG
131 GACCCATTGAAATTG
36948127 TAATAGAACATATAAAATAGTTGAAATATATAAAAAGACCAATATTTATATTATGATATTACATA
1 TAATAGAACATATAAAATAGTTGAAATATATAAAAAGACCAATATTTATATTATGATATTACATA
36948192 TAATTAAATAATCGTAAAAGCTTACTACATTATAATTCGTAAATATCTTCATCCATATCCTGGCG
66 TAATTAAATAATCGTAAAAGCTTACTACATTATAATTCGTAAATATCTTCATCCATATCCTGGCG
36948257 GACCCATTGAAATTG
131 GACCCATTGAAATTG
36948272 T
1 T
36948273 GTACTAGTAC
Statistics
Matches: 146, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
145 146 1.00
ACGTcount: A:0.43, C:0.13, G:0.10, T:0.34
Consensus pattern (145 bp):
TAATAGAACATATAAAATAGTTGAAATATATAAAAAGACCAATATTTATATTATGATATTACATA
TAATTAAATAATCGTAAAAGCTTACTACATTATAATTCGTAAATATCTTCATCCATATCCTGGCG
GACCCATTGAAATTG
Found at i:36949420 original size:9 final size:9
Alignment explanation
Indices: 36949403--36950070 Score: 190
Period size: 9 Copynumber: 78.2 Consensus size: 9
36949393 TAAGTATAAT
*
36949403 TAAGCTATG
1 TAAGTTATG
36949412 TAAGTTATG
1 TAAGTTATG
*
36949421 TAAGTTATA
1 TAAGTTATG
*
36949430 TAAGTTGTG
1 TAAGTTATG
*
36949439 T-A-TAATG
1 TAAGTTATG
36949446 TAAGTTATG
1 TAAGTTATG
*
36949455 AAAGTTATG
1 TAAGTTATG
36949464 T-A-TTATG
1 TAAGTTATG
*
36949471 TAAGCTATG
1 TAAGTTATG
36949480 T-A-TTATG
1 TAAGTTATG
*
36949487 TAAGTTATT
1 TAAGTTATG
*
36949496 TAAGTTGTG
1 TAAGTTATG
36949505 T-A-TTATG
1 TAAGTTATG
*
36949512 TAAGTCATG
1 TAAGTTATG
* *
36949521 TAGGCTATG
1 TAAGTTATG
36949530 T-A-TTATG
1 TAAGTTATG
36949537 TAAGTTA--
1 TAAGTTATG
*
36949544 TAA--TAAG
1 TAAGTTATG
36949551 TAAGTTATG
1 TAAGTTATG
* *
36949560 AAAGTTATATA
1 TAAG-T-TATG
*
36949571 TAAGTTTATATA
1 TAAG--T-TATG
36949583 TAAGTTATG
1 TAAGTTATG
36949592 TAAGTTA--
1 TAAGTTATG
36949599 T-A--TATG
1 TAAGTTATG
36949605 TAAGTTATG
1 TAAGTTATG
*
36949614 T--GTTGTG
1 TAAGTTATG
*
36949621 TAAGTTTATATA
1 TAAG--T-TATG
*
36949633 TAAATTTTAT-
1 T-AA-GTTATG
36949643 TCAAGTTATG
1 T-AAGTTATG
36949653 --A---ATG
1 TAAGTTATG
36949657 TAAGTTATG
1 TAAGTTATG
36949666 TAAGTTATG
1 TAAGTTATG
*
36949675 T--GTAATG
1 TAAGTTATG
*
36949682 TAAGTTCTG
1 TAAGTTATG
36949691 T-A-TTATG
1 TAAGTTATG
*
36949698 TAAGTTATT
1 TAAGTTATG
*
36949707 TAAGTTGTG
1 TAAGTTATG
36949716 T-A-TTATG
1 TAAGTTATG
*
36949723 TAAGTCATG
1 TAAGTTATG
* *
36949732 TAGGCTATG
1 TAAGTTATG
36949741 T--GTTATG
1 TAAGTTATG
36949748 TAAGTTAT-
1 TAAGTTATG
*
36949756 T-A--TAAG
1 TAAGTTATG
36949762 TAAGTTATG
1 TAAGTTATG
* *
36949771 AAAGTTATATA
1 TAAG-T-TATG
*
36949782 TAAGTTTATATA
1 TAAG--T-TATG
36949794 TAAGTTATG
1 TAAGTTATG
36949803 TAAGTTA--
1 TAAGTTATG
36949810 T-A--TATG
1 TAAGTTATG
36949816 TAAGTTATG
1 TAAGTTATG
*
36949825 T--GTTGTG
1 TAAGTTATG
*
36949832 TAAGTTTATATA
1 TAAG--T-TATG
*
36949844 TAAATTTTAT-
1 T-AA-GTTATG
36949854 TCAAGTTATG
1 T-AAGTTATG
36949864 --A---ATG
1 TAAGTTATG
36949868 TAAGTTATG
1 TAAGTTATG
*
36949877 TAAGTTGTG
1 TAAGTTATG
*
36949886 T--GTAATG
1 TAAGTTATG
36949893 TAAGTTATG
1 TAAGTTATG
*
36949902 TAAGTTGTG
1 TAAGTTATG
*
36949911 T--GTAATG
1 TAAGTTATG
36949918 TAAGTTATG
1 TAAGTTATG
36949927 T-A-TTATG
1 TAAGTTATG
*
36949934 TAAGTTATT
1 TAAGTTATG
*
36949943 TAAGTTATT
1 TAAGTTATG
*
36949952 TAAGTTGTG
1 TAAGTTATG
36949961 T-A-TTATG
1 TAAGTTATG
*
36949968 TAAGTCATG
1 TAAGTTATG
* *
36949977 TAGGCTATG
1 TAAGTTATG
36949986 T--GTTATG
1 TAAGTTATG
36949993 TAAGTTAT-
1 TAAGTTATG
*
36950001 T-A--TAAG
1 TAAGTTATG
36950007 TAAGTTATG
1 TAAGTTATG
* *
36950016 AAAGTTATATA
1 TAAG-T-TATG
*
36950027 TAAGTTTATATA
1 TAAG--T-TATG
36950039 TAAGTTATG
1 TAAGTTATG
36950048 TAAGTTATTGTG
1 TAAGTTA---TG
36950060 TAAGTTATG
1 TAAGTTATG
36950069 TA
1 TA
36950071 TTGTGTAAGT
Statistics
Matches: 491, Mismatches: 80, Indels: 176
0.66 0.11 0.24
Matches are distributed among these distances:
4 10 0.02
5 6 0.01
6 8 0.02
7 102 0.21
8 19 0.04
9 254 0.52
10 12 0.02
11 26 0.05
12 50 0.10
13 4 0.01
ACGTcount: A:0.34, C:0.02, G:0.19, T:0.45
Consensus pattern (9 bp):
TAAGTTATG
Found at i:36949450 original size:25 final size:25
Alignment explanation
Indices: 36949418--36949479 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
36949408 TATGTAAGTT
*
36949418 ATGTAAGTTAT-ATAAGTTGTGTATA
1 ATGTAAGTTATGA-AAGTTATGTATA
*
36949443 ATGTAAGTTATGAAAGTTATGTATT
1 ATGTAAGTTATGAAAGTTATGTATA
*
36949468 ATGTAAGCTATG
1 ATGTAAGTTATG
36949480 TATTATGTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
25 32 0.97
26 1 0.03
ACGTcount: A:0.35, C:0.02, G:0.21, T:0.42
Consensus pattern (25 bp):
ATGTAAGTTATGAAAGTTATGTATA
Found at i:36949469 original size:16 final size:16
Alignment explanation
Indices: 36949450--36949544 Score: 77
Period size: 16 Copynumber: 5.8 Consensus size: 16
36949440 ATAATGTAAG
*
36949450 TTATGAAAGTTATGTA
1 TTATGTAAGTTATGTA
*
36949466 TTATGTAAGCTATGTA
1 TTATGTAAGTTATGTA
*
36949482 TTATGTAAGTTATTTAA
1 TTATGTAAGTTATGT-A
*
36949499 GTTGTGT-A-TTATGTAA
1 -TTATGTAAGTTATGT-A
* * *
36949515 GTCATGTAGGCTATGTA
1 -TTATGTAAGTTATGTA
36949532 TTATGTAAGTTAT
1 TTATGTAAGTTAT
36949545 AATAAGTAAG
Statistics
Matches: 62, Mismatches: 13, Indels: 8
0.75 0.16 0.10
Matches are distributed among these distances:
16 49 0.79
17 3 0.05
18 10 0.16
ACGTcount: A:0.31, C:0.03, G:0.20, T:0.46
Consensus pattern (16 bp):
TTATGTAAGTTATGTA
Found at i:36949513 original size:66 final size:68
Alignment explanation
Indices: 36949403--36949540 Score: 208
Period size: 66 Copynumber: 2.1 Consensus size: 68
36949393 TAAGTATAAT
* *
36949403 TAAGCTATGTAAGTTATGTAAGTTATATAAGTTGTGTATAATGTAAGTTATGAAAGTTATGTATT
1 TAAGCTATGTAAGTTATGTAAGTTATATAAGTTGTGTATAATGTAAGTCATGAAAGCTATGTATT
36949468 ATG
66 ATG
* * * *
36949471 TAAGCTATGT-A-TTATGTAAGTTATTTAAGTTGTGTATTATGTAAGTCATGTAGGCTATGTATT
1 TAAGCTATGTAAGTTATGTAAGTTATATAAGTTGTGTATAATGTAAGTCATGAAAGCTATGTATT
36949534 ATG
66 ATG
36949537 TAAG
1 TAAG
36949541 TTATAATAAG
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
66 53 0.83
67 1 0.02
68 10 0.16
ACGTcount: A:0.33, C:0.03, G:0.21, T:0.43
Consensus pattern (68 bp):
TAAGCTATGTAAGTTATGTAAGTTATATAAGTTGTGTATAATGTAAGTCATGAAAGCTATGTATT
ATG
Found at i:36949531 original size:25 final size:25
Alignment explanation
Indices: 36949468--36949541 Score: 103
Period size: 25 Copynumber: 3.0 Consensus size: 25
36949458 GTTATGTATT
*
36949468 ATGTAAGCTATGTATTATGTAAGTT
1 ATGTAAGCTATGTATTATGTAAGTC
* * *
36949493 ATTTAAGTTGTGTATTATGTAAGTC
1 ATGTAAGCTATGTATTATGTAAGTC
*
36949518 ATGTAGGCTATGTATTATGTAAGT
1 ATGTAAGCTATGTATTATGTAAGT
36949542 TATAATAAGT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.30, C:0.04, G:0.22, T:0.45
Consensus pattern (25 bp):
ATGTAAGCTATGTATTATGTAAGTC
Found at i:36949575 original size:34 final size:34
Alignment explanation
Indices: 36949536--36949612 Score: 97
Period size: 32 Copynumber: 2.3 Consensus size: 34
36949526 TATGTATTAT
36949536 GTAAGTTATA-ATAAGTAAGTTATGAAAGTTATATA
1 GTAAGTTATATAT-A-TAAGTTATGAAAGTTATATA
*
36949571 -TAAGTT-TATATATAAGTTATGTAAGTTATATA
1 GTAAGTTATATATATAAGTTATGAAAGTTATATA
36949603 TGTAAGTTAT
1 -GTAAGTTAT
36949613 GTGTTGTGTA
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
32 19 0.51
33 3 0.08
34 14 0.38
35 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.43
Consensus pattern (34 bp):
GTAAGTTATATATATAAGTTATGAAAGTTATATA
Found at i:36949582 original size:10 final size:11
Alignment explanation
Indices: 36949561--36949603 Score: 54
Period size: 12 Copynumber: 4.0 Consensus size: 11
36949551 TAAGTTATGA
36949561 AAGTTATATAT
1 AAGTTATATAT
36949572 AAGTTTATATAT
1 AAG-TTATATAT
*
36949584 AAG-T-TATGT
1 AAGTTATATAT
36949593 AAGTTATATAT
1 AAGTTATATAT
36949604 GTAAGTTATG
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
9 7 0.26
10 2 0.07
11 7 0.26
12 11 0.41
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.47
Consensus pattern (11 bp):
AAGTTATATAT
Found at i:36949606 original size:13 final size:13
Alignment explanation
Indices: 36949588--36949612 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36949578 ATATATAAGT
36949588 TATGTAAGTTATA
1 TATGTAAGTTATA
36949601 TATGTAAGTTAT
1 TATGTAAGTTAT
36949613 GTGTTGTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (13 bp):
TATGTAAGTTATA
Found at i:36949634 original size:50 final size:50
Alignment explanation
Indices: 36949571--36949957 Score: 185
Period size: 50 Copynumber: 7.5 Consensus size: 50
36949561 AAGTTATATA
36949571 TAAGTTTATATATAAGTTATGTAAGTTATATATGTAAGTTATGTGTTGTG
1 TAAGTTTATATATAAGTTATGTAAGTTATATATGTAAGTTATGTGTTGTG
* **
36949621 TAAGTTTATATATAAATTTTAT-TCAAGTTATGA-ATGTAAGTTATGT-AAGT-
1 TAAGTTTATATAT-AA-GTTATGT-AAGTTAT-ATATGTAAGTTATGTGTTGTG
* * * * * * * * *
36949671 TATGTGTA-ATGTAAGTTCTGTATTATGTAAGT-TATTTAAGTTGTGTATTATG
1 TAAGTTTATATATAAGTTATGTA--A-GTTA-TATATGTAAGTTATGTGTTGTG
** ** * * * *
36949723 TAAGTCATGTAGGCTATGTGTTATGTAAGTTATTATAAGTAAGTTATGAAAGTTATATA
1 TAAGT--T-TA-TATATAAGTTATGTAAGTTA-TATATGTAAGTTATG--TG-T-TGTG
36949782 TAAGTTTATATATAAGTTATGTAAGTTATATATGTAAGTTATGTGTTGTG
1 TAAGTTTATATATAAGTTATGTAAGTTATATATGTAAGTTATGTGTTGTG
*
36949832 TAAGTTTATATATAAATTTTAT-TCAAGTTATGA-ATGTAAGTTATGTAAGTTGTG
1 TAAGTTTATATAT-AA-GTTATGT-AAGTTAT-ATATGTAAGTTATGT--GTTGTG
* * * * *
36949886 T--G--TA-ATGTAAGTTATGTAAGTTGTGTGTAATGTAAGTTATGTATTATG
1 TAAGTTTATATATAAGTTATGTAAG-T-TATAT-ATGTAAGTTATGTGTTGTG
*
36949934 TAAG-TTAT-T-TAAGTTATTTAAGTT
1 TAAGTTTATATATAAGTTATGTAAGTT
36949958 GTGTATTATG
Statistics
Matches: 255, Mismatches: 45, Indels: 76
0.68 0.12 0.20
Matches are distributed among these distances:
47 11 0.04
48 13 0.05
49 10 0.04
50 76 0.30
51 14 0.05
52 54 0.21
53 2 0.01
54 25 0.10
55 29 0.11
56 2 0.01
57 10 0.04
58 1 0.00
59 8 0.03
ACGTcount: A:0.33, C:0.01, G:0.19, T:0.47
Consensus pattern (50 bp):
TAAGTTTATATATAAGTTATGTAAGTTATATATGTAAGTTATGTGTTGTG
Found at i:36949684 original size:16 final size:16
Alignment explanation
Indices: 36949663--36949705 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
36949653 AATGTAAGTT
*
36949663 ATGTAAGTTATGTGTA
1 ATGTAAGTTATGTATA
* *
36949679 ATGTAAGTTCTGTATT
1 ATGTAAGTTATGTATA
36949695 ATGTAAGTTAT
1 ATGTAAGTTAT
36949706 TTAAGTTGTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.30, C:0.02, G:0.21, T:0.47
Consensus pattern (16 bp):
ATGTAAGTTATGTATA
Found at i:36949710 original size:25 final size:25
Alignment explanation
Indices: 36949682--36950007 Score: 135
Period size: 25 Copynumber: 13.2 Consensus size: 25
36949672 ATGTGTAATG
*
36949682 TAAGTTCTGTATTATGTAAGTTATT
1 TAAGTTATGTATTATGTAAGTTATT
* * *
36949707 TAAGTTGTGTATTATGTAAGTCATG
1 TAAGTTATGTATTATGTAAGTTATT
* * *
36949732 TAGGCTATGTGTTATGTAAGTTATT
1 TAAGTTATGTATTATGTAAGTTATT
* *
36949757 ATAAG-TAAG--TTATGAAAGTTATAT
1 -TAAGTTATGTATTATGTAAGTTAT-T
* *
36949781 ATAAG-T-T-TA-TATATAAGTTATG
1 -TAAGTTATGTATTATGTAAGTTATT
36949803 TAAGTTA--TA-TATGTAAGTTATGT
1 TAAGTTATGTATTATGTAAGTTAT-T
* * * * *
36949826 GT-TGTGTAAGTTTATATATAAATTTTATT
1 -TAAGT-TATGTAT-TATGT-AA-GTTATT
* *
36949855 CAAGTTATG-A--ATGTAAGTTATG
1 TAAGTTATGTATTATGTAAGTTATT
* * * *
36949877 TAAGTTGTGTGTAATGTAAGTTATG
1 TAAGTTATGTATTATGTAAGTTATT
* * * *
36949902 TAAGTTGTGTGTAATGTAAGTTATG
1 TAAGTTATGTATTATGTAAGTTATT
*
36949927 T-A-TTATGTAAGTTATTTAAGTTATT
1 TAAGTTATGT-A-TTATGTAAGTTATT
* * *
36949952 TAAGTTGTGTATTATGTAAGTCATG
1 TAAGTTATGTATTATGTAAGTTATT
* * *
36949977 TAGGCTATGTGTTATGTAAGTTATT
1 TAAGTTATGTATTATGTAAGTTATT
36950002 ATAAGT
1 -TAAGT
36950008 AAGTTATGAA
Statistics
Matches: 228, Mismatches: 49, Indels: 47
0.70 0.15 0.15
Matches are distributed among these distances:
21 4 0.02
22 25 0.11
23 31 0.14
24 14 0.06
25 124 0.54
26 9 0.04
27 5 0.02
28 7 0.03
29 5 0.02
30 4 0.02
ACGTcount: A:0.32, C:0.02, G:0.20, T:0.46
Consensus pattern (25 bp):
TAAGTTATGTATTATGTAAGTTATT
Found at i:36949775 original size:23 final size:24
Alignment explanation
Indices: 36949742--36949786 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
36949732 TAGGCTATGT
*
36949742 GTTATGTAAGTTAT-TATAAGTAA
1 GTTATGAAAGTTATATATAAGTAA
36949765 GTTATGAAAGTTATATATAAGT
1 GTTATGAAAGTTATATATAAGT
36949787 TTATATATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.40, C:0.00, G:0.18, T:0.42
Consensus pattern (24 bp):
GTTATGAAAGTTATATATAAGTAA
Found at i:36949787 original size:34 final size:35
Alignment explanation
Indices: 36949747--36949823 Score: 99
Period size: 32 Copynumber: 2.3 Consensus size: 35
36949737 TATGTGTTAT
36949747 GTAAGTTATTATA-AGTAAGTTATGAAAGTTATATA
1 GTAAGTTATTATATA-TAAGTTATGAAAGTTATATA
*
36949782 -TAAG-T-TTATATATAAGTTATGTAAGTTATATA
1 GTAAGTTATTATATATAAGTTATGAAAGTTATATA
36949814 TGTAAGTTAT
1 -GTAAGTTAT
36949824 GTGTTGTGTA
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
32 24 0.67
33 2 0.06
34 8 0.22
35 1 0.03
36 1 0.03
ACGTcount: A:0.40, C:0.00, G:0.16, T:0.44
Consensus pattern (35 bp):
GTAAGTTATTATATATAAGTTATGAAAGTTATATA
Found at i:36949793 original size:10 final size:11
Alignment explanation
Indices: 36949772--36949814 Score: 54
Period size: 12 Copynumber: 4.0 Consensus size: 11
36949762 TAAGTTATGA
36949772 AAGTTATATAT
1 AAGTTATATAT
36949783 AAGTTTATATAT
1 AAG-TTATATAT
*
36949795 AAG-T-TATGT
1 AAGTTATATAT
36949804 AAGTTATATAT
1 AAGTTATATAT
36949815 GTAAGTTATG
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
9 7 0.26
10 2 0.07
11 7 0.26
12 11 0.41
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.47
Consensus pattern (11 bp):
AAGTTATATAT
Found at i:36949806 original size:211 final size:211
Alignment explanation
Indices: 36949442--36949938 Score: 854
Period size: 211 Copynumber: 2.4 Consensus size: 211
36949432 AGTTGTGTAT
* * * *
36949442 AATGTAAGTTATGAAAGTTATGTATTATGTAAGCTATGTATTATGTAAGTTATTTAAGTTGTGTA
1 AATGTAAGTTATGTAAGTTATGTGTAATGTAAGTTATGTATTATGTAAGTTATTTAAGTTGTGTA
36949507 TTATGTAAGTCATGTAGGCTATGTATTATGTAAGTTATAATAAGTAAGTTATGAAAGTTATATAT
66 TTATGTAAGTCATGTAGGCTATGTATTATGTAAGTTATAATAAGTAAGTTATGAAAGTTATATAT
36949572 AAGTTTATATATAAGTTATGTAAGTTATATATGTAAGTTATGTGTTGTGTAAGTTTATATATAAA
131 AAGTTTATATATAAGTTATGTAAGTTATATATGTAAGTTATGTGTTGTGTAAGTTTATATATAAA
36949637 TTTTATTCAAGTTATG
196 TTTTATTCAAGTTATG
*
36949653 AATGTAAGTTATGTAAGTTATGTGTAATGTAAGTTCTGTATTATGTAAGTTATTTAAGTTGTGTA
1 AATGTAAGTTATGTAAGTTATGTGTAATGTAAGTTATGTATTATGTAAGTTATTTAAGTTGTGTA
* *
36949718 TTATGTAAGTCATGTAGGCTATGTGTTATGTAAGTTATTATAAGTAAGTTATGAAAGTTATATAT
66 TTATGTAAGTCATGTAGGCTATGTATTATGTAAGTTATAATAAGTAAGTTATGAAAGTTATATAT
36949783 AAGTTTATATATAAGTTATGTAAGTTATATATGTAAGTTATGTGTTGTGTAAGTTTATATATAAA
131 AAGTTTATATATAAGTTATGTAAGTTATATATGTAAGTTATGTGTTGTGTAAGTTTATATATAAA
36949848 TTTTATTCAAGTTATG
196 TTTTATTCAAGTTATG
* * * * *
36949864 AATGTAAGTTATGTAAGTTGTGTGTAATGTAAGTTATGTAAGTTGTGT--GTAATGTAAGTTATG
1 AATGTAAGTTATGTAAGTTATGTGTAATGTAAGTTATGT-A-TTATGTAAGTTATTTAAGTTGTG
36949927 TATTATGTAAGT
64 TATTATGTAAGT
36949939 TATTTAAGTT
Statistics
Matches: 271, Mismatches: 13, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
211 265 0.98
212 1 0.00
213 5 0.02
ACGTcount: A:0.34, C:0.02, G:0.20, T:0.45
Consensus pattern (211 bp):
AATGTAAGTTATGTAAGTTATGTGTAATGTAAGTTATGTATTATGTAAGTTATTTAAGTTGTGTA
TTATGTAAGTCATGTAGGCTATGTATTATGTAAGTTATAATAAGTAAGTTATGAAAGTTATATAT
AAGTTTATATATAAGTTATGTAAGTTATATATGTAAGTTATGTGTTGTGTAAGTTTATATATAAA
TTTTATTCAAGTTATG
Found at i:36949817 original size:13 final size:13
Alignment explanation
Indices: 36949799--36949823 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36949789 ATATATAAGT
36949799 TATGTAAGTTATA
1 TATGTAAGTTATA
36949812 TATGTAAGTTAT
1 TATGTAAGTTAT
36949824 GTGTTGTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (13 bp):
TATGTAAGTTATA
Found at i:36949819 original size:22 final size:21
Alignment explanation
Indices: 36949782--36949825 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 21
36949772 AAGTTATATA
36949782 TAAGTTTATATATAAGTTATG
1 TAAGTTTATATATAAGTTATG
*
36949803 TAAGTTATATATGTAAGTTATG
1 TAAGTT-TATATATAAGTTATG
36949825 T
1 T
36949826 GTTGTGTAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (21 bp):
TAAGTTTATATATAAGTTATG
Found at i:36949895 original size:16 final size:16
Alignment explanation
Indices: 36949874--36949939 Score: 56
Period size: 16 Copynumber: 4.6 Consensus size: 16
36949864 AATGTAAGTT
36949874 ATGTAAGTTGTGTGTA
1 ATGTAAGTTGTGTGTA
36949890 ATGTAA-----GT-T-
1 ATGTAAGTTGTGTGTA
36949899 ATGTAAGTTGTGTGTA
1 ATGTAAGTTGTGTGTA
* * *
36949915 ATGTAAGTTATGTATT
1 ATGTAAGTTGTGTGTA
36949931 ATGTAAGTT
1 ATGTAAGTT
36949940 ATTTAAGTTA
Statistics
Matches: 40, Mismatches: 3, Indels: 14
0.70 0.05 0.25
Matches are distributed among these distances:
9 6 0.15
10 1 0.03
11 2 0.05
14 2 0.05
15 1 0.03
16 28 0.70
ACGTcount: A:0.29, C:0.00, G:0.26, T:0.45
Consensus pattern (16 bp):
ATGTAAGTTGTGTGTA
Found at i:36949940 original size:16 final size:16
Alignment explanation
Indices: 36949897--36949978 Score: 83
Period size: 16 Copynumber: 5.0 Consensus size: 16
36949887 GTAATGTAAG
* *
36949897 TTATGTAAGTTGTGTG
1 TTATGTAAGTTATGTA
*
36949913 TAATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
*
36949929 TTATGTAAGTTATTTAA
1 TTATGTAAGTTATGT-A
* *
36949946 GTTATTTAAGTTGTGTA
1 -TTATGTAAGTTATGTA
*
36949963 TTATGTAAGTCATGTA
1 TTATGTAAGTTATGTA
36949979 GGCTATGTGT
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
16 39 0.74
17 2 0.04
18 12 0.23
ACGTcount: A:0.29, C:0.01, G:0.21, T:0.49
Consensus pattern (16 bp):
TTATGTAAGTTATGTA
Found at i:36949991 original size:50 final size:49
Alignment explanation
Indices: 36949679--36950007 Score: 189
Period size: 50 Copynumber: 6.7 Consensus size: 49
36949669 GTTATGTGTA
* * *
36949679 ATGTAAGTTCTGTATTATGTAAGTTATTTAAGTTGTGTATTATGTAAGTC
1 ATGT-AGTTATGTGTTATGTAAGTTATTTAAGTTGTGTATTATGTAAGTT
* ** *
36949729 ATGTAGGCTATGTGTTATGTAAGTTATTATAAG-TAAG--TTATGAAAGTT
1 ATGTA-GTTATGTGTTATGTAAGTTATT-TAAGTTGTGTATTATGTAAGTT
* * * * * *
36949777 ATATA--TAAGTTTATATATAAGTTATGTAAG-T-TATA-TATGTAAGTT
1 ATGTAGTTATGTGT-TATGTAAGTTATTTAAGTTGTGTATTATGTAAGTT
* * * * *
36949822 ATGT-GTTGTGTAAGTTTATATATAAATTTTATTCAAGTTATG-A--ATGTAAGTT
1 ATGTAGTTATGT--G--T-TATGT-AA-GTTATTTAAGTTGTGTATTATGTAAGTT
* * * * *
36949874 ATGTAAGTTGTGTGTAATGTAAGTTATGTAAGTTGTGTGTAATGTAAGTT
1 ATGT-AGTTATGTGTTATGTAAGTTATTTAAGTTGTGTATTATGTAAGTT
* *
36949924 ATGTA-TTATGTAAGTTATTTAAGTTATTTAAGTTGTGTATTATGTAAGTC
1 ATGTAGTTATGT--GTTATGTAAGTTATTTAAGTTGTGTATTATGTAAGTT
*
36949974 ATGTAGGCTATGTGTTATGTAAGTTATTATAAGT
1 ATGTA-GTTATGTGTTATGTAAGTTATT-TAAGT
36950008 AAGTTATGAA
Statistics
Matches: 215, Mismatches: 39, Indels: 49
0.71 0.13 0.16
Matches are distributed among these distances:
45 22 0.10
46 14 0.07
47 11 0.05
48 20 0.09
49 5 0.02
50 96 0.45
51 11 0.05
52 26 0.12
53 2 0.01
54 8 0.04
ACGTcount: A:0.32, C:0.02, G:0.20, T:0.46
Consensus pattern (49 bp):
ATGTAGTTATGTGTTATGTAAGTTATTTAAGTTGTGTATTATGTAAGTT
Found at i:36950020 original size:23 final size:24
Alignment explanation
Indices: 36949987--36950031 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
36949977 TAGGCTATGT
*
36949987 GTTATGTAAGTTAT-TATAAGTAA
1 GTTATGAAAGTTATATATAAGTAA
36950010 GTTATGAAAGTTATATATAAGT
1 GTTATGAAAGTTATATATAAGT
36950032 TTATATATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.40, C:0.00, G:0.18, T:0.42
Consensus pattern (24 bp):
GTTATGAAAGTTATATATAAGTAA
Found at i:36950036 original size:32 final size:32
Alignment explanation
Indices: 36950000--36950193 Score: 126
Period size: 32 Copynumber: 6.2 Consensus size: 32
36949990 ATGTAAGTTA
*
36950000 TTATAAGTAAGTTATGAAAGTTATATATAAGT
1 TTATAAGTAAGTTATGTAAGTTATATATAAGT
* *
36950032 TTATATA-TAAGTTATGTAAGTTATTGTGTAAG-
1 TTATA-AGTAAGTTATGTAAGTTA-TATATAAGT
* *
36950064 TTAT--GT-A-TTGTGTAAGTTTATATATAAATT
1 TTATAAGTAAGTTATGTAAG-TTATATAT-AAGT
*
36950094 TTATTTAAGTTA-TGTATGTAAGTTATATATAAGT
1 TTA--TAAGTAAGT-TATGTAAGTTATATATAAGT
*
36950128 TTATATA-TAAGTTATGTAAGTTATCATGTAAG-
1 TTATA-AGTAAGTTATGTAAGTTAT-ATATAAGT
* *
36950160 TTAT--GT--GTTGTGTAAGTTTATATATAAAT
1 TTATAAGTAAGTTATGTAAG-TTATATATAAGT
36950189 TTATA
1 TTATA
36950194 TATGTTATGT
Statistics
Matches: 129, Mismatches: 14, Indels: 40
0.70 0.08 0.22
Matches are distributed among these distances:
28 25 0.19
29 14 0.11
30 5 0.04
32 45 0.35
33 15 0.12
34 8 0.06
35 10 0.08
36 7 0.05
ACGTcount: A:0.36, C:0.01, G:0.15, T:0.48
Consensus pattern (32 bp):
TTATAAGTAAGTTATGTAAGTTATATATAAGT
Found at i:36950051 original size:21 final size:21
Alignment explanation
Indices: 36950027--36950165 Score: 66
Period size: 21 Copynumber: 6.0 Consensus size: 21
36950017 AAGTTATATA
36950027 TAAGTTTATATATAAGTTATG
1 TAAGTTTATATATAAGTTATG
* *
36950048 TAAG-TTATTGTGTAAGTTATGTATTG
1 TAAGTTTA-TATATAAG---T-TA-TG
* *
36950074 TGTAAGTTTATATATAAATTTTATT
1 --TAAGTTTATATATA-A-GTTATG
* * *
36950099 TAAGTTATGTATGTAAGTTATATA
1 TAAGTT-TATATATAAG-T-TATG
36950123 TAAGTTTATATATAAGTTATG
1 TAAGTTTATATATAAGTTATG
*
36950144 TAAG-TTATCATGTAAGTTATG
1 TAAGTTTAT-ATATAAGTTATG
36950165 T
1 T
36950166 GTTGTGTAAG
Statistics
Matches: 89, Mismatches: 14, Indels: 30
0.67 0.11 0.23
Matches are distributed among these distances:
20 7 0.08
21 29 0.33
22 1 0.01
23 16 0.18
24 16 0.18
25 3 0.03
26 4 0.04
27 1 0.01
28 8 0.09
29 4 0.04
ACGTcount: A:0.35, C:0.01, G:0.16, T:0.49
Consensus pattern (21 bp):
TAAGTTTATATATAAGTTATG
Found at i:36950085 original size:49 final size:49
Alignment explanation
Indices: 36950027--36950215 Score: 208
Period size: 49 Copynumber: 3.9 Consensus size: 49
36950017 AAGTTATATA
*
36950027 TAAGTTTATATATAAGTTATGTAAGTTATTGTGTAAGTTATGTATTGTG
1 TAAGTTTATATATAAGTTATGTAAGTTATTATGTAAGTTATGTATTGTG
* * *
36950076 TAAGTTTATATATAAATTTTATTTAAGTTATGTATGTAAGTTA--TA---TA
1 TAAGTTTATATAT-AA-GTTATGTAAGTTAT-TATGTAAGTTATGTATTGTG
* *
36950123 TAAGTTTATATATAAGTTATGTAAGTTATCATGTAAGTTATGTGTTGTG
1 TAAGTTTATATATAAGTTATGTAAGTTATTATGTAAGTTATGTATTGTG
* * * *
36950172 TAAGTTTATATATAAATTTATATATGTTATGTATGTAAATTATG
1 TAAGTTTATATAT-AAGTTATGTAAGTTAT-TATGTAAGTTATG
36950216 ATATGATTGA
Statistics
Matches: 116, Mismatches: 14, Indels: 18
0.78 0.09 0.12
Matches are distributed among these distances:
44 10 0.09
45 12 0.10
46 3 0.03
47 14 0.12
49 27 0.23
50 17 0.15
51 23 0.20
52 10 0.09
ACGTcount: A:0.34, C:0.01, G:0.16, T:0.49
Consensus pattern (49 bp):
TAAGTTTATATATAAGTTATGTAAGTTATTATGTAAGTTATGTATTGTG
Found at i:36950103 original size:96 final size:97
Alignment explanation
Indices: 36949997--36950219 Score: 321
Period size: 96 Copynumber: 2.3 Consensus size: 97
36949987 GTTATGTAAG
**
36949997 TTATTATAAGTAA-GTTATGAAAGTTATATATAAGTTTATATATAAGTTATGTAAGTTATTGTGT
1 TTATTATAAGTAATG-TATGAAAGTTATATATAAGTTTATATATAAGTTATGTAAGTTATCATGT
36950061 AAGTTATGTATTGTGTAAGTTTATATATAAATT
65 AAGTTATGTATTGTGTAAGTTTATATATAAATT
* *
36950094 TTATT-TAAGTTATGTATGTAAGTTATATATAAGTTTATATATAAGTTATGTAAGTTATCATGTA
1 TTATTATAAGTAATGTATGAAAGTTATATATAAGTTTATATATAAGTTATGTAAGTTATCATGTA
*
36950158 AGTTATGTGTTGTGTAAGTTTATATATAAA-T
66 AGTTATGTATTGTGTAAGTTTATATATAAATT
* *
36950189 TTA-TATATGTTATGTATGTAAA-TTATGATAT
1 TTATTATAAGTAATGTATG-AAAGTTAT-ATAT
36950220 GATTGATAAA
Statistics
Matches: 115, Mismatches: 7, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
94 1 0.01
95 20 0.17
96 88 0.77
97 6 0.05
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.48
Consensus pattern (97 bp):
TTATTATAAGTAATGTATGAAAGTTATATATAAGTTTATATATAAGTTATGTAAGTTATCATGTA
AGTTATGTATTGTGTAAGTTTATATATAAATT
Found at i:36950139 original size:36 final size:37
Alignment explanation
Indices: 36950060--36950145 Score: 113
Period size: 36 Copynumber: 2.3 Consensus size: 37
36950050 AGTTATTGTG
*
36950060 TAAGTTATGTATTGTGTAAGTTTATATATAAATTTTATT
1 TAAGTTATGTA-T-TGTAAGTTTATATATAAATTTTATA
*
36950099 TAAGTTATGTA-TGTAAG-TTATATATAAGTTTATATA
1 TAAGTTATGTATTGTAAGTTTATATATAAATTT-TATA
36950135 TAAGTTATGTA
1 TAAGTTATGTA
36950146 AGTTATCATG
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
35 13 0.30
36 20 0.45
39 11 0.25
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (37 bp):
TAAGTTATGTATTGTAAGTTTATATATAAATTTTATA
Found at i:36950156 original size:12 final size:11
Alignment explanation
Indices: 36949989--36950163 Score: 83
Period size: 12 Copynumber: 15.1 Consensus size: 11
36949979 GGCTATGTGT
36949989 TATGTAAGTTA
1 TATGTAAGTTA
36950000 TTATAAGTAAG-T-
1 -TAT--GTAAGTTA
*
36950012 TATGAAAGTTA
1 TATGTAAGTTA
*
36950023 TATATAAGTTTA
1 TATGTAAG-TTA
*
36950035 TATATAAG-T-
1 TATGTAAGTTA
36950044 TATGTAAGTTA
1 TATGTAAGTTA
*
36950055 TTGTGTAAGTTA
1 -TATGTAAGTTA
36950067 TGTATTGTGTAAGTTTA
1 --TA---TGTAAG-TTA
* * *
36950084 TATATAAATTT
1 TATGTAAGTTA
*
36950095 TATTTAAGTTA
1 TATGTAAGTTA
36950106 TGTATGTAAGTTA
1 --TATGTAAGTTA
*
36950119 TATATAAGTTTA
1 TATGTAAG-TTA
*
36950131 TATATAAG-T-
1 TATGTAAGTTA
36950140 TATGTAAGTTA
1 TATGTAAGTTA
36950151 TCATGTAAGTTA
1 T-ATGTAAGTTA
36950163 T
1 T
36950164 GTGTTGTGTA
Statistics
Matches: 128, Mismatches: 16, Indels: 38
0.70 0.09 0.21
Matches are distributed among these distances:
9 18 0.14
10 5 0.04
11 27 0.21
12 50 0.39
13 12 0.09
14 5 0.04
15 2 0.02
16 6 0.05
17 3 0.02
ACGTcount: A:0.37, C:0.01, G:0.15, T:0.47
Consensus pattern (11 bp):
TATGTAAGTTA
Found at i:36950264 original size:19 final size:19
Alignment explanation
Indices: 36950225--36950269 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
36950215 GATATGATTG
*
36950225 ATAAATTTTTCAAATATAT
1 ATAAAATTTTCAAATATAT
36950244 ATAAAATTTT-AATATATAT
1 ATAAAATTTTCAA-ATATAT
36950263 ATTAAAA
1 A-TAAAA
36950270 CTGTATATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 2 0.09
19 16 0.70
20 5 0.22
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (19 bp):
ATAAAATTTTCAAATATAT
Found at i:36950264 original size:21 final size:22
Alignment explanation
Indices: 36950236--36950288 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
36950226 TAAATTTTTC
* *
36950236 AAATATATATAAAATTTTA-AT
1 AAATATATATAAAACTGTATAT
*
36950257 ATATATAT-TAAAACTGTATAT
1 AAATATATATAAAACTGTATAT
36950278 AAATATATATA
1 AAATATATATA
36950289 TCAAAGATGT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 8 0.31
21 16 0.62
22 2 0.08
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (22 bp):
AAATATATATAAAACTGTATAT
Found at i:36952978 original size:21 final size:21
Alignment explanation
Indices: 36952912--36952978 Score: 59
Period size: 20 Copynumber: 3.2 Consensus size: 21
36952902 TATGTTTCAT
36952912 TAAAA-TTTTAAGTAAATAATTA
1 TAAAAGTTTTAAGT-AA-AATTA
* *
36952934 TTAAAGTTTTAAGTAATATT-
1 TAAAAGTTTTAAGTAAAATTA
*
36952954 TAAAAGTTTT-TGATAAAATTA
1 TAAAAGTTTTAAG-TAAAATTA
36952975 TAAA
1 TAAA
36952979 TTTTAGTTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
19 1 0.03
20 15 0.41
21 7 0.19
22 6 0.16
23 8 0.22
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.43
Consensus pattern (21 bp):
TAAAAGTTTTAAGTAAAATTA
Found at i:36953672 original size:7 final size:8
Alignment explanation
Indices: 36953657--36953719 Score: 60
Period size: 8 Copynumber: 8.1 Consensus size: 8
36953647 ACCCTTGACA
36953657 CCCTAAAC
1 CCCTAAAC
36953665 CCCT-AAC
1 CCCTAAAC
*
36953672 CCTTAAAC
1 CCCTAAAC
36953680 CCCTTAAAC
1 CCC-TAAAC
*
36953689 CCTTAAA-
1 CCCTAAAC
*
36953696 CCCTTAAC
1 CCCTAAAC
*
36953704 CTCT-AAC
1 CCCTAAAC
36953711 CCCTAAAC
1 CCCTAAAC
36953719 C
1 C
36953720 TCAATCCCAA
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
7 17 0.39
8 20 0.45
9 7 0.16
ACGTcount: A:0.33, C:0.46, G:0.00, T:0.21
Consensus pattern (8 bp):
CCCTAAAC
Found at i:36953691 original size:17 final size:17
Alignment explanation
Indices: 36953656--36953702 Score: 66
Period size: 17 Copynumber: 3.0 Consensus size: 17
36953646 TACCCTTGAC
36953656 ACCC-TAAACCCC-T-A
1 ACCCTTAAACCCCTTAA
36953670 ACCCTTAAACCCCTTAA
1 ACCCTTAAACCCCTTAA
36953687 ACCCTTAAA-CCCTTAA
1 ACCCTTAAACCCCTTAA
36953703 CCTCTAACCC
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
14 4 0.13
15 8 0.27
16 8 0.27
17 10 0.33
ACGTcount: A:0.36, C:0.43, G:0.00, T:0.21
Consensus pattern (17 bp):
ACCCTTAAACCCCTTAA
Done.