Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60343961
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 596159 characters in sequence are not A, C, G, or T
File 119 of 204
Found at i:36953719 original size:15 final size:15
Alignment explanation
Indices: 36953662--36953721 Score: 52
Period size: 15 Copynumber: 3.9 Consensus size: 15
36953652 TGACACCCTA
*
36953662 AACCCCTAACCCT-T
1 AACCCCTAAACCTCT
36953676 AAACCCCTTAAACC-CTT
1 -AACCCC-TAAACCTC-T
* *
36953693 AAACCCTTAACCTCT
1 AACCCCTAAACCTCT
36953708 AACCCCTAAACCTC
1 AACCCCTAAACCTC
36953722 AATCCCAAAC
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
15 24 0.67
16 11 0.31
17 1 0.03
ACGTcount: A:0.33, C:0.45, G:0.00, T:0.22
Consensus pattern (15 bp):
AACCCCTAAACCTCT
Found at i:36954001 original size:88 final size:89
Alignment explanation
Indices: 36953882--36954044 Score: 265
Period size: 88 Copynumber: 1.8 Consensus size: 89
36953872 CCCCAAACCC
* * *
36953882 CTAACCACTAACCCCTAAATATTATTTAATATATAAATTAAAAAACACTAATTAATCTAAATCCT
1 CTAACCACCAACCCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAAACTAAATCCT
36953947 AAACCCTAACTCGACCTCGAATCA
66 AAACCCTAACTCGACCTCGAATCA
* * *
36953971 CTAACC-CCAACCCTTAAACATTATTTAATATATAAATTAAAAAATACTAATTAAACTAAATCTT
1 CTAACCACCAACCCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAAACTAAATCCT
36954035 AAACCCTAAC
66 AAACCCTAAC
36954045 CCCTAAACAT
Statistics
Matches: 68, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
88 62 0.91
89 6 0.09
ACGTcount: A:0.47, C:0.23, G:0.01, T:0.29
Consensus pattern (89 bp):
CTAACCACCAACCCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAAACTAAATCCT
AAACCCTAACTCGACCTCGAATCA
Found at i:36954046 original size:63 final size:63
Alignment explanation
Indices: 36953973--36954108 Score: 200
Period size: 63 Copynumber: 2.2 Consensus size: 63
36953963 TCGAATCACT
* * * * *
36953973 AACCCCAACCCTTAAACATTATTTAATATATAAATTAAAAAATACTAATTAAACTAAATCTTA
1 AACCCTAACCCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAAACTAAACCCTA
* *
36954036 AACCCTAACCCCTAAACATTATTTAATATATAAATTAAAATACACTAATTAATCTAAACCCTA
1 AACCCTAACCCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAAACTAAACCCTA
*
36954099 AACTCTAACC
1 AACCCTAACC
36954109 TAACACCAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
63 65 1.00
ACGTcount: A:0.49, C:0.21, G:0.00, T:0.30
Consensus pattern (63 bp):
AACCCTAACCCCTAAACATTATTTAATATATAAATTAAAAAACACTAATTAAACTAAACCCTA
Found at i:36954225 original size:14 final size:15
Alignment explanation
Indices: 36954202--36954234 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
36954192 CTTAAATTAG
36954202 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
*
36954216 AATCCGTAATTCCAT
1 AATCCCTAATTCCAT
36954231 AATC
1 AATC
36954235 TATAAACCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.36, C:0.30, G:0.03, T:0.30
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:36954698 original size:41 final size:41
Alignment explanation
Indices: 36954619--36954920 Score: 250
Period size: 41 Copynumber: 7.4 Consensus size: 41
36954609 TAAAATGTTG
** * * * *
36954619 AAAAAGCGCCGCTAAATCTCGGAGCATTAGCAGTGCTTTCCC
1 AAAAA-CGCCGCTAAAGATCTGAGCATTAGCGGCGCTTTTCC
* * *
36954661 AAAAACGCCGCTAAAGATCTGAGTACTAGCGGCGCTTTTCT
1 AAAAACGCCGCTAAAGATCTGAGCATTAGCGGCGCTTTTCC
* * * * *
36954702 ATAAACGCCGCTAAAGATTTGAGCA-TCGCGGCGATTTTGGC
1 AAAAACGCCGCTAAAGATCTGAGCATTAGCGGCGCTTTT-CC
* * * * * *
36954743 -AAAACGCCGATAAAAGATCTGAGCACTAGCAGCACTTCTAC
1 AAAAACGCCGCT-AAAGATCTGAGCATTAGCGGCGCTTTTCC
* * * *
36954784 AGAAATGCCGCTAAATATCTGAGCATTACCGGCGCTTTTCC
1 AAAAACGCCGCTAAAGATCTGAGCATTAGCGGCGCTTTTCC
* * * * *
36954825 AAAAACGCTGTTAAAGATCTAAGCATTAGCGGCGCTTAT-G
1 AAAAACGCCGCTAAAGATCTGAGCATTAGCGGCGCTTTTCC
* * **
36954865 AAAAACGCCGCTAAAGATCTGGGAATTAGCGGCGCTTTTTT
1 AAAAACGCCGCTAAAGATCTGAGCATTAGCGGCGCTTTTCC
*
36954906 TAAAACGCCGCTAAA
1 AAAAACGCCGCTAAA
36954921 TCCCCGAAAG
Statistics
Matches: 203, Mismatches: 52, Indels: 11
0.76 0.20 0.04
Matches are distributed among these distances:
40 53 0.26
41 129 0.64
42 21 0.10
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (41 bp):
AAAAACGCCGCTAAAGATCTGAGCATTAGCGGCGCTTTTCC
Found at i:36956714 original size:20 final size:20
Alignment explanation
Indices: 36956689--36956738 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
36956679 TGGCTTAAAA
36956689 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
36956709 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
36956726 GTGGTAGTGGATT
1 TTGGTAGTGGATT
36956739 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:36961355 original size:20 final size:20
Alignment explanation
Indices: 36961330--36961379 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
36961320 TGGCTTAAAA
36961330 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
36961350 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
36961367 GTGGTAGTGGATT
1 TTGGTAGTGGATT
36961380 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:36964619 original size:2 final size:2
Alignment explanation
Indices: 36964607--36964648 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
36964597 TTTGTACTAT
*
36964607 GA GA GA CA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
36964649 CCATATATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.02, G:0.48, T:0.00
Consensus pattern (2 bp):
GA
Found at i:36971272 original size:30 final size:31
Alignment explanation
Indices: 36971217--36971278 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
36971207 TGGGTACGAT
36971217 GATAAGACACATTGCAATCCCAAGTGGAGAC
1 GATAAGACACATTGCAATCCCAAGTGGAGAC
36971248 GATAAGACACATTGCAAT-CCAAGTGGAGAC
1 GATAAGACACATTGCAATCCCAAGTGGAGAC
36971278 G
1 G
36971279 CAAGTTCGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 13 0.42
31 18 0.58
ACGTcount: A:0.39, C:0.21, G:0.24, T:0.16
Consensus pattern (31 bp):
GATAAGACACATTGCAATCCCAAGTGGAGAC
Found at i:36978076 original size:25 final size:25
Alignment explanation
Indices: 36978029--36978076 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
36978019 TTTTTTATTA
**
36978029 AAAAACAAAAAATTTAGTTGTCGAC
1 AAAAACAAAAAATTTAGGAGTCGAC
* *
36978054 AAAAACGAAAAATTTGGGAGTCG
1 AAAAACAAAAAATTTAGGAGTCG
36978077 CCACCGATCT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.50, C:0.10, G:0.19, T:0.21
Consensus pattern (25 bp):
AAAAACAAAAAATTTAGGAGTCGAC
Found at i:36978214 original size:21 final size:21
Alignment explanation
Indices: 36978190--36978233 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
36978180 TTAGCACCCT
36978190 CGTAACGCCCAAAATTGGTAC
1 CGTAACGCCCAAAATTGGTAC
36978211 CGTAACGCCCAAAATTGGTAC
1 CGTAACGCCCAAAATTGGTAC
36978232 CG
1 CG
36978234 AGCTGATTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.32, C:0.30, G:0.20, T:0.18
Consensus pattern (21 bp):
CGTAACGCCCAAAATTGGTAC
Found at i:36979107 original size:28 final size:28
Alignment explanation
Indices: 36979076--36979149 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 28
36979066 ATATGTATAC
*
36979076 ATTAAAAGGTTAAAATAAGTTTGA-ATAA
1 ATTAAAATGTTAAAATAAG-TTGAGATAA
* *
36979104 ATTAACAATATTGAAATAAGTTGAGATAA
1 ATTAA-AATGTTAAAATAAGTTGAGATAA
36979133 ATTAAAATGTTAAAATA
1 ATTAAAATGTTAAAATA
36979150 TTGGAAAGAG
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
28 19 0.49
29 20 0.51
ACGTcount: A:0.54, C:0.01, G:0.12, T:0.32
Consensus pattern (28 bp):
ATTAAAATGTTAAAATAAGTTGAGATAA
Found at i:36979448 original size:23 final size:24
Alignment explanation
Indices: 36979413--36979457 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
36979403 TGGAAATTTA
*
36979413 AATAATGATACATAATAAATTTTG
1 AATAATGAAACATAATAAATTTTG
**
36979437 AATAAT-AAACATGGTAAATTT
1 AATAATGAAACATAATAAATTT
36979458 ATATAATATT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 12 0.67
24 6 0.33
ACGTcount: A:0.51, C:0.04, G:0.09, T:0.36
Consensus pattern (24 bp):
AATAATGAAACATAATAAATTTTG
Found at i:36980172 original size:20 final size:19
Alignment explanation
Indices: 36980138--36980204 Score: 61
Period size: 20 Copynumber: 3.6 Consensus size: 19
36980128 TTTTTCGTAT
36980138 AGAAAACAGAAAGAAACAA
1 AGAAAACAGAAAGAAACAA
*
36980157 AGAAAACACTAAAGAAACGCAA
1 AGAAAACA-GAAAGAAA--CAA
*
36980179 AG-AAAGAGAAAG-AA-AA
1 AGAAAACAGAAAGAAACAA
36980195 AGAAAA-AGAA
1 AGAAAACAGAA
36980205 CCACCTTAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
16 8 0.20
17 3 0.07
19 10 0.24
20 11 0.27
21 4 0.10
22 5 0.12
ACGTcount: A:0.72, C:0.09, G:0.18, T:0.01
Consensus pattern (19 bp):
AGAAAACAGAAAGAAACAA
Found at i:36980766 original size:15 final size:14
Alignment explanation
Indices: 36980721--36980767 Score: 51
Period size: 15 Copynumber: 3.3 Consensus size: 14
36980711 ACTTTTAATA
36980721 ATTTTGTTTTTATTT
1 ATTTT-TTTTTATTT
* *
36980736 -TTATTTTTTATAT
1 ATTTTTTTTTATTT
36980749 ATTTTTTGTTTATTT
1 ATTTTTT-TTTATTT
36980764 ATTT
1 ATTT
36980768 GATTTGGGCC
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
13 8 0.31
14 8 0.31
15 10 0.38
ACGTcount: A:0.17, C:0.00, G:0.04, T:0.79
Consensus pattern (14 bp):
ATTTTTTTTTATTT
Found at i:36981260 original size:46 final size:45
Alignment explanation
Indices: 36981048--36982149 Score: 433
Period size: 44 Copynumber: 25.1 Consensus size: 45
36981038 CTGTTCCACT
*
36981048 ATAAGATCTGTAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAG
1 ATAAGATCTGT-ATTCTTCGATCTATTCCACTGTAATCTCAGGGAG
* * * * *
36981094 ATAAGACCTG-A---TGCGATCTACTCTACTGTAA-CTTCAGAGAG
1 ATAAGATCTGTATTCTTCGATCTATTCCACTGTAATC-TCAGGGAG
* * * * * *
36981135 ATAAGATCCTTTATT-TT-AAT-TCCTTCCACTATAATCTCAAGGAA
1 ATAAGAT-CTGTATTCTTCGATCT-ATTCCACTGTAATCTCAGGGAG
* * * ** *
36981179 ATAGGA--T-TACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
1 ATAAGATCTGTA-T-TCTTCGATCTATTCCACTGTAATCTCAGGGAG
* *
36981223 ATAAGCTCTGTAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAG
1 ATAAGATCTGT-ATTCTTCGATCTATTCCACTGTAATCTCAGGGAG
* * * * *
36981269 ATAAGACCTG-A---TGCGATCTACTCTACTGTAA-CTTCAGAGAG
1 ATAAGATCTGTATTCTTCGATCTATTCCACTGTAATC-TCAGGGAG
* * ** *
36981310 ATAAGATCCTTTATT-TT-AATCCGTTCCACTGTAATCTCAGGGAA
1 ATAAGAT-CTGTATTCTTCGATCTATTCCACTGTAATCTCAGGGAG
* * ** *
36981354 ATAGGA--T-TATTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
1 ATAAGATCTGTATT--CTTCGATCTATTCCACTGTAATCTCAGGGAG
* *
36981398 ATAAGATCTGTAATTCTTCGGTCTATTCCACTATAATCTCAGGGAG
1 ATAAGATCTGT-ATTCTTCGATCTATTCCACTGTAATCTCAGGGAG
* * * * *
36981444 ATAAGACCTG-A---TGCGATCTACTCTACTGTAA-CTTCAGAGAG
1 ATAAGATCTGTATTCTTCGATCTATTCCACTGTAATC-TCAGGGAG
* * * * * *
36981485 ATAAGATCATTTATT-TT-AAT-TCCTTCCACTGTAATCTCAAGAAA
1 ATAAGATC-TGTATTCTTCGATCT-ATTCCACTGTAATCTCAGGGAG
* * * ** ** *
36981529 ATAGGA--T-TACTGGCTTCAATCTGCTCTGCTGTAATCTCAAGGAG
1 ATAAGATCTGTA-T-TCTTCGATCTATTCCACTGTAATCTCAGGGAG
* *
36981573 ATAAGATCTGTAATTCTTTGGTCTATTCCACTGTAATCTCAGGGAG
1 ATAAGATCTGT-ATTCTTCGATCTATTCCACTGTAATCTCAGGGAG
* * * * *
36981619 ATAAGACCTG-A---TACGATCTACTCTACTGTAA-CTTCAGAGAG
1 ATAAGATCTGTATTCTTCGATCTATTCCACTGTAATC-TCAGGGAG
* * ** *
36981660 ATAAGATCCTTTATT-TT-AATCCGTTCCACTGTAATCTCAGGGAA
1 ATAAGAT-CTGTATTCTTCGATCTATTCCACTGTAATCTCAGGGAG
* * * ** * * *
36981704 ATAGGA--T-TACTGGCTTCAATCTGCTCCGCTGTAATTTTAGGGAG
1 ATAAGATCTGTA-T-TCTTCGATCTATTCCACTGTAATCTCAGGGAG
*
36981748 ATAAGATCTGTAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAG
1 ATAAGATCTGT-ATTCTTCGATCTATTCCACTGTAATCTCAGGGAG
* * * *
36981794 ATAAGACCTG-A---TGCGATCTACTT-TACTGTAA-CTTCAGAGAG
1 ATAAGATCTGTATTCTTCGATCTA-TTCCACTGTAATC-TCAGGGAG
* * ** * *
36981835 ATAAGATCCTTTATT-TT-AATCCGTTCCACTGTAATCTCAAGGAA
1 ATAAGAT-CTGTATTCTTCGATCTATTCCACTGTAATCTCAGGGAG
* * * ** *
36981879 ATAGGA--T-TACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
1 ATAAGATCTGTA-T-TCTTCGATCTATTCCACTGTAATCTCAGGGAG
* *
36981923 ATAAGATCTGTAATTCTTCGGTCTATTCCACTGTAATCTGAGGGAG
1 ATAAGATCTGT-ATTCTTCGATCTATTCCACTGTAATCTCAGGGAG
* * * *
36981969 ATAAGACCTG-A---TGCGATCTACTT-TACTGTAA-CTTCAGAGAG
1 ATAAGATCTGTATTCTTCGATCTA-TTCCACTGTAATC-TCAGGGAG
* * ** *
36982010 ATAAGATCCTTTATT-TT-AATCCGTTCCACTGTAATCTCAGGGAA
1 ATAAGAT-CTGTATTCTTCGATCTATTCCACTGTAATCTCAGGGAG
* * * ** * *
36982054 ATAGGA--T-TACTGGCTTCAATCTGCTCCGCTGTAATTTCAGGGAG
1 ATAAGATCTGTA-T-TCTTCGATCTATTCCACTGTAATCTCAGGGAG
*
36982098 ATAAGATCTGTAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAG
1 ATAAGATCTGT-ATTCTTCGATCTATTCCACTGTAATCTCAGGGAG
36982144 ATAAGA
1 ATAAGA
36982150 CCTGATGCGA
Statistics
Matches: 772, Mismatches: 192, Indels: 184
0.67 0.17 0.16
Matches are distributed among these distances:
40 20 0.03
41 179 0.23
42 15 0.02
43 24 0.03
44 288 0.37
45 14 0.02
46 213 0.28
47 11 0.01
48 8 0.01
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (45 bp):
ATAAGATCTGTATTCTTCGATCTATTCCACTGTAATCTCAGGGAG
Found at i:36981347 original size:175 final size:175
Alignment explanation
Indices: 36981048--36982289 Score: 2245
Period size: 175 Copynumber: 7.1 Consensus size: 175
36981038 CTGTTCCACT
36981048 ATAAGATCTGTAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCT
1 ATAAGATCTGTAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCT
*
36981113 ACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATTCC-TTCCACTATAATCTCAAGG
66 ACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAA-TCCGTTCCACTGTAATCTCAAGG
36981177 AAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
130 AAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
*
36981223 ATAAGCTCTGTAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCT
1 ATAAGATCTGTAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCT
*
36981288 ACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGA
66 ACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAAGGA
*
36981353 AATAGGATTATTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
131 AATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
*
36981398 ATAAGATCTGTAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATGCGATCT
1 ATAAGATCTGTAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCT
* *
36981463 ACTCTACTGTAACTTCAGAGAGATAAGATCATTTATTTTAATTCC-TTCCACTGTAATCTCAAGA
66 ACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAA-TCCGTTCCACTGTAATCTCAAGG
* *
36981527 AAATAGGATTACTGGCTTCAATCTGCTCTGCTGTAATCTCAAGGAG
130 AAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
* *
36981573 ATAAGATCTGTAATTCTTTGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATACGATCT
1 ATAAGATCTGTAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCT
*
36981638 ACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGA
66 ACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAAGGA
* *
36981703 AATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATTTTAGGGAG
131 AATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
36981748 ATAAGATCTGTAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCT
1 ATAAGATCTGTAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCT
*
36981813 ACTTTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAAGGA
66 ACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAAGGA
36981878 AATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
131 AATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
*
36981923 ATAAGATCTGTAATTCTTCGGTCTATTCCACTGTAATCTGAGGGAGATAAGACCTGATGCGATCT
1 ATAAGATCTGTAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCT
* *
36981988 ACTTTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGA
66 ACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAAGGA
*
36982053 AATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATTTCAGGGAG
131 AATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
36982098 ATAAGATCTGTAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCT
1 ATAAGATCTGTAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCT
* *
36982163 ACTTTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATATCAAGGA
66 ACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAAGGA
* *
36982228 AAAAGGATTACTGGCTTCAATCTGCTCCACTGTAATCTCAGGGAG
131 AATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
36982273 ATAAGATCTGTAATTCT
1 ATAAGATCTGTAATTCT
36982290 CTAATCTGTT
Statistics
Matches: 1027, Mismatches: 37, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
174 6 0.01
175 1018 0.99
176 3 0.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (175 bp):
ATAAGATCTGTAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCT
ACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAAGGA
AATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
Found at i:36994328 original size:28 final size:28
Alignment explanation
Indices: 36994251--36994328 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
36994241 TATAATATGT
*
36994251 ATAAATTAAAAGGTTAAAATAAGTTTGA
1 ATAAATTAAAATGTTAAAATAAGTTTGA
* *
36994279 ATAAATTAACAATATTGAAATAAG-TTGA
1 ATAAATTAA-AATGTTAAAATAAGTTTGA
36994307 GATAAATTAAAATGTTAAAATA
1 -ATAAATTAAAATGTTAAAATA
36994329 TTGGAAAGAG
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
28 23 0.53
29 20 0.47
ACGTcount: A:0.55, C:0.01, G:0.12, T:0.32
Consensus pattern (28 bp):
ATAAATTAAAATGTTAAAATAAGTTTGA
Found at i:37005425 original size:20 final size:20
Alignment explanation
Indices: 37005400--37005438 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
37005390 TCTAACTAGT
37005400 TTTGAACATTTTTA-TATATA
1 TTTGAA-ATTTTTACTATATA
*
37005420 TTTGAATTTTTTACTATAT
1 TTTGAAATTTTTACTATAT
37005439 TTTTATTTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (20 bp):
TTTGAAATTTTTACTATATA
Found at i:37007350 original size:15 final size:15
Alignment explanation
Indices: 37007330--37007365 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
37007320 TAGGGAAGGA
*
37007330 AATGATCCTGGCCTG
1 AATGATCCTGGCCTC
*
37007345 AATGATCCTGGTCTC
1 AATGATCCTGGCCTC
37007360 AATGAT
1 AATGAT
37007366 GAGCCATTGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (15 bp):
AATGATCCTGGCCTC
Found at i:37011176 original size:17 final size:17
Alignment explanation
Indices: 37011156--37011193 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
37011146 AGTCGTCTAT
*
37011156 TTTTCTTTATTTATTTA
1 TTTTCATTATTTATTTA
37011173 TTTTCATTATTTATTTA
1 TTTTCATTATTTATTTA
37011190 TTTT
1 TTTT
37011194 TATTTCCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.18, C:0.05, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTCATTATTTATTTA
Found at i:37012338 original size:18 final size:18
Alignment explanation
Indices: 37012312--37012353 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
37012302 AAAATATACA
*
37012312 AATACTAAATAAAATTAAT
1 AATA-TAAATAAAAATAAT
*
37012331 TATATAAATAAAAATAAT
1 AATATAAATAAAAATAAT
37012349 AATAT
1 AATAT
37012354 GTGGGAGATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 17 0.85
19 3 0.15
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (18 bp):
AATATAAATAAAAATAAT
Found at i:37014769 original size:29 final size:29
Alignment explanation
Indices: 37014727--37014785 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
37014717 TCTTACATTT
37014727 CTGAAATGAATATGGGCCCATTCATCCAC
1 CTGAAATGAATATGGGCCCATTCATCCAC
*
37014756 CTGAAATGAATATGGGCCCATTCATTCAC
1 CTGAAATGAATATGGGCCCATTCATCCAC
37014785 C
1 C
37014786 ATGTGAATGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (29 bp):
CTGAAATGAATATGGGCCCATTCATCCAC
Found at i:37019119 original size:42 final size:42
Alignment explanation
Indices: 37019058--37019159 Score: 177
Period size: 42 Copynumber: 2.4 Consensus size: 42
37019048 TTTACATCAT
* *
37019058 TGCTCACACGAGCTATGGGTCAAAATGTAAGCTATACGATAC
1 TGCTCACACGAGCTGTGGGTCAAAATGTAAGCTACACGATAC
*
37019100 TGCTCACACGAGCTGTGGGTCAAAATGTAAGCTACATGATAC
1 TGCTCACACGAGCTGTGGGTCAAAATGTAAGCTACACGATAC
37019142 TGCTCACACGAGCTGTGG
1 TGCTCACACGAGCTGTGG
37019160 AGTATCCGCA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 57 1.00
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.24
Consensus pattern (42 bp):
TGCTCACACGAGCTGTGGGTCAAAATGTAAGCTACACGATAC
Found at i:37026213 original size:28 final size:27
Alignment explanation
Indices: 37026154--37026213 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 27
37026144 TATAAGTCCA
** *
37026154 AAAAATAAAATAAAAATAGTTAACAAT
1 AAAAATAAAATAAAAATAAATAAAAAT
37026181 AAAAATAAAAATAAAAATAAATAAAACAT
1 AAAAAT-AAAATAAAAATAAATAAAA-AT
37026210 AAAA
1 AAAA
37026214 CTAATACTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 6 0.21
28 16 0.57
29 6 0.21
ACGTcount: A:0.77, C:0.03, G:0.02, T:0.18
Consensus pattern (27 bp):
AAAAATAAAATAAAAATAAATAAAAAT
Found at i:37026214 original size:7 final size:6
Alignment explanation
Indices: 37026154--37026213 Score: 54
Period size: 6 Copynumber: 9.7 Consensus size: 6
37026144 TATAAGTCCA
37026154 AAAAAT -AAAAT AAAAAT AGTTAACAAT AAAAAT AAAAAT AAAAAT --AAAT
1 AAAAAT AAAAAT AAAAAT A---AA-AAT AAAAAT AAAAAT AAAAAT AAAAAT
37026203 AAAACAT AAAA
1 AAAA-AT AAAA
37026214 CTAATACTGT
Statistics
Matches: 46, Mismatches: 0, Indels: 15
0.75 0.00 0.25
Matches are distributed among these distances:
4 4 0.09
5 5 0.11
6 23 0.50
7 8 0.17
9 2 0.04
10 4 0.09
ACGTcount: A:0.77, C:0.03, G:0.02, T:0.18
Consensus pattern (6 bp):
AAAAAT
Found at i:37029902 original size:19 final size:19
Alignment explanation
Indices: 37029878--37029969 Score: 157
Period size: 19 Copynumber: 4.8 Consensus size: 19
37029868 CATAATCAAG
37029878 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
37029897 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
37029916 GATATGCAACCTTAGATAT
1 GATATGCAATCTTAGATAT
*
37029935 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
37029954 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
37029970 AGATATGATT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 67 1.00
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:37029920 original size:38 final size:38
Alignment explanation
Indices: 37029878--37029992 Score: 176
Period size: 38 Copynumber: 2.9 Consensus size: 38
37029868 CATAATCAAG
37029878 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
*
37029916 GATATGCAACCTTAGATATGATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
*
37029954 GATATGCAATCTTAGAAGATATGATTTTGTAATCTTAGA
1 GATATGCAATCTT---AGATATGA-TATGTAATCTTAGA
37029993 AATTTAATTT
Statistics
Matches: 70, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
38 49 0.70
41 8 0.11
42 13 0.19
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.38
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
Found at i:37030224 original size:23 final size:23
Alignment explanation
Indices: 37030180--37030224 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
37030170 TCTTATTTTG
* *
37030180 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTCATTTA
**
37030203 TTGATTTGTATATTGTTCATTT
1 TTGATTTGTATATAATTCATTT
37030225 CAAATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.02, G:0.13, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTCATTTA
Found at i:37030421 original size:23 final size:22
Alignment explanation
Indices: 37030377--37030422 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
37030367 GTTATTTTAG
*
37030377 TTTTTTATTATTAAATTAATTA
1 TTTTTTATTATTAAACTAATTA
37030399 TTTTATTATTATTAATACT-ATTA
1 TTTT-TTATTATTAA-ACTAATTA
37030422 T
1 T
37030423 GTGGCATCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 4 0.19
23 15 0.71
24 2 0.10
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (22 bp):
TTTTTTATTATTAAACTAATTA
Found at i:37037232 original size:175 final size:176
Alignment explanation
Indices: 37036934--37037327 Score: 510
Period size: 175 Copynumber: 2.2 Consensus size: 176
37036924 ATCAGTGAAG
** * * * *
37036934 ATAGCAGATCTTGCCTTCCTGTGCTGACAGCGAAGCAGATCTAAGACACCAGCCTTGCCTCCCTA
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCCCTA
* * * *
37036999 TGTTACAGGAGAGCAGGTTAAAAATTACAGATCTTGCCTTTCTACACTGACAGCGAAGCAGATCG
66 TGTAACAGGAGAGCAGGTTAAAAATTACAGACCTTGCCTTCCTACACCGACAGCGAAGCAGATCG
* * *
37037064 AAGACACCAGACTTACCTCCCT-GGTTGTAGCGGAGCAGTTTAAAA
131 AAGACACCAGACTTACCTCCCTGGGTTGCAGCGAAGCAGGTTAAAA
* * * *
37037109 ATAGCATATCTTGCCTTCTTGCACCGACAGCGAAGTAGATCGAAGACACAAACCTTGCCTCCTTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCCCT-
* *
37037174 GGTTGTAAC-GGA-A-CAGGTTAAAAA-TAGCAGACCTTGCCTTCCTGCACCGACAGCGAAGCAG
65 --ATGTAACAGGAGAGCAGGTTAAAAATTA-CAGACCTTGCCTTCCTACACCGACAGCGAAGCAG
* *
37037235 ATCGAAGACACCAGCCTTGCCTCCCTGGGTTGCAGCGAAGCAGGTTAAAA
127 ATCGAAGACACCAGACTTACCTCCCTGGGTTGCAGCGAAGCAGGTTAAAA
* *
37037285 ATAGCAGATCTTGCCTTCCTGCACCAACAGCAAAGCAGATCGA
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGA
37037328 TGACCCCAGC
Statistics
Matches: 188, Mismatches: 26, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
174 2 0.01
175 119 0.63
176 59 0.31
177 3 0.02
178 5 0.03
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (176 bp):
ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCCCTA
TGTAACAGGAGAGCAGGTTAAAAATTACAGACCTTGCCTTCCTACACCGACAGCGAAGCAGATCG
AAGACACCAGACTTACCTCCCTGGGTTGCAGCGAAGCAGGTTAAAA
Found at i:37037253 original size:44 final size:44
Alignment explanation
Indices: 37037205--37037338 Score: 108
Period size: 44 Copynumber: 3.0 Consensus size: 44
37037195 AAATAGCAGA
37037205 CCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAG
1 CCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAG
* **** * ** * * *
37037249 CCTTGCCTCCCTGGGTTG-CAGCGAAGCAGGTTAAAAATAGCAG
1 CCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAG
* * * * *
37037292 ATCTTGCCTTCCTGCACCAACAGCAAAGCAGATCGATGACCCCAG
1 -CCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAG
37037337 CC
1 CC
37037339 CTATCTCCCT
Statistics
Matches: 60, Mismatches: 28, Indels: 4
0.65 0.30 0.04
Matches are distributed among these distances:
43 19 0.32
44 25 0.42
45 16 0.27
ACGTcount: A:0.27, C:0.34, G:0.22, T:0.17
Consensus pattern (44 bp):
CCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAG
Found at i:37037350 original size:88 final size:88
Alignment explanation
Indices: 37036934--37037338 Score: 503
Period size: 88 Copynumber: 4.6 Consensus size: 88
37036924 ATCAGTGAAG
** * * *
37036934 ATAGCAGATCTTGCCTTCCTGTGCTGACAGCGAAGCAGATCTAAGACACCAGCCTTGCCTCCCTA
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
* *
37036999 TGTTACAG-GAGAGCAGGTTAAAA
66 GGTTGCAGCGA-AGCAGGTTAAAA
* * * * *
37037022 ATTA-CAGATCTTGCCTTTCTACACTGACAGCGAAGCAGATCGAAGACACCAGACTTACCTCCCT
1 A-TAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCT
* * *
37037086 -GGTTGTAGCGGAGCAGTTTAAAA
65 GGGTTGCAGCGAAGCAGGTTAAAA
* * * * * *
37037109 ATAGCATATCTTGCCTTCTTGCACCGACAGCGAAGTAGATCGAAGACACAAACCTTGCCTCCTTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
* *
37037174 GGTTGTAACGGAA-CAGGTTAAAA
66 GGTTGCAGC-GAAGCAGGTTAAAA
*
37037197 ATAGCAGACCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
37037262 GGTTGCAGCGAAGCAGGTTAAAA
66 GGTTGCAGCGAAGCAGGTTAAAA
* * * *
37037285 ATAGCAGATCTTGCCTTCCTGCACCAACAGCAAAGCAGATCGATGACCCCAGCC
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCC
37037339 CTATCTCCCT
Statistics
Matches: 271, Mismatches: 40, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
86 2 0.01
87 69 0.25
88 196 0.72
89 4 0.01
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (88 bp):
ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
GGTTGCAGCGAAGCAGGTTAAAA
Found at i:37037435 original size:44 final size:43
Alignment explanation
Indices: 37037338--37037436 Score: 137
Period size: 44 Copynumber: 2.3 Consensus size: 43
37037328 TGACCCCAGC
37037338 CCTATCTCCCTGGACAGCAGTGGATAGGTTGAAGATTATAAGT
1 CCTATCTCCCTGGACAGCAGTGGATAGGTTGAAGATTATAAGT
* * * *
37037381 CTTATATCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-T
1 CCTATCTCCCTGGACAGCAGTGG-ATAGGTTGAAGATTAT-AAGT
37037425 CCTATCTCCCTG
1 CCTATCTCCCTG
37037437 AGCAACAATG
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
43 20 0.42
44 26 0.54
45 2 0.04
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.30
Consensus pattern (43 bp):
CCTATCTCCCTGGACAGCAGTGGATAGGTTGAAGATTATAAGT
Found at i:37038136 original size:44 final size:43
Alignment explanation
Indices: 37037823--37038329 Score: 207
Period size: 44 Copynumber: 11.7 Consensus size: 43
37037813 AAGACGGCGA
** *
37037823 ATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCCAATA
1 ATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAATCAA-G
* * ** *
37037867 ATCTTATCTCCCTAAAGTCGTAGTGGAGTGGATTAAAATCACAA
1 ATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAATCA-AG
* ** * *** *
37037911 ATCTTATCTCTCTGAAGTTACAG-AGAGCAGA-TCGCATCTAG
1 ATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAATCAAG
* * * * * *
37037952 -TTTTATCTCCCTGAAGTTGCAGTAGAGTAGACTAAGTAAGCAAG
1 ATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAA--AATCAAG
* * * *
37037996 -CCTTATC-CTCCTGAAGTTGTAGT-GAGGCAGACTGAAGATGGCGA-
1 ATCTTATCTC-CCTGAAGTTGTAGTGGA-GCAGA-TTAAAAT--CAAG
* ** *
37038040 ATCTTATCTCCCT-ACAGTTGTAGTGGAGCAAATTAAAGCCAATA
1 ATCTTATCTCCCTGA-AGTTGTAGTGGAGCAGATTAAAATCAA-G
* **
37038084 ATCCTATCTCCCTGAAGTTGTAGTGGAGTGGATTAAAATCACAG
1 ATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAATCA-AG
* ** * * *** *
37038128 ATCTTATCTCTCTGATCTTGCAG-AGAGCAGA-TCGCATC-GG
1 ATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAATCAAG
* * ** *
37038168 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAA--AGTG
1 ATCTTATCTCCCTGAAGTTGTAGTGGAGCAGA-TTAA-AATCA-AG
* *
37038212 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAAATCAAG
1 A-TCTTATCTCCCTGAAGTTGTAGTGGAGCAGA-T-TA-AAATCAAG
* * * * * *
37038259 -TCTTATCCCCCTGAAATTGCAGTGGGGCAGACTAAATAAACAA-
1 ATCTTATCTCCCTGAAGTTGTAGTGGAGCAGA-TTAA-AATCAAG
* *
37038302 ATCTCATCTCCCTAAAGTTGTAGTGGAG
1 ATCTTATCTCCCTGAAGTTGTAGTGGAG
37038330 TGGATTAGAA
Statistics
Matches: 345, Mismatches: 87, Indels: 62
0.70 0.18 0.13
Matches are distributed among these distances:
40 39 0.11
41 15 0.04
42 11 0.03
43 15 0.04
44 165 0.48
45 91 0.26
46 6 0.02
47 2 0.01
48 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (43 bp):
ATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAATCAAG
Found at i:37038184 original size:217 final size:217
Alignment explanation
Indices: 37037809--37038341 Score: 646
Period size: 217 Copynumber: 2.5 Consensus size: 217
37037799 AATTTAAAAT
* *
37037809 ACTGAAGACGGCGAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCCAATAATCTTAT
1 ACTGAAGACGGCGAATCTTATCTCCCTGAAGTTGTAGTGGAGCAAATTAAAGCCAATAATCCTAT
*
37037874 CTCCCTAAAGTCGTAGTGGAGTGGATTAAAATCACAAATCTTATCTCTCTGAAGTTACAGAGAGC
66 CTCCCTAAAGTCGTAGTGGAGTGGATTAAAATCACAAATCTTATCTCTCTGAACTTACAGAGAGC
* * *
37037939 AGATCGCATCTAGTTTTATCTCCCTGAAGTTGCAGTAGAGTAGACTAAGTAAGCAAGCCTTATCC
131 AGATCGCATCGAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTAAGTAAGCAAGCCTTATCC
37038004 TCCTGAAGTTGTAGTGAGGCAG
196 TCCTGAAGTTGTAGTGAGGCAG
*
37038026 ACTGAAGATGGCGAATCTTATCTCCCT-ACAGTTGTAGTGGAGCAAATTAAAGCCAATAATCCTA
1 ACTGAAGACGGCGAATCTTATCTCCCTGA-AGTTGTAGTGGAGCAAATTAAAGCCAATAATCCTA
* * * * *
37038090 TCTCCCTGAAGTTGTAGTGGAGTGGATTAAAATCACAGATCTTATCTCTCTGATCTTGCAGAGAG
65 TCTCCCTAAAGTCGTAGTGGAGTGGATTAAAATCACAAATCTTATCTCTCTGAACTTACAGAGAG
* * * * ** *
37038155 CAGATCGCATCGGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAAGTGAGTCTTAT
130 CAGATCGCATCGAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGA-CTAAGTAAGCAAGCCTTAT
*
37038220 -CTCCCTGAAGTTGCAGTG-GAGCAG
194 CCT-CCTGAAGTTGTAGTGAG-GCAG
* *** * * * * * * ** *
37038244 ACTCAAGAAATC-AAGTCTTATCCCCCTGAAATTGCAGTGGGGCAGACTAAA-TAAACAAAT-CT
1 ACTGAAGACGGCGAA-TCTTATCTCCCTGAAGTTGTAGTGGAGCAAATTAAAGCCAA-TAATCCT
* *
37038306 CATCTCCCTAAAGTTGTAGTGGAGTGGATTAGAATC
64 -ATCTCCCTAAAGTCGTAGTGGAGTGGATTAAAATC
37038342 TCTCTGAAAT
Statistics
Matches: 273, Mismatches: 35, Indels: 15
0.85 0.11 0.05
Matches are distributed among these distances:
216 1 0.00
217 167 0.61
218 104 0.38
219 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.27
Consensus pattern (217 bp):
ACTGAAGACGGCGAATCTTATCTCCCTGAAGTTGTAGTGGAGCAAATTAAAGCCAATAATCCTAT
CTCCCTAAAGTCGTAGTGGAGTGGATTAAAATCACAAATCTTATCTCTCTGAACTTACAGAGAGC
AGATCGCATCGAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTAAGTAAGCAAGCCTTATCC
TCCTGAAGTTGTAGTGAGGCAG
Found at i:37038219 original size:45 final size:45
Alignment explanation
Indices: 37038168--37038329 Score: 193
Period size: 45 Copynumber: 3.6 Consensus size: 45
37038158 ATCGCATCGG
*
37038168 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAAGT-GA
1 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAA-TCAA
*
37038213 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAAATCAA
1 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAATCAA
* * * ** *
37038258 GTCTTATCCCCCTGAAATTGCAGTGGGGCAGACTAAATAAA-CAA
1 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAATCAA
* * * *
37038302 ATCTCATCTCCCTAAAGTTGTAGTGGAG
1 GTCTTATCTCCCTGAAGTTGCAGTGGAG
37038330 TGGATTAGAA
Statistics
Matches: 102, Mismatches: 14, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
44 25 0.25
45 77 0.75
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (45 bp):
GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCCAAGAAATCAA
Found at i:37038874 original size:19 final size:19
Alignment explanation
Indices: 37038850--37038941 Score: 157
Period size: 19 Copynumber: 4.8 Consensus size: 19
37038840 AATCTTCAAG
37038850 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
37038869 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
37038888 GATATGCAACCTTAGATAT
1 GATATGCAATCTTAGATAT
*
37038907 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
37038926 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
37038942 AGATATGATT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 67 1.00
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:37038894 original size:38 final size:38
Alignment explanation
Indices: 37038850--37038964 Score: 176
Period size: 38 Copynumber: 2.9 Consensus size: 38
37038840 AATCTTCAAG
37038850 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
*
37038888 GATATGCAACCTTAGATATGATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
*
37038926 GATATGCAATCTTAGAAGATATGATTTTGTAATCTTAGA
1 GATATGCAATCTT---AGATATGA-TATGTAATCTTAGA
37038965 AATTTAATTT
Statistics
Matches: 70, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
38 49 0.70
41 8 0.11
42 13 0.19
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.38
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGTAATCTTAGATAT
Found at i:37039196 original size:23 final size:23
Alignment explanation
Indices: 37039152--37039196 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
37039142 TCTTATTTTG
* *
37039152 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTCATTTA
**
37039175 TTGATTTGTATATTGTTCATTT
1 TTGATTTGTATATAATTCATTT
37039197 CAAATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.02, G:0.13, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTCATTTA
Found at i:37051320 original size:9 final size:9
Alignment explanation
Indices: 37051306--37051336 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
37051296 GTTAAACGAA
37051306 TCGAGTTAT
1 TCGAGTTAT
*
37051315 TCGAGTTAA
1 TCGAGTTAT
37051324 TCGAGTTAT
1 TCGAGTTAT
37051333 TCGA
1 TCGA
37051337 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:37056499 original size:26 final size:26
Alignment explanation
Indices: 37056469--37056528 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
37056459 GTAGCTCCGG
37056469 AGAGCCATTAATCGGGAAGCTCACAA
1 AGAGCCATTAATCGGGAAGCTCACAA
* * * *
37056495 AGAGCCTTTAATCTGGAAGCTTACGA
1 AGAGCCATTAATCGGGAAGCTCACAA
37056521 AGAGCCAT
1 AGAGCCAT
37056529 ATAACAGGAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (26 bp):
AGAGCCATTAATCGGGAAGCTCACAA
Found at i:37058061 original size:22 final size:22
Alignment explanation
Indices: 37058033--37058075 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
37058023 TATAATAACG
**
37058033 AAAATTTATTATTTAAAATAAT
1 AAAATTTATTAAATAAAATAAT
*
37058055 AAAATTTTTTAAATAAAATAA
1 AAAATTTATTAAATAAAATAA
37058076 ATCAAAAGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
AAAATTTATTAAATAAAATAAT
Found at i:37063505 original size:21 final size:22
Alignment explanation
Indices: 37063462--37063506 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
37063452 GGCCCGGCCT
37063462 ATTTTTTTAATAAACACAAAAA
1 ATTTTTTTAATAAACACAAAAA
*
37063484 ATTTATTTTAA-AAATA-AAAAA
1 ATTT-TTTTAATAAACACAAAAA
37063505 AT
1 AT
37063507 AAAAAAAGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 7 0.33
22 8 0.38
23 6 0.29
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (22 bp):
ATTTTTTTAATAAACACAAAAA
Found at i:37064216 original size:20 final size:20
Alignment explanation
Indices: 37064172--37064222 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 20
37064162 TATATAATTT
*
37064172 TTAAAAAAATTATATAATACA
1 TTAAAAAAA-TATATAAAACA
37064193 -TAAAAAAATACTA-AAAACA
1 TTAAAAAAATA-TATAAAACA
37064212 TTAAAATAAAT
1 TTAAAA-AAAT
37064223 GTTTCCTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
19 7 0.27
20 15 0.58
21 4 0.15
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (20 bp):
TTAAAAAAATATATAAAACA
Found at i:37066405 original size:31 final size:31
Alignment explanation
Indices: 37066367--37066430 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
37066357 CATACTTACA
37066367 AAATTTAATAACTCCACTACCACAGAAA-GAG
1 AAATTTAATAACTCCACTACCACA-AAATGAG
37066398 AAATTTAATAACTCCACTACCACAAAATGAG
1 AAATTTAATAACTCCACTACCACAAAATGAG
37066429 AA
1 AA
37066431 TATAGATCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 3 0.09
31 29 0.91
ACGTcount: A:0.50, C:0.22, G:0.08, T:0.20
Consensus pattern (31 bp):
AAATTTAATAACTCCACTACCACAAAATGAG
Found at i:37071133 original size:13 final size:13
Alignment explanation
Indices: 37071091--37071138 Score: 60
Period size: 13 Copynumber: 3.7 Consensus size: 13
37071081 ACACTCAAAT
37071091 TTTTCAAAAACAC
1 TTTTCAAAAACAC
* *
37071104 TTTTCCATAACAC
1 TTTTCAAAAACAC
* *
37071117 TTTTCAAAAATAT
1 TTTTCAAAAACAC
37071130 TTTTCAAAA
1 TTTTCAAAA
37071139 GTAATGAAGA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.42, C:0.19, G:0.00, T:0.40
Consensus pattern (13 bp):
TTTTCAAAAACAC
Found at i:37080175 original size:24 final size:24
Alignment explanation
Indices: 37080133--37080186 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
37080123 AATCAAAGTC
** **
37080133 AAATATATTATGTTAATAAATGTT
1 AAATATATTATACTAATAAATACT
*
37080157 AAATATATTATACTCATAAATACT
1 AAATATATTATACTAATAAATACT
37080181 AAATAT
1 AAATAT
37080187 TCTAGAAAGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.41
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:37080467 original size:20 final size:20
Alignment explanation
Indices: 37080426--37080467 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
37080416 TCATAACACA
* *
37080426 TCTCTCATTCTATATTCTTT
1 TCTCTCATTCCATATTCGTT
37080446 TCTCTCATTCCAT-TTCCGTT
1 TCTCTCATTCCATATT-CGTT
37080466 TC
1 TC
37080468 CTTTTCCCCC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.12, C:0.31, G:0.02, T:0.55
Consensus pattern (20 bp):
TCTCTCATTCCATATTCGTT
Found at i:37083277 original size:26 final size:25
Alignment explanation
Indices: 37083248--37083305 Score: 80
Period size: 26 Copynumber: 2.3 Consensus size: 25
37083238 TTTATCGGGA
* *
37083248 GTAAAATCGTCAAATTTTTACTAAGG
1 GTAAAATCATCAAAATTTTACT-AGG
*
37083274 GTAAAATCATCAAAATTTTACTGGG
1 GTAAAATCATCAAAATTTTACTAGG
37083299 GTAAAAT
1 GTAAAAT
37083306 TAGGATGAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 9 0.31
26 20 0.69
ACGTcount: A:0.41, C:0.10, G:0.16, T:0.33
Consensus pattern (25 bp):
GTAAAATCATCAAAATTTTACTAGG
Found at i:37097434 original size:15 final size:15
Alignment explanation
Indices: 37097414--37097444 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
37097404 TATAATACAC
37097414 TTATTACTGGAGTGA
1 TTATTACTGGAGTGA
*
37097429 TTATTAGTGGAGTGA
1 TTATTACTGGAGTGA
37097444 T
1 T
37097445 AATAATTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.03, G:0.29, T:0.42
Consensus pattern (15 bp):
TTATTACTGGAGTGA
Found at i:37098064 original size:93 final size:93
Alignment explanation
Indices: 37097944--37098118 Score: 332
Period size: 93 Copynumber: 1.9 Consensus size: 93
37097934 ATAGATTTTG
*
37097944 AACTGTTTATGGATTTATTCACTTATGATGTTCAAAGTGTGGCATACCTAAATTCTGAGTGGATG
1 AACTGTTTATGGATTTATTCACTTATGACGTTCAAAGTGTGGCATACCTAAATTCTGAGTGGATG
37098009 ACAGACTATGTATGCATACCAAAATTCA
66 ACAGACTATGTATGCATACCAAAATTCA
*
37098037 AACTGTTTATGGATTTATTCACTTATGACGTTCAAAGTGTGGCATATCTAAATTCTGAGTGGATG
1 AACTGTTTATGGATTTATTCACTTATGACGTTCAAAGTGTGGCATACCTAAATTCTGAGTGGATG
37098102 ACAGACTATGTATGCAT
66 ACAGACTATGTATGCAT
37098119 GACCTGTATA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
93 80 1.00
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.35
Consensus pattern (93 bp):
AACTGTTTATGGATTTATTCACTTATGACGTTCAAAGTGTGGCATACCTAAATTCTGAGTGGATG
ACAGACTATGTATGCATACCAAAATTCA
Found at i:37103633 original size:21 final size:21
Alignment explanation
Indices: 37103608--37103654 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
37103598 CATCAACAAT
*
37103608 TGATGAGACTTTGGATACTCA
1 TGATGAGACATTGGATACTCA
*
37103629 TGATGAGACATTGGGTACTCA
1 TGATGAGACATTGGATACTCA
37103650 TGATG
1 TGATG
37103655 GGGAAAATGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.32
Consensus pattern (21 bp):
TGATGAGACATTGGATACTCA
Found at i:37108710 original size:27 final size:28
Alignment explanation
Indices: 37108671--37108723 Score: 65
Period size: 27 Copynumber: 1.9 Consensus size: 28
37108661 ATTCACTTTG
*
37108671 TGTTTATAAAA-TTCTCTTTGAGTTTTTT
1 TGTTTATAAAATTTCTC-ATGAGTTTTTT
*
37108699 TGTTTA-AGAATTTCTCATGAGTTTT
1 TGTTTATAAAATTTCTCATGAGTTTT
37108724 CTTTTAAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
27 11 0.50
28 11 0.50
ACGTcount: A:0.23, C:0.08, G:0.13, T:0.57
Consensus pattern (28 bp):
TGTTTATAAAATTTCTCATGAGTTTTTT
Found at i:37110285 original size:20 final size:20
Alignment explanation
Indices: 37110257--37110294 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
37110247 TAGGATTTAA
*
37110257 GGTTGAAGGTTCAAGTTTGG
1 GGTTCAAGGTTCAAGTTTGG
37110277 GGTTCAAGGTTCAAGTTT
1 GGTTCAAGGTTCAAGTTT
37110295 AGTGTTTAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.08, G:0.34, T:0.37
Consensus pattern (20 bp):
GGTTCAAGGTTCAAGTTTGG
Found at i:37110305 original size:20 final size:20
Alignment explanation
Indices: 37110252--37110296 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
37110242 GGGTTTAGGA
* *
37110252 TTTAAGGTTGAAGGTTCAAG
1 TTTAGGGTTCAAGGTTCAAG
*
37110272 TTTGGGGTTCAAGGTTCAAG
1 TTTAGGGTTCAAGGTTCAAG
37110292 TTTAG
1 TTTAG
37110297 TGTTTAAGGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.07, G:0.31, T:0.38
Consensus pattern (20 bp):
TTTAGGGTTCAAGGTTCAAG
Found at i:37126298 original size:44 final size:43
Alignment explanation
Indices: 37126167--37126664 Score: 217
Period size: 44 Copynumber: 11.4 Consensus size: 43
37126157 CCACTAATCC
*
37126167 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTAA-CAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAG-AAGCAGATCT
* * * ** ** * * * *
37126211 TATCTCACTAAAGTGGCAGCAGAGTGGA-T-CGCATCAGGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAGATCT
* *
37126252 TATCTCCCTGAAGTTGCAGCGGAGCAGACTAAGTAAGCAGGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAGATCT
* * * * *
37126296 TATCCCCCTGAAGTTGCAGTGGGGCAGATCGAAGATGGCAAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-CTAAGA-AGCAGATCT
* * * *
37126341 TATCTCCCTGAGGTTGCAGTGGAGCAGA-T-TGAAGCCGATAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-GATCT
* * * * * *
37126385 TATCTCCCTGAAGTTGCAG-CGAACGGATTAAAACATCAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGA-AGCAGATCT
* * * * ** * *
37126428 TATCCCCCTGAAGTTGCAGTGGGGTAGATCGAAGGTGGAAAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-CTAA-GAAGCAGATCT
* * * * * *
37126473 TATCTTCATGAGGTTGCAGTGGAGCAGA-T-TGAAGCCGATAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-GATCT
* * * * * * *
37126517 TATCTCCCTGAAGTTGTAGCGGAACGGATTAAAACATCAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGA-AGCAGATCT
* * * * * *
37126561 TATCTCTCTGAAGTTGTACTAGAGCAGA-T-CGCAACCAG-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAGATCT
* * * * *
37126602 CATCTCCCTGAAGTTGCAGTGGAGCAGACACAAGAAACAAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGAC-TAAGAAGCAGATCT
37126646 TATCTCCCTGAAGTTGCAG
1 TATCTCCCTGAAGTTGCAG
37126665 CAGAGCGGAT
Statistics
Matches: 328, Mismatches: 100, Indels: 52
0.68 0.21 0.11
Matches are distributed among these distances:
40 1 0.00
41 58 0.18
42 8 0.02
43 36 0.11
44 153 0.47
45 68 0.21
46 3 0.01
47 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (43 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAGATCT
Found at i:37126326 original size:85 final size:87
Alignment explanation
Indices: 37126162--37126368 Score: 213
Period size: 85 Copynumber: 2.4 Consensus size: 87
37126152 TGAAGCCACT
* * *
37126162 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTAACAGATCTTATCTCACTAAAGTGG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGTAACAGATCTTATCCCACTAAAGTGG
**
37126227 CAGCAGAGTGGATCG-CAT-CA
66 CAGCAGAGCAGATCGACATGCA
** * * * * *
37126247 GGTCTTATCTCCCTGAAGTTGCAGCGGAGCAGACT-AAGTAAGCAGGTCTTATCCCCCTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGTAA-CAGATCTTATCCCACTAAAGTG
** * *
37126311 GCAGTGGGGCAGATCGAAGATGGCA
65 GCAGCAGAGCAGATCG-ACAT-GCA
*
37126336 AATCTTATCTCCCTGAGGTTGCAGTGGAGCAGA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
37126369 TTGAAGCCGA
Statistics
Matches: 97, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
84 6 0.06
85 58 0.60
87 2 0.02
89 31 0.32
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.24
Consensus pattern (87 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGTAACAGATCTTATCCCACTAAAGTGG
CAGCAGAGCAGATCGACATGCA
Found at i:37126446 original size:132 final size:133
Alignment explanation
Indices: 37126252--37126679 Score: 503
Period size: 132 Copynumber: 3.3 Consensus size: 133
37126242 CATCAGGTCT
* * * * * *
37126252 TATCTCCCTGAAGTTGCAGCGGAGCAGACTAAGTA-AGCAGGTCTTATCCCCCTGAAGTTGCAGT
1 TATCTCCCTGAAGTTGCAGCGGAACGGATTAA-AACATCAGATCTTATCCCCCTGAAGTTGCAGT
37126316 GGGGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCCGATA
65 GGGGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCCGATA
37126381 ATCC
130 ATCC
37126385 TATCTCCCTGAAGTTGCAGC-GAACGGATTAAAACATCAGATCTTATCCCCCTGAAGTTGCAGTG
1 TATCTCCCTGAAGTTGCAGCGGAACGGATTAAAACATCAGATCTTATCCCCCTGAAGTTGCAGTG
* * * * *
37126449 GGGTAGATCGAAGGTGGAAAATCTTATCTTCATGAGGTTGCAGTGGAGCAGATTGAAGCCGATAA
66 GGGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCCGATAA
37126514 TCC
131 TCC
* * * * * *
37126517 TATCTCCCTGAAGTTGTAGCGGAACGGATTAAAACATCAGATCTTATCTCTCTGAAGTTGTACTA
1 TATCTCCCTGAAGTTGCAGCGGAACGGATTAAAACATCAGATCTTATCCCCCTGAAGTTGCAGTG
* * * * * * *** *
37126582 GAGCAGATCGCA-A---CCAGTCTCATCTCCCTGAAGTTGCAGTGGAGCAGACACAAGAAAC-A-
66 GGGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAG--CCGAT
37126641 AATCC
129 AATCC
* * *
37126646 TATCTCCCTGAAGTTGCAGCAGAGCGGATCAAAA
1 TATCTCCCTGAAGTTGCAGCGGAACGGATTAAAA
37126680 TGATGGGTCT
Statistics
Matches: 255, Mismatches: 36, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
129 66 0.26
130 1 0.00
131 2 0.01
132 118 0.46
133 68 0.27
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (133 bp):
TATCTCCCTGAAGTTGCAGCGGAACGGATTAAAACATCAGATCTTATCCCCCTGAAGTTGCAGTG
GGGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCCGATAA
TCC
Found at i:37126674 original size:129 final size:128
Alignment explanation
Indices: 37126335--37126719 Score: 355
Period size: 129 Copynumber: 3.0 Consensus size: 128
37126325 CGAAGATGGC
* * * *** *
37126335 AAATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTT
1 AAATCTCATCTCCATGAAGTTGCAGTGGAGCAGACACAAGACGATAATCCTATCTCCCTGAAGTT
* * * * *
37126400 GCAGCGAACGGATTAAAACATCAGATCTTATCCCCCTGAAGTTGCAGTGGGGTAGATCGAAGGTG
66 GCAGCGAACGGATTAAAACATCAGATCTTATCTCTCTGAAGTTGTAGTAGAGTAGATCGAA----
37126465 GA
127 GA
* * * *** *
37126467 AAATCTTATCTTCATGAGGTTGCAGTGGAGCAGATTGAAGCCGATAATCCTATCTCCCTGAAGTT
1 AAATCTCATCTCCATGAAGTTGCAGTGGAGCAGACACAAGACGATAATCCTATCTCCCTGAAGTT
* * * *
37126532 GTAGCGGAACGGATTAAAACATCAGATCTTATCTCTCTGAAGTTGTACTAGAGCAGATCGCAA-C
66 GCAGC-GAACGGATTAAAACATCAGATCTTATCTCTCTGAAGTTGTAGTAGAGTAGATCG-AAGA
* * *
37126596 CAGTCTCATCTCCCTGAAGTTGCAGTGGAGCAGACACAAGAAAC-A-AATCCTATCTCCCTGAAG
1 AAATCTCATCTCCATGAAGTTGCAGTGGAGCAGACACAAG--ACGATAATCCTATCTCCCTGAAG
* * * * * * *
37126659 TTGCAGCAGAGCGGATCAAAATGAT-GGGTCTCATCTCTCTGAAGTTATAGTAGAGTAGATC
64 TTGCAGC-GAACGGATTAAAA-CATCAGATCTTATCTCTCTGAAGTTGTAGTAGAGTAGATC
37126720 ACATCAGTCT
Statistics
Matches: 216, Mismatches: 32, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
129 96 0.44
130 3 0.01
131 1 0.00
132 67 0.31
133 47 0.22
134 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (128 bp):
AAATCTCATCTCCATGAAGTTGCAGTGGAGCAGACACAAGACGATAATCCTATCTCCCTGAAGTT
GCAGCGAACGGATTAAAACATCAGATCTTATCTCTCTGAAGTTGTAGTAGAGTAGATCGAAGA
Found at i:37129912 original size:28 final size:29
Alignment explanation
Indices: 37129854--37129913 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
37129844 TGCATATATT
* *
37129854 TATTATATATAATAAAACCCACACATATA
1 TATTATATATAACAAAACCCACACAAATA
* *
37129883 TATTATATATAGCAAAA-CCACGCAAATA
1 TATTATATATAACAAAACCCACACAAATA
37129911 TAT
1 TAT
37129914 GCAGTATGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 12 0.44
29 15 0.56
ACGTcount: A:0.50, C:0.17, G:0.03, T:0.30
Consensus pattern (29 bp):
TATTATATATAACAAAACCCACACAAATA
Found at i:37131614 original size:13 final size:13
Alignment explanation
Indices: 37131581--37131629 Score: 73
Period size: 13 Copynumber: 3.8 Consensus size: 13
37131571 TCTCTCGAGC
37131581 CCACAATCTAATA
1 CCACAATCTAATA
37131594 CC-CAATCTAATA
1 CCACAATCTAATA
37131606 CCACAATCTAATA
1 CCACAATCTAATA
*
37131619 CACATAATCTA
1 C-CACAATCTA
37131630 TCTCTTCTCT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
12 12 0.36
13 13 0.39
14 8 0.24
ACGTcount: A:0.45, C:0.31, G:0.00, T:0.24
Consensus pattern (13 bp):
CCACAATCTAATA
Found at i:37136206 original size:5 final size:5
Alignment explanation
Indices: 37136196--37136220 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
37136186 TTCTATACTT
37136196 ATTTA ATTTA ATTTA ATTTA ATTTA
1 ATTTA ATTTA ATTTA ATTTA ATTTA
37136221 GGTCCGTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATTTA
Found at i:37138244 original size:19 final size:20
Alignment explanation
Indices: 37138220--37138262 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
37138210 GAGTTGCCTT
37138220 AAAAGAGT-AAAAAAATCCA
1 AAAAGAGTAAAAAAAATCCA
37138239 AAAAGAGTAAAAAAAATCCA
1 AAAAGAGTAAAAAAAATCCA
37138259 AAAA
1 AAAA
37138263 TCTTGGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.72, C:0.09, G:0.09, T:0.09
Consensus pattern (20 bp):
AAAAGAGTAAAAAAAATCCA
Found at i:37152503 original size:35 final size:33
Alignment explanation
Indices: 37152453--37152521 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 33
37152443 TCTTAACATA
37152453 GCCAGTATTAACAGATGATTATTAACATAGTCTG
1 GCCAGTATTAACAGATGATTATTAACATAG-CTG
37152487 GCCATGTATTAACAGATGATTATTAACATAGCTG
1 GCCA-GTATTAACAGATGATTATTAACATAGCTG
37152521 G
1 G
37152522 TGTAACGAGT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
34 8 0.24
35 26 0.76
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (33 bp):
GCCAGTATTAACAGATGATTATTAACATAGCTG
Found at i:37158563 original size:24 final size:24
Alignment explanation
Indices: 37158536--37158581 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
37158526 TGCATTTGCA
*
37158536 TTTGCAAT-TGGTCTTACATTTCTC
1 TTTG-AATATGGTCTAACATTTCTC
*
37158560 TTTGAATATGTTCTAACATTTC
1 TTTGAATATGGTCTAACATTTC
37158582 CAATCTTTGG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 3 0.16
24 16 0.84
ACGTcount: A:0.22, C:0.17, G:0.11, T:0.50
Consensus pattern (24 bp):
TTTGAATATGGTCTAACATTTCTC
Found at i:37161403 original size:23 final size:22
Alignment explanation
Indices: 37161373--37161418 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
37161363 TGAATTAAAT
37161373 TTCTAAGATTACAAAATCATATC
1 TTCTAAGATTAC-AAATCATATC
* *
37161396 TTCTAAGATTGCATATCATATC
1 TTCTAAGATTACAAATCATATC
37161418 T
1 T
37161419 AAGATTGCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 10 0.48
23 11 0.52
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.39
Consensus pattern (22 bp):
TTCTAAGATTACAAATCATATC
Found at i:37172982 original size:93 final size:93
Alignment explanation
Indices: 37172818--37173003 Score: 300
Period size: 93 Copynumber: 2.0 Consensus size: 93
37172808 AAAGGCAATG
* * *
37172818 TTTGTTCATTGATCGCTGTAGAGGTGCTACTGCTTTGATCATTGTGTTGTTGTATACTGGGGGAC
1 TTTGTTCATTAATCGCTGCAGAGGTGCTACTGCTTTGATCATTGTGTTGTTGTATACTGGGAGAC
*
37172883 ATTCGACCAATATTTCTCCAAGTACCAT
66 ACTCGACCAATATTTCTCCAAGTACCAT
* * *
37172911 TTTGTTCGTTAATCGTTGCAGAGGTGCTACTGCTTTGATCATTGTGTTGTTGTATCCTGGGAGAC
1 TTTGTTCATTAATCGCTGCAGAGGTGCTACTGCTTTGATCATTGTGTTGTTGTATACTGGGAGAC
*
37172976 ACTCGACCAATGTTTCTCCAAGTACCAT
66 ACTCGACCAATATTTCTCCAAGTACCAT
37173004 AAGAGTTGTC
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 85 1.00
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.38
Consensus pattern (93 bp):
TTTGTTCATTAATCGCTGCAGAGGTGCTACTGCTTTGATCATTGTGTTGTTGTATACTGGGAGAC
ACTCGACCAATATTTCTCCAAGTACCAT
Found at i:37173693 original size:88 final size:86
Alignment explanation
Indices: 37173521--37173873 Score: 311
Period size: 87 Copynumber: 4.0 Consensus size: 86
37173511 TCTTGCCACT
* * * ** * *
37173521 GTTCAATGGATTTTATTCCATTTTTATTTTATTTCC-AAATGGAAAATTAAAGTT-AAATAAAAT
1 GTTCAACGGA-TTTATT-CAATTTGATTTTATTTCCAAAAACGAATATTAAAATTAAAATAAAAT
* ** *
37173584 -TCATTTCGGGATTTAGTCCCGCC
64 AT-GTTTCAAGATTTATTCCCGCC
* * *
37173607 GTTCAACGAATTTTATTCGAATTTCGATTTTATTT-CTAAAACGATTATTAAAATTAAAATAAAA
1 GTTCAACGGA-TTTATTC-AATTT-GATTTTATTTCCAAAAACGAATATTAAAATTAAAATAAAA
37173671 TATGTTTCAAGATTTATTCCCGCC
63 TATGTTTCAAGATTTATTCCCGCC
* * *
37173695 GTTCAACGGAGTTTATTCCAAATTTGTTTTTATTTCCAAAAACGAGTATTAAAATTAAAATAAAT
1 GTTCAACGGA-TTTATT-C-AATTTGATTTTATTTCCAAAAACGAATATTAAAATTAAAATAAAA
* *
37173760 TATGTTTCGAGATTTATTCTCGCC
63 TATGTTTCAAGATTTATTCCCGCC
* * * * * * *
37173784 ATTTAACGGATTTATTACATTTTTATTTTGTTTCCAAAAACGAGAAATAAAAATT-AAATAAAAT
1 GTTCAACGGATTTATT-CAATTTGATTTTATTTCCAAAAACGA-ATATTAAAATTAAAATAAAAT
* * *
37173848 CTATTTCAAGATTTATTCTCGCC
64 ATGTTTCAAGATTTATTCCCGCC
37173871 GTT
1 GTT
37173874 TGACAAGATT
Statistics
Matches: 222, Mismatches: 37, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
85 1 0.00
86 20 0.09
87 73 0.33
88 65 0.29
89 63 0.28
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.41
Consensus pattern (86 bp):
GTTCAACGGATTTATTCAATTTGATTTTATTTCCAAAAACGAATATTAAAATTAAAATAAAATAT
GTTTCAAGATTTATTCCCGCC
Found at i:37173766 original size:89 final size:87
Alignment explanation
Indices: 37173593--37173873 Score: 316
Period size: 89 Copynumber: 3.2 Consensus size: 87
37173583 TTCATTTCGG
* * * * * *
37173593 GATTTAGTCCCGCCGTTCAACGAATTTTATTCGAATTTCGATTTTATTT-CTAAAACGATTATTA
1 GATTTATTCCCGCCGTTCAACGGA-TTTATTCAAATTT-GTTTTTATTTCCAAAAACGAGTATTA
37173657 AAATTAAAATAAAATATGTTTCAA
64 AAATTAAAATAAAATATGTTTCAA
37173681 GATTTATTCCCGCCGTTCAACGGAGTTTATTCCAAATTTGTTTTTATTTCCAAAAACGAGTATTA
1 GATTTATTCCCGCCGTTCAACGGA-TTTATT-CAAATTTGTTTTTATTTCCAAAAACGAGTATTA
* *
37173746 AAATTAAAATAAATTATGTTTCGA
64 AAATTAAAATAAAATATGTTTCAA
* * * * * * * *
37173770 GATTTATTCTCGCCATTTAACGGATTTATT-ACATTTTTATTTTGTTTCCAAAAACGAGAAATAA
1 GATTTATTCCCGCCGTTCAACGGATTTATTCAAATTTGT-TTTTATTTCCAAAAACGAG-TATTA
* *
37173834 AAATT-AAATAAAATCTATTTCAA
64 AAATTAAAATAAAATATGTTTCAA
*
37173857 GATTTATTCTCGCCGTT
1 GATTTATTCCCGCCGTT
37173874 TGACAAGATT
Statistics
Matches: 167, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
86 6 0.04
87 48 0.29
88 51 0.31
89 62 0.37
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.40
Consensus pattern (87 bp):
GATTTATTCCCGCCGTTCAACGGATTTATTCAAATTTGTTTTTATTTCCAAAAACGAGTATTAAA
ATTAAAATAAAATATGTTTCAA
Found at i:37173992 original size:84 final size:84
Alignment explanation
Indices: 37173880--37174046 Score: 219
Period size: 84 Copynumber: 2.0 Consensus size: 84
37173870 CGTTTGACAA
* * * * *
37173880 GATTTTAGTTTGCTTCCAAAGTAGAATTAAATTAAATAATAT-TTGTTTCGGGATTTATTCTCGC
1 GATTTTAGTTTGCTTCCAAAGTAGAATTAAATAAAATAAAATCTT-TTTCGGGATTCATTCCCAC
37173944 AGTTTAACAAGATTTTATTT
65 AGTTTAACAAGATTTTATTT
* * * * *
37173964 GATTTTATTTTGTTTCTAAATTAGAATTAAATAAAATAAAATCTTTTTCGGGATTCATTCCCACC
1 GATTTTAGTTTGCTTCCAAAGTAGAATTAAATAAAATAAAATCTTTTTCGGGATTCATTCCCACA
*
37174029 GTTTTACAAGATTTTATT
66 GTTTAACAAGATTTTATT
37174047 CGATATTGTT
Statistics
Matches: 71, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
84 69 0.97
85 2 0.03
ACGTcount: A:0.32, C:0.11, G:0.12, T:0.46
Consensus pattern (84 bp):
GATTTTAGTTTGCTTCCAAAGTAGAATTAAATAAAATAAAATCTTTTTCGGGATTCATTCCCACA
GTTTAACAAGATTTTATTT
Found at i:37174038 original size:158 final size:162
Alignment explanation
Indices: 37173746--37174044 Score: 362
Period size: 158 Copynumber: 1.9 Consensus size: 162
37173736 ACGAGTATTA
*
37173746 AAATTAAAATAAATTATGTTTCGAGATTTATTCTCGCCATTTAACGGATTTATTACATTTTTATT
1 AAATTAAAATAAATTATGTTTCGAGATTTATTCTCGCCATTTAACAGATTTATTACATTTTTATT
* * * *
37173811 TTGTTTCCAAAAACGAGAAATAAAAATTAAATAAAATCTATTTCAAGATTTATTCTCGCCGTTTG
66 TTGTTTCCAAAAACGAGAAATAAAAATAAAATAAAATCTATTTCAAGATTCATTCCCACCGTTTG
37173876 ACAAGATTTTAGTTTGCTTCCAAAGTAGAATT
131 ACAAGATTTTAGTTTGCTTCCAAAGTAGAATT
* **
37173908 AAATT-AAATAATATT-TGTTTCGGGATTTATTCTCG-CAGTTTAACAAGATTTTATTTGA-TTT
1 AAATTAAAATAA-ATTATGTTTCGAGATTTATTCTCGCCA-TTTAAC-AGA-TTTATTACATTTT
* ** * * **
37173969 TATTTTGTTT-C-TAAATTAG-AAT-TAAATAAAATAAAATCTTTTTCGGGATTCATTCCCACCG
62 TATTTTGTTTCCAAAAACGAGAAATAAAAATAAAATAAAATCTATTTCAAGATTCATTCCCACCG
*
37174030 TTTTACAAGATTTTA
127 TTTGACAAGATTTTA
37174045 TTCGATATTG
Statistics
Matches: 117, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
158 45 0.38
159 3 0.03
160 7 0.06
161 32 0.27
162 23 0.20
163 7 0.06
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.42
Consensus pattern (162 bp):
AAATTAAAATAAATTATGTTTCGAGATTTATTCTCGCCATTTAACAGATTTATTACATTTTTATT
TTGTTTCCAAAAACGAGAAATAAAAATAAAATAAAATCTATTTCAAGATTCATTCCCACCGTTTG
ACAAGATTTTAGTTTGCTTCCAAAGTAGAATT
Found at i:37175212 original size:17 final size:18
Alignment explanation
Indices: 37175180--37175220 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
37175170 CCCCTTAGCC
*
37175180 AGATACAATCAGAATACT
1 AGATACAATCAGAATAAT
*
37175198 AGATATAAT-AGAATAAT
1 AGATACAATCAGAATAAT
37175215 AGATAC
1 AGATAC
37175221 CAAAATGCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.54, C:0.10, G:0.12, T:0.24
Consensus pattern (18 bp):
AGATACAATCAGAATAAT
Found at i:37175566 original size:50 final size:50
Alignment explanation
Indices: 37175472--37175567 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
37175462 CACATGCCCG
* * *
37175472 TGTGGCCCACATGGCCCAAAATAGCTAGTCTGTGTGGGCCCACACGTCCA
1 TGTGGCCCACATGGCCCAAAATAGCTAGACCGTGTGGGCACACACGTCCA
* * * *
37175522 TGTGGCCCACATTGCCCAATATGGCTTAGACCGTGT-GTCACACACG
1 TGTGGCCCACATGGCCCAAAATAGC-TAGACCGTGTGGGCACACACG
37175568 ACCTCATACA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
50 30 0.79
51 8 0.21
ACGTcount: A:0.22, C:0.31, G:0.25, T:0.22
Consensus pattern (50 bp):
TGTGGCCCACATGGCCCAAAATAGCTAGACCGTGTGGGCACACACGTCCA
Found at i:37179399 original size:27 final size:27
Alignment explanation
Indices: 37179361--37179415 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
37179351 GCACATTGCG
**
37179361 TGGAATGCATGGTTTACATGAAATGCA
1 TGGAATGCATGGGATACATGAAATGCA
* *
37179388 TGGATTGCATGGGATGCATGAAATGCA
1 TGGAATGCATGGGATACATGAAATGCA
37179415 T
1 T
37179416 TTTTTGCGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.31, C:0.11, G:0.29, T:0.29
Consensus pattern (27 bp):
TGGAATGCATGGGATACATGAAATGCA
Found at i:37179404 original size:18 final size:18
Alignment explanation
Indices: 37179355--37179407 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
37179345 CATGTAGCAC
*
37179355 ATTGCGTGGAATGCATGG
1 ATTGCATGGAATGCATGG
* * *
37179373 TTTACATGAAATGCATGG
1 ATTGCATGGAATGCATGG
*
37179391 ATTGCATGGGATGCATG
1 ATTGCATGGAATGCATG
37179408 AAATGCATTT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.26, C:0.11, G:0.32, T:0.30
Consensus pattern (18 bp):
ATTGCATGGAATGCATGG
Found at i:37187254 original size:18 final size:18
Alignment explanation
Indices: 37187215--37187254 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
37187205 TCATAAATAG
*
37187215 CAGTTTCACTACAGTTTC
1 CAGTTTCACTACAATTTC
* *
37187233 CAGTTTCTCTACAATTTT
1 CAGTTTCACTACAATTTC
37187251 CAGT
1 CAGT
37187255 ATACACTAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.23, C:0.25, G:0.10, T:0.42
Consensus pattern (18 bp):
CAGTTTCACTACAATTTC
Found at i:37191338 original size:28 final size:28
Alignment explanation
Indices: 37191275--37191343 Score: 93
Period size: 28 Copynumber: 2.5 Consensus size: 28
37191265 CTACAACATG
* *
37191275 CAGTAATAGTGTGGGCCTTAGCCCGATA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
*
37191303 CAGAAACAGTGTGGGCCTTAGCCCAATA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
* *
37191331 TAGTAACAATGTG
1 CAGTAACAGTGTG
37191344 ATAATGCAAC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.23
Consensus pattern (28 bp):
CAGTAACAGTGTGGGCCTTAGCCCAATA
Found at i:37191417 original size:21 final size:21
Alignment explanation
Indices: 37191367--37191418 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
37191357 CTCAATCCAG
* ** *
37191367 CCAACACAACGCTTTGTACCG
1 CCAACACACCGCTCCGTACCA
37191388 CCAACACACCGCTCCGTACCA
1 CCAACACACCGCTCCGTACCA
37191409 CCAACACACC
1 CCAACACACC
37191419 ATGTGGGGAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.31, C:0.48, G:0.10, T:0.12
Consensus pattern (21 bp):
CCAACACACCGCTCCGTACCA
Found at i:37191683 original size:27 final size:26
Alignment explanation
Indices: 37191660--37191778 Score: 107
Period size: 27 Copynumber: 4.4 Consensus size: 26
37191650 AGAGGTATAG
*
37191660 TAGTCATTTTACCCTATGGGGGTATT
1 TAGTCATTTTACCCTATAGGGGTATT
* *
37191686 TCGGTCATTTTACCCTTTAGGGGTATTT
1 T-AGTCATTTTACCCTATAGGGGTA-TT
37191714 TAGTCATTTTACCCT-TCAGGGGTATT
1 TAGTCATTTTACCCTAT-AGGGGTATT
* * * *
37191740 TTGATTATTTTA-CCTTTCGAGGGTATTT
1 TAG-TCATTTTACCCTATAG-GGGTA-TT
37191768 TAGTCATTTTA
1 TAGTCATTTTA
37191779 TTGACCCTAC
Statistics
Matches: 77, Mismatches: 9, Indels: 13
0.78 0.09 0.13
Matches are distributed among these distances:
26 10 0.13
27 60 0.78
28 7 0.09
ACGTcount: A:0.18, C:0.15, G:0.19, T:0.47
Consensus pattern (26 bp):
TAGTCATTTTACCCTATAGGGGTATT
Found at i:37191719 original size:54 final size:54
Alignment explanation
Indices: 37191660--37191778 Score: 161
Period size: 54 Copynumber: 2.2 Consensus size: 54
37191650 AGAGGTATAG
* *
37191660 TAGTCATTTTACCCTAT-GGGGGTATTTCGGTCATTTTACCCTTTAG-GGGTATTT
1 TAGTCATTTTACCCT-TCAGGGGTATTTCGATCATTTTA-CCTTTAGAGGGTATTT
* * *
37191714 TAGTCATTTTACCCTTCAGGGGTATTTTGATTATTTTACCTTTCGAGGGTATTT
1 TAGTCATTTTACCCTTCAGGGGTATTTCGATCATTTTACCTTTAGAGGGTATTT
37191768 TAGTCATTTTA
1 TAGTCATTTTA
37191779 TTGACCCTAC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
53 7 0.12
54 51 0.88
ACGTcount: A:0.18, C:0.15, G:0.19, T:0.47
Consensus pattern (54 bp):
TAGTCATTTTACCCTTCAGGGGTATTTCGATCATTTTACCTTTAGAGGGTATTT
Found at i:37192004 original size:17 final size:18
Alignment explanation
Indices: 37191982--37192017 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
37191972 TTCATTTGTG
37191982 TGGGCCCACA-AGCCCAT
1 TGGGCCCACACAGCCCAT
*
37191999 TGGGCCCATACAGCCCAT
1 TGGGCCCACACAGCCCAT
37192017 T
1 T
37192018 TCGACCCAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.22, C:0.39, G:0.22, T:0.17
Consensus pattern (18 bp):
TGGGCCCACACAGCCCAT
Found at i:37192910 original size:13 final size:13
Alignment explanation
Indices: 37192892--37192937 Score: 74
Period size: 13 Copynumber: 3.5 Consensus size: 13
37192882 CTACACAGCT
37192892 AGTATAACCGAAA
1 AGTATAACCGAAA
*
37192905 AGTATAATCGAAA
1 AGTATAACCGAAA
*
37192918 AGTATAACTGAAA
1 AGTATAACCGAAA
37192931 AGTATAA
1 AGTATAA
37192938 TCAGCACCAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.54, C:0.09, G:0.15, T:0.22
Consensus pattern (13 bp):
AGTATAACCGAAA
Found at i:37202230 original size:12 final size:11
Alignment explanation
Indices: 37202215--37202255 Score: 64
Period size: 11 Copynumber: 3.6 Consensus size: 11
37202205 TATTTTCTTC
37202215 TTTTTTTTCAAA
1 TTTTTTTTC-AA
37202227 TTTTTTTTCAA
1 TTTTTTTTCAA
*
37202238 TTTTTTTTGAA
1 TTTTTTTTCAA
37202249 TTTTTTT
1 TTTTTTT
37202256 GAAATACCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
11 19 0.68
12 9 0.32
ACGTcount: A:0.17, C:0.05, G:0.02, T:0.76
Consensus pattern (11 bp):
TTTTTTTTCAA
Found at i:37206888 original size:18 final size:18
Alignment explanation
Indices: 37206865--37206899 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
37206855 AATTTTTTCC
37206865 CTTTTACTTCTCCCAAAA
1 CTTTTACTTCTCCCAAAA
*
37206883 CTTTTACTTCTCGCAAA
1 CTTTTACTTCTCCCAAA
37206900 CCCTCCCCCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.31, G:0.03, T:0.40
Consensus pattern (18 bp):
CTTTTACTTCTCCCAAAA
Found at i:37208494 original size:33 final size:33
Alignment explanation
Indices: 37208363--37208493 Score: 167
Period size: 33 Copynumber: 4.0 Consensus size: 33
37208353 TCAACATATG
*
37208363 TGATTGGAACATCTATCAGG-GCACCTTCATCAA
1 TGATTGGAACATCTATC-GGTGCAGCTTCATCAA
*
37208396 TGATTGGAACATCTATCGGTCCAGCTTCATCAA
1 TGATTGGAACATCTATCGGTGCAGCTTCATCAA
* * *
37208429 TGATTGGAACATCTATCGGGGTAGCTTAATC-A
1 TGATTGGAACATCTATCGGTGCAGCTTCATCAA
* *
37208461 TCGAGTGGAACATCTATCGGTGCAACTTCATCA
1 T-GATTGGAACATCTATCGGTGCAGCTTCATCA
37208494 TTCTGTTTGA
Statistics
Matches: 84, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
32 4 0.05
33 80 0.95
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (33 bp):
TGATTGGAACATCTATCGGTGCAGCTTCATCAA
Found at i:37213874 original size:27 final size:27
Alignment explanation
Indices: 37213817--37214493 Score: 494
Period size: 27 Copynumber: 25.2 Consensus size: 27
37213807 GGTATAACAG
37213817 TCATTTTACCCTATGG-GGTATTTCAGA
1 TCATTTTACCCTATGGAGGTATTTC-GA
37213844 -CATTTTACCCTATGGAGGTATTTCGA
1 TCATTTTACCCTATGGAGGTATTTCGA
* *
37213870 TCATTCTACCCTATGGGGGTATTTC-A
1 TCATTTTACCCTATGGAGGTATTTCGA
* * *
37213896 GTCATTTTACCCTTTAGTGGTATTTC-A
1 -TCATTTTACCCTATGGAGGTATTTCGA
* *
37213923 GTCATTTTACCCTTTAGG-GGTATTTCGG
1 -TCATTTTACCCTAT-GGAGGTATTTCGA
** * *
37213951 TCATTTTACTGTATGGGGGTATTT-TA
1 TCATTTTACCCTATGGAGGTATTTCGA
*
37213977 GTCATTTTACCCTAT-GAGGGTATTTTGGA
1 -TCATTTTACCCTATGGA-GGTA-TTTCGA
* * * *
37214006 -CACTTTACCCTAT-AAGGGTATTTTGG
1 TCATTTTACCCTATGGA-GGTATTTCGA
* * * *
37214032 TCATTCTACCCTATGAAGGTATTTTGG
1 TCATTTTACCCTATGGAGGTATTTCGA
* * * *
37214059 TTATTTTACCTTATTGGGGGTATTT-TA
1 TCATTTTACCCTA-TGGAGGTATTTCGA
*
37214086 GTCATTTTACCCTATGGGGGTATTTCGA
1 -TCATTTTACCCTATGGAGGTATTTCGA
37214114 TCATTTTACCCTAT-GAGGGTATTTC-A
1 TCATTTTACCCTATGGA-GGTATTTCGA
* *
37214140 GCCATTTTACCCTAT-GAGGGTATTT-TA
1 -TCATTTTACCCTATGGA-GGTATTTCGA
*
37214167 GTCATTTTACCCTATAGG-TGTATTTC-A
1 -TCATTTTACCCTAT-GGAGGTATTTCGA
* * *
37214194 GTTATTTTACCTTATGGGGGTATTTC-A
1 -TCATTTTACCCTATGGAGGTATTTCGA
* *
37214221 GTCATTTTACCCTATGGGGGTATTT-TA
1 -TCATTTTACCCTATGGAGGTATTTCGA
*
37214248 GTCATTTTACCCTAT-GAGGGTATTTCGG
1 -TCATTTTACCCTATGGA-GGTATTTCGA
*
37214276 TCATTTTACCCTAT-GAGGGTATTTCGG
1 TCATTTTACCCTATGGA-GGTATTTCGA
* *
37214303 TCATTCTACCCTATGGGGGTATTTCGA
1 TCATTTTACCCTATGGAGGTATTTCGA
* *
37214330 TCATTTTACCCTATGGGGGTACTTT-GG
1 TCATTTTACCCTATGGAGGTA-TTTCGA
* * *
37214357 TCATTTTACCCTATGGGGGTACTTCGG
1 TCATTTTACCCTATGGAGGTATTTCGA
* *
37214384 TTATTTTACCCTAT----GTACTTT-GG
1 TCATTTTACCCTATGGAGGTA-TTTCGA
37214407 TCATTTTACCCTAT-GAGGGTATTTC-A
1 TCATTTTACCCTATGGA-GGTATTTCGA
* *
37214433 GTCATTTTATCCC-ATGGGGGTATTTCGG
1 -TCATTTTA-CCCTATGGAGGTATTTCGA
*
37214461 TCATTTTACCCCATGGAGGTATTTCGA
1 TCATTTTACCCTATGGAGGTATTTCGA
*
37214488 TTATTT
1 TCATTT
37214494 ATTGACCTCT
Statistics
Matches: 551, Mismatches: 60, Indels: 78
0.80 0.09 0.11
Matches are distributed among these distances:
23 18 0.03
24 2 0.00
26 38 0.07
27 456 0.83
28 35 0.06
29 2 0.00
ACGTcount: A:0.19, C:0.17, G:0.21, T:0.43
Consensus pattern (27 bp):
TCATTTTACCCTATGGAGGTATTTCGA
Found at i:37213907 original size:54 final size:55
Alignment explanation
Indices: 37213815--37214485 Score: 711
Period size: 54 Copynumber: 12.5 Consensus size: 55
37213805 GGGGTATAAC
* *
37213815 AGTCATTTTACCCTAT-GGGGTATTTCAGACATTTTACCCTATGGAGGTATTTCG
1 AGTCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTATGGGGGTATTTCG
* * * *
37213869 A-TCATTCTACCCTATGGGGGTATTTCAGTCATTTTACCCTTTAGTGGTATTTC-
1 AGTCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTATGGGGGTATTTCG
* * * ** *
37213922 AGTCATTTTACCCTTTAGGGGTATTTCGGTCATTTTACTGTATGGGGGTATTT-T
1 AGTCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTATGGGGGTATTTCG
* ** * * ** *
37213976 AGTCATTTTACCCTATGAGGGTATTTTGGACACTTTACCCTATAAGGGTATTTTG
1 AGTCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTATGGGGGTATTTCG
* ** ** * * *
37214031 -GTCATTCTACCCTATGAAGGTATTTTGGTTATTTTACCTTATTGGGGGTATTT-T
1 AGTCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTA-TGGGGGTATTTCG
*
37214085 AGTCATTTTACCCTATGGGGGTATTTC-GATCATTTTACCCTATGAGGGTATTTC-
1 AGTCATTTTACCCTATGGGGGTATTTCAG-TCATTTTACCCTATGGGGGTATTTCG
* * * * *
37214139 AGCCATTTTACCCTATGAGGGTATTTTAGTCATTTTACCCTATAGGTGTATTTC-
1 AGTCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTATGGGGGTATTTCG
* * *
37214193 AGTTATTTTACCTTATGGGGGTATTTCAGTCATTTTACCCTATGGGGGTATTT-T
1 AGTCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTATGGGGGTATTTCG
* * *
37214247 AGTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCG
1 AGTCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTATGGGGGTATTTCG
*
37214302 -GTCATTCTACCCTATGGGGGTATTTC-GATCATTTTACCCTATGGGGGTACTTT-G
1 AGTCATTTTACCCTATGGGGGTATTTCAG-TCATTTTACCCTATGGGGGTA-TTTCG
* * *
37214356 -GTCATTTTACCCTATGGGGGTACTTCGGTTATTTTACCCTAT----GTACTTT-G
1 AGTCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTATGGGGGTA-TTTCG
*
37214406 -GTCATTTTACCCTATGAGGGTATTTCAGTCATTTTATCCC-ATGGGGGTATTTCG
1 AGTCATTTTACCCTATGGGGGTATTTCAGTCATTTTA-CCCTATGGGGGTATTTCG
* *
37214460 -GTCATTTTACCCCATGGAGGTATTTC
1 AGTCATTTTACCCTATGGGGGTATTTC
37214486 GATTATTTAT
Statistics
Matches: 524, Mismatches: 73, Indels: 40
0.82 0.11 0.06
Matches are distributed among these distances:
50 42 0.08
51 3 0.01
53 18 0.03
54 414 0.79
55 47 0.09
ACGTcount: A:0.19, C:0.18, G:0.21, T:0.42
Consensus pattern (55 bp):
AGTCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTATGGGGGTATTTCG
Found at i:37213946 original size:81 final size:80
Alignment explanation
Indices: 37213805--37214471 Score: 647
Period size: 81 Copynumber: 8.3 Consensus size: 80
37213795 TCATCTCCTA
** * * *
37213805 GGGGTATAACAGTCATTTTACCCTAT-GGGGTATTTCAGACATTTTACCCTATGGAGGTATTTCG
1 GGGGTATTTCAGTCATTTTACCCTTTAGGGGTATTTTAGTCATTTTACCCTATGG-GGTATTTCG
*
37213869 ATCATTCTACCCTATG
65 ATCATTTTACCCTATG
* * *
37213885 GGGGTATTTCAGTCATTTTACCCTTTAGTGGTATTTCAGTCATTTTACCCTTTAGGGGTATTTCG
1 GGGGTATTTCAGTCATTTTACCCTTTAGGGGTATTTTAGTCATTTTACCCTAT-GGGGTATTTCG
* **
37213950 GTCATTTTACTGTATG
65 ATCATTTTACCCTATG
* * * * * * *
37213966 GGGGTATTTTAGTCATTTTACCCTAT-GAGGGTATTTTGGACACTTTACCCTATAAGGGTATTTT
1 GGGGTATTTCAGTCATTTTACCCTTTAG-GGGTATTTTAGTCATTTTACCCTAT-GGGGTATTTC
* *
37214030 GGTCATTCTACCCTATG
64 GATCATTTTACCCTATG
** ** * * *
37214047 AAGGTATTTTGGTTATTTTACCTTATTGGGGGTATTTTAGTCATTTTACCCTATGGGGGTATTTC
1 GGGGTATTTCAGTCATTTTACCCT-TTAGGGGTATTTTAGTCATTTTACCCTAT-GGGGTATTTC
37214112 GATCATTTTACCCTATG
64 GATCATTTTACCCTATG
* * * *
37214129 AGGGTATTTCAGCCATTTTACCCTAT-GAGGGTATTTTAGTCATTTTACCCTATAGGTGTATTTC
1 GGGGTATTTCAGTCATTTTACCCTTTAG-GGGTATTTTAGTCATTTTACCCTAT-GGGGTATTTC
* *
37214193 -AGTTATTTTACCTTATG
64 GA-TCATTTTACCCTATG
* *
37214210 GGGGTATTTCAGTCATTTTACCCTATGGGGGTATTTTAGTCATTTTACCCTATGAGGGTATTTCG
1 GGGGTATTTCAGTCATTTTACCCTTTAGGGGTATTTTAGTCATTTTACCCTATG-GGGTATTTCG
*
37214275 GTCATTTTACCCTATG
65 ATCATTTTACCCTATG
* * * * * *
37214291 AGGGTATTTCGGTCATTCTACCCTATGGGGGTA-TTTCGATCATTTTACCCTATGGGGGTACTTT
1 GGGGTATTTCAGTCATTTTACCCTTTAGGGGTATTTTAG-TCATTTTACCCTAT-GGGGTA-TTT
*
37214355 -GGTCATTTTACCCTATG
63 CGATCATTTTACCCTATG
* * * * * *
37214372 GGGGTACTTCGGTTATTTTACCC--TA--TGTACTTTGGTCATTTTACCCTATGAGGGTATTTC-
1 GGGGTATTTCAGTCATTTTACCCTTTAGGGGTATTTTAGTCATTTTACCCTATG-GGGTATTTCG
37214432 AGTCATTTTATCCC-ATG
65 A-TCATTTTA-CCCTATG
*
37214449 GGGGTATTTCGGTCATTTTACCC
1 GGGGTATTTCAGTCATTTTACCC
37214472 CATGGAGGTA
Statistics
Matches: 501, Mismatches: 68, Indels: 39
0.82 0.11 0.06
Matches are distributed among these distances:
76 4 0.01
77 54 0.11
78 7 0.01
79 1 0.00
80 31 0.06
81 332 0.66
82 71 0.14
83 1 0.00
ACGTcount: A:0.19, C:0.18, G:0.21, T:0.42
Consensus pattern (80 bp):
GGGGTATTTCAGTCATTTTACCCTTTAGGGGTATTTTAGTCATTTTACCCTATGGGGTATTTCGA
TCATTTTACCCTATG
Found at i:37219949 original size:43 final size:43
Alignment explanation
Indices: 37219901--37219985 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 43
37219891 TACAGGGGAC
* *
37219901 ACACGCCCGTGTGGCAAGGT-CGTGTGTCGT-ACACGGCCAAGAG
1 ACACGCCCGTGTAGCAA-ATCCGTGTGTC-TCACACGGCCAAGAG
37219944 ACACGCCCGTGTAGCAAATCCGTGTGTCTCACACGGCCAAGA
1 ACACGCCCGTGTAGCAAATCCGTGTGTCTCACACGGCCAAGA
37219986 CACATGCCTA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
42 2 0.05
43 36 0.95
ACGTcount: A:0.24, C:0.31, G:0.29, T:0.16
Consensus pattern (43 bp):
ACACGCCCGTGTAGCAAATCCGTGTGTCTCACACGGCCAAGAG
Found at i:37235748 original size:11 final size:13
Alignment explanation
Indices: 37235720--37235748 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
37235710 AGGGGAAAGG
37235720 TTTTTTGTTTCTA
1 TTTTTTGTTTCTA
37235733 TTTTTT-TTTCTA
1 TTTTTTGTTTCTA
37235745 TTTT
1 TTTT
37235749 CCTTTTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.07, C:0.07, G:0.03, T:0.83
Consensus pattern (13 bp):
TTTTTTGTTTCTA
Found at i:37242585 original size:19 final size:20
Alignment explanation
Indices: 37242539--37242592 Score: 58
Period size: 19 Copynumber: 2.7 Consensus size: 20
37242529 CAAAAATTAT
37242539 GAAGTACTGAAAATTTTGAAC
1 GAAGTACT-AAAATTTTGAAC
* *
37242560 G-ATTACTAAAATTTTG-AG
1 GAAGTACTAAAATTTTGAAC
37242578 GAAGTACTAAGAATT
1 GAAGTACTAA-AATT
37242593 ATCCCCAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 2 0.07
19 16 0.57
20 9 0.32
21 1 0.04
ACGTcount: A:0.43, C:0.07, G:0.19, T:0.31
Consensus pattern (20 bp):
GAAGTACTAAAATTTTGAAC
Found at i:37242628 original size:20 final size:20
Alignment explanation
Indices: 37242599--37242636 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
37242589 AATTATCCCC
37242599 AATACGAAAAAACATGAGGG
1 AATACGAAAAAACATGAGGG
* *
37242619 AATACTAAAAACCATGAG
1 AATACGAAAAAACATGAG
37242637 AAAGTACCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.55, C:0.13, G:0.18, T:0.13
Consensus pattern (20 bp):
AATACGAAAAAACATGAGGG
Found at i:37244434 original size:3 final size:3
Alignment explanation
Indices: 37244428--37244495 Score: 91
Period size: 3 Copynumber: 22.7 Consensus size: 3
37244418 CATCATCATC
* **
37244428 ATT ATT ATT ATT ATT ATT ATT ATT ATT ACT ATT ATT ATT ATT GGT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
37244476 ATT ATT TTT ATT ATT TTT AT
1 ATT ATT ATT ATT ATT ATT AT
37244496 CAACTTATTT
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.29, C:0.01, G:0.03, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:37244798 original size:4 final size:4
Alignment explanation
Indices: 37244789--37244823 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
37244779 TATTTTCATT
37244789 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
37244824 ATCTATTGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:37244911 original size:29 final size:27
Alignment explanation
Indices: 37244873--37244950 Score: 102
Period size: 29 Copynumber: 2.8 Consensus size: 27
37244863 CTCTTTCAAA
37244873 TATTTTAATATCTTTAATTTATTTCAACT
1 TATTTTAATAT-TTTAATTTATTT-AACT
* *
37244902 TATTTCAATATTGTTAATTTATTTAAGT
1 TATTTTAATATT-TTAATTTATTTAACT
*
37244930 TATTTTAACATTTTAATTTAT
1 TATTTTAATATTTTAATTTAT
37244951 ATATATTATA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
27 9 0.20
28 14 0.32
29 21 0.48
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.59
Consensus pattern (27 bp):
TATTTTAATATTTTAATTTATTTAACT
Found at i:37249882 original size:21 final size:22
Alignment explanation
Indices: 37249857--37249907 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 22
37249847 ATATTTCAAA
*
37249857 AAAAATAATGAATAA-AAAAAT
1 AAAAATAATGAAGAAGAAAAAT
* *
37249878 GAAAATGATGAAGAAGAAAAAT
1 AAAAATAATGAAGAAGAAAAAT
37249900 AAAAATAA
1 AAAAATAA
37249908 AAGGAAAAGA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 12 0.50
22 12 0.50
ACGTcount: A:0.73, C:0.00, G:0.12, T:0.16
Consensus pattern (22 bp):
AAAAATAATGAAGAAGAAAAAT
Found at i:37251341 original size:44 final size:44
Alignment explanation
Indices: 37251291--37252176 Score: 499
Period size: 44 Copynumber: 20.6 Consensus size: 44
37251281 AAACCAATCC
* **
37251291 TATCTCTCTGAAGTTGTAGTGGAGTGGATTAAAACCACAGATCT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCT
* *** * *
37251335 TATCTCTCTGAAGTTGCAGTAGAGCAGA-TCGCATC-TAG-TCT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCT
* * ** ** * *
37251376 TATCTCCCTGAAGTTGTAGTGGAAAAGACGAAGAAAC-CA-ATCC
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAA-AACCACAGATCT
* *
37251419 TCTCTCTCTAAAGTTGCAGTGGAGCAGATTAAAACCACAGATCT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCT
* * * *** *
37251463 TATCTCTCTGAAGTTGCAATAGAGCATA-TCGCATC-CAG-TCT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCT
* * * * *
37251504 TATCTCTCTAAAGTTGCAATGGAGCAGATAGAAGAAAC-CA-ATCC
1 TATCTCTCTGAAGTTGCAGTGGAGCAGAT-TAA-AACCACAGATCT
* *
37251548 TATCTCCCTGAAGTTACAGTGGAGC-GAATTAAAACCACAGATCT
1 TATCTCTCTGAAGTTGCAGTGGAGCAG-ATTAAAACCACAGATCT
** ** ** *
37251592 TATCTCTCTGAAGTTTTAGAAGAGCAGATT-GCATC-CAG-TCT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCT
* * * * *
37251633 TATCTCCCTGAATTTGCAGTGGAGCA-AATAGAAGA-AACTA-ATCC
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTA-AA-ACCAC-AGATCT
* * * *
37251677 TATCTCCCTAAAGTTGCAGTGGAACAGATTAAAACCACAAATCT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCT
* * ** *
37251721 TATCTCTCTGAAGTTGTAGTAGAGCAGATT-GCATC-CAG-TCT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCT
* * * ** * *
37251762 TATCTCCCTGAATTTACAGTGGAGCA-AACAGAAGA-AACTA-ATCC
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTA-AA-ACCAC-AGATCT
* *
37251806 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCT
* ** *
37251850 TATCTCTCTGAAGTTGCAGTAGAGCAGATT-GCATC-CAG-TCT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCT
* * ** *
37251891 TATCTCCCTGAAGTTGCAGTGGAGCAGA-CAAAAGAAACCA-ATCC
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAA-CCA-CAGATCT
* **
37251935 TATCTC-CTTGAAGTTGCAGTGGAGCGGATTAAAACCACTTATCT
1 TATCTCTC-TGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCT
* * * * *** * *
37251979 TATCTCTGTAAAGTTGCAGTAGAGCA-AATCGTATC-CAG-TAT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCT
* * * * *
37252020 TATCTTTCTGAAGTTGCAATGGAGCAGATAGAAGAAAC-CA-ATCC
1 TATCTCTCTGAAGTTGCAGTGGAGCAGAT-TAA-AACCACAGATCT
* *
37252064 TATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAACCACAGATCT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCT
* * ** **
37252108 TATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAATGATGGATCT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCT
* * *
37252152 CATCTCTCTAAAGTTGCAGTAGAGC
1 TATCTCTCTGAAGTTGCAGTGGAGC
37252177 GGATCGCATC
Statistics
Matches: 626, Mismatches: 170, Indels: 92
0.70 0.19 0.10
Matches are distributed among these distances:
40 3 0.00
41 154 0.25
42 24 0.04
43 66 0.11
44 369 0.59
45 10 0.02
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (44 bp):
TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCT
Found at i:37251531 original size:85 final size:85
Alignment explanation
Indices: 37251421--37252176 Score: 403
Period size: 85 Copynumber: 8.8 Consensus size: 85
37251411 ACCAATCCTC
* * *
37251421 TCTCTCTAAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAATAGA
1 TCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCCCTGAAGTTGCAGTAGA
* *
37251486 GCATATCGCATCCAGTCTTA
66 GCATATAGAATCCAGTCTTA
* * * * * * *
37251506 TCTCTCTAAAGTTGCAATGGAGCAGATAGAAGAAAC-CA-ATCCTATCTCCCTGAAGTTACAGTG
1 TCTCTCTGAAGTTGCAGTGGAGCAGAT-TAA-AACCACAGATCTTATCTCCCTGAAGTTGCAGTA
* *
37251569 GAGCGA-ATTAAAACCACAGATCTTA
64 GAGC-ATA-TAGAATC-CAG-TCTTA
** ** ** * * *
37251594 TCTCTCTGAAGTTTTAGAAGAGCAGATT-GCATC-CAG-TCTTATCTCCCTGAATTTGCAGTGGA
1 TCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCCCTGAAGTTGCAGTAGA
* * * * *
37251656 GCAAATAGAAGAAACTAATCCTA
66 GC--ATA-TAGAATCCAGTCTTA
* * * * * *
37251679 TCTCCCTAAAGTTGCAGTGGAACAGATTAAAACCACAAATCTTATCTCTCTGAAGTTGTAGTAGA
1 TCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCCCTGAAGTTGCAGTAGA
* * *
37251744 GCAGATTGCATCCAGTCTTA
66 GCATATAGAATCCAGTCTTA
* * * ** * *
37251764 TCTCCCTGAATTTACAGTGGAGCA-AACAGAAGA-AACTA-ATCCTATCTCCCTGAAGTTGCAGT
1 TCTCTCTGAAGTTGCAGTGGAGCAGATTA-AA-ACCAC-AGATCTTATCTCCCTGAAGTTGCAGT
* * *
37251826 GGAGCGGAT-TAAAACCACAGATCTTA
63 AGAGC--ATATAGAATC-CAG-TCTTA
* ** *
37251852 TCTCTCTGAAGTTGCAGTAGAGCAGATT-GCATC-CAG-TCTTATCTCCCTGAAGTTGCAGTGGA
1 TCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCCCTGAAGTTGCAGT--A
* * * *
37251914 GCAGACA-AAAGAAACCAATCCTA
64 G-AG-CATATAGAATCCAGTCTTA
* ** ** *
37251937 TCTC-CTTGAAGTTGCAGTGGAGCGGATTAAAACCACTTATCTTATCTCTGTAAAGTTGCAGTAG
1 TCTCTC-TGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCCCTGAAGTTGCAGTAG
* * * *
37252001 AGCAAATCGTATCCAGTATTA
65 AGCATATAGAATCCAGTCTTA
* * * * * * *
37252022 TCTTTCTGAAGTTGCAATGGAGCAGATAGAAGAAAC-CA-ATCCTATCTCCCTAAAGTTGCAGTG
1 TCTCTCTGAAGTTGCAGTGGAGCAGAT-TAA-AACCACAGATCTTATCTCCCTGAAGTTGCAGTA
* * *
37252085 GAGCAGATTAAAACCACAGATCTTA
64 GAGCATA-TAGAATC-CAG-TCTTA
* * ** ** * * *
37252110 TCTCCCTGAAGTTGCAGTGGAGCAGATCAAAATGATGGATCTCATCTCTCTAAAGTTGCAGTAGA
1 TCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCCCTGAAGTTGCAGTAGA
37252175 GC
66 GC
37252177 GGATCGCATC
Statistics
Matches: 498, Mismatches: 133, Indels: 77
0.70 0.19 0.11
Matches are distributed among these distances:
84 5 0.01
85 273 0.55
86 36 0.07
87 32 0.06
88 150 0.30
89 2 0.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.27
Consensus pattern (85 bp):
TCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCCCTGAAGTTGCAGTAGA
GCATATAGAATCCAGTCTTA
Found at i:37251616 original size:129 final size:129
Alignment explanation
Indices: 37251271--37252137 Score: 1184
Period size: 129 Copynumber: 6.7 Consensus size: 129
37251261 CCCTAGAGAA
* * * * *
37251271 CAGATCGAAGAAACCAATCCTATCTCTCTGAAGTTGTAGTGGAGTGGATTAAAACCACAGATCTT
1 CAGATAGAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGAATTAAAACCACAGATCTT
* * *
37251336 ATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGTAGTGGAA
66 ATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAG
* * * * *
37251400 AAGA-CGAAGAAACCAATCCTCTCTCTCTAAAGTTGCAGTGGAGC-AGATTAAAACCACAGATCT
1 CAGATAGAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGA-ATTAAAACCACAGATCT
* * * * *
37251463 TATCTCTCTGAAGTTGCAATAGAGCATATCGCATCCAGTCTTATCTCTCTAAAGTTGCAATGGAG
65 TATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAG
*
37251528 CAGATAGAAGAAACCAATCCTATCTCCCTGAAGTTACAGTGGAGCGAATTAAAACCACAGATCTT
1 CAGATAGAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGAATTAAAACCACAGATCTT
** * * *
37251593 ATCTCTCTGAAGTTTTAGAAGAGCAGATTGCATCCAGTCTTATCTCCCTGAATTTGCAGTGGAG
66 ATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAG
* * * * *
37251657 CAAATAGAAGAAACTAATCCTATCTCCCTAAAGTTGCAGTGGAAC-AGATTAAAACCACAAATCT
1 CAGATAGAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGA-ATTAAAACCACAGATCT
* * * *
37251721 TATCTCTCTGAAGTTGTAGTAGAGCAGATTGCATCCAGTCTTATCTCCCTGAATTTACAGTGGAG
65 TATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAG
* * * *
37251786 CAAACAGAAGAAACTAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTT
1 CAGATAGAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGAATTAAAACCACAGATCTT
*
37251851 ATCTCTCTGAAGTTGCAGTAGAGCAGATTGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAG
66 ATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAG
* * * * **
37251915 CAGACAAAAGAAACCAATCCTATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAACCACTTATCTT
1 CAGATAGAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGAATTAAAACCACAGATCTT
* * * * * ** *
37251980 ATCTCTGTAAAGTTGCAGTAGAGCAAATCGTATCCAGTATTATCTTTCTGAAGTTGCAATGGAG
66 ATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAG
*
37252044 CAGATAGAAGAAACCAATCCTATCTCCCTAAAGTTGCAGTGGAGC-AGATTAAAACCACAGATCT
1 CAGATAGAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGA-ATTAAAACCACAGATCT
* *
37252108 TATCTCCCTGAAGTTGCAGTGGAGCAGATC
65 TATCTCTCTGAAGTTGCAGTAGAGCAGATC
37252138 AAAATGATGG
Statistics
Matches: 658, Mismatches: 74, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
128 114 0.17
129 543 0.83
130 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (129 bp):
CAGATAGAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGAATTAAAACCACAGATCTT
ATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAG
Found at i:37253583 original size:3 final size:3
Alignment explanation
Indices: 37253575--37253662 Score: 61
Period size: 3 Copynumber: 29.7 Consensus size: 3
37253565 TTAGTTTAAG
* * * * * * *
37253575 ATT ATT ATT AAT -TT AGT ATC ATT ATT ATT AGT AGT AGT ACT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
** * * *
37253622 ATT ATT GGT ATT ATT ATT CTT ATT ATT TTT ATT ATT TTT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
37253663 CAACTTATTT
Statistics
Matches: 65, Mismatches: 19, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
2 1 0.02
3 64 0.98
ACGTcount: A:0.30, C:0.03, G:0.07, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:37253636 original size:18 final size:18
Alignment explanation
Indices: 37253575--37253662 Score: 70
Period size: 18 Copynumber: 4.8 Consensus size: 18
37253565 TTAGTTTAAG
*
37253575 ATTATTATTAAT-TTAGT
1 ATTATTATTATTATTAGT
*
37253592 ATCATTATTATTAGTAGTAGT
1 ATTATTATTATTA-T--TAGT
* *
37253613 ACTATTATTATTATTGGT
1 ATTATTATTATTATTAGT
* *
37253631 ATTATTATTCTTATTATT
1 ATTATTATTATTATTAGT
* *
37253649 TTTATTATTTTTAT
1 ATTATTATTATTAT
37253663 CAACTTATTT
Statistics
Matches: 56, Mismatches: 11, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
17 10 0.18
18 29 0.52
19 1 0.02
20 1 0.02
21 15 0.27
ACGTcount: A:0.30, C:0.03, G:0.07, T:0.60
Consensus pattern (18 bp):
ATTATTATTATTATTAGT
Found at i:37254056 original size:29 final size:28
Alignment explanation
Indices: 37254023--37254095 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 28
37254013 TAAATAGTTT
*
37254023 AATATCTTTAATTTATTTCAACTTATTTC
1 AATAT-TTTAATTTATTTAAACTTATTTC
* *
37254052 AATATTGTTAATTTATTTAAATTTATTTT
1 AATATT-TTAATTTATTTAAACTTATTTC
*
37254081 AACATTTTAATTTAT
1 AATATTTTAATTTAT
37254096 ATATTATATT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
28 10 0.26
29 29 0.74
ACGTcount: A:0.34, C:0.07, G:0.01, T:0.58
Consensus pattern (28 bp):
AATATTTTAATTTATTTAAACTTATTTC
Found at i:37255668 original size:20 final size:20
Alignment explanation
Indices: 37255631--37255668 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
37255621 CCAAACTCTT
*
37255631 AAACCTTGAACTTGAACCCC
1 AAACCTTGAACTTAAACCCC
37255651 AAACC-TGAACCTTAAACC
1 AAACCTTGAA-CTTAAACC
37255669 TTAAATCTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.39, C:0.34, G:0.08, T:0.18
Consensus pattern (20 bp):
AAACCTTGAACTTAAACCCC
Found at i:37255806 original size:10 final size:11
Alignment explanation
Indices: 37255781--37255807 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
37255771 ATGACATGGA
37255781 AAAAATTGCAC
1 AAAAATTGCAC
37255792 AAAAATTGCAC
1 AAAAATTGCAC
37255803 AAAAA
1 AAAAA
37255808 ATAAGTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.63, C:0.15, G:0.07, T:0.15
Consensus pattern (11 bp):
AAAAATTGCAC
Found at i:37256265 original size:28 final size:28
Alignment explanation
Indices: 37256200--37256277 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 28
37256190 ATGAAAGCTA
**
37256200 AGAAGAGAAAGAAAAGCAAGAGAAGTTG
1 AGAAGAGAAAGAAAAGCAAGAGAAGCAG
* *
37256228 AGGAGAGAAAGAAAAGCGAGAGAAGCAG
1 AGAAGAGAAAGAAAAGCAAGAGAAGCAG
*
37256256 AGAAGTGAAAGAAGAA-CAAGAG
1 AGAAGAGAAAGAA-AAGCAAGAG
37256278 GTTGATGAAG
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
28 40 0.95
29 2 0.05
ACGTcount: A:0.56, C:0.05, G:0.35, T:0.04
Consensus pattern (28 bp):
AGAAGAGAAAGAAAAGCAAGAGAAGCAG
Found at i:37256290 original size:6 final size:6
Alignment explanation
Indices: 37256281--37256306 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
37256271 ACAAGAGGTT
37256281 GATGAA GATGAA GATGAA GATGAA GA
1 GATGAA GATGAA GATGAA GATGAA GA
37256307 GAGAAAACAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.35, T:0.15
Consensus pattern (6 bp):
GATGAA
Found at i:37256807 original size:28 final size:28
Alignment explanation
Indices: 37256776--37256830 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
37256766 TAAGAATCTC
*
37256776 AAACCATGAACCCAAAAC-CTATAACCTT
1 AAACCATAAACCCAAAACTC-ATAACCTT
* *
37256804 AAACCCTAAATCCAAAACTCATAACCT
1 AAACCATAAACCCAAAACTCATAACCT
37256831 ATAACCCCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 22 0.96
29 1 0.04
ACGTcount: A:0.47, C:0.33, G:0.02, T:0.18
Consensus pattern (28 bp):
AAACCATAAACCCAAAACTCATAACCTT
Found at i:37256851 original size:22 final size:20
Alignment explanation
Indices: 37256826--37256873 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 20
37256816 CAAAACTCAT
*
37256826 AACCTATAACCCCAAACACTTG
1 AACCT-TAAACCCAAAC-CTTG
*
37256848 AACCTTAAACCCGAACCTTG
1 AACCTTAAACCCAAACCTTG
37256868 AACCTT
1 AACCTT
37256874 GAATCTTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 10 0.42
21 9 0.38
22 5 0.21
ACGTcount: A:0.38, C:0.35, G:0.06, T:0.21
Consensus pattern (20 bp):
AACCTTAAACCCAAACCTTG
Found at i:37256870 original size:7 final size:7
Alignment explanation
Indices: 37256844--37256886 Score: 52
Period size: 7 Copynumber: 6.3 Consensus size: 7
37256834 ACCCCAAACA
37256844 CTTGAAC
1 CTTGAAC
*
37256851 CTTAAAC
1 CTTGAAC
*
37256858 C-CGAAC
1 CTTGAAC
37256864 CTTGAAC
1 CTTGAAC
*
37256871 CTTGAAT
1 CTTGAAC
37256878 CTTGAAC
1 CTTGAAC
37256885 CT
1 CT
37256887 CAAGATTTCG
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
6 4 0.14
7 25 0.86
ACGTcount: A:0.30, C:0.30, G:0.12, T:0.28
Consensus pattern (7 bp):
CTTGAAC
Found at i:37257424 original size:28 final size:28
Alignment explanation
Indices: 37257393--37257488 Score: 131
Period size: 28 Copynumber: 3.4 Consensus size: 28
37257383 AAAGCAGAGA
*
37257393 AGAGAAAGAAAAGCAAGAGAAGAAGATG
1 AGAGAAAGAAAAGCAAAAGAAGAAGATG
37257421 AGAGAAAGAAAAGCAAAAGAAGAAGA-G
1 AGAGAAAGAAAAGCAAAAGAAGAAGATG
* * * *
37257448 AAGAGAAATAAAACCAAAAGAAGAAAATA
1 -AGAGAAAGAAAAGCAAAAGAAGAAGATG
37257477 AGAGAAAGAAAA
1 AGAGAAAGAAAA
37257489 ATAAGAGGTT
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
27 1 0.02
28 59 0.98
ACGTcount: A:0.68, C:0.04, G:0.25, T:0.03
Consensus pattern (28 bp):
AGAGAAAGAAAAGCAAAAGAAGAAGATG
Found at i:37258042 original size:22 final size:20
Alignment explanation
Indices: 37257994--37258043 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
37257984 CATGTAATCC
*
37257994 CAAACCCTAAATCTCAAACT
1 CAAACCCTAAACCTCAAACT
*
37258014 CATAACCCTAAACCCTTAAACT
1 CA-AACCCTAAA-CCTCAAACT
37258036 CTAAACCC
1 C-AAACCC
37258044 AAATAATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 2 0.08
21 9 0.36
22 13 0.52
23 1 0.04
ACGTcount: A:0.42, C:0.38, G:0.00, T:0.20
Consensus pattern (20 bp):
CAAACCCTAAACCTCAAACT
Found at i:37259881 original size:28 final size:28
Alignment explanation
Indices: 37259803--37259875 Score: 101
Period size: 28 Copynumber: 2.6 Consensus size: 28
37259793 ATGGAAACGT
*
37259803 GAAATCAGAGAAGAGAAAGAAAAGCAAGC
1 GAAA-CAGAGAAGAGAAAGAAAAGCAAGA
** *
37259832 GAAGTAGAGTAGAGAAAGAAAAGCAAGA
1 GAAACAGAGAAGAGAAAGAAAAGCAAGA
37259860 GAAACAGAGAAGAGAA
1 GAAACAGAGAAGAGAA
37259876 GTAAAAATAA
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
28 34 0.92
29 3 0.08
ACGTcount: A:0.59, C:0.07, G:0.30, T:0.04
Consensus pattern (28 bp):
GAAACAGAGAAGAGAAAGAAAAGCAAGA
Found at i:37260343 original size:20 final size:21
Alignment explanation
Indices: 37260291--37260347 Score: 71
Period size: 20 Copynumber: 2.8 Consensus size: 21
37260281 ATTAAACCTC
37260291 AAGGTTCGGGGTTCAAGCTTT
1 AAGGTTCGGGGTTCAAGCTTT
* * *
37260312 AAGATTCAGGGTTCGA-CTTT
1 AAGGTTCGGGGTTCAAGCTTT
*
37260332 AAGGTTTGGGGTTCAA
1 AAGGTTCGGGGTTCAA
37260348 AGTAAAGTTA
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
20 16 0.55
21 13 0.45
ACGTcount: A:0.23, C:0.12, G:0.32, T:0.33
Consensus pattern (21 bp):
AAGGTTCGGGGTTCAAGCTTT
Found at i:37260460 original size:7 final size:7
Alignment explanation
Indices: 37260448--37260477 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
37260438 TTTTTTTTTG
37260448 TAGAAGA
1 TAGAAGA
37260455 TAGAAGA
1 TAGAAGA
37260462 TAGAAGA
1 TAGAAGA
37260469 TAGAAGA
1 TAGAAGA
37260476 TA
1 TA
37260478 TTTAAAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.57, C:0.00, G:0.27, T:0.17
Consensus pattern (7 bp):
TAGAAGA
Found at i:37260850 original size:28 final size:27
Alignment explanation
Indices: 37260787--37260868 Score: 110
Period size: 28 Copynumber: 3.0 Consensus size: 27
37260777 ACATGAAAGG
* *
37260787 AGAGAAGAGAAAGAAAGCAAGAGAAGT
1 AGAGAAGAGAAAGAAAACAAGAGAAGC
* *
37260814 AGAGGAGAGAAAGAAACACAAAAGAAGC
1 AGAGAAGAGAAAGAAA-ACAAGAGAAGC
37260842 AGAGAAGAGAAAGAAAAACAAGAGAAG
1 AGAGAAGAGAAAG-AAAACAAGAGAAG
37260869 TGTAACATCC
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
27 15 0.32
28 29 0.62
29 3 0.06
ACGTcount: A:0.62, C:0.06, G:0.30, T:0.01
Consensus pattern (27 bp):
AGAGAAGAGAAAGAAAACAAGAGAAGC
Found at i:37263994 original size:21 final size:20
Alignment explanation
Indices: 37263969--37264030 Score: 67
Period size: 18 Copynumber: 3.2 Consensus size: 20
37263959 ATCTCGTAAC
37263969 TCCTAAACCCAAACCCTTGAA
1 TCCTAAACCCAAA-CCTTGAA
** *
37263990 TCCTAAACTTAAACTTTGAA
1 TCCTAAACCCAAACCTTGAA
37264010 -CC-AAACCCAAACCTTG-A
1 TCCTAAACCCAAACCTTGAA
37264027 TCCT
1 TCCT
37264031 TAAATCCTAA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
17 1 0.03
18 13 0.39
19 2 0.06
20 6 0.18
21 11 0.33
ACGTcount: A:0.37, C:0.34, G:0.05, T:0.24
Consensus pattern (20 bp):
TCCTAAACCCAAACCTTGAA
Found at i:37264581 original size:28 final size:28
Alignment explanation
Indices: 37264544--37264677 Score: 153
Period size: 28 Copynumber: 4.8 Consensus size: 28
37264534 ATGAAAGGAG
* *
37264544 AGAAAAGAAAGAAAGACCAGAGAAGCAA
1 AGAAGAGAAAGAAAGACAAGAGAAGCAA
* * *
37264572 AGGAGAGAAAGAAACACAAGAGAAGCAG
1 AGAAGAGAAAGAAAGACAAGAGAAGCAA
* * *
37264600 AGAAGTGAAAGAAAAACAAAAGAAGCAA
1 AGAAGAGAAAGAAAGACAAGAGAAGCAA
* *
37264628 AGGAGAGAAAGAAACG-CAAGAGAAACAA
1 AGAAGAGAAAGAAA-GACAAGAGAAGCAA
*
37264656 AGAAGAGAAAGAAAAACAAGAG
1 AGAAGAGAAAGAAAGACAAGAG
37264678 GTTGATGAAG
Statistics
Matches: 87, Mismatches: 17, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
28 87 1.00
ACGTcount: A:0.63, C:0.09, G:0.27, T:0.01
Consensus pattern (28 bp):
AGAAGAGAAAGAAAGACAAGAGAAGCAA
Found at i:37264602 original size:56 final size:56
Alignment explanation
Indices: 37264542--37264674 Score: 194
Period size: 56 Copynumber: 2.4 Consensus size: 56
37264532 ACATGAAAGG
* * * * *
37264542 AGAGAAAAGAAAGAAAGACCAGAGAAGCAAAGGAGAGAAAGAAACACAAGAGAAGC
1 AGAGAAGAGAAAGAAAAACAAAAGAAGCAAAGGAGAGAAAGAAACACAAGAGAAAC
* *
37264598 AGAGAAGTGAAAGAAAAACAAAAGAAGCAAAGGAGAGAAAGAAACGCAAGAGAAAC
1 AGAGAAGAGAAAGAAAAACAAAAGAAGCAAAGGAGAGAAAGAAACACAAGAGAAAC
*
37264654 AAAGAAGAGAAAGAAAAACAA
1 AGAGAAGAGAAAGAAAAACAA
37264675 GAGGTTGATG
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 68 1.00
ACGTcount: A:0.64, C:0.09, G:0.26, T:0.01
Consensus pattern (56 bp):
AGAGAAGAGAAAGAAAAACAAAAGAAGCAAAGGAGAGAAAGAAACACAAGAGAAAC
Found at i:37264667 original size:19 final size:19
Alignment explanation
Indices: 37264589--37264674 Score: 52
Period size: 19 Copynumber: 4.6 Consensus size: 19
37264579 AAAGAAACAC
* * *
37264589 AAGAGAAGCAGAGAAGTGA
1 AAGAGAAACAAAGAAGAGA
* *
37264608 AAGAAAAACAAAAGAAG-CA
1 AAGAGAAAC-AAAGAAGAGA
* * *
37264627 AAG-GAGAGAAAGAA-ACGC
1 AAGAGAAACAAAGAAGA-GA
37264645 AAGAGAAACAAAGAAGAGA
1 AAGAGAAACAAAGAAGAGA
*
37264664 AAGAAAAACAA
1 AAGAGAAACAA
37264675 GAGGTTGATG
Statistics
Matches: 49, Mismatches: 13, Indels: 10
0.68 0.18 0.14
Matches are distributed among these distances:
17 6 0.12
18 5 0.10
19 31 0.63
20 7 0.14
ACGTcount: A:0.65, C:0.08, G:0.26, T:0.01
Consensus pattern (19 bp):
AAGAGAAACAAAGAAGAGA
Done.