Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60343961
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 596159 characters in sequence are not A, C, G, or T
File 149 of 204
Found at i:45356231 original size:18 final size:18
Alignment explanation
Indices: 45356192--45356240 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
45356182 TAAGAACAAT
* *
45356192 AAAAATAAATAAACAACG
1 AAAAATAAATAAATAAAG
45356210 -AAAATAAATAAATAAAG
1 AAAAATAAATAAATAAAG
*
45356227 AAAAATAAACAAAT
1 AAAAATAAATAAAT
45356241 TAATTAAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
17 15 0.56
18 12 0.44
ACGTcount: A:0.76, C:0.06, G:0.04, T:0.14
Consensus pattern (18 bp):
AAAAATAAATAAATAAAG
Found at i:45360223 original size:99 final size:99
Alignment explanation
Indices: 45360073--45360277 Score: 401
Period size: 99 Copynumber: 2.1 Consensus size: 99
45360063 GTATTCGGGT
*
45360073 TTGGGCTTGGGTAATGTATTTTGGGTTTGGTTATTTAATTTCTGGTATGTAATTAGGTGGTGTAT
1 TTGGGCTTGGGTAATGTATTTTAGGTTTGGTTATTTAATTTCTGGTATGTAATTAGGTGGTGTAT
45360138 TGGGCTGACTAGGTTGAGTATTAGGAAATTTGGG
66 TGGGCTGACTAGGTTGAGTATTAGGAAATTTGGG
45360172 TTGGGCTTGGGTAATGTATTTTAGGTTTGGTTATTTAATTTCTGGTATGTAATTAGGTGGTGTAT
1 TTGGGCTTGGGTAATGTATTTTAGGTTTGGTTATTTAATTTCTGGTATGTAATTAGGTGGTGTAT
45360237 TGGGCTGACTAGGTTGAGTATTAGGAAATTTGGG
66 TGGGCTGACTAGGTTGAGTATTAGGAAATTTGGG
45360271 TTGGGCT
1 TTGGGCT
45360278 ATTTTAGGCC
Statistics
Matches: 105, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
99 105 1.00
ACGTcount: A:0.19, C:0.04, G:0.33, T:0.43
Consensus pattern (99 bp):
TTGGGCTTGGGTAATGTATTTTAGGTTTGGTTATTTAATTTCTGGTATGTAATTAGGTGGTGTAT
TGGGCTGACTAGGTTGAGTATTAGGAAATTTGGG
Found at i:45360788 original size:100 final size:100
Alignment explanation
Indices: 45360624--45361317 Score: 899
Period size: 100 Copynumber: 6.9 Consensus size: 100
45360614 AGATTCGTCA
* * *
45360624 TTGTAGCTTCAATCTTTTTAACTGCAATGTTGGGGAAGCAAGATTTGCCGTTGTGGCTTTAATCT
1 TTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCT
* * * * * *
45360689 ATTCTACTGCATCGCCTAGGATGTAAGATTAGCCG
66 GTTCCACTGCACCGCCTGGGAAGTAAGATTAGCTG
* * * * * *
45360724 TTGTAGATTCAATCTTTTTAATTGCAATGTCGGGGAAGCATGATTCGCCATTGTGGCTTCAATCT
1 TTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCT
* * *
45360789 GTTCCACTACACCACCTCGGAAGTAAGATTCA-CTG
66 GTTCCACTGCACCGCCTGGGAAGTAAGATT-AGCTG
* * *
45360824 TTGTAGCTTTAATATTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAGTCT
1 TTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCT
* *
45360889 GTTCCACCGCACCGTCTGGGAAGTAAGATTCA-CTG
66 GTTCCACTGCACCGCCTGGGAAGTAAGATT-AGCTG
* * *
45360924 TTGTAGCTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGATTAGCCATTGTGGCTTTAATCT
1 TTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCT
* * * *
45360989 GTTCCATTACACCGCCTGGAAAGTAAGATTCGCTG
66 GTTCCACTGCACCGCCTGGGAAGTAAGATTAGCTG
* **
45361024 TTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCGCTATTGTGGCTTTAATCT
1 TTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCT
* * * *
45361089 ATTCCACTGCATCGCCTGGGAAGTAAGATTCGTTG
66 GTTCCACTGCACCGCCTGGGAAGTAAGATTAGCTG
* * *
45361124 TTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAACAAGATTCACCGCTGTGGCTTTAATCT
1 TTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCT
* * * *
45361189 GTTCCACTACACCGCATGGGAAGTAAAATTCGCTG
66 GTTCCACTGCACCGCCTGGGAAGTAAGATTAGCTG
* * *
45361224 TTGTAGCTTTAATCTTTTTAACTACAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTCAATCT
1 TTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCT
* *
45361289 ATTCCACTGCACCGTCTGGG-AGATAAGAT
66 GTTCCACTGCACCGCCTGGGAAG-TAAGAT
45361318 CTGTAATTTT
Statistics
Matches: 519, Mismatches: 72, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
99 2 0.00
100 516 0.99
101 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (100 bp):
TTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCT
GTTCCACTGCACCGCCTGGGAAGTAAGATTAGCTG
Found at i:45361317 original size:50 final size:50
Alignment explanation
Indices: 45360624--45361317 Score: 401
Period size: 50 Copynumber: 13.9 Consensus size: 50
45360614 AGATTCGTCA
* * ** * * ** *
45360624 TTGTAGCTTCAATCTTTTTAACTGCAATGT-TGGGGAAGCAAGATTTGCCG
1 TTGTGGCTTTAATCTTTTCCACTGCAACGTCT-GGGAAGTAAGATTCACTG
* * * * * * *
45360674 TTGTGGCTTTAATCTATTCTACTGCATCGCCTAGGATGTAAGATT-AGCCG
1 TTGTGGCTTTAATCTTTTCCACTGCAACGTCTGGGAAGTAAGATTCA-CTG
* * * ** * * * * * * **
45360724 TTGTAGATTCAATCTTTTTAATTGCAATGTCGGGGAAGCATGATTCGCCA
1 TTGTGGCTTTAATCTTTTCCACTGCAACGTCTGGGAAGTAAGATTCACTG
* * * * ** *
45360774 TTGTGGCTTCAATCTGTTCCACTACACCACCTCGGAAGTAAGATTCACTG
1 TTGTGGCTTTAATCTTTTCCACTGCAACGTCTGGGAAGTAAGATTCACTG
* * ** * * * *
45360824 TTGTAGCTTTAATATTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCG
1 TTGTGGCTTTAATCTTTTCCACTGCAACGTCTGGGAAGTAAGATTCACTG
* * * *
45360874 TTGTGGCTTTAGTCTGTTCCACCGCACCGTCTGGGAAGTAAGATTCACTG
1 TTGTGGCTTTAATCTTTTCCACTGCAACGTCTGGGAAGTAAGATTCACTG
* ** * * **
45360924 TTGTAGCTTTAATCTTTTTAACTGCAATGTC-GAGGAAGCAAGATT-AGCCA
1 TTGTGGCTTTAATCTTTTCCACTGCAACGTCTG-GGAAGTAAGATTCA-CTG
* * * * * * *
45360974 TTGTGGCTTTAATCTGTTCCATTACACCGCCTGGAAAGTAAGATTCGCTG
1 TTGTGGCTTTAATCTTTTCCACTGCAACGTCTGGGAAGTAAGATTCACTG
* ** * * * *
45361024 TTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCGCTA
1 TTGTGGCTTTAATCTTTTCCACTGCAACGTCTGGGAAGTAAGATTCACTG
* * * **
45361074 TTGTGGCTTTAATCTATTCCACTGCATCGCCTGGGAAGTAAGATTCGTTG
1 TTGTGGCTTTAATCTTTTCCACTGCAACGTCTGGGAAGTAAGATTCACTG
* ** * * ** *
45361124 TTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAACAAGATTCACCG
1 TTGTGGCTTTAATCTTTTCCACTGCAACGTCTGGGAAGTAAGATTCACTG
* * * * * *
45361174 CTGTGGCTTTAATCTGTTCCACTACACCG-CATGGGAAGTAAAATTCGCTG
1 TTGTGGCTTTAATCTTTTCCACTGCAACGTC-TGGGAAGTAAGATTCACTG
* ** * * * * *
45361224 TTGTAGCTTTAATCTTTTTAACTACAATGTCGGGGAAGCAAGATTCACCG
1 TTGTGGCTTTAATCTTTTCCACTGCAACGTCTGGGAAGTAAGATTCACTG
* * *
45361274 TTGTGGCTTCAATCTATTCCACTGCACCGTCTGGG-AGATAAGAT
1 TTGTGGCTTTAATCTTTTCCACTGCAACGTCTGGGAAG-TAAGAT
45361318 CTGTAATTTT
Statistics
Matches: 464, Mismatches: 170, Indels: 20
0.71 0.26 0.03
Matches are distributed among these distances:
49 5 0.01
50 456 0.98
51 3 0.01
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (50 bp):
TTGTGGCTTTAATCTTTTCCACTGCAACGTCTGGGAAGTAAGATTCACTG
Found at i:45361551 original size:131 final size:131
Alignment explanation
Indices: 45361306--45361554 Score: 299
Period size: 131 Copynumber: 1.9 Consensus size: 131
45361296 TGCACCGTCT
* * * ***
45361306 GGGAGATAAGATCTGTAATTTTTAACCTATTCCACTGCTGACCAGGGAGATAGGACTAGTGGCTT
1 GGGAGATAAGATCTGTAATTTTCAACCTATTCCACTACTGACCAGGGAAATAGGACTACAAGCTT
* * *
45361371 AAATCTACTTCCCTACTCCTAGGGAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTT
66 AAATCTACTTCCCTACTCCCAGGGAAGATAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTT
45361436 A
131 A
* *
45361437 GGGAGATAAGATCTGTGATTTTCAACCTATTCCACTACTGACCAGGGAAATAGGACTCACAATCT
1 GGGAGATAAGATCTGTAATTTTCAACCTATTCCACTACTGACCAGGGAAATAGGACT-ACAAGCT
* * **
45361502 TCAATCTA-TTCCACTGCTGCCCAGGG-AGAT-AGAATT-GGTATCTTCGATCTGCT
65 TAAATCTACTTCC-CTACT-CCCAGGGAAGATAAG-ATTCGCCATCTTCGATCTGCT
45361555 TCGCTGTCTA
Statistics
Matches: 99, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
131 72 0.73
132 21 0.21
133 6 0.06
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (131 bp):
GGGAGATAAGATCTGTAATTTTCAACCTATTCCACTACTGACCAGGGAAATAGGACTACAAGCTT
AAATCTACTTCCCTACTCCCAGGGAAGATAAGATTCGCCATCTTCGATCTGCTCCACTACTGCTT
A
Found at i:45361650 original size:88 final size:88
Alignment explanation
Indices: 45361536--45361735 Score: 255
Period size: 88 Copynumber: 2.3 Consensus size: 88
45361526 GGAGATAGAA
* * * *
45361536 TTGGTATCTTCGATCTGCTTCGCTGTC--TATGAAGGAATGCAAGATCTGCTATCTTT-AACCTA
1 TTGGTGTCTTCGATCTGCTTCACTGTCAGTAT--AGGAAGGCAAGATCTACTAT-TTTCAACCTA
* * *
45361598 CTCTGCTGCAACCCAGGGAGGCAAGG
63 CTCTACTGCAAACCAGAGAGGCAAGG
45361624 TTGGTGTCTTCGATCTGCTTCACTGTCAGTATAGGAAGGCAAGATCTACTATTTTCAACCTACTC
1 TTGGTGTCTTCGATCTGCTTCACTGTCAGTATAGGAAGGCAAGATCTACTATTTTCAACCTACTC
45361689 TACTGCAAACCAGAGAGGCAAGG
66 TACTGCAAACCAGAGAGGCAAGG
* *
45361712 CTGG-GATCTTCGATCTGCTCCACT
1 TTGGTG-TCTTCGATCTGCTTCACT
45361736 ACTGCTTAGG
Statistics
Matches: 99, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
87 4 0.04
88 92 0.93
90 3 0.03
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.29
Consensus pattern (88 bp):
TTGGTGTCTTCGATCTGCTTCACTGTCAGTATAGGAAGGCAAGATCTACTATTTTCAACCTACTC
TACTGCAAACCAGAGAGGCAAGG
Found at i:45361819 original size:45 final size:45
Alignment explanation
Indices: 45361764--45361882 Score: 134
Period size: 44 Copynumber: 2.7 Consensus size: 45
45361754 ATCTGTAATT
* * ** * *
45361764 TTCAATATATTCCATTGCTGCCCAGGGAGTTTAGAATTCACCATC
1 TTCAACATATTCCACTGCTGCCCAGGGAGAATAGAACTCACAATC
* *
45361809 TTCAACATATTCCACTGCTGACCAGGGA-AATAGGACTCACAATC
1 TTCAACATATTCCACTGCTGCCCAGGGAGAATAGAACTCACAATC
*
45361853 TTCAATC-TATTCCACTGCTGCCTAGGGAGA
1 TTCAA-CATATTCCACTGCTGCCCAGGGAGA
45361883 TAAAATTGGT
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 35 0.56
45 27 0.44
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.29
Consensus pattern (45 bp):
TTCAACATATTCCACTGCTGCCCAGGGAGAATAGAACTCACAATC
Found at i:45363988 original size:26 final size:25
Alignment explanation
Indices: 45363952--45364036 Score: 74
Period size: 26 Copynumber: 3.5 Consensus size: 25
45363942 GAATGTAAAT
45363952 TTTTTA-TAATTATTTTAAAATTAA
1 TTTTTAGTAATTATTTTAAAATTAA
*
45363976 TTTGTTAGT-A--A-TTTAATATT-A
1 TTT-TTAGTAATTATTTTAAAATTAA
*
45363997 TGTTATATGTAATTATTTTAAAATTAA
1 T-TTTTA-GTAATTATTTTAAAATTAA
45364024 TTTATTAGTAATT
1 TTT-TTAGTAATT
45364037 TAGGATTATC
Statistics
Matches: 47, Mismatches: 4, Indels: 18
0.68 0.06 0.26
Matches are distributed among these distances:
21 4 0.09
22 12 0.26
23 2 0.04
24 3 0.06
25 5 0.11
26 17 0.36
27 4 0.09
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (25 bp):
TTTTTAGTAATTATTTTAAAATTAA
Found at i:45364045 original size:48 final size:48
Alignment explanation
Indices: 45363958--45364051 Score: 152
Period size: 48 Copynumber: 2.0 Consensus size: 48
45363948 AAATTTTTTA
* * *
45363958 TAATTATTTTAAAATTAATTTGTTAGTAATTTAATATTATGTTATATG
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAAGATTATCTTATATG
*
45364006 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATCTTATA
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAAGATTATCTTATA
45364052 AATTATTGTG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.38, C:0.01, G:0.07, T:0.53
Consensus pattern (48 bp):
TAATTATTTTAAAATTAATTTATTAGTAATTTAAGATTATCTTATATG
Found at i:45364303 original size:17 final size:18
Alignment explanation
Indices: 45364261--45364305 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
45364251 AGACGCTGCC
45364261 AATAAAATAATATTTAAAA
1 AATAAAA-AATATTTAAAA
*
45364280 AATAAAAAATA-TTATAA
1 AATAAAAAATATTTAAAA
*
45364297 TATAAAAAA
1 AATAAAAAA
45364306 AGGAGGTTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 13 0.54
18 4 0.17
19 7 0.29
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (18 bp):
AATAAAAAATATTTAAAA
Found at i:45381958 original size:21 final size:20
Alignment explanation
Indices: 45381922--45381979 Score: 68
Period size: 21 Copynumber: 3.0 Consensus size: 20
45381912 TTAACTTTAC
45381922 AAGTC-AAAAA-ATATAAAA
1 AAGTCTAAAAATATATAAAA
45381940 AAGTCTAAAGAATATATAAAA
1 AAGTCTAAA-AATATATAAAA
* *
45381961 AATTTTAAAAATATA-AAAA
1 AAGTCTAAAAATATATAAAA
45381980 CCCCTAAATC
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
18 5 0.14
19 7 0.20
20 8 0.23
21 15 0.43
ACGTcount: A:0.67, C:0.03, G:0.05, T:0.24
Consensus pattern (20 bp):
AAGTCTAAAAATATATAAAA
Found at i:45385211 original size:12 final size:13
Alignment explanation
Indices: 45385193--45385230 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
45385183 ATCGTTTTCT
45385193 TTTTTTCTTTTTG
1 TTTTTTCTTTTTG
*
45385206 -TTTTTCTGTTTG
1 TTTTTTCTTTTTG
45385218 TTGTTTTCTTTTT
1 TT-TTTTCTTTTT
45385231 ATTCTTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
12 11 0.52
13 1 0.05
14 9 0.43
ACGTcount: A:0.00, C:0.08, G:0.11, T:0.82
Consensus pattern (13 bp):
TTTTTTCTTTTTG
Found at i:45386376 original size:25 final size:23
Alignment explanation
Indices: 45386320--45386376 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 23
45386310 ACATATTACT
45386320 TATTTTTAAAATTTTTTCATACA
1 TATTTTTAAAATTTTTTCATACA
* *
45386343 TAGTATTTTAAAATTGTTTTGTATATA
1 TA-T-TTTTAAAATT-TTTT-CATACA
45386370 TATTTTT
1 TATTTTT
45386377 TTAAATATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
23 2 0.07
24 1 0.04
25 14 0.50
26 5 0.18
27 6 0.21
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.60
Consensus pattern (23 bp):
TATTTTTAAAATTTTTTCATACA
Found at i:45386378 original size:27 final size:25
Alignment explanation
Indices: 45386322--45386386 Score: 67
Period size: 27 Copynumber: 2.5 Consensus size: 25
45386312 ATATTACTTA
45386322 TTTTTAAAATTTTTTCATACATAGT
1 TTTTTAAAATTTTTTCATACATAGT
* * * *
45386347 ATTTTAAAATTGTTTTGTATATATATT
1 TTTTTAAAATT-TTTT-CATACATAGT
45386374 TTTTTAAATATTT
1 TTTTTAAA-ATTT
45386387 CTTTTTTCAC
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
25 10 0.31
26 4 0.12
27 15 0.47
28 3 0.09
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.60
Consensus pattern (25 bp):
TTTTTAAAATTTTTTCATACATAGT
Found at i:45391344 original size:17 final size:17
Alignment explanation
Indices: 45391294--45391345 Score: 62
Period size: 12 Copynumber: 3.4 Consensus size: 17
45391284 TTATCTATTC
45391294 AGTTTTT-ATTCAATTT
1 AGTTTTTCATTCAATTT
45391310 AGTTTTTCATT--A---
1 AGTTTTTCATTCAATTT
45391322 AGTTTTTCATTCAATTT
1 AGTTTTTCATTCAATTT
45391339 AGTTTTT
1 AGTTTTT
45391346 GTTTTATTTC
Statistics
Matches: 30, Mismatches: 0, Indels: 11
0.73 0.00 0.27
Matches are distributed among these distances:
12 11 0.37
14 1 0.03
15 1 0.03
16 7 0.23
17 10 0.33
ACGTcount: A:0.23, C:0.08, G:0.08, T:0.62
Consensus pattern (17 bp):
AGTTTTTCATTCAATTT
Found at i:45394101 original size:32 final size:33
Alignment explanation
Indices: 45393944--45394103 Score: 121
Period size: 37 Copynumber: 4.7 Consensus size: 33
45393934 TTTTAATAGT
*
45393944 TTAATATTAAATTAATTTAATACTTATCTTA-A
1 TTAATATTAAATTAATTTAATATTTATCTTAGA
* * * **
45393976 -TAATATTTAA-TAATTTAATATTAAAGTGATTATC
1 TTAATATTAAATTAATTTAATATT-TA-T-CTTAGA
* *
45394010 TTAATATTAAATTTAATTTAATGTTTATCTACAAGA
1 TTAATATTAAA-TTAATTTAATATTTATCT--TAGA
*
45394046 TTTAATATTAAATTTAATCTAATATTTATCTTA-A
1 -TTAATATTAAA-TTAATTTAATATTTATCTTAGA
* *
45394080 TAAATATTATATTAATTTAATATT
1 TTAATATTAAATTAATTTAATATT
45394104 AAAGTGATTA
Statistics
Matches: 100, Mismatches: 18, Indels: 20
0.72 0.13 0.14
Matches are distributed among these distances:
30 11 0.11
31 10 0.10
32 13 0.13
33 12 0.12
34 2 0.02
35 11 0.11
36 2 0.02
37 39 0.39
ACGTcount: A:0.43, C:0.04, G:0.03, T:0.50
Consensus pattern (33 bp):
TTAATATTAAATTAATTTAATATTTATCTTAGA
Found at i:45394718 original size:30 final size:30
Alignment explanation
Indices: 45394682--45394739 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
45394672 TTGGGTTTTC
*
45394682 CCACACGGGCTGGACATACGACCATGTGAA
1 CCACACGGGCTGGACACACGACCATGTGAA
*
45394712 CCACACGGGCTGGACACACGGCCATGTG
1 CCACACGGGCTGGACACACGACCATGTG
45394740 CCAGACCGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.26, C:0.33, G:0.29, T:0.12
Consensus pattern (30 bp):
CCACACGGGCTGGACACACGACCATGTGAA
Found at i:45395786 original size:5 final size:5
Alignment explanation
Indices: 45395770--45395811 Score: 61
Period size: 5 Copynumber: 8.8 Consensus size: 5
45395760 TTCCAACACA
*
45395770 CATAT CAAAT CATAT CATAT CATAT CATAT CAT-T -ATAT CATA
1 CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATA
45395812 AACAAATGGT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
3 2 0.06
4 2 0.06
5 29 0.88
ACGTcount: A:0.43, C:0.19, G:0.00, T:0.38
Consensus pattern (5 bp):
CATAT
Found at i:45397342 original size:42 final size:42
Alignment explanation
Indices: 45397241--45397586 Score: 338
Period size: 42 Copynumber: 8.1 Consensus size: 42
45397231 AAATAAACAT
* * * *
45397241 CGCTATAGATCATGACCTTTAGCGACACTTTTCCCACAAAACAC
1 CGCTATAGATCAGGACCTTTAGCGACGCTTTT-ACAC-AAACGC
* *
45397285 CGCTATAGATCAGGACCTTTAGCGGCGCTTTTACACAAACGT
1 CGCTATAGATCAGGACCTTTAGCGACGCTTTTACACAAACGC
*
45397327 CGCTATAGATCAGGACCTTTAGC-AGCGCTTTTACACAAACGT
1 CGCTATAGATCAGGACCTTTAGCGA-CGCTTTTACACAAACGC
* *
45397369 CGCTATAGATCAGAACCTTTAGCGACTCTTTTACACAAACGC
1 CGCTATAGATCAGGACCTTTAGCGACGCTTTTACACAAACGC
* * * **
45397411 CACTATAGATCAAGACCTTTAGCGGCGCTTATCCCACAAACGC
1 CGCTATAGATCAGGACCTTTAGCGACGCTT-TTACACAAACGC
* * * * *
45397454 CGCTATAGATCATGACTTTTAGCGAC-ATTTTCCCCACAAACGT
1 CGCTATAGATCAGGACCTTTAGCGACGCTTTT--ACACAAACGC
* * * * *
45397497 CGTTATAGATCATGACTTTTAGCAACGCTTTTTTCACAAACGC
1 CGCTATAGATCAGGACCTTTAGCGACGC-TTTTACACAAACGC
** * * *
45397540 CATTATAGAACA-GACCTTTAGCGACACTTTTCACACAAATGC
1 CGCTATAGATCAGGACCTTTAGCGACGCTTTT-ACACAAACGC
45397582 CGCTA
1 CGCTA
45397587 AAAACATATC
Statistics
Matches: 256, Mismatches: 38, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
41 5 0.02
42 131 0.51
43 87 0.34
44 29 0.11
45 4 0.02
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (42 bp):
CGCTATAGATCAGGACCTTTAGCGACGCTTTTACACAAACGC
Found at i:45397492 original size:128 final size:126
Alignment explanation
Indices: 45397235--45397586 Score: 388
Period size: 128 Copynumber: 2.8 Consensus size: 126
45397225 TTTTAGAAAT
* * * * *
45397235 AAACATCGCTATAGATCATGACCTTTAGCGACACTTTTCCCACAAAACACCGCTATAGATCAGGA
1 AAACGTCGCTATAGATCATGACCTTTAGCGACACTTTT-ACAC-AAACGCCACTATAGATCAAGA
* * *
45397300 CCTTTAGCGGCGCTTTTACACAAACGTCGCTATAGATCAGGACCTTTAGCAGCGCTTTTACAC
64 CCTTTAGCGGCGCTTTCACACAAACGCCGCTATAGATCAGGACCTTTAGCAGCGATTTTACAC
*
45397363 AAACGTCGCTATAGATCA-GAACCTTTAGCGACTCTTTTACACAAACGCCACTATAGATCAAGAC
1 AAACGTCGCTATAGATCATG-ACCTTTAGCGACACTTTTACACAAACGCCACTATAGATCAAGAC
* * * *
45397427 CTTTAGCGGCGCTTATCCCACAAACGCCGCTATAGATCATGACTTTTAGC-GAC-ATTTTCCCCA
65 CTTTAGCGGCGCTT-TCACACAAACGCCGCTATAGATCAGGACCTTTAGCAG-CGATTTT--ACA
45397490 C
126 C
* * * * * * *
45397491 AAACGTCGTTATAGATCATGACTTTTAGCAACGCTTTTTTCACAAACGCCATTATAGAAC-AGAC
1 AAACGTCGCTATAGATCATGACCTTTAGCGACAC-TTTTACACAAACGCCACTATAGATCAAGAC
* * *
45397555 CTTTAGCGACACTTTTCACACAAATGCCGCTA
65 CTTTAGCGGCGC-TTTCACACAAACGCCGCTA
45397587 AAAACATATC
Statistics
Matches: 192, Mismatches: 24, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
126 38 0.20
127 35 0.18
128 94 0.49
129 25 0.13
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (126 bp):
AAACGTCGCTATAGATCATGACCTTTAGCGACACTTTTACACAAACGCCACTATAGATCAAGACC
TTTAGCGGCGCTTTCACACAAACGCCGCTATAGATCAGGACCTTTAGCAGCGATTTTACAC
Found at i:45397528 original size:170 final size:171
Alignment explanation
Indices: 45397243--45397578 Score: 437
Period size: 170 Copynumber: 2.0 Consensus size: 171
45397233 ATAAACATCG
* *
45397243 CTATAGATCATGACCTTTAGCGACACTTTTCCCACAAAACACCGCTATAGATCAGGACCTTTAGC
1 CTATAGATCAAGACCTTTAGCGACACTTATCCCACAAAACACCGCTATAGATCAGGACCTTTAGC
* * * * *
45397308 GGCGCTTTTACACAAACGTCGCTATAGATCAGGACCTTTAGCAGCGC-TTTTACACAAACGTCGC
66 GACGATTTTACACAAACGTCGCTATAGATCAGGACCTTTAGCAACGCTTTTTACACAAACGCCAC
* *
45397372 TATAGATCAGAACCTTTAGCGACTCTTTT-ACACAAACGCCA
131 TATAGAACAG-ACCTTTAGCGACACTTTTCACACAAACGCCA
* * * * *
45397413 CTATAGATCAAGACCTTTAGCGGCGCTTATCCCAC-AAACGCCGCTATAGATCATGACTTTTAGC
1 CTATAGATCAAGACCTTTAGCGACACTTATCCCACAAAACACCGCTATAGATCAGGACCTTTAGC
* * * * *
45397477 GAC-ATTTTCCCCACAAACGTCGTTATAGATCATGACTTTTAGCAACGCTTTTTTCACAAACGCC
66 GACGATTTT--ACACAAACGTCGCTATAGATCAGGACCTTTAGCAACGCTTTTTACACAAACGCC
*
45397541 ATTATAGAACAGACCTTTAGCGACACTTTTCACACAAA
129 ACTATAGAACAGACCTTTAGCGACACTTTTCACACAAA
45397579 TGCCGCTAAA
Statistics
Matches: 142, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
168 4 0.03
169 28 0.20
170 81 0.57
171 29 0.20
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (171 bp):
CTATAGATCAAGACCTTTAGCGACACTTATCCCACAAAACACCGCTATAGATCAGGACCTTTAGC
GACGATTTTACACAAACGTCGCTATAGATCAGGACCTTTAGCAACGCTTTTTACACAAACGCCAC
TATAGAACAGACCTTTAGCGACACTTTTCACACAAACGCCA
Found at i:45397721 original size:35 final size:35
Alignment explanation
Indices: 45397682--45397754 Score: 80
Period size: 35 Copynumber: 2.1 Consensus size: 35
45397672 TTTCTACGAA
*
45397682 AATTTTAACTTTA-AAACTAAATATAA-AAATTAAT
1 AATTTTAAATTTAGAAACTAAA-ATAATAAATTAAT
**
45397716 GAA-TTTAAATTTAGAATTTAAAATAATAAATTAAT
1 -AATTTTAAATTTAGAAACTAAAATAATAAATTAAT
45397751 AATT
1 AATT
45397755 GTACAAATGT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
34 15 0.47
35 17 0.53
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.40
Consensus pattern (35 bp):
AATTTTAAATTTAGAAACTAAAATAATAAATTAAT
Found at i:45397723 original size:34 final size:34
Alignment explanation
Indices: 45397685--45397754 Score: 81
Period size: 34 Copynumber: 2.1 Consensus size: 34
45397675 CTACGAAAAT
*
45397685 TTTAACTTTA-AAACTAAATATAA-AAATTAATGAA
1 TTTAAATTTAGAAACTAAA-ATAATAAATTAAT-AA
**
45397719 TTTAAATTTAGAATTTAAAATAATAAATTAATAA
1 TTTAAATTTAGAAACTAAAATAATAAATTAATAA
45397753 TT
1 TT
45397755 GTACAAATGT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
34 17 0.55
35 14 0.45
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (34 bp):
TTTAAATTTAGAAACTAAAATAATAAATTAATAA
Found at i:45399689 original size:122 final size:122
Alignment explanation
Indices: 45399472--45399715 Score: 391
Period size: 122 Copynumber: 2.0 Consensus size: 122
45399462 ATGCATGCTA
* * *
45399472 TATGAGGTGCCACTTGATACTGTCATAATTTCTGAGCTTAGATTCCCAGTTTTCTAGTCAATGCT
1 TATGAGGTGCCACTTGATACTGTCACAATTTCTGAGCTTAGATTCCCAGTTTTCAAGTCAATACT
*
45399537 GAATGCAGAAAAGTTCAAAGTGTATATAACATTGAATCCTAATGTTGCATGTCAGGG
66 GAATGCAGAAAAGTTCAAAGTGTATATAACATAGAATCCTAATGTTGCATGTCAGGG
*
45399594 TATGAGGTGCCACTTGATCCAT-TCACAATTTCTGAGCTTAGATTCCCAGTTTTCAAGTCAATAC
1 TATGAGGTGCCACTTGATAC-TGTCACAATTTCTGAGCTTAGATTCCCAGTTTTCAAGTCAATAC
* * * *
45399658 TGAATGTAGAAAGGTTCAAAGTGTATATAACATAGAATCTTAATGTTGTATGTCAGGG
65 TGAATGCAGAAAAGTTCAAAGTGTATATAACATAGAATCCTAATGTTGCATGTCAGGG
45399716 AAAGCAGTTG
Statistics
Matches: 112, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
122 111 0.99
123 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (122 bp):
TATGAGGTGCCACTTGATACTGTCACAATTTCTGAGCTTAGATTCCCAGTTTTCAAGTCAATACT
GAATGCAGAAAAGTTCAAAGTGTATATAACATAGAATCCTAATGTTGCATGTCAGGG
Found at i:45400877 original size:253 final size:254
Alignment explanation
Indices: 45400398--45400972 Score: 931
Period size: 253 Copynumber: 2.3 Consensus size: 254
45400388 GGAGAACCTG
* * *
45400398 ATTTATGTTAAAAACGGCGTCGTTTTTCTATTTTAACATTTGTGGCTCTTACAAAAAAATGCCAC
1 ATTTATGTTAAAAACGGCGTCG-TTTTCTATTTTAACATTTGCGGCGCTTACAAAAAAACGCCAC
*
45400463 TAGTTTCACAACTTTTGCGGCGTTTTGATAAAAAAACGCCACTAACATTTAACTCGTCAACGAAG
65 TAGTTTCACAACTTTTGCGGCGTTTTGATAAAAAAACGCCACTAACATTTAACTCATCAACGAAG
*
45400528 CGGTGCCGTTTTGTTTAATTTTTAATATGTTATTTGCGGCGTTTTAAGAACAAACACCGCTAGTA
130 CGGTGCCGTTTTGTTTAATTTTTAATATGTTATTTCCGGCGTTTTAAGAACAAACACCGCTAGTA
45400593 TTTAGATTTTGTGGCGTTTTACATCGAAACGCCGCTACTGATTAACTTTCTATTAATATT
195 TTTAGATTTTGTGGCGTTTTACATCGAAACGCCGCTACTGATTAACTTTCTATTAATATT
* * *
45400653 ATTTATGCTAAAAACGGCATCGTTTTCTATTTCAACATTTGCGGCGCTTACAAAAAAACGCCACT
1 ATTTATGTTAAAAACGGCGTCGTTTTCTATTTTAACATTTGCGGCGCTTACAAAAAAACGCCACT
* *
45400718 AGTTTCACAACTTTTGCGGCGTTTTGAT-AAGAAACGCCACTAACATTTAACTCATCAATGAAGC
66 AGTTTCACAACTTTTGCGGCGTTTTGATAAAAAAACGCCACTAACATTTAACTCATCAACGAAGC
* * *
45400782 GGTGTCGTTTTGTTTAATTTTTAATATGTTTTTTCCGGCGTTTTCCA-AACAAACACCGCTAGTA
131 GGTGCCGTTTTGTTTAATTTTTAATATGTTATTTCCGGCGTTTT-AAGAACAAACACCGCTAGTA
* *
45400846 TTTAGATTTTGTGGCGTTTTACATGGAAACGCCGCTACTGATTAACTTTTTATTAATATT
195 TTTAGATTTTGTGGCGTTTTACATCGAAACGCCGCTACTGATTAACTTTCTATTAATATT
* * *
45400906 ATTTATGTTTAAAACGGCGTCATTTTCTATTTTAACATTTGCGGCGTTTTGAC-AAAAAACGCCA
1 ATTTATGTTAAAAACGGCGTCGTTTTCTATTTTAACATTTGCGGCG-CTT-ACAAAAAAACGCCA
45400970 CTA
64 CTA
45400973 ATATTTAACT
Statistics
Matches: 296, Mismatches: 21, Indels: 7
0.91 0.06 0.02
Matches are distributed among these distances:
253 190 0.64
254 84 0.28
255 22 0.07
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (254 bp):
ATTTATGTTAAAAACGGCGTCGTTTTCTATTTTAACATTTGCGGCGCTTACAAAAAAACGCCACT
AGTTTCACAACTTTTGCGGCGTTTTGATAAAAAAACGCCACTAACATTTAACTCATCAACGAAGC
GGTGCCGTTTTGTTTAATTTTTAATATGTTATTTCCGGCGTTTTAAGAACAAACACCGCTAGTAT
TTAGATTTTGTGGCGTTTTACATCGAAACGCCGCTACTGATTAACTTTCTATTAATATT
Found at i:45401006 original size:213 final size:214
Alignment explanation
Indices: 45400730--45401125 Score: 668
Period size: 213 Copynumber: 1.9 Consensus size: 214
45400720 TTTCACAACT
* * *
45400730 TTTGCGGCGTTTTGATAAGAAACGCCACTAACATTTAACTCATCAATGAAGCGGTGTCGTTTTGT
1 TTTGCGGCGTTTTGACAAAAAACGCCACTAACATTTAACTCATCAATGAAGCGGTGCCGTTTTGT
* *
45400795 TTAATTTTTAATATGTTTTTTCCGGCGTTTTCCAAACAAACACCGCTAGTATTTAGATTTTGTGG
66 TTAATTTTTAATATGTTTTTTCCGGCGTTTTCCAAACAAACACCGCTAATATTTAGATTTTGTGA
*
45400860 CG-TTTTACATGGAAACGCCGCTACTGATTAACTTTTTATTAATATTATTTATGTTTAAAACGGC
131 CGTTTTTACATGGAAACGCCGCTACTAATTAACTTTTTATTAATATTATTTATGTTTAAAACGGC
45400924 GTCATTTTCTATTTTAACA
196 GTCATTTTCTATTTTAACA
* *
45400943 TTTGCGGCGTTTTGACAAAAAACGCCACTAATATTTAACTCGTCAATGAAGCGGTGCCGTTTTGT
1 TTTGCGGCGTTTTGACAAAAAACGCCACTAACATTTAACTCATCAATGAAGCGGTGCCGTTTTGT
* * **
45401008 TTAATTTTTTATATGTTTTTTGCGGCGTTTTCTGAACAAACACCGCTAATATTTAGATTTTGTGA
66 TTAATTTTTAATATGTTTTTTCCGGCGTTTTCCAAACAAACACCGCTAATATTTAGATTTTGTGA
*
45401073 CGTTTTTACATGGAAACGTCGCTACTAATTAACTTTTTATTAATATTATTTAT
131 CGTTTTTACATGGAAACGCCGCTACTAATTAACTTTTTATTAATATTATTTAT
45401126 AAATTTTCAA
Statistics
Matches: 169, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
213 121 0.72
214 48 0.28
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (214 bp):
TTTGCGGCGTTTTGACAAAAAACGCCACTAACATTTAACTCATCAATGAAGCGGTGCCGTTTTGT
TTAATTTTTAATATGTTTTTTCCGGCGTTTTCCAAACAAACACCGCTAATATTTAGATTTTGTGA
CGTTTTTACATGGAAACGCCGCTACTAATTAACTTTTTATTAATATTATTTATGTTTAAAACGGC
GTCATTTTCTATTTTAACA
Found at i:45401233 original size:12 final size:13
Alignment explanation
Indices: 45401205--45401237 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
45401195 TTAAAATGAC
*
45401205 ATTATTAATATAT
1 ATTATTTATATAT
45401218 ATTATTTATA-AT
1 ATTATTTATATAT
45401230 ATTATTTA
1 ATTATTTA
45401238 AAAATTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 10 0.53
13 9 0.47
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (13 bp):
ATTATTTATATAT
Found at i:45401953 original size:161 final size:158
Alignment explanation
Indices: 45401770--45402072 Score: 527
Period size: 161 Copynumber: 1.9 Consensus size: 158
45401760 CCCTAAATCT
45401770 TAAACCCCAAACCAAAAACACTAAACCTACATCATAAACCCTAAACTCAAAACTCTAATCCCAAA
1 TAAACCCCAAACCAAAAACACTAAACCTACATCATAAACCCTAAACTCAAAACTCTAATCCCAAA
*
45401835 ATAATAAACATTATATAATGATTAATCCTAAAACCCTAAACCATATACGATAAACTTTAAATTAT
66 ATAATAAACATTATATAATG---AACCCTAAAACCCTAAACCATATACGATAAACTTTAAATTAT
45401900 AATAATCAC-TAAACCTTAATCACCAAACTCC
128 AATAA-CACATAAACCTTAATCACCAAACTCC
* *
45401931 TAAACCCTAAACCCAAAACACTAAACCTACATCATAAACCCTAAACTCAAAACTCTAATCCCAAA
1 TAAACCCCAAACCAAAAACACTAAACCTACATCATAAACCCTAAACTCAAAACTCTAATCCCAAA
*
45401996 ATAATAAACATTATATAATGAACCCTAAAACCCTAAACCATATATGATAAACTTTAAATTATAAT
66 ATAATAAACATTATATAATGAACCCTAAAACCCTAAACCATATACGATAAACTTTAAATTATAAT
45402061 AACACATAAACC
131 AACACATAAACC
45402073 CTAAAATTAT
Statistics
Matches: 137, Mismatches: 4, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
157 3 0.02
158 51 0.37
161 83 0.61
ACGTcount: A:0.50, C:0.26, G:0.01, T:0.23
Consensus pattern (158 bp):
TAAACCCCAAACCAAAAACACTAAACCTACATCATAAACCCTAAACTCAAAACTCTAATCCCAAA
ATAATAAACATTATATAATGAACCCTAAAACCCTAAACCATATACGATAAACTTTAAATTATAAT
AACACATAAACCTTAATCACCAAACTCC
Found at i:45402251 original size:41 final size:41
Alignment explanation
Indices: 45402206--45402429 Score: 290
Period size: 41 Copynumber: 5.5 Consensus size: 41
45402196 GTGATTTCTC
45402206 AAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCCT
1 AAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCCT
* * * *
45402247 AAAAACGTCACTAAAGCCCTGAGCATTAGTGGCGC-TTACT
1 AAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCCT
* * * *
45402287 CAAAAACGCCGCTAAATCCCTGAGCATTAGCAGTGC-TTACT
1 -AAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCCT
* * *
45402328 CAAAAACACCGCTAAAGCCTTGAGAATTAGCGGCGCTTTCCT
1 -AAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCCT
* *
45402370 TAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTT
1 AAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCCT
*
45402411 AAAAACGCTGCTAAAGCCC
1 AAAAACGCCGCTAAAGCCC
45402430 CGAAAGCTCA
Statistics
Matches: 157, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
40 4 0.03
41 149 0.95
42 4 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (41 bp):
AAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCCT
Found at i:45402424 original size:123 final size:123
Alignment explanation
Indices: 45402203--45402425 Score: 356
Period size: 123 Copynumber: 1.8 Consensus size: 123
45402193 GCGGTGATTT
* * *
45402203 CTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCCTAAAAACGTCACTAAAGCCCTG
1 CTCAAAAACACCGCTAAAGCCCTGAGAATTAGCGGCGCTTTCCTAAAAACGCCACTAAAGCCCTG
*
45402268 AGCATTAGTGGCGCTTACTCAAAAACGCCGCTAAATCCCTGAGCATTAGCAGTGCTTA
66 AGCATTAGCGGCGCTTACTCAAAAACGCCGCTAAATCCCTGAGCATTAGCAGTGCTTA
* * *
45402326 CTCAAAAACACCGCTAAAGCCTTGAGAATTAGCGGCGCTTTCCTTAAAACGCCGCTAAAGCCCTG
1 CTCAAAAACACCGCTAAAGCCCTGAGAATTAGCGGCGCTTTCCTAAAAACGCCACTAAAGCCCTG
* * *
45402391 AGCATTAGCGGCGCTTTCTTAAAAACGCTGCTAAA
66 AGCATTAGCGGCGCTTACTCAAAAACGCCGCTAAA
45402426 GCCCCGAAAG
Statistics
Matches: 90, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
123 90 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (123 bp):
CTCAAAAACACCGCTAAAGCCCTGAGAATTAGCGGCGCTTTCCTAAAAACGCCACTAAAGCCCTG
AGCATTAGCGGCGCTTACTCAAAAACGCCGCTAAATCCCTGAGCATTAGCAGTGCTTA
Found at i:45404977 original size:8 final size:8
Alignment explanation
Indices: 45404964--45405001 Score: 62
Period size: 8 Copynumber: 5.0 Consensus size: 8
45404954 AGAACTGGTA
45404964 TAGGGTTT
1 TAGGGTTT
45404972 TAGGGTTT
1 TAGGGTTT
45404980 TAGGG-TT
1 TAGGGTTT
45404987 TAGGG-TT
1 TAGGGTTT
45404994 TAGGGTTT
1 TAGGGTTT
45405002 AAAATATAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
7 14 0.48
8 15 0.52
ACGTcount: A:0.13, C:0.00, G:0.39, T:0.47
Consensus pattern (8 bp):
TAGGGTTT
Found at i:45404990 original size:7 final size:7
Alignment explanation
Indices: 45404964--45405002 Score: 60
Period size: 7 Copynumber: 5.3 Consensus size: 7
45404954 AGAACTGGTA
45404964 TAGGGTTT
1 TAGGG-TT
45404972 TAGGGTTT
1 TAGGG-TT
45404980 TAGGGTT
1 TAGGGTT
45404987 TAGGGTT
1 TAGGGTT
45404994 TAGGGTT
1 TAGGGTT
45405001 TA
1 TA
45405003 AAATATAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
7 18 0.58
8 13 0.42
ACGTcount: A:0.15, C:0.00, G:0.38, T:0.46
Consensus pattern (7 bp):
TAGGGTT
Found at i:45412368 original size:10 final size:10
Alignment explanation
Indices: 45412350--45412397 Score: 53
Period size: 10 Copynumber: 4.9 Consensus size: 10
45412340 TTTTTAGGAT
45412350 TTTAT-TTTA
1 TTTATCTTTA
45412359 TTTATCTTTA
1 TTTATCTTTA
*
45412369 TTTATCTTCA
1 TTTATCTTTA
* **
45412379 ATTAAATTTA
1 TTTATCTTTA
45412389 TTTATCTTT
1 TTTATCTTT
45412398 TAGGAATTTA
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
9 5 0.17
10 25 0.83
ACGTcount: A:0.25, C:0.08, G:0.00, T:0.67
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:45421555 original size:15 final size:15
Alignment explanation
Indices: 45421535--45421578 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
45421525 AGCAATTTAA
*
45421535 TTCTTTTCTTTTATG
1 TTCTTTTCTTTTATC
*
45421550 TTCTTTTAATTTTATC
1 TTCTTTT-CTTTTATC
*
45421566 TTTTTTTCTTTTA
1 TTCTTTTCTTTTA
45421579 ATTTTCATTC
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
15 12 0.50
16 12 0.50
ACGTcount: A:0.11, C:0.11, G:0.02, T:0.75
Consensus pattern (15 bp):
TTCTTTTCTTTTATC
Found at i:45421592 original size:21 final size:21
Alignment explanation
Indices: 45421550--45421592 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
45421540 TTCTTTTATG
*
45421550 TTCTTTTAATTTTATCTTTTT
1 TTCTTTTAATTTTATCTCTTT
45421571 TTCTTTTAATTTTCAT-TCTTT
1 TTCTTTTAATTTT-ATCTCTTT
45421592 T
1 T
45421593 CTACTTCTCC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 18 0.90
22 2 0.10
ACGTcount: A:0.14, C:0.12, G:0.00, T:0.74
Consensus pattern (21 bp):
TTCTTTTAATTTTATCTCTTT
Found at i:45422360 original size:11 final size:11
Alignment explanation
Indices: 45422346--45422370 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
45422336 GAAGAGAATG
45422346 AAAAAAAAAGA
1 AAAAAAAAAGA
45422357 AAAAAAAAAGA
1 AAAAAAAAAGA
45422368 AAA
1 AAA
45422371 GTTAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAGA
Found at i:45422925 original size:16 final size:16
Alignment explanation
Indices: 45422904--45422936 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
45422894 AATTAGGATT
45422904 TAAATAAAAAATCTTA
1 TAAATAAAAAATCTTA
*
45422920 TAAATAAAAAATTTTA
1 TAAATAAAAAATCTTA
45422936 T
1 T
45422937 TTACGGCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (16 bp):
TAAATAAAAAATCTTA
Found at i:45430186 original size:41 final size:41
Alignment explanation
Indices: 45430092--45430312 Score: 275
Period size: 41 Copynumber: 5.4 Consensus size: 41
45430082 CCTTGTGGGT
* * **
45430092 CTTTAGCAGCGTTTTTCAAGAAGCGTCGCTAA-GCGTGGAC
1 CTTTAGCGGCGTTTTTCAAGAAGCGCCGCTAATGCGCAGAC
45430132 CTTTAGCGGCGTTTTTCAAGAAGCGCCGCTAATGCGCAGAC
1 CTTTAGCGGCGTTTTTCAAGAAGCGCCGCTAATGCGCAGAC
* * *
45430173 CTTTAGCGGCGTTTTTCAGGAAGCGCCGCTAATGCACTGAC
1 CTTTAGCGGCGTTTTTCAAGAAGCGCCGCTAATGCGCAGAC
* * * * *
45430214 CTTTACCGGCGTTTGT-AAGGAATCGCCGCTAATGTGCAAAC
1 CTTTAGCGGCGTTTTTCAA-GAAGCGCCGCTAATGCGCAGAC
* * *
45430255 CTTTAGCGGCGTTTTTTCATGAAGTGCCACTAATGCGCAGAC
1 CTTTAGCGGCG-TTTTTCAAGAAGCGCCGCTAATGCGCAGAC
45430297 CTTTAGCGGCGTTTTT
1 CTTTAGCGGCGTTTTT
45430313 TGTAAAACGC
Statistics
Matches: 154, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
40 31 0.20
41 90 0.58
42 32 0.21
43 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.26, T:0.29
Consensus pattern (41 bp):
CTTTAGCGGCGTTTTTCAAGAAGCGCCGCTAATGCGCAGAC
Found at i:45430797 original size:40 final size:39
Alignment explanation
Indices: 45430742--45430856 Score: 160
Period size: 40 Copynumber: 2.9 Consensus size: 39
45430732 AATAAATTTT
*
45430742 TTTTAAATTACTTTTAAAATACTTTTTTTAATTTTTTTAA
1 TTTTAAAATA-TTTTAAAATACTTTTTTTAATTTTTTTAA
*
45430782 TTTTAAAATATTTTTAAAATAC-ATTTTTAATTTTTTTAA
1 TTTTAAAATA-TTTTAAAATACTTTTTTTAATTTTTTTAA
* *
45430821 TTTTAAAATAATTTAAAATAATTTTTTTTAATTTTT
1 TTTTAAAATATTTTAAAAT-ACTTTTTTTAATTTTT
45430857 AAAATAAATT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
38 8 0.12
39 27 0.40
40 32 0.48
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (39 bp):
TTTTAAAATATTTTAAAATACTTTTTTTAATTTTTTTAA
Found at i:45430820 original size:39 final size:38
Alignment explanation
Indices: 45430742--45430846 Score: 149
Period size: 39 Copynumber: 2.7 Consensus size: 38
45430732 AATAAATTTT
* *
45430742 TTTTAAATTACTTTTAAAATACTTTTTTTAATTTTTTTAA
1 TTTTAAAATA-TTTTAAAATAC-ATTTTTAATTTTTTTAA
45430782 TTTTAAAATATTTTTAAAATACATTTTTAATTTTTTTAA
1 TTTTAAAATA-TTTTAAAATACATTTTTAATTTTTTTAA
*
45430821 TTTTAAAATAATTTAAAATA-ATTTTT
1 TTTTAAAATATTTTAAAATACATTTTT
45430847 TTTAATTTTT
Statistics
Matches: 61, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
37 6 0.10
38 9 0.15
39 26 0.43
40 20 0.33
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (38 bp):
TTTTAAAATATTTTAAAATACATTTTTAATTTTTTTAA
Found at i:45430876 original size:22 final size:22
Alignment explanation
Indices: 45430832--45430884 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
45430822 TTTAAAATAA
**
45430832 TTTAAAATAATTTTTTTTAATT
1 TTTAAAATAATTTTTGGTAATT
*
45430854 TTTAAAATAAATTTTTGGTATTT
1 TTTAAAAT-AATTTTTGGTAATT
45430877 ATTTAAAA
1 -TTTAAAA
45430885 AACGGGCCGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 8 0.31
23 11 0.42
24 7 0.27
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.57
Consensus pattern (22 bp):
TTTAAAATAATTTTTGGTAATT
Found at i:45431621 original size:21 final size:21
Alignment explanation
Indices: 45431597--45431648 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
45431587 TTAGGGTTAT
*
45431597 GAGTTTGAGA-TTAGAGGTTTA
1 GAGTTTGAGATTTAG-GATTTA
*
45431618 GAGTTAGAGATTTAGGATTTA
1 GAGTTTGAGATTTAGGATTTA
45431639 GAGATTTGAG
1 GAG-TTTGAG
45431649 GTCGAGTTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
21 17 0.65
22 9 0.35
ACGTcount: A:0.31, C:0.00, G:0.33, T:0.37
Consensus pattern (21 bp):
GAGTTTGAGATTTAGGATTTA
Found at i:45431641 original size:15 final size:14
Alignment explanation
Indices: 45431607--45431645 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
45431597 GAGTTTGAGA
*
45431607 TTAGAGGTTTAGAG
1 TTAGAGATTTAGAG
*
45431621 TTAGAGATTTAGGAT
1 TTAGAGATTTA-GAG
45431636 TTAGAGATTT
1 TTAGAGATTT
45431646 GAGGTCGAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 10 0.45
15 12 0.55
ACGTcount: A:0.31, C:0.00, G:0.28, T:0.41
Consensus pattern (14 bp):
TTAGAGATTTAGAG
Found at i:45432429 original size:10 final size:10
Alignment explanation
Indices: 45432402--45432462 Score: 50
Period size: 10 Copynumber: 5.8 Consensus size: 10
45432392 GTGATTTAAA
45432402 ATTTTAAAATG
1 ATTTTAAAA-G
45432413 AATTTTAAAAG
1 -ATTTTAAAAG
**
45432424 ATTTTAAATT
1 ATTTTAAAAG
* *
45432434 TTTTTAAAAA
1 ATTTTAAAAG
*
45432444 ATTTAAAAAAG
1 ATTT-TAAAAG
45432455 ATTTTAAA
1 ATTTTAAA
45432463 CTTTTATTTT
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
10 21 0.54
11 9 0.23
12 9 0.23
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (10 bp):
ATTTTAAAAG
Found at i:45432763 original size:20 final size:19
Alignment explanation
Indices: 45432718--45432767 Score: 50
Period size: 19 Copynumber: 2.6 Consensus size: 19
45432708 ATATAAAAAT
*
45432718 TTTAAAATTTA-TCTAATTC
1 TTTAAAAATTACT-TAATTC
45432737 TTTAAAATATTACTTAATT-
1 TTTAAAA-ATTACTTAATTC
45432756 TTTCAAAAATTA
1 TTT-AAAAATTA
45432768 TTTATTTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
19 14 0.52
20 12 0.44
21 1 0.04
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (19 bp):
TTTAAAAATTACTTAATTC
Found at i:45435277 original size:12 final size:12
Alignment explanation
Indices: 45435260--45435286 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
45435250 TAGCAATCAA
45435260 TTTTGGTGTAAT
1 TTTTGGTGTAAT
45435272 TTTTGGTGTAAT
1 TTTTGGTGTAAT
45435284 TTT
1 TTT
45435287 GAATTTCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.22, T:0.63
Consensus pattern (12 bp):
TTTTGGTGTAAT
Found at i:45437484 original size:43 final size:43
Alignment explanation
Indices: 45437409--45437679 Score: 280
Period size: 43 Copynumber: 6.3 Consensus size: 43
45437399 GAATTGTACT
* * *
45437409 TTTAGCGGCGTTTGTGA-TAAAGCGTCGCTAAAGATCATGTTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGTCGCTAAAGGTCATGGTC
* * * *
45437451 TTTAGTGGCGTTTGTGAGTAAAGCGTCGCTAAAGATCATGTTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGTCGCTAAAGGTCATGGTC
* * *
45437494 TTTAGCGGCGTTTGTGGAAAAAAGCG-CTGTTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGT-GAGAAAAGCGTC-GCTAAAGGTCATGGTC
* * * * * *
45437538 TTTAGCGGTGTTT-TTAGGAAAAGCGCCACTAAAGCTCATGTTC
1 TTTAGCGGCGTTTGTGA-GAAAAGCGTCGCTAAAGGTCATGGTC
* * *
45437581 TATAGCGGCGTTTGTG-GTTAAAGAGTCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGAG-AAAAGCGTCGCTAAAGGTCATGGTC
* * *
45437624 TTTAGCGGTGTTTGTGAGAAAAGCGCCGTTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGTCGCTAAAGGTCATGGTC
45437667 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
45437680 TTAGAAATAA
Statistics
Matches: 189, Mismatches: 32, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
42 18 0.10
43 136 0.72
44 35 0.19
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.33
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGAGAAAAGCGTCGCTAAAGGTCATGGTC
Found at i:45437649 original size:86 final size:85
Alignment explanation
Indices: 45437409--45437679 Score: 321
Period size: 86 Copynumber: 3.2 Consensus size: 85
45437399 GAATTGTACT
* * * * * * *
45437409 TTTAGCGGCGTTTGTGATAAAGCGTCGCTAAAGATCATGTTCTTTAGTGGCGTTTGTGAGTAAAG
1 TTTAGCGGCGTTTGTGGTAAAGAGTCGCTAAAGGTCATGGTCTTTAGCGGTGTTTGTGAGAAAAG
*
45437474 CGTCGCTAAAGATCATGTTC
66 CGCCGCTAAAGATCATGTTC
* * * *
45437494 TTTAGCGGCGTTTGTGGAAAAAAG-CGCTGTTAAAGGTCTTGGTCTTTAGCGGTGTTT-TTAGGA
1 TTTAGCGGCGTTTGTGGTAAAGAGTCGC---TAAAGGTCATGGTCTTTAGCGGTGTTTGTGA-GA
* *
45437557 AAAGCGCCACTAAAGCTCATGTTC
62 AAAGCGCCGCTAAAGATCATGTTC
*
45437581 TATAGCGGCGTTTGTGGTTAAAGAGTCGCTAAAGGTCATGGTCTTTAGCGGTGTTTGTGAGAAAA
1 TTTAGCGGCGTTTGTGG-TAAAGAGTCGCTAAAGGTCATGGTCTTTAGCGGTGTTTGTGAGAAAA
* * *
45437646 GCGCCGTTAAAGGTCATGGTC
65 GCGCCGCTAAAGATCATGTTC
45437667 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
45437680 TTAGAAATAA
Statistics
Matches: 155, Mismatches: 24, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
84 3 0.02
85 20 0.13
86 62 0.40
87 62 0.40
88 5 0.03
89 3 0.02
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.33
Consensus pattern (85 bp):
TTTAGCGGCGTTTGTGGTAAAGAGTCGCTAAAGGTCATGGTCTTTAGCGGTGTTTGTGAGAAAAG
CGCCGCTAAAGATCATGTTC
Found at i:45437700 original size:130 final size:130
Alignment explanation
Indices: 45437409--45437701 Score: 380
Period size: 130 Copynumber: 2.3 Consensus size: 130
45437399 GAATTGTACT
* * * *
45437409 TTTAGCGGCGTTTGT-G-ATAAAGCGTCGCTAAAGATCATGTTCTTTAGTGGCGTTTGTGAGTAA
1 TTTAGCGGCGTTTTTAGAATAAA-CGCCGCTAAAGATCATGTTCTATAGCGGCGTTTGTGAGTAA
* * * *
45437472 AGCGTCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGGAAAAAAGCGCTGTTAAAGGTCTTGGT
65 AGAGTCGCTAAAGATCATGGTCTTTAGCGGCGTTTGTGGAAAAAAGCGCCGTTAAAGGTCATGGT
45437537 C
130 C
* * * *
45437538 TTTAGCGGTGTTTTTAGGAA-AAGCGCCACTAAAGCTCATGTTCTATAGCGGCGTTTGTG-GTTA
1 TTTAGCGGCGTTTTTA-GAATAAACGCCGCTAAAGATCATGTTCTATAGCGGCGTTTGTGAG-TA
* * *
45437601 AAGAGTCGCTAAAGGTCATGGTCTTTAGCGGTGTTTGT-GAGAAAAGCGCCGTTAAAGGTCATGG
64 AAGAGTCGCTAAAGATCATGGTCTTTAGCGGCGTTTGTGGAAAAAAGCGCCGTTAAAGGTCATGG
45437665 TC
129 TC
45437667 TTTAGCGGCGTTTTTAGAAATAAACGCCGCTAAAG
1 TTTAGCGGCGTTTTTAG-AATAAACGCCGCTAAAG
45437702 TTAGCGACGA
Statistics
Matches: 140, Mismatches: 18, Indels: 11
0.83 0.11 0.07
Matches are distributed among these distances:
128 1 0.01
129 56 0.40
130 79 0.56
131 3 0.02
132 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (130 bp):
TTTAGCGGCGTTTTTAGAATAAACGCCGCTAAAGATCATGTTCTATAGCGGCGTTTGTGAGTAAA
GAGTCGCTAAAGATCATGGTCTTTAGCGGCGTTTGTGGAAAAAAGCGCCGTTAAAGGTCATGGTC
Found at i:45437875 original size:10 final size:10
Alignment explanation
Indices: 45437862--45437903 Score: 54
Period size: 9 Copynumber: 4.5 Consensus size: 10
45437852 TTGGGAGCAG
45437862 TTTGTTTCAT
1 TTTGTTTCAT
45437872 TTTGTTTC-T
1 TTTGTTTCAT
*
45437881 TTTGTTT-AC
1 TTTGTTTCAT
45437890 TTTG-TTCAT
1 TTTGTTTCAT
45437899 TTTGT
1 TTTGT
45437904 AATGTTACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
8 2 0.07
9 17 0.63
10 8 0.30
ACGTcount: A:0.07, C:0.10, G:0.12, T:0.71
Consensus pattern (10 bp):
TTTGTTTCAT
Found at i:45442246 original size:10 final size:10
Alignment explanation
Indices: 45442231--45442272 Score: 54
Period size: 9 Copynumber: 4.5 Consensus size: 10
45442221 CTGGGAGCAG
45442231 TTTGTTTCAT
1 TTTGTTTCAT
45442241 TTTGTTTC-T
1 TTTGTTTCAT
*
45442250 TTTGTTT-AC
1 TTTGTTTCAT
45442259 TTTG-TTCAT
1 TTTGTTTCAT
45442268 TTTGT
1 TTTGT
45442273 AATGTTACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
8 2 0.07
9 17 0.63
10 8 0.30
ACGTcount: A:0.07, C:0.10, G:0.12, T:0.71
Consensus pattern (10 bp):
TTTGTTTCAT
Found at i:45450205 original size:18 final size:19
Alignment explanation
Indices: 45450178--45450221 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
45450168 CCCTTCCATC
*
45450178 GATTTTTGCTTC-TCTTAT
1 GATTTCTGCTTCTTCTTAT
45450196 GATTTCTGCTTCTTCTTAT
1 GATTTCTGCTTCTTCTTAT
45450215 GATTTCT
1 GATTTCT
45450222 ATTTTCTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 11 0.46
19 13 0.54
ACGTcount: A:0.11, C:0.18, G:0.11, T:0.59
Consensus pattern (19 bp):
GATTTCTGCTTCTTCTTAT
Found at i:45450583 original size:19 final size:20
Alignment explanation
Indices: 45450561--45450604 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
45450551 TGATTTCTGC
*
45450561 TTCTTCTC-GTAGGTTTCTT
1 TTCTTCTCTGTACGTTTCTT
*
45450580 TTCTTCTCTTTACGTTTCTT
1 TTCTTCTCTGTACGTTTCTT
45450600 TTCTT
1 TTCTT
45450605 TTCTCCATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.05, C:0.23, G:0.09, T:0.64
Consensus pattern (20 bp):
TTCTTCTCTGTACGTTTCTT
Found at i:45450711 original size:16 final size:16
Alignment explanation
Indices: 45450690--45450720 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
45450680 CGATTTCGTT
45450690 TTTCTTGAAATTTGTA
1 TTTCTTGAAATTTGTA
45450706 TTTCTTGAAATTTGT
1 TTTCTTGAAATTTGT
45450721 TGGAGTTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.23, C:0.06, G:0.13, T:0.58
Consensus pattern (16 bp):
TTTCTTGAAATTTGTA
Found at i:45450753 original size:10 final size:10
Alignment explanation
Indices: 45450749--45450774 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
45450739 CATTTCTTGG
45450749 AATTTGTTGA
1 AATTTGTTGA
45450759 AATTTGTTGA
1 AATTTGTTGA
45450769 AATTTG
1 AATTTG
45450775 CATTTCTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50
Consensus pattern (10 bp):
AATTTGTTGA
Found at i:45454138 original size:129 final size:129
Alignment explanation
Indices: 45453993--45454260 Score: 482
Period size: 129 Copynumber: 2.1 Consensus size: 129
45453983 GCCTTTTAGA
* *
45453993 TTTTTTAAAATTTTAATTTAGTAAAGGTAAAATTACACTTTGGTGTCCTTAAAAATGATAAAAAT
1 TTTTTTAAAATTTTAATTTAGTAAAGGTAAAATTACAATTTGGTGCCCTTAAAAATGATAAAAAT
*
45454058 TTGATTTAATCCTTTAAAAATTATAAAGATATAGGCTATTCAAATAGTAAAATTGTATTTTTAC
66 TTGATTTAACCCTTTAAAAATTATAAAGATATAGGCTATTCAAATAGTAAAATTGTATTTTTAC
45454122 TTTTTTAAAATTTTAATTTAGTAAAGGTAAAATTACAATTTGGTGCCCTTAAAAATGATAAAAAT
1 TTTTTTAAAATTTTAATTTAGTAAAGGTAAAATTACAATTTGGTGCCCTTAAAAATGATAAAAAT
*
45454187 TTGATTTAACCCTTTAAAAATTATAAAGATATAGGCTATTCAAATAGTGAAATTGTATTTTTAC
66 TTGATTTAACCCTTTAAAAATTATAAAGATATAGGCTATTCAAATAGTAAAATTGTATTTTTAC
* *
45454251 TATTGTAAAA
1 TTTTTTAAAA
45454261 ATTAAAATTT
Statistics
Matches: 133, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
129 133 1.00
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.41
Consensus pattern (129 bp):
TTTTTTAAAATTTTAATTTAGTAAAGGTAAAATTACAATTTGGTGCCCTTAAAAATGATAAAAAT
TTGATTTAACCCTTTAAAAATTATAAAGATATAGGCTATTCAAATAGTAAAATTGTATTTTTAC
Found at i:45454371 original size:17 final size:19
Alignment explanation
Indices: 45454343--45454377 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
45454333 GTTAATTAAT
45454343 TTTTTTATAAA-TATTTTA
1 TTTTTTATAAATTATTTTA
45454361 TTTTTTA-AAATTATTTT
1 TTTTTTATAAATTATTTT
45454378 TTAAATTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTTTTATAAATTATTTTA
Found at i:45454374 original size:13 final size:13
Alignment explanation
Indices: 45454358--45454382 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45454348 TATAAATATT
45454358 TTATTTTTTAAAA
1 TTATTTTTTAAAA
45454371 TTATTTTTTAAA
1 TTATTTTTTAAA
45454383 TTTTAATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TTATTTTTTAAAA
Found at i:45454379 original size:20 final size:21
Alignment explanation
Indices: 45454363--45454405 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
45454353 ATATTTTATT
45454363 TTTTAA-AATTATTTTTTAAA
1 TTTTAATAATTATTTTTTAAA
**
45454383 TTTTAATAATTATTAATTAAA
1 TTTTAATAATTATTTTTTAAA
45454404 TT
1 TT
45454406 GATTTGAACG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
TTTTAATAATTATTTTTTAAA
Found at i:45456352 original size:298 final size:299
Alignment explanation
Indices: 45455815--45456639 Score: 782
Period size: 298 Copynumber: 2.8 Consensus size: 299
45455805 CTCATTAGAG
* * * *
45455815 TATGCATAATACAATTAAAATGTAAATATTATATTAAATTAAAGTC-ATGGTTTAGTTGTAACAT
1 TATGCATAATACAATTAAAATGT-TATATTATATTAAAATAAA-TCTTTGG-TTAG-TGTAAAAT
* * * * * * * * * * *
45455879 TGTTTAATTATTGTCAATAACTTGAG-TTAAATCCAATCATATATAATTTTCTATTTGTTTTTCA
62 TGTTTTATTAATGTAAATAGCATGAGTTTAAATCTAATCACATAAAATTTTTTATTGGTTTTTTA
* * * * * * * *
45455943 GAAATAGAAAGACAAAAATACTCTCGAATTATATAACTAATTTTAATTATGGAATGATATTTTTG
127 GAAATAAAAAGACTAAAATACTCTCAAATAATATAACTTATTTTAATTACGGAATAACATTTTTG
* * *** * * *
45456008 AAATTTTCTTAGCTGGGTTGGTGTTCGGTTGACTCGTAATACCAACTTAGTTAGGGGCTT-A-AA
192 AAATTTTCCTAACCAAGTTGGTGCTCGGTTGACTCATAACACCAAC----TTAGGGGCTTAATAA
* * *
45456071 TACTA-AT-ATA-A-ATA-A-ATATATAATTGAGGGAGATTATAAAA
253 TACTATATAATAGAGATAGAGATATACAATTGAGAGAGATAATAAAA
45456112 TATGCATAATACAATTAAAATGTTGATATTATATTAAAATAAATCTTTGGTTCAGTGATAAAATT
1 TATGCATAATACAATTAAAATGTT-ATATTATATTAAAATAAATCTTTGGTT-AGTG-TAAAATT
* * *
45456177 GTTTTATTAATGTAAATAGCATAAGTTTAAATCTAATCACATACAATTTTTTATTGGTTTTTTAA
63 GTTTTATTAATGTAAATAGCATGAGTTTAAATCTAATCACATAAAATTTTTTATTGGTTTTTTAG
* * *
45456242 AAATAAAAAGACTAAAATA-TCCACAAATAATATAAGTTATTTTAATTACAGAATAACATTTTTG
128 AAATAAAAAGACTAAAATACT-CTCAAATAATATAACTTATTTTAATTACGGAATAACATTTTTG
* * * *
45456306 AAATTTCCCTAACCAAGTTGGTGCCCGGTTGACTCATGACACCAACTTAGGGGCTTAAATAATAG
192 AAATTTTCCTAACCAAGTTGGTGCTCGGTTGACTCATAACACCAACTTAGGGGCTT-AATAATAC
* *
45456371 TATATAGATAGAGATAGAGATATACAATTGATAGAGATAATAAAG
256 TATATA-ATAGAGATAGAGATATACAATTGAGAGAGATAATAAAA
* * * *
45456416 TATGTATAATATAGTTAAAAT-TTA-A--ATATTAAAATAAAGCTTTGGATTAGTGGTAAAATTG
1 TATGCATAATACAATTAAAATGTTATATTATATTAAAATAAATCTTTGG-TTAGT-GTAAAATTG
* * * * * * * *
45456477 TTTTATTAATATATATAGCACGGGTTCAAATCTAGTTACATATAAATTTTTTATTGATTTTTTAG
64 TTTTATTAATGTAAATAGCATGAGTTTAAATCTAATCACATA-AAATTTTTTATTGGTTTTTTAG
* * * * *
45456542 AAATAAAAATACTAAAATACTCTCAAATAATTTAACATATTTTAATTACGGAA-AGACATTTATA
128 AAATAAAAAGACTAAAATACTCTCAAATAATATAACTTATTTTAATTACGGAATA-ACATTTTTG
* * *
45456606 AAATTTTGCTAACCAAATTGGTGCTCGATTGACT
192 AAATTTTCCTAACCAAGTTGGTGCTCGGTTGACT
45456640 TGTGGCACTG
Statistics
Matches: 434, Mismatches: 73, Indels: 39
0.79 0.13 0.07
Matches are distributed among these distances:
294 10 0.02
296 7 0.02
297 77 0.18
298 120 0.28
299 65 0.15
300 106 0.24
301 3 0.01
302 4 0.01
303 3 0.01
304 39 0.09
ACGTcount: A:0.40, C:0.09, G:0.13, T:0.38
Consensus pattern (299 bp):
TATGCATAATACAATTAAAATGTTATATTATATTAAAATAAATCTTTGGTTAGTGTAAAATTGTT
TTATTAATGTAAATAGCATGAGTTTAAATCTAATCACATAAAATTTTTTATTGGTTTTTTAGAAA
TAAAAAGACTAAAATACTCTCAAATAATATAACTTATTTTAATTACGGAATAACATTTTTGAAAT
TTTCCTAACCAAGTTGGTGCTCGGTTGACTCATAACACCAACTTAGGGGCTTAATAATACTATAT
AATAGAGATAGAGATATACAATTGAGAGAGATAATAAAA
Found at i:45461246 original size:18 final size:18
Alignment explanation
Indices: 45461211--45461268 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
45461201 GTAATAAGAG
*
45461211 ACGTTTTGAAAATTAATA
1 ACGTTTTGAAAATGAATA
45461229 ACGTTTTGAAAGA-GAATA
1 ACGTTTTGAAA-ATGAATA
*
45461247 AC-TTTT-AAATATGAATC
1 ACGTTTTGAAA-ATGAATA
45461264 ACGTT
1 ACGTT
45461269 GAAATTGATC
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
16 4 0.12
17 10 0.29
18 19 0.56
19 1 0.03
ACGTcount: A:0.41, C:0.09, G:0.14, T:0.36
Consensus pattern (18 bp):
ACGTTTTGAAAATGAATA
Found at i:45463940 original size:17 final size:17
Alignment explanation
Indices: 45463898--45463941 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 17
45463888 AATTCACGAA
45463898 AATGATGATACATGAAAT
1 AATGAT-ATACATGAAAT
*
45463916 ATTGATATA-ATGAAAT
1 AATGATATACATGAAAT
45463932 GAATGATATA
1 -AATGATATA
45463942 TGTTTATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 7 0.30
17 11 0.48
18 5 0.22
ACGTcount: A:0.50, C:0.02, G:0.16, T:0.32
Consensus pattern (17 bp):
AATGATATACATGAAAT
Found at i:45468033 original size:3 final size:3
Alignment explanation
Indices: 45468025--45468052 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
45468015 CTCTATGGGA
45468025 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
45468053 TGGGATCCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:45469161 original size:19 final size:19
Alignment explanation
Indices: 45469137--45469178 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
45469127 CAAGGGTGTT
*
45469137 GGTGCGAGTAGCAAGGCGC
1 GGTGCGAATAGCAAGGCGC
45469156 GGTGCGAATAGCAAGGCGC
1 GGTGCGAATAGCAAGGCGC
45469175 GGTG
1 GGTG
45469179 TGAGCAGATG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.21, C:0.19, G:0.48, T:0.12
Consensus pattern (19 bp):
GGTGCGAATAGCAAGGCGC
Found at i:45469613 original size:16 final size:15
Alignment explanation
Indices: 45469588--45469621 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
45469578 AAAGTTGATA
*
45469588 ATAATTAATATATATT
1 ATAATAAATATA-ATT
45469604 ATAATAAATATAATT
1 ATAATAAATATAATT
45469619 ATA
1 ATA
45469622 TACTTGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:45480624 original size:21 final size:21
Alignment explanation
Indices: 45480598--45480637 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
45480588 TCGTTCTAGT
45480598 TTGAAAGACTAGTATACAAGA
1 TTGAAAGACTAGTATACAAGA
45480619 TTGAAAGACTAGTATACAA
1 TTGAAAGACTAGTATACAA
45480638 ATTCATTCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.47, C:0.10, G:0.17, T:0.25
Consensus pattern (21 bp):
TTGAAAGACTAGTATACAAGA
Found at i:45486216 original size:27 final size:27
Alignment explanation
Indices: 45486185--45486237 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
45486175 TCTATTTGAG
*
45486185 TAATTA-ATTAATTAATCAGTTATTTTA
1 TAATTATATGAATTAATCA-TTATTTTA
*
45486212 TAATTATATGAATTAATTATTATTTT
1 TAATTATATGAATTAATCATTATTTT
45486238 TTTCTAGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 13 0.57
28 10 0.43
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.55
Consensus pattern (27 bp):
TAATTATATGAATTAATCATTATTTTA
Found at i:45486691 original size:16 final size:16
Alignment explanation
Indices: 45486670--45486709 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
45486660 CGTTTGGTTC
45486670 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
45486686 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
*
45486702 ACTGTAAT
1 GCTGTAAT
45486710 AGTAATTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.38, C:0.07, G:0.28, T:0.28
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:45488377 original size:38 final size:38
Alignment explanation
Indices: 45488333--45488408 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
45488323 TTGAGAAAAG
* *
45488333 GGGAAAAAATAGCAATTACTTTACCAAAATGGATCCCA
1 GGGAAAAAAGAGCAACTACTTTACCAAAATGGATCCCA
45488371 GGGAAAAAAGAGCAACTACTTTACCAAAATGGATCCCA
1 GGGAAAAAAGAGCAACTACTTTACCAAAATGGATCCCA
45488409 ATACAAGAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.45, C:0.20, G:0.17, T:0.18
Consensus pattern (38 bp):
GGGAAAAAAGAGCAACTACTTTACCAAAATGGATCCCA
Found at i:45489449 original size:40 final size:40
Alignment explanation
Indices: 45489365--45489460 Score: 113
Period size: 40 Copynumber: 2.4 Consensus size: 40
45489355 GTTTGGATAA
* * *
45489365 AAAACGCCGTTAAAAATCGAGCATTAGCGGCGCTTTACGT
1 AAAACGCCGCTAAAAATCGAGAATTAGCGGCGCTTTACGG
* **
45489405 AAAACGCCGCTAAAAAT-GAGAATTAGCGGTGCTTTTTGAG
1 AAAACGCCGCTAAAAATCGAGAATTAGCGGCGCTTTACG-G
*
45489445 AAAACGCCGCAAAAAA
1 AAAACGCCGCTAAAAA
45489461 CCTATGCCCA
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
39 17 0.35
40 31 0.65
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.20
Consensus pattern (40 bp):
AAAACGCCGCTAAAAATCGAGAATTAGCGGCGCTTTACGG
Found at i:45489561 original size:41 final size:41
Alignment explanation
Indices: 45489489--45489630 Score: 223
Period size: 41 Copynumber: 3.5 Consensus size: 41
45489479 AGACCATTCG
* * * * *
45489489 GGGCTTTAGCGGCATTCTTGGAAAAGCGCCGCTAATGCTCT
1 GGGCTTTAGCGGCGTTTTTTGTAAAGTGCCGCTAATGCTCT
45489530 GGGCTTTAGCGGCGTTTTTTGTAAAGTGCCGCTAATGCTCT
1 GGGCTTTAGCGGCGTTTTTTGTAAAGTGCCGCTAATGCTCT
45489571 GGGCTTTAGCGGCGTTTTTTGTAAAGCT-CCGCTAATGCTCT
1 GGGCTTTAGCGGCGTTTTTTGTAAAG-TGCCGCTAATGCTCT
45489612 GGGCTTTAGCGGCGTTTTT
1 GGGCTTTAGCGGCGTTTTT
45489631 GAAAAGCGCC
Statistics
Matches: 95, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
41 94 0.99
42 1 0.01
ACGTcount: A:0.15, C:0.21, G:0.30, T:0.35
Consensus pattern (41 bp):
GGGCTTTAGCGGCGTTTTTTGTAAAGTGCCGCTAATGCTCT
Found at i:45489981 original size:14 final size:14
Alignment explanation
Indices: 45489970--45490007 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
45489960 AGGGTTTAAT
45489970 ATATATGGTTTAGG
1 ATATATGGTTTAGG
*
45489984 GTATATGGTTTAGG
1 ATATATGGTTTAGG
45489998 ATATATGGTT
1 ATATATGGTT
45490008 AATTTAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.26, C:0.00, G:0.29, T:0.45
Consensus pattern (14 bp):
ATATATGGTTTAGG
Found at i:45490125 original size:14 final size:14
Alignment explanation
Indices: 45490094--45490158 Score: 78
Period size: 14 Copynumber: 4.6 Consensus size: 14
45490084 GGGTTCTAGT
*
45490094 TTAAGGGTT-GTGA
1 TTAAGGGTTAGGGA
45490107 TTTAAGGGTTAGGGA
1 -TTAAGGGTTAGGGA
*
45490122 TTAAGGGTTAGAGA
1 TTAAGGGTTAGGGA
*
45490136 TTAAGAGTTAGGGA
1 TTAAGGGTTAGGGA
*
45490150 TTTAGGGTT
1 TTAAGGGTT
45490159 TACGGATTTG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
14 41 0.93
15 3 0.07
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (14 bp):
TTAAGGGTTAGGGA
Found at i:45490125 original size:28 final size:28
Alignment explanation
Indices: 45490094--45490158 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 28
45490084 GGGTTCTAGT
* *
45490094 TTAAGGGTT-GTGATTTAAGGGTTAGGGA
1 TTAAGGGTTAGAGA-TTAAGAGTTAGGGA
45490122 TTAAGGGTTAGAGATTAAGAGTTAGGGA
1 TTAAGGGTTAGAGATTAAGAGTTAGGGA
*
45490150 TTTAGGGTT
1 TTAAGGGTT
45490159 TACGGATTTG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
28 30 0.91
29 3 0.09
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (28 bp):
TTAAGGGTTAGAGATTAAGAGTTAGGGA
Found at i:45490267 original size:74 final size:77
Alignment explanation
Indices: 45490175--45490318 Score: 195
Period size: 74 Copynumber: 1.9 Consensus size: 77
45490165 TTTGATGTCA
* * * *
45490175 GGTTAGGGTTTAATGTTTAGATTAATTAGTGTATTT-TAA-TT-TATATTAAATAAGGTTTAAGG
1 GGTTAGGATTTAAGGTTTAGATTAATTAGTATATTTCTAATTTATATATTAAATAAAGTTTAAGG
45490237 GTTAGGTATTCG
66 GTTAGGTATTCG
* * * *
45490249 GGTTAGGATTTAGGGTTTAGATTAATTAGTATTTTTCTAATTTATATATTTAATAAAGTTTAGGG
1 GGTTAGGATTTAAGGTTTAGATTAATTAGTATATTTCTAATTTATATATTAAATAAAGTTTAAGG
45490314 GTTAG
66 GTTAG
45490319 TAGTTAGTGG
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
74 31 0.53
75 3 0.05
76 2 0.03
77 23 0.39
ACGTcount: A:0.30, C:0.01, G:0.22, T:0.47
Consensus pattern (77 bp):
GGTTAGGATTTAAGGTTTAGATTAATTAGTATATTTCTAATTTATATATTAAATAAAGTTTAAGG
GTTAGGTATTCG
Found at i:45490345 original size:21 final size:21
Alignment explanation
Indices: 45490321--45490373 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
45490311 GGGGTTAGTA
*
45490321 GTTAGTGGTTAAAGGTTTGGG
1 GTTAGTGGTTAAAGGTTAGGG
* *
45490342 GTTAGGGGTTAAGGGTTAGGG
1 GTTAGTGGTTAAAGGTTAGGG
*
45490363 GTTTGTGGTTA
1 GTTAGTGGTTA
45490374 GTGATTTAGG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.17, C:0.00, G:0.45, T:0.38
Consensus pattern (21 bp):
GTTAGTGGTTAAAGGTTAGGG
Found at i:45490351 original size:14 final size:14
Alignment explanation
Indices: 45490334--45490374 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
45490324 AGTGGTTAAA
45490334 GGTTTGGGGTTAGG
1 GGTTTGGGGTTAGG
**
45490348 GGTTAAGGGTTAGG
1 GGTTTGGGGTTAGG
*
45490362 GGTTTGTGGTTAG
1 GGTTTGGGGTTAG
45490375 TGATTTAGGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.12, C:0.00, G:0.51, T:0.37
Consensus pattern (14 bp):
GGTTTGGGGTTAGG
Found at i:45493834 original size:28 final size:28
Alignment explanation
Indices: 45493792--45493852 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
45493782 ATTCTTTTCT
*
45493792 TTTGACAAAGAACTT-GAGGTTGAACTGA
1 TTTGACAAAGAACTTGGA-GTTGAACTAA
* *
45493820 TTTGACTAAGGACTTGGAGTTGAACTAA
1 TTTGACAAAGAACTTGGAGTTGAACTAA
45493848 TTTGA
1 TTTGA
45493853 TTCTTGTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 27 0.93
29 2 0.07
ACGTcount: A:0.33, C:0.10, G:0.25, T:0.33
Consensus pattern (28 bp):
TTTGACAAAGAACTTGGAGTTGAACTAA
Found at i:45493871 original size:5 final size:5
Alignment explanation
Indices: 45493861--45493887 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
45493851 GATTCTTGTT
45493861 TTTTA TTTTA TTTTA TTTTA TTTTA TT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TT
45493888 GGCAAGAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:45494343 original size:17 final size:17
Alignment explanation
Indices: 45494321--45494353 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
45494311 ATTTTTATTT
45494321 TGTAGCATTAAGTTTTC
1 TGTAGCATTAAGTTTTC
45494338 TGTAGCATTAAGTTTT
1 TGTAGCATTAAGTTTT
45494354 TATTTTGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.09, G:0.18, T:0.48
Consensus pattern (17 bp):
TGTAGCATTAAGTTTTC
Found at i:45494778 original size:43 final size:43
Alignment explanation
Indices: 45494724--45494951 Score: 294
Period size: 43 Copynumber: 5.3 Consensus size: 43
45494714 AGTTTATGTT
* ** *
45494724 TTTAGCGGCGTTTTTGCTAGAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGGGAGAAGCGCCGCTAAAGGTCTTGGTC
* * * ** * *
45494767 TATAGTGGCGTTTTTGATAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGGGAGAAGCGCCGCTAAAGGTCTTGGTC
* * *
45494810 TTTAGCGGCATTTGTGGGAAAAGTGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAGAAGCGCCGCTAAAGGTCTTGGTC
*
45494853 TTTAGTGGCGTTTGTGGGAGAAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAGAAGCGCCGCTAAAGGTCTTGGTC
* * *
45494896 TTTAGCAGTGTTTGTGGGAGAAGCGCTGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAGAAGCGCCGCTAAAGGTCTTGGTC
45494939 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
45494952 TTAGAAAAAA
Statistics
Matches: 163, Mismatches: 22, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 163 1.00
ACGTcount: A:0.19, C:0.17, G:0.32, T:0.32
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAGAAGCGCCGCTAAAGGTCTTGGTC
Found at i:45495044 original size:22 final size:22
Alignment explanation
Indices: 45495016--45495057 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
45495006 GGCGCTTTGC
*
45495016 AAAGCGCCGCTAAAGGCCTAAA
1 AAAGCGCCGCTAAAAGCCTAAA
45495038 AAAGCGCCGCTAAAAGCCTA
1 AAAGCGCCGCTAAAAGCCTA
45495058 TTTTGGTGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.29, G:0.21, T:0.10
Consensus pattern (22 bp):
AAAGCGCCGCTAAAAGCCTAAA
Found at i:45497029 original size:19 final size:19
Alignment explanation
Indices: 45497005--45497049 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
45496995 TTTTTCTTTT
45497005 TGCATT-CATTCCATACATA
1 TGCATTACATTCCAT-CATA
*
45497024 TGCATTACATTGCATCATA
1 TGCATTACATTCCATCATA
45497043 TGCATTA
1 TGCATTA
45497050 GATTTTCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.31, C:0.22, G:0.09, T:0.38
Consensus pattern (19 bp):
TGCATTACATTCCATCATA
Found at i:45499848 original size:9 final size:9
Alignment explanation
Indices: 45499788--45499849 Score: 63
Period size: 9 Copynumber: 7.0 Consensus size: 9
45499778 TGAAGGCAAA
45499788 AAAAAAAAC
1 AAAAAAAAC
* *
45499797 CAAAAACAC
1 AAAAAAAAC
*
45499806 AAAAATAA-
1 AAAAAAAAC
*
45499814 AAAAAGAAC
1 AAAAAAAAC
* *
45499823 AAAAGAGAC
1 AAAAAAAAC
45499832 AAAAAAAAC
1 AAAAAAAAC
45499841 AAAAAAAAC
1 AAAAAAAAC
45499850 CTCTACTGGG
Statistics
Matches: 41, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
8 7 0.17
9 34 0.83
ACGTcount: A:0.81, C:0.13, G:0.05, T:0.02
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:45500755 original size:97 final size:92
Alignment explanation
Indices: 45500629--45500805 Score: 273
Period size: 97 Copynumber: 1.9 Consensus size: 92
45500619 CATTCTAGGA
* *
45500629 AAAATTTGTTATCTTGATTGATTCATTCATTTCAAGCTTTGTTCTCAATAAAATTTCACCTTATC
1 AAAATTTGCTATCTTGATTAATTCATTCATTTCAAGCTTTGTTCTCAATAAAA-TT----TTATC
45500694 CATTGTGATAATCTTTTTCATCTTATCTTAGC
61 CATTGTGATAATCTTTTTCATCTTATCTTAGC
* *
45500726 AAAATTTGCTATCTTGATTAATTTATTCATTTCGAGCTTTGTTCTCAATAAAATTTTATCCATTG
1 AAAATTTGCTATCTTGATTAATTCATTCATTTCAAGCTTTGTTCTCAATAAAATTTTATCCATTG
45500791 TGATAATCTTTTTCA
66 TGATAATCTTTTTCA
45500806 AGCATTTTTG
Statistics
Matches: 76, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
92 25 0.33
96 2 0.03
97 49 0.64
ACGTcount: A:0.28, C:0.16, G:0.08, T:0.48
Consensus pattern (92 bp):
AAAATTTGCTATCTTGATTAATTCATTCATTTCAAGCTTTGTTCTCAATAAAATTTTATCCATTG
TGATAATCTTTTTCATCTTATCTTAGC
Found at i:45501309 original size:24 final size:24
Alignment explanation
Indices: 45501277--45501334 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
45501267 ATGTCCCTAA
*
45501277 ATTACAGTGGACTGAACCTTGAAG
1 ATTACAGTGGACTAAACCTTGAAG
* * *
45501301 ATTATAGTGGATTAAACTTTGAAG
1 ATTACAGTGGACTAAACCTTGAAG
45501325 ATTACAGTGG
1 ATTACAGTGG
45501335 GGCAGTCCGG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.34, C:0.10, G:0.24, T:0.31
Consensus pattern (24 bp):
ATTACAGTGGACTAAACCTTGAAG
Found at i:45501691 original size:50 final size:50
Alignment explanation
Indices: 45501629--45502419 Score: 280
Period size: 50 Copynumber: 15.8 Consensus size: 50
45501619 CTGGCAATGT
* * *
45501629 AGTGGAGTAGATTGAAGCTACAACGGCAAATCTTACTTCCCAGGTGATGC
1 AGTGGAGCAGATTAAAGCTACAACGGCGAATCTTACTTCCCAGGTGATGC
* * * *
45501679 AGTGGGGCAGATTAAAGCTACAACGACGAATCTTGCTTCCTCGACGT--TGC
1 AGTGGAGCAGATTAAAGCTACAACGGCGAATCTTACTTCC-C-AGGTGATGC
* ** ** * * * *
45501729 AATTTAAAAGATTGAGGCTGCAACGGCGAATCTTACTT-CCATGGCGATGC
1 AGTGGAGCAGATTAAAGCTACAACGGCGAATCTTACTTCCCA-GGTGATGC
* ** * **
45501779 AGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGTTTCCC-CGACATTGC
1 AGTGGAGCAGATTAAAGCTACAACGGCGAATCTTACTTCCCAGGTGA-TGC
* ** ** * ** * *
45501829 AATTTAAAAGATTGAAGCCGCAAAGGCGAATCTTACTT-CCATGGCGATGC
1 AGTGGAGCAGATTAAAGCTACAACGGCGAATCTTACTTCCCA-GGTGATGC
* ** * **
45501879 AGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGTTTCCC-CGACATTGC
1 AGTGGAGCAGATTAAAGCTACAACGGCGAATCTTACTTCCCAGGTGA-TGC
* ** ** * ** * *
45501929 AATTTAAAAGATTGAAGCCGCAAAGGCGAATCTTACTT-CCATGGCGATGC
1 AGTGGAGCAGATTAAAGCTACAACGGCGAATCTTACTTCCCA-GGTGATGC
* * **
45501979 AGTGGAGCAGATTGAAGCTACAACGGCGAATCTTGCTTCCTC--GACATTGC
1 AGTGGAGCAGATTAAAGCTACAACGGCGAATCTTACTTCC-CAGGTGA-TGC
* ** ** * * ** *
45502029 AATTTAAAAGATTGAGGCCGCAACGGCGAATCTTACTT-CCATGGCGATGC
1 AGTGGAGCAGATTAAAGCTACAACGGCGAATCTTACTTCCCA-GGTGATGC
* * **
45502079 AGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCC-CGACATTGC
1 AGTGGAGCAGATTAAAGCTACAACGGCGAATCTTACTTCCCAGGTGA-TGC
* ** ** * ** * * *
45502129 AATTTAAAAGATTGAAGCCGCAAAGGTGAATCTTACTT-CCATGGCGATGC
1 AGTGGAGCAGATTAAAGCTACAACGGCGAATCTTACTTCCCA-GGTGATGC
* * * * * **
45502179 AGTGGAGCAGATTGAAGCTATAACGGTGAATCTTGCTTCCC-CGACATTGC
1 AGTGGAGCAGATTAAAGCTACAACGGCGAATCTTACTTCCCAGGTGA-TGC
* ** ** ** ** * * * *
45502229 AATTTAAAAGATCGAAGCCGCAATGGCGAATTTTACTT-CCATGGCGATGT
1 AGTGGAGCAGATTAAAGCTACAACGGCGAATCTTACTTCCCA-GGTGATGC
* * * **
45502279 AGTGGAGCAGATTAAAGCTATAACGGCGAATCTTGCTTCCC-CGACATTGC
1 AGTGGAGCAGATTAAAGCTACAACGGCGAATCTTACTTCCCAGGTGA-TGC
* ** ** * * ** * * *
45502329 AATTTAAAAGATTGAACCCGCAACGGCGAATCTTACTTCCCTGGCGGTGC
1 AGTGGAGCAGATTAAAGCTACAACGGCGAATCTTACTTCCCAGGTGATGC
* * * *
45502379 AGTGGAACAGATTGAAGTTACAACGGCGAATCTTATTTCCC
1 AGTGGAGCAGATTAAAGCTACAACGGCGAATCTTACTTCCC
45502420 CGACATTGCA
Statistics
Matches: 512, Mismatches: 199, Indels: 60
0.66 0.26 0.08
Matches are distributed among these distances:
47 1 0.00
48 3 0.01
49 22 0.04
50 459 0.90
51 23 0.04
52 4 0.01
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.25
Consensus pattern (50 bp):
AGTGGAGCAGATTAAAGCTACAACGGCGAATCTTACTTCCCAGGTGATGC
Found at i:45501789 original size:100 final size:100
Alignment explanation
Indices: 45501637--45502429 Score: 1237
Period size: 100 Copynumber: 7.9 Consensus size: 100
45501627 GTAGTGGAGT
** * * *
45501637 AGATTGAAGCTACAACGGCAAATCTTACTTCCCA-GGTGATGCAGTGGGGCAGATTAAAGCTACA
1 AGATTGAAGCCGCAACGGCGAATCTTACTT-CCATGGCGATGCAGTGGAGCAGATTAAAGCTACA
* * *
45501701 ACGACGAATCTTGCTTCCTCGACGTTGCAATTTAAA
65 ACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAA
* *
45501737 AGATTGAGGCTGCAACGGCGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAA
1 AGATTGAAGCCGCAACGGCGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAA
* *
45501802 CGGTGAATCTTGTTTCCCCGACATTGCAATTTAAA
66 CGGCGAATCTTGCTTCCCCGACATTGCAATTTAAA
*
45501837 AGATTGAAGCCGCAAAGGCGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAA
1 AGATTGAAGCCGCAACGGCGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAA
* *
45501902 CGGTGAATCTTGTTTCCCCGACATTGCAATTTAAA
66 CGGCGAATCTTGCTTCCCCGACATTGCAATTTAAA
* *
45501937 AGATTGAAGCCGCAAAGGCGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTGAAGCTACAA
1 AGATTGAAGCCGCAACGGCGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAA
*
45502002 CGGCGAATCTTGCTTCCTCGACATTGCAATTTAAA
66 CGGCGAATCTTGCTTCCCCGACATTGCAATTTAAA
*
45502037 AGATTGAGGCCGCAACGGCGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAA
1 AGATTGAAGCCGCAACGGCGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAA
45502102 CGGCGAATCTTGCTTCCCCGACATTGCAATTTAAA
66 CGGCGAATCTTGCTTCCCCGACATTGCAATTTAAA
* * * *
45502137 AGATTGAAGCCGCAAAGGTGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTGAAGCTATAA
1 AGATTGAAGCCGCAACGGCGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAA
*
45502202 CGGTGAATCTTGCTTCCCCGACATTGCAATTTAAA
66 CGGCGAATCTTGCTTCCCCGACATTGCAATTTAAA
* * * * *
45502237 AGATCGAAGCCGCAATGGCGAATTTTACTTCCATGGCGATGTAGTGGAGCAGATTAAAGCTATAA
1 AGATTGAAGCCGCAACGGCGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAA
45502302 CGGCGAATCTTGCTTCCCCGACATTGCAATTTAAA
66 CGGCGAATCTTGCTTCCCCGACATTGCAATTTAAA
* * * * * *
45502337 AGATTGAACCCGCAACGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGTTACAA
1 AGATTGAAGCCGCAACGGCGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAA
**
45502402 CGGCGAATCTTATTTCCCCGACATTGCA
66 CGGCGAATCTTGCTTCCCCGACATTGCA
45502430 GTCAATTTGA
Statistics
Matches: 645, Mismatches: 47, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
99 3 0.00
100 642 1.00
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (100 bp):
AGATTGAAGCCGCAACGGCGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAA
CGGCGAATCTTGCTTCCCCGACATTGCAATTTAAA
Found at i:45502575 original size:82 final size:82
Alignment explanation
Indices: 45502470--45502934 Score: 534
Period size: 82 Copynumber: 5.7 Consensus size: 82
45502460 CTGAAGTTGC
* * *
45502470 AGTGGAGCGGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCCTTAAGT
1 AGTGGAGCAGA-TAGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCCTCAAGT
45502535 CTTATCTCCCTAAGCAGT
65 CTTATCTCCCTAAGCAGT
* *
45502553 AGTGGAGCAAATAGAACCACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGCCTCAAGTC
1 AGTGGAGCAGATAGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCCTCAAGTC
*
45502618 TTATCTCCCTAAGTAGT
66 TTATCTCCCTAAGCAGT
* * * *
45502635 AATGGAGTAGACAGAACCACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGCCTCAAGTC
1 AGTGGAGCAGATAGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCCTCAAGTC
45502700 TTATCTCCCTAAGCAGT
66 TTATCTCCCTAAGCAGT
* * * ** *
45502717 AGTGGAGCAGACAGAACCACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAAACATAACCACATA
1 AGTGGAGCAGATAGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGC--AGATCGCCTCA-A
*
45502782 -TCTTATTTCCCTAAGCAGT
63 GTCTTATCTCCCTAAGCAGT
* * * * * *
45502801 AGTGGAGTAGATCG--CCTCA-AGTCTTATCTCCCTAAGCAGTAGTAGAGCA-AACAGAAC-CAC
1 AGTGGAGCAGATAGAACCACAGA-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-G-CCTCA-
* *
45502861 AGATCTTATCTCTCAAAGCAGT
62 AG-TCTTATCTCCCTAAGCAGT
* *
45502883 AGTGGAGCAGATCG--CCTCA-AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
1 AGTGGAGCAGATAGAACCACAGA-TCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
45502935 GAAATAAACC
Statistics
Matches: 335, Mismatches: 38, Indels: 18
0.86 0.10 0.05
Matches are distributed among these distances:
79 1 0.00
80 4 0.01
81 2 0.01
82 281 0.84
83 10 0.03
84 36 0.11
85 1 0.00
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.24
Consensus pattern (82 bp):
AGTGGAGCAGATAGAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCCTCAAGTC
TTATCTCCCTAAGCAGT
Found at i:45502683 original size:124 final size:123
Alignment explanation
Indices: 45502486--45502934 Score: 490
Period size: 124 Copynumber: 3.7 Consensus size: 123
45502476 GCGGATTAAA
* * *
45502486 ACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-G--CCTTA-AG-TCTTATCTCCCT
1 ACCACAAATCTTATCTCCCTAAGCAGTAATGGAGCA-AACAGAACC--ACAGATCTTATCTCCCT
* * *
45502546 AAGCAGTAGTGGAGCAAATAGAAC-CACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATC-G
63 AAGCAGTAGTGGAGCAGATCG-CCTCA-AG-TCTTATCTCCCTAAGCAGTAGTAGAGCAGA-CAG
* * * * *
45502609 -CCTCAAGTCTTATCTCCCTAAGTAGTAATGGAGTAGACAGAACCACAGATCTTATCTCCCTAAG
1 ACCACAAATCTTATCTCCCTAAGCAGTAATGGAGCAAACAGAACCACAGATCTTATCTCCCTAAG
* *
45502673 TAGTAGTGGAGCAGATCGCCTCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAG
66 CAGTAGTGGAGCAGATCGCCTCAAGTCTTATCTCCCTAAGCAGTAGTAGAGCAGACAG
* * * *
45502731 AACCACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAAACATAACCACATATCTTATTTCCCTAA
1 -ACCACAAATCTTATCTCCCTAAGCAGTAATGGAGCAAACAGAACCACAGATCTTATCTCCCTAA
* *
45502796 GCAGTAGTGGAGTAGATCGCCTCAAGTCTTATCTCCCTAAGCAGTAGTAGAGCAAACAG
65 GCAGTAGTGGAGCAGATCGCCTCAAGTCTTATCTCCCTAAGCAGTAGTAGAGCAGACAG
* * * * * *
45502855 AACCACAGATCTTATCTCTCAAAGCAGTAGTGGAGCAGATC-G--CCTCA-AGTCTTATCTCCCT
1 -ACCACAAATCTTATCTCCCTAAGCAGTAATGGAGCA-AACAGAACCACAGA-TCTTATCTCCCT
45502916 AAGCAGTAGTGGAGCAGAT
63 AAGCAGTAGTGGAGCAGAT
45502935 GAAATAAACC
Statistics
Matches: 281, Mismatches: 34, Indels: 23
0.83 0.10 0.07
Matches are distributed among these distances:
121 3 0.01
122 94 0.33
123 5 0.02
124 177 0.63
125 2 0.01
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (123 bp):
ACCACAAATCTTATCTCCCTAAGCAGTAATGGAGCAAACAGAACCACAGATCTTATCTCCCTAAG
CAGTAGTGGAGCAGATCGCCTCAAGTCTTATCTCCCTAAGCAGTAGTAGAGCAGACAG
Found at i:45502857 original size:206 final size:204
Alignment explanation
Indices: 45502494--45502934 Score: 695
Period size: 206 Copynumber: 2.2 Consensus size: 204
45502484 AAACCACAGA
** *
45502494 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCCTTAAGTCTTATCTCCCTAAGCAGTAGTGGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCCACAAATCTTATCTCCCTAAGCAGTAGTGGA
*
45502559 GCAAATAGAACCACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGCCTCAAGTCTTATCT
66 GCAAACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGCCTCAAGTCTTATCT
* * * * * *
45502624 CCCTAAGTAGTAATGGAGTAGACAGAACCACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGAT
131 CCCTAAGCAGTAATAGAGCAAACAGAACCACAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGAT
45502689 CGCCTCAAG
196 CGCCTCAAG
45502698 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAGAACCACAAATCTTATCTCCCTAAGCAGTAGT
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-G--CCACAAATCTTATCTCCCTAAGCAGTAGT
* * * * *
45502762 GGAGCAAACATAACCACATATCTTATTTCCCTAAGCAGTAGTGGAGTAGATCGCCTCAAGTCTTA
63 GGAGCAAACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGCCTCAAGTCTTA
* *
45502827 TCTCCCTAAGCAGTAGTAGAGCAAACAGAACCACAGATCTTATCTCTCAAAGCAGTAGTGGAGCA
128 TCTCCCTAAGCAGTAATAGAGCAAACAGAACCACAGATCTTATCTCCCAAAGCAGTAGTGGAGCA
45502892 GATCGCCTCAAG
193 GATCGCCTCAAG
45502904 TCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
45502935 GAAATAAACC
Statistics
Matches: 216, Mismatches: 17, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
203 1 0.00
204 31 0.14
206 184 0.85
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (204 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCCACAAATCTTATCTCCCTAAGCAGTAGTGGA
GCAAACAGAACCACAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGCCTCAAGTCTTATCT
CCCTAAGCAGTAATAGAGCAAACAGAACCACAGATCTTATCTCCCAAAGCAGTAGTGGAGCAGAT
CGCCTCAAG
Found at i:45503305 original size:19 final size:19
Alignment explanation
Indices: 45503265--45503305 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
45503255 CTTAGCCTAG
*
45503265 CAAAACCCAATATCCAAAA
1 CAAAACCCAATACCCAAAA
45503284 CAAAACCCAA-ACCCAAATA
1 CAAAACCCAATACCCAAA-A
45503303 CAA
1 CAA
45503306 CTAAACCCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.59, C:0.34, G:0.00, T:0.07
Consensus pattern (19 bp):
CAAAACCCAATACCCAAAA
Found at i:45504932 original size:47 final size:47
Alignment explanation
Indices: 45504841--45504931 Score: 112
Period size: 46 Copynumber: 2.0 Consensus size: 47
45504831 GTTAATTTTG
* **
45504841 GTAATATTTAAAAAAAATTAGATAAAATTATCAATCTCAGTTTTTAA
1 GTAATATTTAAAAAAAATTAGATAAAAATAAAAATCTCAGTTTTTAA
* * * *
45504888 GTAATATTT-ATAAAAATTAGGTAAAAATAAAAATTTTAGTTTTT
1 GTAATATTTAAAAAAAATTAGATAAAAATAAAAATCTCAGTTTTT
45504932 TTATTTCTTT
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
46 28 0.76
47 9 0.24
ACGTcount: A:0.48, C:0.03, G:0.08, T:0.41
Consensus pattern (47 bp):
GTAATATTTAAAAAAAATTAGATAAAAATAAAAATCTCAGTTTTTAA
Found at i:45504948 original size:18 final size:20
Alignment explanation
Indices: 45504920--45504968 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 20
45504910 AAAAATAAAA
*
45504920 ATTTTAGTTTTTTTA-TTTC
1 ATTTTACTTTTTTTATTTTC
*
45504939 TTTTTA--TTTTTTATTTTC
1 ATTTTACTTTTTTTATTTTC
45504957 ATTTTACTTTTT
1 ATTTTACTTTTT
45504969 GTAATTTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
17 7 0.28
18 9 0.36
19 5 0.20
20 4 0.16
ACGTcount: A:0.14, C:0.06, G:0.02, T:0.78
Consensus pattern (20 bp):
ATTTTACTTTTTTTATTTTC
Found at i:45505034 original size:16 final size:14
Alignment explanation
Indices: 45505005--45505031 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
45504995 TTTACAATTC
45505005 CAAATTATTATATT
1 CAAATTATTATATT
45505019 CAAATTATTATAT
1 CAAATTATTATAT
45505032 ATTGCATATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (14 bp):
CAAATTATTATATT
Found at i:45505270 original size:7 final size:7
Alignment explanation
Indices: 45505258--45505354 Score: 106
Period size: 7 Copynumber: 13.9 Consensus size: 7
45505248 ATAACCCAAT
45505258 CCCTAAC
1 CCCTAAC
45505265 CCCTAAC
1 CCCTAAC
*
45505272 CCATAAC
1 CCCTAAC
45505279 CCCTAAC
1 CCCTAAC
*
45505286 CCTTAAC
1 CCCTAAC
45505293 CCCTAAC
1 CCCTAAC
*
45505300 CCTTAAC
1 CCCTAAC
*
45505307 CCTTAA-
1 CCCTAAC
45505313 CCCTAAAC
1 CCCT-AAC
*
45505321 CCTTAAC
1 CCCTAAC
* *
45505328 CCATGAC
1 CCCTAAC
*
45505335 CTCTAAC
1 CCCTAAC
45505342 CCCTAAC
1 CCCTAAC
45505349 CCCTAA
1 CCCTAA
45505355 AACTTATTTA
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
6 3 0.04
7 69 0.92
8 3 0.04
ACGTcount: A:0.31, C:0.48, G:0.01, T:0.20
Consensus pattern (7 bp):
CCCTAAC
Found at i:45505470 original size:12 final size:12
Alignment explanation
Indices: 45505453--45505477 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
45505443 CTCTTAACAT
45505453 CTAACCCCTAAC
1 CTAACCCCTAAC
45505465 CTAACCCCTAAC
1 CTAACCCCTAAC
45505477 C
1 C
45505478 CCTAATCCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.52, G:0.00, T:0.16
Consensus pattern (12 bp):
CTAACCCCTAAC
Found at i:45505987 original size:114 final size:113
Alignment explanation
Indices: 45505861--45506078 Score: 255
Period size: 114 Copynumber: 1.9 Consensus size: 113
45505851 GCTTTACCGA
* *
45505861 AAACGCCGCTAA-TACTATTC-TTTAGCAGCGTTTTACCATAAACGCCACTAAT-TCTAATATAC
1 AAACGCCACTAATTA-TATTCTTTTA-CAGCGTTTTACCAAAAACGCCACTAATAT-TAATATAC
* *
45505923 ATCAAAACCAAACGTTGCGTTTTGGTTAAGGCAT-TTTGCGGCGCTTCCAAAT
63 ATCAAAACCAAACGGTGCGTTTTCGTTAA-G-ATATTTGCGGCGCTTCCAAAT
* * *** * *
45505975 AAACGCCACTAATTATGTTCTTTTACGGCGTTTTTTTAAAAACGCCACTAATATTAATCTACCTC
1 AAACGCCACTAATTATATTCTTTTACAGCGTTTTACCAAAAACGCCACTAATATTAATATACATC
*
45506040 AAGACCAAACGGTGCGTTTTCGTTAAGATATTTGCGGCG
66 AAAACCAAACGGTGCGTTTTCGTTAAGATATTTGCGGCG
45506079 TTTTATCGTA
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
112 2 0.02
113 10 0.11
114 69 0.78
115 7 0.08
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (113 bp):
AAACGCCACTAATTATATTCTTTTACAGCGTTTTACCAAAAACGCCACTAATATTAATATACATC
AAAACCAAACGGTGCGTTTTCGTTAAGATATTTGCGGCGCTTCCAAAT
Found at i:45506092 original size:74 final size:75
Alignment explanation
Indices: 45506014--45506153 Score: 212
Period size: 74 Copynumber: 1.9 Consensus size: 75
45506004 GTTTTTTTAA
* * *
45506014 AAACGCCACTAATAT-TAATCTACCTCAAGACCAAACGGTGCGTTTTCGTTAAGATA-TTTGCGG
1 AAACGCCACTAAT-TCTAATATACCTCAAAACCAAACGCTGCGTTTTCGTTAAGATATTTTGCGG
45506077 CGTTTTATCGT
65 CGTTTTATCGT
* *
45506088 AAACGCCACTAATTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGC
1 AAACGCCACTAATTCTAATATACCTCAAAACCAAACGCTGCGTTTTCGTTAAGATATTTTGCGGC
45506153 G
66 G
45506154 CATAAAAATA
Statistics
Matches: 59, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
73 1 0.02
74 49 0.83
75 9 0.15
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (75 bp):
AAACGCCACTAATTCTAATATACCTCAAAACCAAACGCTGCGTTTTCGTTAAGATATTTTGCGGC
GTTTTATCGT
Found at i:45506205 original size:188 final size:188
Alignment explanation
Indices: 45505888--45506288 Score: 667
Period size: 188 Copynumber: 2.1 Consensus size: 188
45505878 TTCTTTAGCA
* *
45505888 GCGTTTTACCATAAACGCCACTAATTCTAATATACATCAAAACCAAACGTTGCGTTTTGGTTAAG
1 GCGTTTTACCGTAAACGCCACTAATTCTAATATACATCAAAACCAAACGCTGCGTTTTGGTTAAG
* ** *
45505953 GCATTTTGCGGCGCTTCCAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTTTAAAAAC
66 GCATTTTGCGGCGCATAAAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTCTAAAAAC
* *
45506018 GCCACTAATATTAATCTACCTCAAGACCAAACGGTGCGTTTTCGTTAAGATATTTGCG
131 GCCACTAATACTAATCTACCTCAAGACCAAACGGTGCGTTTTCATTAAGATATTTGCG
* *
45506076 GCGTTTTATCGTAAACGCCACTAATTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTTAAG
1 GCGTTTTACCGTAAACGCCACTAATTCTAATATACATCAAAACCAAACGCTGCGTTTTGGTTAAG
*
45506141 GTATTTTGCGGCGCATAAAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTCTAAAAAC
66 GCATTTTGCGGCGCATAAAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTCTAAAAAC
*
45506206 GCCACTAATACTAATCTACCTCAAGACGAAACGGTGCGTTTTCATTAAGATATTTGCG
131 GCCACTAATACTAATCTACCTCAAGACCAAACGGTGCGTTTTCATTAAGATATTTGCG
* * *
45506264 GCGCTTTACCGAAAACGCCGCTAAT
1 GCGTTTTACCGTAAACGCCACTAAT
45506289 ACTATTCTTT
Statistics
Matches: 197, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
188 197 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (188 bp):
GCGTTTTACCGTAAACGCCACTAATTCTAATATACATCAAAACCAAACGCTGCGTTTTGGTTAAG
GCATTTTGCGGCGCATAAAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTCTAAAAAC
GCCACTAATACTAATCTACCTCAAGACCAAACGGTGCGTTTTCATTAAGATATTTGCG
Found at i:45506588 original size:226 final size:225
Alignment explanation
Indices: 45506070--45506663 Score: 892
Period size: 227 Copynumber: 2.6 Consensus size: 225
45506060 CGTTAAGATA
* * * **
45506070 TTTGCGGCGTTTTATCGTAAACGCCACTAATTCTAATATAC-CTCAAAACCAAACGCTGCGTTTT
1 TTTGCGGCGTTTTATAGAAAACGCCAC-AATTCTAATATACAAT-TGAACCAAACGCTGCGTTTT
*
45506134 GGTTAAGGTATTTTGCGGCGCATAAAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTC
64 GGTTAAGGTATTTTGCGGCGCATACAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTT-
* *
45506199 TAAAAACGCCACTAATACTAATCTACCTCAAGACGAAACGGTGCGTTTTCATTAAGATATTTGCG
128 TAAAAACGCCACTAATACTAATCTACCTCAAGACAAAACGGTACGTTTTCATTAAGATATTTGCG
45506264 GCGCTTTACCGAAAACGCCGCTAATACTATTCT
193 GCGCTTTACCGAAAACGCCGCTAATACTATTCT
*
45506297 TTTGCGGCGTTTTATAGAAAACGCCACAATGTCTAATATACAATTGAACCAAACGCTGTGTTTTG
1 TTTGCGGCGTTTTATAGAAAACGCCACAAT-TCTAATATACAATTGAACCAAACGCTGCGTTTTG
* *
45506362 GTTAAGGTATTTTGCGACGCATCCAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTTA
65 GTTAAGGTATTTTGCGGCGCATACAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTTA
* * *
45506427 AAAACGCCACTAATATTAATCTACCTCAAGACAAAATGGTACGTTTTCCTTAAGATATTTGCGGC
130 AAAACGCCACTAATACTAATCTACCTCAAGACAAAACGGTACGTTTTCATTAAGATATTTGCGGC
** *
45506492 GCTTT-TTGTTAAACGCCGCTAATACTATTCT
195 GCTTTACCG-AAAACGCCGCTAATACTATTCT
45506523 TTTGCGGCGTTTTTTATA-AAAACGCCACGAATTCTAATATACAATTGAACC-AACGCTGCGTTT
1 TTTGCGGCG--TTTTATAGAAAACGCCAC-AATTCTAATATACAATTGAACCAAACGCTGCGTTT
* *
45506586 TGGTTAAGGTATTTTGCGGTGCTTAC-AATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTT
63 TGGTTAAGGTATTTTGCGGCGCATACAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTT
* *
45506650 TAGAATCGCCACTA
128 TAAAAACGCCACTA
45506664 GTTCTTTAGG
Statistics
Matches: 337, Mismatches: 24, Indels: 14
0.90 0.06 0.04
Matches are distributed among these distances:
225 51 0.15
226 133 0.39
227 142 0.42
228 11 0.03
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (225 bp):
TTTGCGGCGTTTTATAGAAAACGCCACAATTCTAATATACAATTGAACCAAACGCTGCGTTTTGG
TTAAGGTATTTTGCGGCGCATACAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTTAA
AAACGCCACTAATACTAATCTACCTCAAGACAAAACGGTACGTTTTCATTAAGATATTTGCGGCG
CTTTACCGAAAACGCCGCTAATACTATTCT
Found at i:45506620 original size:113 final size:112
Alignment explanation
Indices: 45506088--45506668 Score: 520
Period size: 113 Copynumber: 5.1 Consensus size: 112
45506078 GTTTTATCGT
45506088 AAACGCCACTAATTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGC
1 AAACGCCACTAATTCTAATATACCTC-AAACC-AACGCTGCGTTTTGGTTAAGGTATTTTGCGGC
* * * *
45506153 GCATAAAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTCTAA
64 GCTTTACAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTATAA
* * * * ** *
45506202 AAACGCCACTAATACTAATCTACCTCAAGACGAAACGGTGCGTTTTCATTAAGATA-TTTGCGGC
1 AAACGCCACTAATTCTAATATACCTCAA-AC-CAACGCTGCGTTTTGGTTAAGGTATTTTGCGGC
* * * *
45506266 GCTTTACCGA-AAACGCCGCTAA-TACTATTCTTTTGCGGCG-TTTTATAGA
64 GCTTTA-CAATAAACGCCACTAATTA-TGTTCTTTTACGGCGTTTTTATA-A
* ** * *
45506315 AAACGCCAC-AATGTCTAATATACAATTGAACCAAACGCTGTGTTTTGGTTAAGGTATTTTGCGA
1 AAACGCCACTAAT-TCTAATATAC-CTCAAACC-AACGCTGCGTTTTGGTTAAGGTATTTTGCGG
* *
45506379 CGC-ATCCAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTT-TAA
63 CGCTTTAC-AATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTATAA
* * * * * ** *
45506428 AAACGCCACTAATAT-TAATCTACCTCAAGACAAAATGGTACGTTTTCCTTAAGATA-TTTGCGG
1 AAACGCCACTAAT-TCTAATATACCTCAA-AC-CAACGCTGCGTTTTGGTTAAGGTATTTTGCGG
**** * * *
45506491 CGCTTTTTGTTAAACGCCGCTAA-TACTATTCTTTTGCGGCGTTTTTTATAA
63 CGCTTTACAATAAACGCCACTAATTA-TGTTCTTTTACGGCG-TTTTTATAA
* * ** *
45506542 AAACGCCACGAATTCTAATATACAATTGAACCAACGCTGCGTTTTGGTTAAGGTATTTTGCGGTG
1 AAACGCCACTAATTCTAATATAC-CTCAAACCAACGCTGCGTTTTGGTTAAGGTATTTTGCGGCG
*
45506607 C-TTACAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTT-TAG
65 CTTTACAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTATAA
* *
45506653 AATCGCCACTAGTTCT
1 AAACGCCACTAATTCT
45506669 TTAGGTTTTA
Statistics
Matches: 364, Mismatches: 79, Indels: 51
0.74 0.16 0.10
Matches are distributed among these distances:
111 17 0.05
112 53 0.15
113 164 0.45
114 122 0.34
115 8 0.02
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (112 bp):
AAACGCCACTAATTCTAATATACCTCAAACCAACGCTGCGTTTTGGTTAAGGTATTTTGCGGCGC
TTTACAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTATAA
Found at i:45514369 original size:85 final size:86
Alignment explanation
Indices: 45514185--45514425 Score: 277
Period size: 85 Copynumber: 2.7 Consensus size: 86
45514175 AAATAAGCGT
* * * *
45514185 CGCTAAAGATCATGACCTTTAGCAGCACTTTTCCCAAAAACGCCGCTAAAGAACAAGAACAAGAA
1 CGCTAAAGAACAAGACCTTTAGCAGCGCTTTACCCAAAAACGCCGCTAAAGAACAAG-AC-----
* *
45514250 CTTTAACGATGCTTTCCATAAAAACGC
60 CTTTAACGACGCTTTCCACAAAAACGC
* *
45514277 CGCTAAAGAATAAGACCTTTAGCAGCGC-TTCCCCAAAAACGCCGCTAAAGAACAAGACCTTTAA
1 CGCTAAAGAACAAGACCTTTAGCAGCGCTTTACCCAAAAACGCCGCTAAAGAACAAGACCTTTAA
* *
45514341 CGACGCTTTCCCCGAAAACGC
66 CGACGCTTTCCACAAAAACGC
* * * ** *
45514362 CGTTAAAGAACAAGACTTTTAGCGGCGCTTTACCTGAAAACGCCGCTAAAGAGCAAGACCTTTA
1 CGCTAAAGAACAAGACCTTTAGCAGCGCTTTACCCAAAAACGCCGCTAAAGAACAAGACCTTTA
45514426 GCGGCGTGTT
Statistics
Matches: 131, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
85 47 0.36
86 31 0.24
90 2 0.02
91 27 0.21
92 24 0.18
ACGTcount: A:0.37, C:0.27, G:0.17, T:0.20
Consensus pattern (86 bp):
CGCTAAAGAACAAGACCTTTAGCAGCGCTTTACCCAAAAACGCCGCTAAAGAACAAGACCTTTAA
CGACGCTTTCCACAAAAACGC
Found at i:45514426 original size:43 final size:43
Alignment explanation
Indices: 45514185--45514431 Score: 235
Period size: 43 Copynumber: 5.6 Consensus size: 43
45514175 AAATAAGCGT
* * * * * *
45514185 CGCTAAAGATCATGACCTTTAGCAGCACTTTTCCCAAAAACGC
1 CGCTAAAGAACAAGACCTTTAGCGGCGCTTTCCCCGAAAACGC
* ** ***
45514228 CGCTAAAGAACAAGAACAAGAACTTTAACGATGCTTTCCATAAAAACGC
1 CGCTAAAGAACAAG-AC-----CTTTAGCGGCGCTTTCCCCGAAAACGC
* * *
45514277 CGCTAAAGAATAAGACCTTTAGCAGCGC-TTCCCCAAAAACGC
1 CGCTAAAGAACAAGACCTTTAGCGGCGCTTTCCCCGAAAACGC
* *
45514319 CGCTAAAGAACAAGACCTTTAACGACGCTTTCCCCGAAAACGC
1 CGCTAAAGAACAAGACCTTTAGCGGCGCTTTCCCCGAAAACGC
* * * *
45514362 CGTTAAAGAACAAGACTTTTAGCGGCGCTTTACCTGAAAACGC
1 CGCTAAAGAACAAGACCTTTAGCGGCGCTTTCCCCGAAAACGC
*
45514405 CGCTAAAGAGCAAGACCTTTAGCGGCG
1 CGCTAAAGAACAAGACCTTTAGCGGCG
45514432 TGTTTAGAGA
Statistics
Matches: 166, Mismatches: 31, Indels: 14
0.79 0.15 0.07
Matches are distributed among these distances:
42 36 0.22
43 94 0.57
44 2 0.01
48 2 0.01
49 32 0.19
ACGTcount: A:0.36, C:0.28, G:0.18, T:0.19
Consensus pattern (43 bp):
CGCTAAAGAACAAGACCTTTAGCGGCGCTTTCCCCGAAAACGC
Found at i:45515157 original size:2 final size:2
Alignment explanation
Indices: 45515150--45515176 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
45515140 CATAAAACTG
45515150 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
45515177 TGACAATCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:45517047 original size:26 final size:27
Alignment explanation
Indices: 45517005--45517055 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
45516995 AACTTATAGT
*
45517005 TTCTGGTCATTGTCGATTTCTAGCTTC
1 TTCTGGTCATCGTCGATTTCTAGCTTC
45517032 TTCTGG-CATCGTCGATTTCTAGCT
1 TTCTGGTCATCGTCGATTTCTAGCT
45517056 AAAATACAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 17 0.74
27 6 0.26
ACGTcount: A:0.12, C:0.24, G:0.20, T:0.45
Consensus pattern (27 bp):
TTCTGGTCATCGTCGATTTCTAGCTTC
Found at i:45517901 original size:108 final size:109
Alignment explanation
Indices: 45517626--45518078 Score: 791
Period size: 109 Copynumber: 4.2 Consensus size: 109
45517616 AATAGCGGCA
* * *
45517626 TTTTTACGAAAAACGCCACAAACTAATAATTTTTAGCAGATAAAATAAAAGATTTTTAGCATAAC
1 TTTTTACGAAAAACGCCGCAAACTAATAATTTTTAGCAAATAAAATAAAGGATTTTTAGCATAAC
* *
45517691 AAAATGACTTCGTTTTGTTCAAAATGAAATGATTTTTTGTGGCG
66 AAAACGACGTCGTTTTGTTCAAAATGAAATGATTTTTTGTGGCG
*
45517735 TTTTTACGAAAAACGCCTCAAACTAATAATTTTTAGCAAATAAAATAAAGGATTTTTAGCATAAC
1 TTTTTACGAAAAACGCCGCAAACTAATAATTTTTAGCAAATAAAATAAAGGATTTTTAGCATAAC
*
45517800 AAAATGACGTCGTTTTGTTCAAAATGAAATGATTTTTTGTGGCG
66 AAAACGACGTCGTTTTGTTCAAAATGAAATGATTTTTTGTGGCG
45517844 -TTTTACGAAAAACGCCGCAAACTAATAATTTTTAGCAAATAAAATAAAGGATTTTTAGCATAAC
1 TTTTTACGAAAAACGCCGCAAACTAATAATTTTTAGCAAATAAAATAAAGGATTTTTAGCATAAC
* *
45517908 AAAACGACATCGTTTTGTTCAAAATGAAATGATTTTTTGTAGCG
66 AAAACGACGTCGTTTTGTTCAAAATGAAATGATTTTTTGTGGCG
*
45517952 TTTTTACGAAAAACGCCGCAAACTAATAATTTTTAGCAGATAAAATAAAGGATTTTTAGCATAAC
1 TTTTTACGAAAAACGCCGCAAACTAATAATTTTTAGCAAATAAAATAAAGGATTTTTAGCATAAC
*
45518017 AAAACGACGTCGTTTTGTTCAAAATGAAATGCTTTTTTGTGGCG
66 AAAACGACGTCGTTTTGTTCAAAATGAAATGATTTTTTGTGGCG
*
45518061 TTTTTACGAAAAATGCCG
1 TTTTTACGAAAAACGCCG
45518079 GAAAAGGTAA
Statistics
Matches: 330, Mismatches: 13, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
108 104 0.32
109 226 0.68
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.34
Consensus pattern (109 bp):
TTTTTACGAAAAACGCCGCAAACTAATAATTTTTAGCAAATAAAATAAAGGATTTTTAGCATAAC
AAAACGACGTCGTTTTGTTCAAAATGAAATGATTTTTTGTGGCG
Found at i:45518002 original size:217 final size:218
Alignment explanation
Indices: 45517626--45518078 Score: 800
Period size: 217 Copynumber: 2.1 Consensus size: 218
45517616 AATAGCGGCA
* *
45517626 TTTTTACGAAAAACGCCACAAACTAATAATTTTTAGCAGATAAAATAAAAGATTTTTAGCATAAC
1 TTTTTACGAAAAACGCCGCAAACTAATAATTTTTAGCAAATAAAATAAAAGATTTTTAGCATAAC
* * * *
45517691 AAAATGACTTCGTTTTGTTCAAAATGAAATGATTTTTTGTGGCGTTTTTACGAAAAACGCCTCAA
66 AAAACGACATCGTTTTGTTCAAAATGAAATGATTTTTTGTAGCGTTTTTACGAAAAACGCCGCAA
*
45517756 ACTAATAATTTTTAGCAAATAAAATAAAGGATTTTTAGCATAACAAAATGACGTCGTTTTGTTCA
131 ACTAATAATTTTTAGCAAATAAAATAAAGGATTTTTAGCATAACAAAACGACGTCGTTTTGTTCA
45517821 AAATGAAATGATTTTTTGTGGCG
196 AAATGAAATGATTTTTTGTGGCG
*
45517844 -TTTTACGAAAAACGCCGCAAACTAATAATTTTTAGCAAATAAAATAAAGGATTTTTAGCATAAC
1 TTTTTACGAAAAACGCCGCAAACTAATAATTTTTAGCAAATAAAATAAAAGATTTTTAGCATAAC
45517908 AAAACGACATCGTTTTGTTCAAAATGAAATGATTTTTTGTAGCGTTTTTACGAAAAACGCCGCAA
66 AAAACGACATCGTTTTGTTCAAAATGAAATGATTTTTTGTAGCGTTTTTACGAAAAACGCCGCAA
*
45517973 ACTAATAATTTTTAGCAGATAAAATAAAGGATTTTTAGCATAACAAAACGACGTCGTTTTGTTCA
131 ACTAATAATTTTTAGCAAATAAAATAAAGGATTTTTAGCATAACAAAACGACGTCGTTTTGTTCA
*
45518038 AAATGAAATGCTTTTTTGTGGCG
196 AAATGAAATGATTTTTTGTGGCG
*
45518061 TTTTTACGAAAAATGCCG
1 TTTTTACGAAAAACGCCG
45518079 GAAAAGGTAA
Statistics
Matches: 223, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
217 207 0.93
218 16 0.07
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.34
Consensus pattern (218 bp):
TTTTTACGAAAAACGCCGCAAACTAATAATTTTTAGCAAATAAAATAAAAGATTTTTAGCATAAC
AAAACGACATCGTTTTGTTCAAAATGAAATGATTTTTTGTAGCGTTTTTACGAAAAACGCCGCAA
ACTAATAATTTTTAGCAAATAAAATAAAGGATTTTTAGCATAACAAAACGACGTCGTTTTGTTCA
AAATGAAATGATTTTTTGTGGCG
Found at i:45518542 original size:31 final size:30
Alignment explanation
Indices: 45518477--45518623 Score: 87
Period size: 31 Copynumber: 5.0 Consensus size: 30
45518467 ATAAAATTTA
*
45518477 ATAACCCATAAATCCCCCTAACCCTAAACCC
1 ATAACCCATAAATCCCCATAACCCTAAA-CC
*
45518508 ATAACCCCTAAATCCCCATAACCCTTGAAA-C
1 ATAACCCATAAATCCCCATAACCC-T-AAACC
**
45518539 ATAACCC-T-AA-CCCC-TAAAAC-ATAACC
1 ATAACCCATAAATCCCCATAACCCTA-AACC
* * *
45518565 CTAACCCCTAAATCCCCTTAACACCT-AACGC
1 ATAACCCATAAATCCCCATAAC-CCTAAAC-C
* * *
45518596 ATAACCCCTAAA-CCACAAAACCC-AAACC
1 ATAACCCATAAATCCCCATAACCCTAAACC
45518624 CTAAATCCAT
Statistics
Matches: 93, Mismatches: 11, Indels: 27
0.71 0.08 0.21
Matches are distributed among these distances:
24 1 0.01
25 2 0.02
26 7 0.08
27 5 0.05
28 7 0.08
29 11 0.12
30 13 0.14
31 43 0.46
32 1 0.01
33 3 0.03
ACGTcount: A:0.41, C:0.42, G:0.01, T:0.16
Consensus pattern (30 bp):
ATAACCCATAAATCCCCATAACCCTAAACC
Found at i:45518551 original size:20 final size:20
Alignment explanation
Indices: 45518535--45518576 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
45518525 ATAACCCTTG
45518535 AAACATAACCCTAACCCCTA
1 AAACATAACCCTAACCCCTA
45518555 AAACATAACCCTAACCCCTA
1 AAACATAACCCTAACCCCTA
45518575 AA
1 AA
45518577 TCCCCTTAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.48, C:0.38, G:0.00, T:0.14
Consensus pattern (20 bp):
AAACATAACCCTAACCCCTA
Found at i:45518879 original size:20 final size:18
Alignment explanation
Indices: 45518844--45518886 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
45518834 TAAAACTAAT
*
45518844 TAACCTAAACATAAACTC
1 TAACCTAAACATAAACCC
*
45518862 TAACCTAACCATTAAAACCC
1 TAACCTAAACA-T-AAACCC
45518882 TAACC
1 TAACC
45518887 CCTAAATCCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 10 0.48
19 1 0.05
20 10 0.48
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.21
Consensus pattern (18 bp):
TAACCTAAACATAAACCC
Found at i:45518917 original size:31 final size:30
Alignment explanation
Indices: 45518865--45518922 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
45518855 TAAACTCTAA
*
45518865 CCTAACCATTAAAACCCTAACCCCTAAATCC
1 CCTAACCATTAAAACCATAA-CCCTAAATCC
*
45518896 CCTAACC-TTAAATCCAATAACCCTAAA
1 CCTAACCATTAAAACC-ATAACCCTAAA
45518923 GCATAACACC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 14 0.58
31 10 0.42
ACGTcount: A:0.41, C:0.38, G:0.00, T:0.21
Consensus pattern (30 bp):
CCTAACCATTAAAACCATAACCCTAAATCC
Found at i:45518961 original size:21 final size:21
Alignment explanation
Indices: 45518895--45518964 Score: 63
Period size: 21 Copynumber: 3.3 Consensus size: 21
45518885 CCCCTAAATC
45518895 CCCT-AACCTTAAATCCAATAA
1 CCCTAAACCTTAAATCCAA-AA
* * * *
45518916 CCCTAAAGCATAACA-CCTAAC
1 CCCTAAACCTTAA-ATCCAAAA
*
45518937 CCCTAAACCTTAAATCCCAAA
1 CCCTAAACCTTAAATCCAAAA
45518958 CCCTAAA
1 CCCTAAA
45518965 TACATACCCC
Statistics
Matches: 38, Mismatches: 8, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
20 1 0.03
21 27 0.71
22 9 0.24
23 1 0.03
ACGTcount: A:0.43, C:0.37, G:0.01, T:0.19
Consensus pattern (21 bp):
CCCTAAACCTTAAATCCAAAA
Found at i:45519385 original size:114 final size:113
Alignment explanation
Indices: 45519179--45519451 Score: 388
Period size: 114 Copynumber: 2.4 Consensus size: 113
45519169 TAAATTATTT
* *
45519179 TAAATCCCTAAGCATTAGCGGCGTTTTCATAAAAACGCTGCTAAATCCCCGAAAGCACAGAAAAC
1 TAAATCCCTGAGCATTAGCGGCGTTTTC-TAAAAACGCCGCTAAATCCCCGAAAGCACAGAAAAC
* * *
45519244 GGCGCCGTTTGGCTTAGTTTTTCTTGCGGCGCTTTCCCAAAAATGCCGC
65 GGCGCCGTTGGGCTTAGTTTTTCTTGCGGCGCTTCCCCAAAAACGCCGC
* * *
45519293 TAAATCCCTGAGCATTAGCGGCGCTTTCTGAAAAACGCCGCTAATTCCCCGAAAGCTA-AGGAAA
1 TAAATCCCTGAGCATTAGCGGCGTTTTCT-AAAAACGCCGCTAAATCCCCGAAAGC-ACAGAAAA
*
45519357 CGGCGTCGTTGGGCTTAGGTTTTT-TTGCGGCGCTTCCCCAAAAACGCCGC
64 CGGCGCCGTTGGGCTTA-GTTTTTCTTGCGGCGCTTCCCCAAAAACGCCGC
* *
45519407 TAAAGCCATGAGCATTAGCGGCGTTTTCTCAAAAACGCCGCTAAA
1 TAAATCCCTGAGCATTAGCGGCGTTTTCT-AAAAACGCCGCTAAA
45519452 GCCCTGAGTA
Statistics
Matches: 142, Mismatches: 14, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
113 1 0.01
114 134 0.94
115 7 0.05
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (113 bp):
TAAATCCCTGAGCATTAGCGGCGTTTTCTAAAAACGCCGCTAAATCCCCGAAAGCACAGAAAACG
GCGCCGTTGGGCTTAGTTTTTCTTGCGGCGCTTCCCCAAAAACGCCGC
Found at i:45519428 original size:41 final size:41
Alignment explanation
Indices: 45519383--45519464 Score: 119
Period size: 41 Copynumber: 2.0 Consensus size: 41
45519373 AGGTTTTTTT
45519383 GCGGCGCTTCCCCAAAAACGCCGCTAAAGCCATGAGCATTA
1 GCGGCGCTTCCCCAAAAACGCCGCTAAAGCCATGAGCATTA
* * * * *
45519424 GCGGCGTTTTCTCAAAAACGCCGCTAAAGCCCTGAGTATTA
1 GCGGCGCTTCCCCAAAAACGCCGCTAAAGCCATGAGCATTA
45519465 AAGCCGCTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (41 bp):
GCGGCGCTTCCCCAAAAACGCCGCTAAAGCCATGAGCATTA
Found at i:45519476 original size:41 final size:41
Alignment explanation
Indices: 45519395--45519492 Score: 124
Period size: 41 Copynumber: 2.4 Consensus size: 41
45519385 GGCGCTTCCC
** * *
45519395 CAAAAACGCCGCTAAAGCCATGAGCATTAGCGGCGTTTTCT
1 CAAAAACGCCGCTAAAGCCATGAGCATTAAAGCCGCTTTCT
* *
45519436 CAAAAACGCCGCTAAAGCCCTGAGTATTAAAGCCGCTTTCT
1 CAAAAACGCCGCTAAAGCCATGAGCATTAAAGCCGCTTTCT
* *
45519477 TAAAAACGCCACTAAA
1 CAAAAACGCCGCTAAA
45519493 CACCCGAAAA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.35, C:0.28, G:0.17, T:0.20
Consensus pattern (41 bp):
CAAAAACGCCGCTAAAGCCATGAGCATTAAAGCCGCTTTCT
Found at i:45519564 original size:156 final size:155
Alignment explanation
Indices: 45519269--45519610 Score: 483
Period size: 156 Copynumber: 2.2 Consensus size: 155
45519259 AGTTTTTCTT
* * ** * *
45519269 GCGGCGCTTTCCCAAAAATGCCGCTAAATCCCTGAGCATTAGCGGCGCTTTCTGAAAAACGCCGC
1 GCGGCGCTTTCTCAAAAATGCCGCTAAAGCCCTGAGCATTAAAGCCGCTTTCTGAAAAACGCCAC
* *
45519334 TAATTCCCCGAAAGCTAAGGAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTCCCCAAA
66 TAATACCCCGAAAGCTAAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTCCCCAAA
45519399 AACGCCGCTAAAGCCATGAGCATTA
131 AACGCCGCTAAAGCCATGAGCATTA
* * * *
45519424 GCGGCGTTTTCTCAAAAACGCCGCTAAAGCCCTGAGTATTAAAGCCGCTTTCTTAAAAACGCCAC
1 GCGGCGCTTTCTCAAAAATGCCGCTAAAGCCCTGAGCATTAAAGCCGCTTTCTGAAAAACGCCAC
* *
45519489 TAA-ACACCCGAAAAGCTCAA-AAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCTC
66 TAATAC-CCCG-AAAGCT-AAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTCCCC
*
45519552 AAAAACGCCGCTAAAGCCCTGAGCATTA
128 AAAAACGCCGCTAAAGCCATGAGCATTA
* *
45519580 GCGGCGCTTCCTTAAAAATGCCGCT-AAGCCC
1 GCGGCGCTTTCTCAAAAATGCCGCTAAAGCCC
45519611 ACGAAAGCTC
Statistics
Matches: 165, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
154 1 0.01
155 68 0.41
156 94 0.57
157 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (155 bp):
GCGGCGCTTTCTCAAAAATGCCGCTAAAGCCCTGAGCATTAAAGCCGCTTTCTGAAAAACGCCAC
TAATACCCCGAAAGCTAAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGCGCTTCCCCAAA
AACGCCGCTAAAGCCATGAGCATTA
Found at i:45519668 original size:114 final size:113
Alignment explanation
Indices: 45519424--45519792 Score: 542
Period size: 114 Copynumber: 3.2 Consensus size: 113
45519414 ATGAGCATTA
* * ** *
45519424 GCGGCGTTTTCTCAAAAACGCCGCTAAAGCCCTGAGTATTAAAGCCGCTTTCTTAAAAACGCCAC
1 GCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGAATTAGCGGCGCTTTCTTAAAAACGCCAC
*
45519489 TAAACACCCGAAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGGTTTTTTT
66 TAAAC-CCCG-AAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTT
* * * *
45519539 GCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCTTAAAAATGCCGC
1 GCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGAATTAGCGGCGCTTTCTTAAAAACGCCAC
* *
45519604 TAAGCCCACGAAAGCTCAGAAAACAGCGTCGTTGGGCTTAGGTTTTTTT
66 TAAACCC-CGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTT
45519653 GCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGAATTAGCGGCGCTTTCTTAAAAACGCCAC
1 GCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGAATTAGCGGCGCTTTCTTAAAAACGCCAC
* * *
45519718 AAAATCCCCGAAAGCTCGGTAAACGGCGTCGTTGGGCTTAGG-TTTTTT
66 TAAA-CCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTT
**
45519766 GCGGCGCTTTCTGGAAAACGCCGCTAA
1 GCGGCGCTTTCTCAAAAACGCCGCTAA
45519793 TTATTATTTC
Statistics
Matches: 230, Mismatches: 22, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
113 31 0.13
114 133 0.58
115 66 0.29
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (113 bp):
GCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGAATTAGCGGCGCTTTCTTAAAAACGCCAC
TAAACCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTT
Found at i:45522985 original size:32 final size:33
Alignment explanation
Indices: 45522949--45523036 Score: 92
Period size: 33 Copynumber: 2.7 Consensus size: 33
45522939 AAAAATTCCG
*
45522949 GAAAATATTTT-CAGGAAATC-TGCCAAACAACA
1 GAAAATATTTTACAGCAAATCAT-CCAAACAACA
* *
45522981 GAAAATATTTTACA-CAGATTCATCCAAACACCA
1 GAAAATATTTTACAGCA-AATCATCCAAACAACA
* *
45523014 GAAAATATTTTCCAGTAAATCAT
1 GAAAATATTTTACAGCAAATCAT
45523037 TTTACAGAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
32 12 0.26
33 32 0.70
34 2 0.04
ACGTcount: A:0.45, C:0.19, G:0.09, T:0.26
Consensus pattern (33 bp):
GAAAATATTTTACAGCAAATCATCCAAACAACA
Found at i:45523069 original size:34 final size:35
Alignment explanation
Indices: 45523015--45523081 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
45523005 CAAACACCAG
*
45523015 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
45523050 AAAACATTTTCTAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
45523082 CATTTTACTA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Done.