Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60343961
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 596159 characters in sequence are not A, C, G, or T
File 16 of 204
Found at i:4834649 original size:51 final size:51
Alignment explanation
Indices: 4834588--4834688 Score: 121
Period size: 51 Copynumber: 2.0 Consensus size: 51
4834578 TCCAAGTCTT
* * ** *
4834588 AACGCCAGGGAGATAAGATTCGTTGCCCTCAGCTTTAATCTGCTCCACTAC
1 AACGCCAGGGAAACAAGATTCACTACCCTCAGCTTTAATCTGCTCCACTAC
* * * *
4834639 AACGCTAGGGAAACAAGATTCACTACCTTTAGCTTTAATCTGTTCCACTA
1 AACGCCAGGGAAACAAGATTCACTACCCTCAGCTTTAATCTGCTCCACTA
4834689 TAATGCCAAA
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
51 41 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.28
Consensus pattern (51 bp):
AACGCCAGGGAAACAAGATTCACTACCCTCAGCTTTAATCTGCTCCACTAC
Found at i:4835060 original size:45 final size:45
Alignment explanation
Indices: 4835007--4835102 Score: 192
Period size: 45 Copynumber: 2.1 Consensus size: 45
4834997 CTGATGCGAT
4835007 CTACTCTACTACACCTTTAGAGAGATAAGATCTTTTATTTTCAAC
1 CTACTCTACTACACCTTTAGAGAGATAAGATCTTTTATTTTCAAC
4835052 CTACTCTACTACACCTTTAGAGAGATAAGATCTTTTATTTTCAAC
1 CTACTCTACTACACCTTTAGAGAGATAAGATCTTTTATTTTCAAC
4835097 CTACTC
1 CTACTC
4835103 CACTGCTGCT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.38
Consensus pattern (45 bp):
CTACTCTACTACACCTTTAGAGAGATAAGATCTTTTATTTTCAAC
Found at i:4835293 original size:87 final size:87
Alignment explanation
Indices: 4835068--4835735 Score: 824
Period size: 87 Copynumber: 7.7 Consensus size: 87
4835058 TACTACACCT
* * * * *
4835068 TTAGAGAGATAAGATCTTTTATTTTCAACCTACTCCACTGCTGCTCAGGGAGACAAGGCTAGGGT
1 TTAGGGAGATAAGATCTGTAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAGGGT
* * * *
4835133 CTTTGATCTGCTTCACTGTCAG-
66 CTTCGATCTGCTCCACT-ACTGC
* *** ** * * ** * ** *
4835155 TACAAAAAGGCAAGATCTGTTATCTTTAACCTACT-CAGCTGCCACTGAGGGAGGCAAGGCTAGT
1 T-TAGGGAGATAAGATCTGTAATCTTCAACCTACTCCA-CTGCTGCTCAGGGAGATAAGGCTAGG
*
4835219 GTCTTCGATCTACTCCACTACTGC
64 GTCTTCGATCTGCTCCACTACTGC
* * * * *
4835243 TTAGGGAGATGAGATCTGTAATCTTCAACCTACTCCACTGTTGCTCAGGGAGATAAGGATGGGGA
1 TTAGGGAGATAAGATCTGTAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAGGGT
4835308 CTTCGATCTGCTCCACTACTGC
66 CTTCGATCTGCTCCACTACTGC
* * *
4835330 TTAGGGAGATAAGATCTGTAATTTTCAACCTCCTCCACTGCTGCTCAGAGAGAT-AGGCT-GGGC
1 TTAGGGAGATAAGATCTGTAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAGGG-
* *
4835393 TTTTCGATCTGCTCTACTACTGC
65 TCTTCGATCTGCTCCACTACTGC
* * * *
4835416 TTAGGGAGATAAGATCTGTAATCTTCAACCTACTCCACTGCTGCTCAGGGAGACAATGTTGGGGT
1 TTAGGGAGATAAGATCTGTAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAGGGT
4835481 CTTCGATCTGCTCCACTACTGC
66 CTTCGATCTGCTCCACTACTGC
* * *
4835503 TTAGGGAGATAAGATCTGTAATCTTCAACCTACTCCACTACTCCTCAGGGAAATAAGGCTAGGGT
1 TTAGGGAGATAAGATCTGTAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAGGGT
*
4835568 CTTCGATCTACTCCACTACTGC
66 CTTCGATCTGCTCCACTACTGC
* * * *
4835590 TTAGGGAGATAAGATCTATAATCTTCAACCTACACTACTGCTGCTCAGGGAGATAAGGCTAGGGA
1 TTAGGGAGATAAGATCTGTAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAGGGT
4835655 CTTCGATCTGCTCCACTACTGC
66 CTTCGATCTGCTCCACTACTGC
* * *
4835677 TTAGGGAGATAAGATCTGTAATTTTTAACCTACTCCACTACTGCTCAGGGAGAT-AGGCT
1 TTAGGGAGATAAGATCTGTAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCT
4835736 GGAGTTTCAT
Statistics
Matches: 497, Mismatches: 77, Indels: 15
0.84 0.13 0.03
Matches are distributed among these distances:
85 3 0.01
86 79 0.16
87 347 0.70
88 68 0.14
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (87 bp):
TTAGGGAGATAAGATCTGTAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTAGGGT
CTTCGATCTGCTCCACTACTGC
Found at i:4835425 original size:42 final size:43
Alignment explanation
Indices: 4835222--4835738 Score: 233
Period size: 44 Copynumber: 11.9 Consensus size: 43
4835212 GGCTAGTGTC
* * * *
4835222 TTCGATCTACTCCACTACTGCTTAGGGAGATGAGATCTGTAATC
1 TTCGATCTGCTCCACTACTGCTTAGGGAGAT-AGAGCTGGAATT
* * * ** * * * *
4835266 TTCAACCTACTCCACTGTTGCTCAGGGAGATA-AGGATGGGGA-C
1 TTCGATCTGCTCCACTACTGCTTAGGGAGATAGA-GCT-GGAATT
* *
4835309 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATT
1 TTCGATCTGCTCCACTACTGCTTAGGGAGAT-AGAGCTGGAATT
* * * * * * **
4835353 TTCAACCTCCTCCACTGCTGCTCAGAGAGATAG-GCTGGGCTT
1 TTCGATCTGCTCCACTACTGCTTAGGGAGATAGAGCTGGAATT
* * * *
4835395 TTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGTAATC
1 TTCGATCTGCTCCACTACTGCTTAGGGAGAT-AGAGCTGGAATT
* * * * * * * ** *
4835439 TTCAACCTACTCCACTGCTGCTCAGGGAGACA-ATGTTGGGGTC
1 TTCGATCTGCTCCACTACTGCTTAGGGAGATAGA-GCTGGAATT
* * *
4835482 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATC
1 TTCGATCTGCTCCACTACTGCTTAGGGAGAT-AGAGCTGGAATT
* * * * * * * *
4835526 TTCAACCTACTCCACTACTCCTCAGGGAAATA-AGGCTAGG-GTC
1 TTCGATCTGCTCCACTACTGCTTAGGGAGATAGA-GCT-GGAATT
* * ** *
4835569 TTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTATAATC
1 TTCGATCTGCTCCACTACTGCTTAGGGAGAT-AGAGCTGGAATT
* * * * * * * * *
4835613 TTCAACCTACACTACTGCTGCTCAGGGAGATA-AGGCTAGGGA-C
1 TTCGATCTGCTCCACTACTGCTTAGGGAGATAGA-GCT-GGAATT
* *
4835656 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATT
1 TTCGATCTGCTCCACTACTGCTTAGGGAGAT-AGAGCTGGAATT
** * * *
4835700 TTTAACCTACTCCACTACTGCTCAGGGAGATAG-GCTGGA
1 TTCGATCTGCTCCACTACTGCTTAGGGAGATAGAGCTGGA
4835739 GTTTCATCGG
Statistics
Matches: 342, Mismatches: 111, Indels: 42
0.69 0.22 0.08
Matches are distributed among these distances:
42 37 0.11
43 127 0.37
44 174 0.51
45 4 0.01
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (43 bp):
TTCGATCTGCTCCACTACTGCTTAGGGAGATAGAGCTGGAATT
Found at i:4835500 original size:260 final size:261
Alignment explanation
Indices: 4835068--4835729 Score: 821
Period size: 260 Copynumber: 2.5 Consensus size: 261
4835058 TACTACACCT
* * * * * * * *
4835068 TTAGAGAGATAAGATCTTTTATTTTCAACCTACTCCACTGCTGCTCAGGGAGACAAGGCTAGGGT
1 TTAGGGAGATAAGATCTATAATCTTCAACCTACACCACTGCTGCTCAGAGAGATAAGGCTAGGGA
* * * * * *** ** *
4835133 CTTTGATCTGCTTCACTGTCAG-TACAAAAAGGCAAGATCTGTTATCTTTAACCTACT-CAGCTG
66 CTTCGATCTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTGTAATCTTTAACCTACTCCA-CTG
** * * * *
4835196 CCACTGAGGGAGGCAAGGCTAGTGTCTTCGATCTACTCCACTACTGCTTAGGGAGATGAGATCTG
128 CTGCTCAGGGAGACAAGGCTAGGGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTG
** * * * *
4835261 TAATCTTCAACCTACTCCACTGTTGCTCAGGGAGATAAGGATGGGGACTTCGATCTGCTCCACTA
193 TAATCTTCAACCTACTCCACTACTCCTCAGGGAAATAAGGATAGGGACTTCGATCTACTCCACTA
4835326 CTGC
258 CTGC
* * * *
4835330 TTAGGGAGATAAGATCTGTAATTTTCAACCTCCTCCACTGCTGCTCAGAGAGAT-AGGCT-GGG-
1 TTAGGGAGATAAGATCTATAATCTTCAACCTACACCACTGCTGCTCAGAGAGATAAGGCTAGGGA
* *
4835392 CTTTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAACCTACTCCACTGC
66 C--TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTAACCTACTCCACTGC
* * * *
4835457 TGCTCAGGGAGACAATGTTGGGGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT
129 TGCTCAGGGAGACAAGGCTAGGGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGT
* *
4835522 AATCTTCAACCTACTCCACTACTCCTCAGGGAAATAAGGCTAGGGTCTTCGATCTACTCCACTAC
194 AATCTTCAACCTACTCCACTACTCCTCAGGGAAATAAGGATAGGGACTTCGATCTACTCCACTAC
4835587 TGC
259 TGC
* *
4835590 TTAGGGAGATAAGATCTATAATCTTCAACCTACACTACTGCTGCTCAGGGAGATAAGGCTAGGGA
1 TTAGGGAGATAAGATCTATAATCTTCAACCTACACCACTGCTGCTCAGAGAGATAAGGCTAGGGA
* *
4835655 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTTAACCTACTCCACTACTG
66 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTAACCTACTCCACTGCTG
4835720 CTCAGGGAGA
131 CTCAGGGAGA
4835730 TAGGCTGGAG
Statistics
Matches: 346, Mismatches: 47, Indels: 15
0.85 0.12 0.04
Matches are distributed among these distances:
259 1 0.00
260 197 0.57
261 96 0.28
262 51 0.15
263 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.29
Consensus pattern (261 bp):
TTAGGGAGATAAGATCTATAATCTTCAACCTACACCACTGCTGCTCAGAGAGATAAGGCTAGGGA
CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTAACCTACTCCACTGCTG
CTCAGGGAGACAAGGCTAGGGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAA
TCTTCAACCTACTCCACTACTCCTCAGGGAAATAAGGATAGGGACTTCGATCTACTCCACTACTG
C
Found at i:4835637 original size:347 final size:348
Alignment explanation
Indices: 4835068--4835737 Score: 961
Period size: 347 Copynumber: 1.9 Consensus size: 348
4835058 TACTACACCT
* * *
4835068 TTAGAGAGATAAGATCTTTTATTTTCAACCTACTCCACTGCTGCTCAGGGAGACAAGGCTAGGGT
1 TTAGAGAGATAAGATCTGTAATCTTCAACCTACTCCACTGCTGCTCAGGGAGACAAGGCTAGGGT
* * * * * * *
4835133 CTTTGATCTGCTTCACTGTCAGTACAAAAAGGCAAGATCTGTTATCTTTAACCTACTCAGCTGCC
66 CTTCGATCTGCTCCACTGACAGTACAAAAAGACAAGATCTGTAATCTTCAACCTACTCAGCTACC
* ** * * *
4835198 ACTGAGGGAGGCAAGGCTAGTGTCTTCGATCTACTCCACTACTGCTTAGGGAGATGAGATCTGTA
131 ACTCAGGGAAACAAGGCTAGGGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTATA
* * *
4835263 ATCTTCAACCTACTCCACTGTTGCTCAGGGAGATAAGGATGGGGACTTCGATCTGCTCCACTACT
196 ATCTTCAACCTACACCACTGCTGCTCAGGGAGATAAGGATAGGGACTTCGATCTGCTCCACTACT
* *
4835328 GCTTAGGGAGATAAGATCTGTAATTTTCAACCTCCTCCACTGCTGCTCAGAGAGATAGGCTGGGC
261 GCTTAGGGAGATAAGATCTGTAATTTTCAACCTACTCCACTACTGCTCAGAGAGATAGGCTGGGC
4835393 TTTTCGATCTGCTCTACTACTGC
326 TTTTCGATCTGCTCTACTACTGC
* * * *
4835416 TTAGGGAGATAAGATCTGTAATCTTCAACCTACTCCACTGCTGCTCAGGGAGACAATGTTGGGGT
1 TTAGAGAGATAAGATCTGTAATCTTCAACCTACTCCACTGCTGCTCAGGGAGACAAGGCTAGGGT
* * *** *
4835481 CTTCGATCTGCTCCACT-ACTGCT-TAGGGAGATAAGATCTGTAATCTTCAACCTACTCCA-CTA
66 CTTCGATCTGCTCCACTGACAG-TACAAAAAGACAAGATCTGTAATCTTCAACCTACT-CAGCTA
*
4835543 CTC-CTCAGGGAAATAAGGCTAGGGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCT
129 C-CACTCAGGGAAACAAGGCTAGGGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCT
* *
4835607 ATAATCTTCAACCTACACTACTGCTGCTCAGGGAGATAAGGCTAGGGACTTCGATCTGCTCCACT
193 ATAATCTTCAACCTACACCACTGCTGCTCAGGGAGATAAGGATAGGGACTTCGATCTGCTCCACT
* *
4835672 ACTGCTTAGGGAGATAAGATCTGTAATTTTTAACCTACTCCACTACTGCTCAGGGAGATAGGCTG
258 ACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTACTCCACTACTGCTCAGAGAGATAGGCTG
4835737 G
323 G
4835738 AGTTTCATCG
Statistics
Matches: 283, Mismatches: 36, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
347 206 0.73
348 77 0.27
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (348 bp):
TTAGAGAGATAAGATCTGTAATCTTCAACCTACTCCACTGCTGCTCAGGGAGACAAGGCTAGGGT
CTTCGATCTGCTCCACTGACAGTACAAAAAGACAAGATCTGTAATCTTCAACCTACTCAGCTACC
ACTCAGGGAAACAAGGCTAGGGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTATA
ATCTTCAACCTACACCACTGCTGCTCAGGGAGATAAGGATAGGGACTTCGATCTGCTCCACTACT
GCTTAGGGAGATAAGATCTGTAATTTTCAACCTACTCCACTACTGCTCAGAGAGATAGGCTGGGC
TTTTCGATCTGCTCTACTACTGC
Found at i:4842833 original size:28 final size:28
Alignment explanation
Indices: 4842779--4842833 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 28
4842769 ATTTTTATTT
**
4842779 TTTTAAAAAAACAAAAATTAGTTGTCGA
1 TTTTAAAAAAACAAAAATTAGGAGTCGA
** *
4842807 TTTTAAAAAATGAAAAATTGGGAGTCG
1 TTTTAAAAAAACAAAAATTAGGAGTCG
4842834 CCACCAATCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.47, C:0.05, G:0.16, T:0.31
Consensus pattern (28 bp):
TTTTAAAAAAACAAAAATTAGGAGTCGA
Found at i:4848007 original size:26 final size:25
Alignment explanation
Indices: 4847961--4848023 Score: 58
Period size: 26 Copynumber: 2.5 Consensus size: 25
4847951 AAATTATACA
* *
4847961 AAAAGATAATTAGATGAATAATATCAT
1 AAAA-ATAATTAAATGAATAA-AACAT
4847988 AAAAATAATTAAAT-ACATAAAACAT
1 AAAAATAATTAAATGA-ATAAAACAT
*
4848013 -TAAATAATTAA
1 AAAAATAATTAA
4848024 CTGAGCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
24 10 0.31
25 5 0.16
26 13 0.41
27 4 0.12
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.29
Consensus pattern (25 bp):
AAAAATAATTAAATGAATAAAACAT
Found at i:4849578 original size:93 final size:92
Alignment explanation
Indices: 4849441--4849641 Score: 212
Period size: 93 Copynumber: 2.2 Consensus size: 92
4849431 AGTCCATATC
* * * * * * *
4849441 TTTTTCACTCAATTAGATACTTGAACGTTCACAATATAT-CAAAAAGA-CTCTCAAAATTTTTCA
1 TTTTTCACTCAATTGGATACTTAAACGTTCAAAATACATAAAAAAAAAGCCCTCAAAATTTTTC-
*
4849504 AAAAAAAAAGCAATTAAGCCCCTG-CTTTTT
65 ---AAAAAAGCAATGAAGCCCCTGTCTTTTT
* *
4849534 TTTTTCACTCAATTGGATACTTAAAC-TATCAAAATGCATAAAAAAAAAGCCCTCAAACTTTTTC
1 TTTTTCACTCAATTGGATACTTAAACGT-TCAAAATACATAAAAAAAAAGCCCTCAAAATTTTTC
* *
4849598 AAAAAAGCAATGAAGGCCCTGTTTTTTT
65 AAAAAAGCAATGAAGCCCCTGTCTTTTT
4849626 TTTTTGCACTCAATTG
1 TTTTT-CACTCAATTG
4849642 TCAAAAAATA
Statistics
Matches: 91, Mismatches: 12, Indels: 10
0.81 0.11 0.09
Matches are distributed among these distances:
91 19 0.21
92 11 0.12
93 42 0.46
94 6 0.07
95 13 0.14
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (92 bp):
TTTTTCACTCAATTGGATACTTAAACGTTCAAAATACATAAAAAAAAAGCCCTCAAAATTTTTCA
AAAAAGCAATGAAGCCCCTGTCTTTTT
Found at i:4849867 original size:37 final size:37
Alignment explanation
Indices: 4849813--4849887 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
4849803 AAGTTATTAA
*
4849813 ATTTTAATAAAAATATAAGAAATATTTATCTATTATT
1 ATTTTAATAAAAATATAACAAATATTTATCTATTATT
* * *
4849850 ATTTTAATAAAAGTATAACAAATATTTATTTTTTATT
1 ATTTTAATAAAAATATAACAAATATTTATCTATTATT
4849887 A
1 A
4849888 AAAAATAGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.48
Consensus pattern (37 bp):
ATTTTAATAAAAATATAACAAATATTTATCTATTATT
Found at i:4849939 original size:39 final size:40
Alignment explanation
Indices: 4849896--4850030 Score: 129
Period size: 39 Copynumber: 3.5 Consensus size: 40
4849886 TAAAAAATAG
4849896 AAAAAGATTACAAAAATTGTAAAATTTTATAAAATTC-TA
1 AAAAAGATTACAAAAATTGTAAAATTTTATAAAATTCGTA
* * * *
4849935 AAAAAAATT-CTAAAATATATAAAATTTTAT-AAAGTCGTA
1 AAAAAGATTACAAAAAT-TGTAAAATTTTATAAAATTCGTA
**
4849974 AGAAAATGATTA-AAAAA-TGTAAAAAATTATAAAATTCGTA
1 A-AAAA-GATTACAAAAATTGTAAAATTTTATAAAATTCGTA
* *
4850014 AAAGA-ATTATAAAAATT
1 AAAAAGATTACAAAAATT
4850031 ATCATATCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 16
0.74 0.11 0.15
Matches are distributed among these distances:
37 4 0.05
38 16 0.21
39 37 0.48
40 13 0.17
41 7 0.09
ACGTcount: A:0.59, C:0.04, G:0.07, T:0.31
Consensus pattern (40 bp):
AAAAAGATTACAAAAATTGTAAAATTTTATAAAATTCGTA
Found at i:4850220 original size:18 final size:18
Alignment explanation
Indices: 4850174--4850221 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 18
4850164 TTTCTGATGC
4850174 ATTTTATAATTTTTTTATAAG
1 ATTTTAT-A-TTTTTTAT-AG
4850195 ATTTTATATTTTTTAT-G
1 ATTTTATATTTTTTATAG
4850212 ATTTATATAT
1 ATTT-TATAT
4850222 ATTTCTAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
17 5 0.19
18 5 0.19
19 8 0.31
20 1 0.04
21 7 0.27
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (18 bp):
ATTTTATATTTTTTATAG
Found at i:4850249 original size:28 final size:27
Alignment explanation
Indices: 4850175--4850255 Score: 69
Period size: 28 Copynumber: 2.9 Consensus size: 27
4850165 TTCTGATGCA
*
4850175 TTTTATAATTTTTTTATAAGATTTTATATT
1 TTTTATAA-TTTTTTAT-ATATTTTATA-T
* *
4850205 TTTTATGA-TTTATATATATTTCTA-AT
1 TTTTATAATTTTTTATATATTT-TATAT
4850231 TTTTAATAATTTTTTATAT-TTTTAT
1 TTTT-ATAATTTTTTATATATTTTAT
4850256 TAAAGTTTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 11
0.72 0.09 0.19
Matches are distributed among these distances:
26 7 0.17
27 12 0.29
28 16 0.38
30 7 0.17
ACGTcount: A:0.30, C:0.01, G:0.02, T:0.67
Consensus pattern (27 bp):
TTTTATAATTTTTTATATATTTTATAT
Found at i:4850284 original size:20 final size:19
Alignment explanation
Indices: 4850231--4850284 Score: 54
Period size: 20 Copynumber: 2.8 Consensus size: 19
4850221 TATTTCTAAT
* * *
4850231 TTTTAATAATTTTTTATAT
1 TTTTATTAATTTTTAATAC
**
4850250 TTTTATTAAAGTTTAATCAC
1 TTTTATTAATTTTTAAT-AC
4850270 TTTTATTAATTTTTA
1 TTTTATTAATTTTTA
4850285 TTTTTCATAA
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
19 13 0.48
20 14 0.52
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (19 bp):
TTTTATTAATTTTTAATAC
Found at i:4850538 original size:87 final size:86
Alignment explanation
Indices: 4850447--4850626 Score: 204
Period size: 85 Copynumber: 2.1 Consensus size: 86
4850437 GCTCTCTCTC
* * * *
4850447 TTTTTTTGAAAACTTTTGAGGGT-CTTTTTAATGTATTTCGACAGT-TCAAGTACTCAATTGAGT
1 TTTTTTTGAAAA--TTTGA-GGTCCTTTTTAATGCATTTCGA-AATATCAAATACCCAATTGAGT
*
4850510 GTAAAAAAAAA-AGCTTAATTGTTT
62 GCAAAAAAAAAGAGCTTAATTGTTT
** * *
4850534 TTTTTTTTTAAATTTGAGTTCCTTTTTAATGCATTTTGAAATATCAAATACCCAATTGAGTGCAA
1 TTTTTTTGAAAATTTGAGGTCCTTTTTAATGCATTTCGAAATATCAAATACCCAATTGAGTGCAA
*
4850599 AAAAAAAGGAGTTTAATTGTTT
66 AAAAAAA-GAGCTTAATTGTTT
4850621 TTTTTT
1 TTTTTT
4850627 AATTTTGAGG
Statistics
Matches: 79, Mismatches: 10, Indels: 8
0.81 0.10 0.08
Matches are distributed among these distances:
84 4 0.05
85 47 0.59
87 28 0.35
ACGTcount: A:0.32, C:0.09, G:0.14, T:0.45
Consensus pattern (86 bp):
TTTTTTTGAAAATTTGAGGTCCTTTTTAATGCATTTCGAAATATCAAATACCCAATTGAGTGCAA
AAAAAAAGAGCTTAATTGTTT
Found at i:4850739 original size:15 final size:13
Alignment explanation
Indices: 4850714--4850747 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
4850704 ATGATTTGTG
4850714 TATTTTTTTTTAAA
1 TATTTTTTTTT-AA
4850728 TATTTATTTTTTAA
1 TATTT-TTTTTTAA
4850742 TATTTT
1 TATTTT
4850748 ACTATTAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 1 0.05
14 12 0.63
15 6 0.32
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (13 bp):
TATTTTTTTTTAA
Found at i:4851541 original size:2 final size:2
Alignment explanation
Indices: 4851525--4851560 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
4851515 ATTAAACGTT
4851525 TA TA -A TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4851561 GCTTGAGCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 2 0.06
2 30 0.94
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:4855848 original size:22 final size:22
Alignment explanation
Indices: 4855816--4855857 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
4855806 AACCAAATAG
* * *
4855816 AATGCTGATTGTACGGCCACAT
1 AATGCTAATTGCACCGCCACAT
4855838 AATGCTAATTGCACCGCCAC
1 AATGCTAATTGCACCGCCAC
4855858 GTGTGTATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.24
Consensus pattern (22 bp):
AATGCTAATTGCACCGCCACAT
Found at i:4856406 original size:9 final size:9
Alignment explanation
Indices: 4856368--4856447 Score: 69
Period size: 9 Copynumber: 9.2 Consensus size: 9
4856358 TCACATCAAC
*
4856368 AATTATTTA
1 AATTATTAA
* *
4856377 ATTTTTTAA
1 AATTATTAA
*
4856386 AATTA-AAA
1 AATTATTAA
4856394 AATTATTAA
1 AATTATTAA
4856403 AATTATTAA
1 AATTATTAA
*
4856412 AATAATTAA
1 AATTATTAA
*
4856421 AA-AATGTAA
1 AATTAT-TAA
4856430 AATTA-T-A
1 AATTATTAA
4856437 AATTATTAA
1 AATTATTAA
4856446 AA
1 AA
4856448 AGTATAAAAA
Statistics
Matches: 57, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
7 6 0.11
8 12 0.21
9 38 0.67
10 1 0.02
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.41
Consensus pattern (9 bp):
AATTATTAA
Found at i:4856424 original size:20 final size:20
Alignment explanation
Indices: 4856387--4856425 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
4856377 ATTTTTTAAA
*
4856387 ATTAAAAAATTATTAAAATT
1 ATTAAAAAATTATAAAAATT
4856407 ATTAAAATAATTA-AAAAAT
1 ATTAAAA-AATTATAAAAAT
4856426 GTAAAATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (20 bp):
ATTAAAAAATTATAAAAATT
Found at i:4858948 original size:25 final size:23
Alignment explanation
Indices: 4858920--4858997 Score: 77
Period size: 24 Copynumber: 3.2 Consensus size: 23
4858910 CATATAAACA
4858920 GGAAGCTCATGCGAGCCATGTAACG
1 GGAAGCTCAT-CGAGCCAT-TAACG
*
4858945 GGAAGCTCCA-CAAAGCCATTAACG
1 GGAAGCT-CATC-GAGCCATTAACG
* *
4858969 GGAAGCTCATAAGAGCCAATAACG
1 GGAAGCTCAT-CGAGCCATTAACG
4858993 GGAAG
1 GGAAG
4858998 GTTCAAGCAA
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
23 2 0.04
24 28 0.62
25 13 0.29
26 2 0.04
ACGTcount: A:0.36, C:0.23, G:0.28, T:0.13
Consensus pattern (23 bp):
GGAAGCTCATCGAGCCATTAACG
Found at i:4858972 original size:24 final size:24
Alignment explanation
Indices: 4858932--4858997 Score: 89
Period size: 24 Copynumber: 2.7 Consensus size: 24
4858922 AAGCTCATGC
4858932 GAGCCATGTAACGGGAAGCTCCACAA
1 GAGCCAT-TAACGGGAAGCT-CACAA
*
4858958 -AGCCATTAACGGGAAGCTCATAA
1 GAGCCATTAACGGGAAGCTCACAA
*
4858981 GAGCCAATAACGGGAAG
1 GAGCCATTAACGGGAAG
4858998 GTTCAAGCAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
23 4 0.11
24 27 0.73
25 6 0.16
ACGTcount: A:0.38, C:0.23, G:0.27, T:0.12
Consensus pattern (24 bp):
GAGCCATTAACGGGAAGCTCACAA
Found at i:4859583 original size:11 final size:11
Alignment explanation
Indices: 4859567--4859594 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
4859557 TATTCGAATG
4859567 AATTTAACATA
1 AATTTAACATA
4859578 AATTTAACATA
1 AATTTAACATA
4859589 AATTTA
1 AATTTA
4859595 TATTCAATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (11 bp):
AATTTAACATA
Found at i:4861385 original size:28 final size:27
Alignment explanation
Indices: 4861310--4861385 Score: 64
Period size: 30 Copynumber: 2.7 Consensus size: 27
4861300 TTTGTTACTA
* *
4861310 TTTTATT-ATTATGTTGCTATAATTTTG
1 TTTTATTGTTTATATTG-TATAATTTTG
*
4861337 TTGTTATTGTTAGGATATTGTATAACTTTTG
1 TT-TTATTGTT--TATATTGTATAA-TTTTG
*
4861368 TTTTATTGTTTATTTTGT
1 TTTTATTGTTTATATTGT
4861386 TACTATTTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
27 2 0.05
28 11 0.28
29 1 0.03
30 13 0.33
31 12 0.31
ACGTcount: A:0.20, C:0.03, G:0.14, T:0.63
Consensus pattern (27 bp):
TTTTATTGTTTATATTGTATAATTTTG
Found at i:4864259 original size:66 final size:65
Alignment explanation
Indices: 4864167--4864298 Score: 221
Period size: 66 Copynumber: 2.0 Consensus size: 65
4864157 CGTCTGGTGC
4864167 GGTGGCTACGACCGGGCCTTCACTAGACCCATGGCCGGATTGTTTTGGAGAGTGAGG-AGGAAAG
1 GGTGGCTACGACCGGGCCTTCACTAGACCCATGGCCGGATTGTTTTGGAGAGTG-GGAAGGAAAG
4864231 A
65 A
* *
4864232 GGTGGCTACGACTGGAGCCTTCACTAGACCCATGGCCGTATTGTTTTGGAGAGTGGGAAGGAAAG
1 GGTGGCTACGACCGG-GCCTTCACTAGACCCATGGCCGGATTGTTTTGGAGAGTGGGAAGGAAAG
4864297 A
65 A
4864298 G
1 G
4864299 AGAATTTTTT
Statistics
Matches: 63, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
65 16 0.25
66 47 0.75
ACGTcount: A:0.23, C:0.19, G:0.36, T:0.21
Consensus pattern (65 bp):
GGTGGCTACGACCGGGCCTTCACTAGACCCATGGCCGGATTGTTTTGGAGAGTGGGAAGGAAAGA
Found at i:4864889 original size:7 final size:7
Alignment explanation
Indices: 4864877--4864905 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
4864867 ATTATATCAT
4864877 TTTATTA
1 TTTATTA
4864884 TTTATTA
1 TTTATTA
4864891 TTTATTA
1 TTTATTA
4864898 TTTATTA
1 TTTATTA
4864905 T
1 T
4864906 GTCCTTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
TTTATTA
Found at i:4865018 original size:14 final size:13
Alignment explanation
Indices: 4864926--4865011 Score: 52
Period size: 14 Copynumber: 6.5 Consensus size: 13
4864916 ACCTTCAAAG
*
4864926 TATTACTATTACTA
1 TATTATTATTA-TA
* *
4864940 TATTTTTTTTATA
1 TATTATTATTATA
4864953 T-TTACTTATT-TA
1 TATTA-TTATTATA
* *
4864965 AATT-TTAATATA
1 TATTATTATTATA
* *
4864977 TTTGTCTTATTATA
1 TAT-TATTATTATA
4864991 TATTATTATTATA
1 TATTATTATTATA
4865004 TAATTATT
1 T-ATTATT
4865012 TATATATCTT
Statistics
Matches: 54, Mismatches: 12, Indels: 12
0.69 0.15 0.15
Matches are distributed among these distances:
11 4 0.07
12 7 0.13
13 20 0.37
14 23 0.43
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.62
Consensus pattern (13 bp):
TATTATTATTATA
Found at i:4866414 original size:44 final size:44
Alignment explanation
Indices: 4866303--4867507 Score: 522
Period size: 44 Copynumber: 27.7 Consensus size: 44
4866293 AATCCCTCGG
* * * * *
4866303 TCTGTTCCACTGTAATCTCAGGGAGATAAGA-C-CTGA-TGCGA
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGATCTATTATTTCAA
* ** * *
4866344 TCTACTCTGCTGTAA-CTTCAGAGAGATAAGATCCT-TTATTTTAA
1 TCTGCTCCACTGTAATC-TCAGGGAGATAAGAT-CTATTATTTCAA
* * * * *
4866388 TCCGCTCCACTGTAATCTCAGGGAGATAGGAT-TACTAGCTTCGA
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGATCTATTA-TTTCAA
* * * ** *
4866432 TCTGCTCCGCTATAATCTCAGGGAGATAAGACCTGGTA---CGA
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGATCTATTATTTCAA
* * * * *
4866473 TCTACTCTACTGTAA-CTTCAGAGAGATAAGATC-ATTGGTTTTAA
1 TCTGCTCCACTGTAATC-TCAGGGAGATAAGATCTATT-ATTTCAA
* * * * *
4866517 TCTGCTCCACTGTAATATCAGGGAGATAGGAT-TACTAGCTTCGA
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGATCTATTA-TTTCAA
* * * *
4866561 TCTGTTCCACTGTAATCTCAAGGAGATAAGATCT-TTGGTTTTAA
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGATCTATT-ATTTCAA
* * * * * * * *
4866605 TCCGCTCTACCGTAATATCAGGGAGATAGGAT-TACTAGCTTCGA
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGATCTATTA-TTTCAA
* * *
4866649 TTTGCTCCACTGTAATCTCAGGGAGATAAGACCTGTTA---CAA
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGATCTATTATTTCAA
* * * * * *
4866690 TCTACTCTACTGTAA-CTTCAGAGAGATAATATC-ATTGGTTTTAA
1 TCTGCTCCACTGTAATC-TCAGGGAGATAAGATCTATT-ATTTCAA
** * * * * *
4866734 TCCACTCCACTGTAATATCAGGGAGATAGGAT-TACTAGCTTCGA
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGATCTATTA-TTTCAA
* * * *
4866778 TTTGCTCCACTGTAATCTCAGGGAGAT-AGAAT-TACTAGCTTCGA
1 TCTGCTCCACTGTAATCTCAGGGAGATAAG-ATCTATTA-TTTCAA
* * * ** *
4866822 TCTGCTCCACTGTAATATAAGGGAGATAAGACCTGGTA---CGA
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGATCTATTATTTCAA
* * * *
4866863 TCTACTCTACTGTAA-CTTCAGAGAGATAAGATC-ATTGATTTTAA
1 TCTGCTCCACTGTAATC-TCAGGGAGATAAGATCTATT-ATTTCAA
* * * * * * *
4866907 TCCGCTCCACTATAATATCAGGGAGATAGGAT-TACTAGCTTCGA
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGATCTATTA-TTTCAA
* *
4866951 TCTGCTCCACTGTAATCTCAGGGAGATAAGATCT-TTGGTTTTAA
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGATCTATT-ATTTCAA
* * * *
4866995 TCTGCTCCACTGTAATATCAGGGAGATAGGAT-TACTAGCTTCAA
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGATCTATTA-TTTCAA
* * ** **
4867039 TCTGCTCCGCTGTAATCTTAGGGAGATAAGATCTAAAATTCTTCGG
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGATCTATTA-T-TTCAA
* * * ** * *
4867085 TCTGTTCCACTGTAATCTCAGGGAAATAAGA-C--CTGGTGCGA
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGATCTATTATTTCAA
* * * ** *
4867126 TCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TGGTTTTAA
1 TCTGCTCCACTGTAATC-TCAGGGAGATAAGAT-CTATTATTTCAA
* * * * * *
4867170 TCCGGTCCACTGTAATATCAGGGAGATAGGAT-TACTAGCTTCAA
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGATCTATTA-TTTCAA
* * *
4867214 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT-TTGGTTTTAA
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGATCTATT-ATTTCAA
* * * * * *
4867258 TCCGCTCCACTGTAATATCAGGGAGATAGGAT-TACTAGCTTCGA
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGATCTATTA-TTTCAA
* * * *
4867302 TCTACTCTACTGTAATCTCAGGGAGATAAGATCTGA-CA---CGA
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGATCT-ATTATTTCAA
* * ** * *
4867343 TCTACTCTACTGTAA-CTTCAGATAGCTAAGATCCT-TTATTTTAA
1 TCTGCTCCACTGTAATC-TCAGGGAGATAAGAT-CTATTATTTCAA
** * * *
4867387 TCCACTCCACTGTAATCTCAGGGAGATAGGAT-TACTAGCTTCAA
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGATCTATTA-TTTCAA
** * * **
4867431 TCTATTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATT-CTTCGG
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGATCT---ATTATTTCAA
*
4867477 TCTGTTCCACTGTAATCTCAGGGAGATAAGA
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGA
4867508 CCTGACGCGA
Statistics
Matches: 855, Mismatches: 236, Indels: 141
0.69 0.19 0.11
Matches are distributed among these distances:
40 9 0.01
41 167 0.20
42 5 0.01
43 13 0.02
44 572 0.67
45 23 0.03
46 64 0.07
48 2 0.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (44 bp):
TCTGCTCCACTGTAATCTCAGGGAGATAAGATCTATTATTTCAA
Found at i:4866680 original size:217 final size:217
Alignment explanation
Indices: 4866353--4867464 Score: 1211
Period size: 217 Copynumber: 5.1 Consensus size: 217
4866343 ATCTACTCTG
* *
4866353 CTGTAA-CTTCAGAGAGATAAGATCCTTTA-TTTTAATCCGCTCCACTGTAATCTCAGGGAGATA
1 CTGTAATC-TCAGGGAGATAAGAT-CTTTAGTTTTAATCCGCTCCACTGTAATATCAGGGAGATA
* *
4866416 GGATTACTAGCTTCGATCTGCTCCGCTATAATCTCAGGGAGATAAGACCTGGTACGATCTACTCT
64 GGATTACTAGCTTCGATCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGGTACGATCTACTCT
*
4866481 ACTGTAACTTCAGAGAGATAAGATCATTGGTTTTAATCTGCTCCACTGTAATATCAGGGAGATAG
129 ACTGTAACTTCAGAGAGATAAGATCATTGGTTTTAATCCGCTCCACTGTAATATCAGGGAGATAG
* *
4866546 GATTACTAGCTTCGATCTGTTCCA
194 GATTACTAGCTTCAATCTGCTCCA
* * * *
4866570 CTGTAATCTCAAGGAGATAAGATCTTTGGTTTTAATCCGCTCTACCGTAATATCAGGGAGATAGG
1 CTGTAATCTCAGGGAGATAAGATCTTTAGTTTTAATCCGCTCCACTGTAATATCAGGGAGATAGG
* * *
4866635 ATTACTAGCTTCGATTTGCTCCACTGTAATCTCAGGGAGATAAGACCTGTTACAATCTACTCTAC
66 ATTACTAGCTTCGATCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGGTACGATCTACTCTAC
* *
4866700 TGTAACTTCAGAGAGATAATATCATTGGTTTTAATCCACTCCACTGTAATATCAGGGAGATAGGA
131 TGTAACTTCAGAGAGATAAGATCATTGGTTTTAATCCGCTCCACTGTAATATCAGGGAGATAGGA
* *
4866765 TTACTAGCTTCGATTTGCTCCA
196 TTACTAGCTTCAATCTGCTCCA
* * ** * *
4866787 CTGTAATCTCAGGGAGAT-AGAAT-TACTAGCTTCGATCTGCTCCACTGTAATATAAGGGAGATA
1 CTGTAATCTCAGGGAGATAAG-ATCT-TTAGTTTTAATCCGCTCCACTGTAATATCAGGGAGATA
* * * * * * * * * *** **
4866850 AGA--CCT-GGTACGATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCATTGATTTTAATCCG
64 GGATTACTAGCTTCGATCTGCTCCACTGTAATC-TCAGGGAGATAAGA-C-CTG-GTACGATCTA
* * * * * * * * ** * *
4866911 CTCCACTATAA-TATCAGGGAGATAGGATTACTAGCTTCGATCTGCTCCACTGTAATCTCAGGGA
125 CTCTACTGTAACT-TCAGAGAGATAAGATCATTGGTTTTAATCCGCTCCACTGTAATATCAGGGA
* * * * *
4866975 GATAAGATCT-TTGGTTTTAATCTGCTCCA
189 GATAGGAT-TACTAGCTTCAATCTGCTCCA
* * * * * * * * * *
4867004 CTGTAATATCAGGGAGATAGGAT-TACTAGCTTCAATCTGCTCCGCTGTAATCTTAGGGAGATAA
1 CTGTAATCTCAGGGAGATAAGATCT-TTAGTTTTAATCCGCTCCACTGTAATATCAGGGAGATAG
** * * * * *
4867068 GATCTAAAATTCTTCGGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTACTC
65 GAT-TACTA-GCTTCGATCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGGTACGATCTACTC
* *
4867133 TACTGTAACTTCAGAGAGATAAGATCCTTGGTTTTAATCCGGTCCACTGTAATATCAGGGAGATA
128 TACTGTAACTTCAGAGAGATAAGATCATTGGTTTTAATCCGCTCCACTGTAATATCAGGGAGATA
*
4867198 GGATTACTAGCTTCAATCTGCTCCG
193 GGATTACTAGCTTCAATCTGCTCCA
*
4867223 CTGTAATCTCAGGGAGATAAGATCTTTGGTTTTAATCCGCTCCACTGTAATATCAGGGAGATAGG
1 CTGTAATCTCAGGGAGATAAGATCTTTAGTTTTAATCCGCTCCACTGTAATATCAGGGAGATAGG
* * * **
4867288 ATTACTAGCTTCGATCTACTCTACTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTAC
66 ATTACTAGCTTCGATCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGGTACGATCTACTCTAC
* * * ** * *
4867353 TGTAACTTCAGATAGCTAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGA
131 TGTAACTTCAGAGAGATAAGATCATTGGTTTTAATCCGCTCCACTGTAATATCAGGGAGATAGGA
** *
4867418 TTACTAGCTTCAATCTATTCCG
196 TTACTAGCTTCAATCTGCTCCA
4867440 CTGTAATCTCAGGGAGATAAGATCT
1 CTGTAATCTCAGGGAGATAAGATCT
4867465 GAAATTCTTC
Statistics
Matches: 738, Mismatches: 137, Indels: 40
0.81 0.15 0.04
Matches are distributed among these distances:
213 1 0.00
214 30 0.04
215 3 0.00
216 10 0.01
217 527 0.71
218 7 0.01
219 127 0.17
220 4 0.01
221 1 0.00
222 27 0.04
223 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (217 bp):
CTGTAATCTCAGGGAGATAAGATCTTTAGTTTTAATCCGCTCCACTGTAATATCAGGGAGATAGG
ATTACTAGCTTCGATCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGGTACGATCTACTCTAC
TGTAACTTCAGAGAGATAAGATCATTGGTTTTAATCCGCTCCACTGTAATATCAGGGAGATAGGA
TTACTAGCTTCAATCTGCTCCA
Found at i:4866704 original size:173 final size:173
Alignment explanation
Indices: 4866303--4867022 Score: 537
Period size: 173 Copynumber: 4.2 Consensus size: 173
4866293 AATCCCTCGG
* * * * * * *
4866303 TCTGTTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGA
1 TCTGCTCCACTGTAATATAAGGGAGATAAGACCTGGTACAATCTACTCTACTGTAACTTCAGAGA
* * * * * * *
4866368 GATAAGATC-CTTTA-TTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCG
66 GATAAGATCAC--TAGCTTCAATCCACTCCACTGTAATATCAAGGAGATAAGATTACTAGCTTCA
* * ** * * * *
4866431 ATCTGCTCCGCTATAATCTCAGGGAGATA-AGA--CCT-GGTACGA
129 ATCCGCTCCACCGTAATATCAGGGAGATAGA-ATTACTAGCTTCGA
* * * * * ** * *
4866473 TCTACTCTACTGTAACT-TCAGAGAGATAAGATCATTGGTTTTAATCTGCTCCACTGTAA-TATC
1 TCTGCTCCACTGTAA-TATAAGGGAGATAAGA-C-CTGG-TACAATCTACTCTACTGTAACT-TC
* * * * *** * * * *
4866536 AGGGAGATAGGATTACTAGCTTCGATCTGTTCCACTGTAATCTCAAGGAGATAAGATCT-TTGGT
61 AGAGAGATAAGATCACTAGCTTCAATCCACTCCACTGTAATATCAAGGAGATAAGAT-TACTAGC
* * *
4866600 TTTAATCCGCTCTACCGTAATATCAGGGAGATAGGATTACTAGCTTCGA
125 TTCAATCCGCTCCACCGTAATATCAGGGAGATAGAATTACTAGCTTCGA
* * * *
4866649 TTTGCTCCACTGTAATCTCAGGGAGATAAGACCTGTTACAATCTACTCTACTGTAACTTCAGAGA
1 TCTGCTCCACTGTAATATAAGGGAGATAAGACCTGGTACAATCTACTCTACTGTAACTTCAGAGA
* * * * * * * *
4866714 GATAATATCATTGGTTTTAATCCACTCCACTGTAATATCAGGGAGATAGGATTACTAGCTTCGAT
66 GATAAGATCACTAGCTTCAATCCACTCCACTGTAATATCAAGGAGATAAGATTACTAGCTTCAAT
** * *
4866779 TTGCTCCACTGTAATCTCAGGGAGATAGAATTACTAGCTTCGA
131 CCGCTCCACCGTAATATCAGGGAGATAGAATTACTAGCTTCGA
*
4866822 TCTGCTCCACTGTAATATAAGGGAGATAAGACCTGGTACGATCTACTCTACTGTAACTTCAGAGA
1 TCTGCTCCACTGTAATATAAGGGAGATAAGACCTGGTACAATCTACTCTACTGTAACTTCAGAGA
* * * * * * * *
4866887 GATAAGATCA-TTGATTTTAATCCGCTCCACTATAATATCAGGGAGATAGGATTACTAGCTTCGA
66 GATAAGATCACTAG-CTTCAATCCACTCCACTGTAATATCAAGGAGATAAGATTACTAGCTTCAA
* * * * * * **
4866951 TCTGCTCCACTGTAATCTCAGGGAGATA-AGATCT-TTGGTTTTAA
130 TCCGCTCCACCGTAATATCAGGGAGATAGA-AT-TACTAGCTTCGA
*
4866995 TCTGCTCCACTGTAATATCAGGGAGATA
1 TCTGCTCCACTGTAATATAAGGGAGATA
4867023 GGATTACTAG
Statistics
Matches: 443, Mismatches: 89, Indels: 33
0.78 0.16 0.06
Matches are distributed among these distances:
170 25 0.06
171 2 0.00
172 9 0.02
173 367 0.83
174 6 0.01
175 4 0.01
176 30 0.07
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (173 bp):
TCTGCTCCACTGTAATATAAGGGAGATAAGACCTGGTACAATCTACTCTACTGTAACTTCAGAGA
GATAAGATCACTAGCTTCAATCCACTCCACTGTAATATCAAGGAGATAAGATTACTAGCTTCAAT
CCGCTCCACCGTAATATCAGGGAGATAGAATTACTAGCTTCGA
Found at i:4867400 original size:129 final size:130
Alignment explanation
Indices: 4866386--4867507 Score: 915
Period size: 129 Copynumber: 8.6 Consensus size: 130
4866376 CCTTTATTTT
* * * *
4866386 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCGATCTGCTCCGCTATAATCTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGA-T-CTAGCTTCGATCTGCTCCACTGTAATCTC
* *** * * * * * * * *
4866451 AGGGAGATAAGA-CC--TGGTACGATCTACTCTACTGTAACT-TCAGAGAGATAAGATCATTGGT
64 AGGGAGATAAGATCCTTTGTTTTAATCCACTCCACTGTAA-TATCAGGGAGATAGGATTACTAGC
*
4866512 TTT
128 TTC
* * *
4866515 AATCTGCTCCACTGTAATATCAGGGAGATAGGATTACTAGCTTCGATCTGTTCCACTGTAATCTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGA-T-CTAGCTTCGATCTGCTCCACTGTAATCTC
* * * *
4866580 AAGGAGATAAGAT-CTTTGGTTTTAATCCGCTCTACCGTAATATCAGGGAGATAGGATTACTAGC
64 AGGGAGATAAGATCCTTT-GTTTTAATCCACTCCACTGTAATATCAGGGAGATAGGATTACTAGC
4866644 TTC
128 TTC
* * * * * *
4866647 GATTTGCTCCACTGTAATCTCAGGGAGATAAGACCT-G-TTACAATCTACTCTACTGTAA-CTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTAGCTT-CGATCTGCTCCACTGTAATC-TC
* * * *
4866709 AGAGAGATAATATCATTGGTTTTAATCCACTCCACTGTAATATCAGGGAGATAGGATTACTAGCT
64 AGGGAGATAAGATCCTTTGTTTTAATCCACTCCACTGTAATATCAGGGAGATAGGATTACTAGCT
4866774 TC
129 TC
* * *
4866776 GATTTGCTCCACTGTAATCTCAGGGAGAT-AGAATTACTAGCTTCGATCTGCTCCACTGTAATAT
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAG-A-T-CTAGCTTCGATCTGCTCCACTGTAATCT
* * *** * * * * * *
4866840 AAGGGAGATAAGA-CC--TGGTACGATCTACTCTACTGTAACT-TCAGAGAGATAAGATCA-TTG
63 CAGGGAGATAAGATCCTTTGTTTTAATCCACTCCACTGTAA-TATCAGGGAGATAGGATTACTAG
* *
4866900 ATTTT
127 -CTTC
* * * *
4866905 AATCCGCTCCACTATAATATCAGGGAGATAGGATTACTAGCTTCGATCTGCTCCACTGTAATCTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGA-T-CTAGCTTCGATCTGCTCCACTGTAATCTC
**
4866970 AGGGAGATAAGAT-CTTTGGTTTTAATCTGCTCCACTGTAATATCAGGGAGATAGGATTACTAGC
64 AGGGAGATAAGATCCTTT-GTTTTAATCCACTCCACTGTAATATCAGGGAGATAGGATTACTAGC
4867034 TTC
128 TTC
* * * * *
4867037 AATCTGCTCCGCTGTAATCTTAGGGAGATAAGATCTAAAATTCTTCGGTCTGTTCCACTGTAATC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATCT---A-GCTTCGATCTGCTCCACTGTAATC
* * *** * * * * *
4867102 TCAGGGAAATAAGA-CC--TGGTGCGATCTACTCTACTGTAACT-TCAGAGAGATAAGA-TCCTT
62 TCAGGGAGATAAGATCCTTTGTTTTAATCCACTCCACTGTAA-TATCAGGGAGATAGGATTAC-T
* * *
4867162 GGTTTT
125 AGCTTC
* * * * * *
4867168 AATCCGGTCCACTGTAATATCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGA-T-CTAGCTTCGATCTGCTCCACTGTAATCTC
*
4867233 AGGGAGATAAGAT-CTTTGGTTTTAATCCGCTCCACTGTAATATCAGGGAGATAGGATTACTAGC
64 AGGGAGATAAGATCCTTT-GTTTTAATCCACTCCACTGTAATATCAGGGAGATAGGATTACTAGC
4867297 TTC
128 TTC
* * * * * *
4867300 GATCTACTCTACTGTAATCTCAGGGAGATAAGATCT-GAC-ACGATCTACTCTACTGTAA-CTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTAG-CTTCGATCTGCTCCACTGTAATC-TC
** * * *
4867362 AGATAGCTAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAGCT
64 AGGGAGATAAGATCCTTTGTTTTAATCCACTCCACTGTAATATCAGGGAGATAGGATTACTAGCT
4867427 TC
129 TC
** * * * *
4867429 AATCTATTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTGTTCCACTGTAATC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATCT---A-GCTTCGATCTGCTCCACTGTAATC
4867494 TCAGGGAGATAAGA
62 TCAGGGAGATAAGA
4867508 CCTGACGCGA
Statistics
Matches: 788, Mismatches: 157, Indels: 91
0.76 0.15 0.09
Matches are distributed among these distances:
128 8 0.01
129 413 0.52
130 18 0.02
131 70 0.09
132 208 0.26
133 10 0.01
134 60 0.08
135 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (130 bp):
AATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTAGCTTCGATCTGCTCCACTGTAATCTCAG
GGAGATAAGATCCTTTGTTTTAATCCACTCCACTGTAATATCAGGGAGATAGGATTACTAGCTTC
Found at i:4867507 original size:46 final size:47
Alignment explanation
Indices: 4867392--4867512 Score: 142
Period size: 46 Copynumber: 2.7 Consensus size: 47
4867382 TTTAATCCAC
* *
4867392 TCCACTGTAATCTCAGGGAGATAGGAT-T--ACTAGCTTCAATCTAT
1 TCCACTGTAATCTCAGGGAGATAAGATCTGAAATAGCTTCAATCTAT
* * ** *
4867436 TCCGCTGTAATCTCAGGGAGATAAGATCTGAAAT-TCTTCGGTCTGT
1 TCCACTGTAATCTCAGGGAGATAAGATCTGAAATAGCTTCAATCTAT
*
4867482 TCCACTGTAATCTCAGGGAGATAAGACCTGA
1 TCCACTGTAATCTCAGGGAGATAAGATCTGA
4867513 CGCGATCTAC
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
44 25 0.38
45 1 0.02
46 37 0.57
47 2 0.03
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (47 bp):
TCCACTGTAATCTCAGGGAGATAAGATCTGAAATAGCTTCAATCTAT
Found at i:4869871 original size:6 final size:6
Alignment explanation
Indices: 4869860--4869895 Score: 56
Period size: 6 Copynumber: 6.0 Consensus size: 6
4869850 TTGACCTCTC
4869860 CTTTTT CTTTTT CTTTTT CTTTTT -TTTTT CTATTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CT-TTTT
4869896 GACTTTGATT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.18
6 19 0.68
7 4 0.14
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (6 bp):
CTTTTT
Found at i:4875565 original size:261 final size:261
Alignment explanation
Indices: 4875101--4875575 Score: 743
Period size: 261 Copynumber: 1.8 Consensus size: 261
4875091 TACCACCGAA
*
4875101 GTTGCAGCGAAACAGATTAAAGCTAAAAATAGCGAATCTTGTTTCCCTGGCGTTGCAGTGGAATA
1 GTTGCAGCGAAACAGATTAAAGCTAAAAATAGCAAATCTTGTTTCCCTGGCGTTGCAGTGGAATA
* * * *
4875166 GATTAAAGCTGAAGTAGAGCGGATTAAAGTTGAAGGCAGCGAATCCTATCTCTTTGGTGTCATAG
66 GATTAAAGCTGAAGTAGAGCGGATTAAAGTTGAAGGCAACAAATCCTATCTCATTGGTGTCACAG
* * *
4875231 TGGAACAGATTAAAACTAAAGGTAGCGAATCTTGTTTCCCTGGTATTACAACGGAGCAGATCAAA
131 TGGAACAGATTAAAACTAAAAGTAGCGAATCTTCTTTCCCTGGCATTACAACGGAGCAGATCAAA
4875296 GCTGAAGGCAGCGAATCTTATCTCTCTAGCGTTAAGACTGAGAGCAGCAAATCTTATTTCCCTTA
196 GCTGAAGGCAGCGAATCTTATCTCTCTAGCGTTAAGACTGAGAGCAGCAAATCTTATTTCCCTTA
4875361 C
261 C
* ** * *
4875362 GTTGCAGCGGAACAGATTAAAGCTAAAGGTAGCAAATCTTGTTTTCCTGGTGTTGCAGTGGAATA
1 GTTGCAGCGAAACAGATTAAAGCTAAAAATAGCAAATCTTGTTTCCCTGGCGTTGCAGTGGAATA
* * **
4875427 GATTAAAGCTGAAGTGGAGCGGATTAAAGTTGAAGGTAACAAATCCTATCTCATTGGTGTTGCAG
66 GATTAAAGCTGAAGTAGAGCGGATTAAAGTTGAAGGCAACAAATCCTATCTCATTGGTGTCACAG
* * * * *
4875492 TGGAACAGATTAAAGCTAAAAGTAGCGAATCTTCTTTCTCTGGCGTTGCAACGGAGCAGATTAAA
131 TGGAACAGATTAAAACTAAAAGTAGCGAATCTTCTTTCCCTGGCATTACAACGGAGCAGATCAAA
*
4875557 GTTGAAGGCAGCGAATCTT
196 GCTGAAGGCAGCGAATCTT
4875576 GTTTCCTTAG
Statistics
Matches: 191, Mismatches: 23, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
261 191 1.00
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (261 bp):
GTTGCAGCGAAACAGATTAAAGCTAAAAATAGCAAATCTTGTTTCCCTGGCGTTGCAGTGGAATA
GATTAAAGCTGAAGTAGAGCGGATTAAAGTTGAAGGCAACAAATCCTATCTCATTGGTGTCACAG
TGGAACAGATTAAAACTAAAAGTAGCGAATCTTCTTTCCCTGGCATTACAACGGAGCAGATCAAA
GCTGAAGGCAGCGAATCTTATCTCTCTAGCGTTAAGACTGAGAGCAGCAAATCTTATTTCCCTTA
C
Found at i:4875614 original size:51 final size:51
Alignment explanation
Indices: 4875486--4875624 Score: 145
Period size: 51 Copynumber: 2.7 Consensus size: 51
4875476 CTCATTGGTG
* * * * *
4875486 TTGCAGTGGAACAGATTAAAGCTAAAAGTAGCGAATCTTCTTTCTCTGGCG
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTCTTTCTCTAGCA
** * * *
4875537 TTGCAACGGAGCAGATTAAAGTTGAAGGCAGCGAATCTTGTTTC-CTTAGCA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTCTTTCTC-TAGCA
* *
4875588 TTGCAGTGGAATAGATTAAAGCTGAAGTGGAGCGAAT
1 TTGCAGTGGAACAGATTAAAGCTGAAG-GCAGCGAAT
4875625 TAAAGTTGAA
Statistics
Matches: 70, Mismatches: 16, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
50 1 0.01
51 61 0.87
52 8 0.11
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (51 bp):
TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTCTTTCTCTAGCA
Found at i:4875643 original size:20 final size:21
Alignment explanation
Indices: 4875602--4875644 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
4875592 AGTGGAATAG
4875602 ATTAAAGCTGAAGTGGAGCGA
1 ATTAAAGCTGAAGTGGAGCGA
* *
4875623 ATTAAAGTTGAAG-GTAGCGA
1 ATTAAAGCTGAAGTGGAGCGA
4875643 AT
1 AT
4875645 CTTGTTTCTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.40, C:0.07, G:0.30, T:0.23
Consensus pattern (21 bp):
ATTAAAGCTGAAGTGGAGCGA
Found at i:4875665 original size:174 final size:174
Alignment explanation
Indices: 4875361--4875679 Score: 435
Period size: 174 Copynumber: 1.8 Consensus size: 174
4875351 ATTTCCCTTA
* * * **
4875361 CGTTGCAGCGGAACAGATTAAAGCTAAAGGTAGCAAATCTTGTTTTCCTGGTGTTGCAGTGGAAT
1 CGTTGCAACGGAACAGATTAAAGCTAAAGGCAGCAAATCTTGTTTTCCTAGCATTGCAGTGGAAT
* *
4875426 AGATTAAAGCTGAAGTGGAGCGGATTAAAGTTGAAGGTAACAAATCCTATCTCATTGGTGTTGCA
66 AGATTAAAGCTGAAGTGGAGCGAATTAAAGTTGAAGGTAACAAATCCTATCTCATTGGCGTTGCA
**
4875491 GTGGAACAGATTAAAGCTAAAAGTAGCGAATCTTCTTTCTCTGG
131 GCAGAACAGATTAAAGCTAAAAGTAGCGAATCTTCTTTCTCTGG
* * * *
4875535 CGTTGCAACGGAGCAGATTAAAGTTGAAGGCAGCGAATCTTG-TTTCCTTAGCATTGCAGTGGAA
1 CGTTGCAACGGAACAGATTAAAGCTAAAGGCAGCAAATCTTGTTTTCC-TAGCATTGCAGTGGAA
* * * * *
4875599 TAGATTAAAGCTGAAGTGGAGCGAATTAAAGTTGAAGGTAGCGAATCTTGTTTC-TCTGGCGTTG
65 TAGATTAAAGCTGAAGTGGAGCGAATTAAAGTTGAAGGTAACAAATCCTATCTCAT-TGGCGTTG
*
4875663 CAGCAGAGCAGATTAAA
129 CAGCAGAACAGATTAAA
4875680 ACTGAAGGCT
Statistics
Matches: 124, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
173 6 0.05
174 118 0.95
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (174 bp):
CGTTGCAACGGAACAGATTAAAGCTAAAGGCAGCAAATCTTGTTTTCCTAGCATTGCAGTGGAAT
AGATTAAAGCTGAAGTGGAGCGAATTAAAGTTGAAGGTAACAAATCCTATCTCATTGGCGTTGCA
GCAGAACAGATTAAAGCTAAAAGTAGCGAATCTTCTTTCTCTGG
Found at i:4875676 original size:72 final size:72
Alignment explanation
Indices: 4875551--4875686 Score: 184
Period size: 72 Copynumber: 1.9 Consensus size: 72
4875541 AACGGAGCAG
** * *
4875551 ATTAAAGTTGAAGGCAGCGAATCTTGTTTCCTTAGCATTGCAGTGGAATAGATTAAAGCTGAAGT
1 ATTAAAGTTGAAGGCAGCGAATCTTGTTTCCTTAGCATTGCAGCAGAACAGATTAAAACTGAAGT
4875616 GGAGCGA
66 GGAGCGA
* * * *
4875623 ATTAAAGTTGAAGGTAGCGAATCTTGTTT-CTCTGGCGTTGCAGCAGAGCAGATTAAAACTGAAG
1 ATTAAAGTTGAAGGCAGCGAATCTTGTTTCCT-TAGCATTGCAGCAGAACAGATTAAAACTGAAG
4875687 GCTGCGAATC
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
71 2 0.04
72 53 0.96
ACGTcount: A:0.32, C:0.13, G:0.27, T:0.28
Consensus pattern (72 bp):
ATTAAAGTTGAAGGCAGCGAATCTTGTTTCCTTAGCATTGCAGCAGAACAGATTAAAACTGAAGT
GGAGCGA
Found at i:4875802 original size:51 final size:51
Alignment explanation
Indices: 4875725--4875838 Score: 140
Period size: 51 Copynumber: 2.2 Consensus size: 51
4875715 GACTGAGAGC
* *
4875725 AGCGAATCTTATTTCCCTGACGTTGCAGCGGAGCAGATTAAAGCT-AAAGGT
1 AGCGAATCTTATTTCCCTGACATTGCAACGGAGCAGATTAAAGCTGAAA-GT
* * * **
4875776 AGCGAATCTTGTTTCTCTGGCATTGCAACGGATTAGATTAAAGCTGAAAGT
1 AGCGAATCTTATTTCCCTGACATTGCAACGGAGCAGATTAAAGCTGAAAGT
*
4875827 AGCAAATCTTAT
1 AGCGAATCTTAT
4875839 CTCCTTGGCG
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
51 50 0.94
52 3 0.06
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (51 bp):
AGCGAATCTTATTTCCCTGACATTGCAACGGAGCAGATTAAAGCTGAAAGT
Found at i:4876158 original size:44 final size:44
Alignment explanation
Indices: 4875958--4876428 Score: 199
Period size: 44 Copynumber: 10.7 Consensus size: 44
4875948 AAGCCACCAG
** * * * ** *
4875958 TCCTATCTCCCGGAGCAGTAGTGGAGTAGGTTAAAGGTTACAGA
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACTGCAGA
* * * *
4876002 TTCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTG-TGAA
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACTGCAG-A
* * * *** * **
4876046 TCTTATCTTCCTAAGGTAGTAGAAAAGCAGATAT-AAGCCACCAG-
1 TCCTATCTCCCTAA-GCAGTAGTGGAGCAGAT-TGAAGACTGCAGA
* * * * * *
4876090 TCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGCAGC
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACTGCAGA
* * *
4876134 TCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGC-GAA
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACTGCAG-A
* * * * * *
4876178 TCTTATCTTCCC-AAGGTAGTAGGGGAGCATATTTAA-ACCGCCAG-
1 TCCTATC-TCCCTAA-GCAGTAGTGGAGCAGATTGAAGACTG-CAGA
* * *
4876222 TCCTATCTCCCTAAGCAGCAGTGGAGTA-AGTTGAAGATTGCAGA
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGA-TTGAAGACTGCAGA
* * * * * *
4876266 TCCTGTCTCCCTAAGTAGTAGTAGAGCAGATCGTAGACAGC-GAA
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACTGCAG-A
** * * * * * * **
4876310 TATTATCCTTCC-AAGGTAGTAGAGAAGCAGATTTAAGCCACCAG-
1 TCCTAT-CTCCCTAA-GCAGTAGTGGAGCAGATTGAAGACTGCAGA
* * * * *
4876354 TCCTATCTCCCTGAGCAGAAGTGGAGTAGGTTGAAGATTGCAGA
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACTGCAGA
* * *
4876398 TCCTGTCTCCCTAAGTAGTAGTGTAGCAGAT
1 TCCTATCTCCCTAAGCAGTAGTGGAGCAGAT
4876429 CAAGGACAGT
Statistics
Matches: 298, Mismatches: 107, Indels: 44
0.66 0.24 0.10
Matches are distributed among these distances:
42 2 0.01
43 62 0.21
44 169 0.57
45 62 0.21
46 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (44 bp):
TCCTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACTGCAGA
Found at i:4876500 original size:132 final size:132
Alignment explanation
Indices: 4875902--4876493 Score: 821
Period size: 132 Copynumber: 4.5 Consensus size: 132
4875892 GGGGCAAACT
* * *
4875902 GAAGACGGTGAATCTTATCTTCCCAAGGTAGTAGAGAAGTAGATTAAAGCCACCAGTCCTATCTC
1 GAAGACAGTGAATCTTATCTTCCCAAGGTAGTAGAGAAGCAGATTTAAGCCACCAGTCCTATCTC
* * * * * *
4875967 CCGGAGCAGTAGTGGAGTAGGTTAAAGGTTACAGATTCTGTCTCCCTAAGCAGTAGTGGAGCAGA
66 CCTGAGCAGCAGTGGAGTAGGTTGAAGATTGCAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGA
4876032 TC
131 TC
* * * *
4876034 GAAGACTGTGAATCTTATCTTCCTAAGGTAGTAGAAAAGCAGATATAAGCCACCAGTCCTATCTC
1 GAAGACAGTGAATCTTATCTTCCCAAGGTAGTAGAGAAGCAGATTTAAGCCACCAGTCCTATCTC
*
4876099 CCTGAGCAGCAGTGGAGTAGGTTGAAGATTGCAGCTCCTGTCTCCCTAAGCAGTAGTGGAGCAGA
66 CCTGAGCAGCAGTGGAGTAGGTTGAAGATTGCAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGA
4876164 TC
131 TC
* * * * * *
4876166 GAAGACAGCGAATCTTATCTTCCCAAGGTAGTAGGGGAGCATATTTAAACCGCCAGTCCTATCTC
1 GAAGACAGTGAATCTTATCTTCCCAAGGTAGTAGAGAAGCAGATTTAAGCCACCAGTCCTATCTC
* * * *
4876231 CCTAAGCAGCAGTGGAGTAAGTTGAAGATTGCAGATCCTGTCTCCCTAAGTAGTAGTAGAGCAGA
66 CCTGAGCAGCAGTGGAGTAGGTTGAAGATTGCAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGA
4876296 TC
131 TC
* * *
4876298 GTAGACAGCGAATATTATCCTT-CCAAGGTAGTAGAGAAGCAGATTTAAGCCACCAGTCCTATCT
1 GAAGACAGTGAATCTTAT-CTTCCCAAGGTAGTAGAGAAGCAGATTTAAGCCACCAGTCCTATCT
* * *
4876362 CCCTGAGCAGAAGTGGAGTAGGTTGAAGATTGCAGATCCTGTCTCCCTAAGTAGTAGTGTAGCAG
65 CCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGCAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAG
4876427 ATC
130 ATC
* * * * *
4876430 -AAGGACAGTGAATCTTATCTTTCTAAGGTAGTA-AGGAAGCAGATTGAAGCCACTAGTCTTATC
1 GAA-GACAGTGAATCTTATCTTCCCAAGGTAGTAGA-GAAGCAGATTTAAGCCACCAGTCCTATC
4876493 T
64 T
4876494 TACTGAGGTT
Statistics
Matches: 409, Mismatches: 47, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
131 5 0.01
132 401 0.98
133 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (132 bp):
GAAGACAGTGAATCTTATCTTCCCAAGGTAGTAGAGAAGCAGATTTAAGCCACCAGTCCTATCTC
CCTGAGCAGCAGTGGAGTAGGTTGAAGATTGCAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGA
TC
Found at i:4876538 original size:45 final size:45
Alignment explanation
Indices: 4876488--4876573 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 45
4876478 GCCACTAGTC
* * *
4876488 TTATCTTACTGAGGTTGCAGT-GTAGAAGACTGAAGATAGCAACTT
1 TTATCTCACTCAGGTTGCAGTAG-AGAAGACTGAAGAAAGCAACTT
*
4876533 TTATCTCACTCAGGTTGCAGTAGAGTAGACTGAAGAAAGCA
1 TTATCTCACTCAGGTTGCAGTAGAGAAGACTGAAGAAAGCA
4876574 GATCTTATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
45 35 0.97
46 1 0.03
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (45 bp):
TTATCTCACTCAGGTTGCAGTAGAGAAGACTGAAGAAAGCAACTT
Found at i:4878424 original size:16 final size:16
Alignment explanation
Indices: 4878403--4878435 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
4878393 AATACTTTGA
4878403 TATTATTA-TTATTATT
1 TATTATTAGTT-TTATT
4878419 TATTATTAGTTTTATT
1 TATTATTAGTTTTATT
4878435 T
1 T
4878436 TCCTTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.88
17 2 0.12
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (16 bp):
TATTATTAGTTTTATT
Found at i:4878678 original size:13 final size:14
Alignment explanation
Indices: 4878660--4878688 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
4878650 TATATTTGTC
4878660 TTATTATAT-ATTA
1 TTATTATATAATTA
4878673 TTATTATATAATTA
1 TTATTATATAATTA
4878687 TT
1 TT
4878689 TATATGTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
TTATTATATAATTA
Found at i:4878857 original size:18 final size:17
Alignment explanation
Indices: 4878826--4878886 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 17
4878816 TAAATAGATT
*
4878826 TTTACTTTTATATTTTTA
1 TTTA-TTTTGTATTTTTA
*
4878844 TTTATTTTCGTATTGTTA
1 TTTATTTT-GTATTTTTA
*
4878862 -TTATTGTTTTATCTTTTA
1 TTTATT-TTGTAT-TTTTA
4878880 TTTATTT
1 TTTATTT
4878887 ATTTATGTGT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
17 12 0.34
18 18 0.51
19 5 0.14
ACGTcount: A:0.18, C:0.05, G:0.05, T:0.72
Consensus pattern (17 bp):
TTTATTTTGTATTTTTA
Found at i:4878907 original size:44 final size:42
Alignment explanation
Indices: 4878825--4878907 Score: 98
Period size: 44 Copynumber: 1.9 Consensus size: 42
4878815 ATAAATAGAT
*
4878825 TTTTACTTTTATATTTTTATTTATTTTCGTATTGTTATTATTG
1 TTTTACTTTTATATTTTTATTTATTTTCG-ATTATTATTATTG
4878868 TTTTATCTTTTAT-TTATTTATTTATGTGTTC-ATTATTATT
1 TTTTA-CTTTTATATT-TTTATTTAT-T-TTCGATTATTATT
4878908 TTTATGAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
43 7 0.20
44 24 0.69
45 1 0.03
46 3 0.09
ACGTcount: A:0.19, C:0.05, G:0.06, T:0.70
Consensus pattern (42 bp):
TTTTACTTTTATATTTTTATTTATTTTCGATTATTATTATTG
Found at i:4879309 original size:73 final size:73
Alignment explanation
Indices: 4879190--4879331 Score: 250
Period size: 73 Copynumber: 1.9 Consensus size: 73
4879180 TATTTTCAAA
* *
4879190 CAAGTTTTAAACGATCTCGAGAATTAAGAAGAGATCGTGTCCTAACTTACTGGGCATGATTCCTT
1 CAAGTTTTAAACGATCTCGAGAATTAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATCCCTT
4879255 TTTTTTCT
66 TTTTTTCT
4879263 CAAGTTTTAAACGATCTC-AGGAATTAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATCCCT
1 CAAGTTTTAAACGATCTCGA-GAATTAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATCCCT
4879327 TTTTT
65 TTTTT
4879332 AAAATCTGAG
Statistics
Matches: 66, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
72 1 0.02
73 65 0.98
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (73 bp):
CAAGTTTTAAACGATCTCGAGAATTAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATCCCTT
TTTTTTCT
Found at i:4884223 original size:83 final size:83
Alignment explanation
Indices: 4884094--4884247 Score: 256
Period size: 83 Copynumber: 1.9 Consensus size: 83
4884084 TTTTGTGATT
4884094 TTTTGATCTGCCAAATTATCACATAAATATTTTAGAAAAGGTAAATCTCTC-TTTTCTGAGGATG
1 TTTTGATCTGCCAAATTATCACATAAATATTTTAGAAAAGGTAAATCTCTCTTTTTCTGAGGAT-
4884158 GGATGTACGAGTTTTATAA
65 GGATGTACGAGTTTTATAA
** * *
4884177 TTTTGATCTTTCAAATTATCACATAAGTATTTTAGAGAAGGTAAATCTCTCTTTTTCTGAGGATG
1 TTTTGATCTGCCAAATTATCACATAAATATTTTAGAAAAGGTAAATCTCTCTTTTTCTGAGGATG
4884242 GATGTA
66 GATGTA
4884248 AGAAAAATTA
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
83 54 0.82
84 12 0.18
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.40
Consensus pattern (83 bp):
TTTTGATCTGCCAAATTATCACATAAATATTTTAGAAAAGGTAAATCTCTCTTTTTCTGAGGATG
GATGTACGAGTTTTATAA
Found at i:4885682 original size:19 final size:19
Alignment explanation
Indices: 4885660--4885696 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
4885650 AATGTGTTCT
* *
4885660 AAATTACATAATATATAAA
1 AAATAACATAACATATAAA
4885679 AAATAACATAACATATAA
1 AAATAACATAACATATAA
4885697 GTATTATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.65, C:0.08, G:0.00, T:0.27
Consensus pattern (19 bp):
AAATAACATAACATATAAA
Found at i:4892509 original size:24 final size:24
Alignment explanation
Indices: 4892494--4892545 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
4892484 AATCAAAGTC
4892494 AAATATATTATGCTAATAAATGCT
1 AAATATATTATGCTAATAAATGCT
* * *
4892518 AAATATATTATACTCATAAATACT
1 AAATATATTATGCTAATAAATGCT
4892542 AAAT
1 AAAT
4892546 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATGCTAATAAATGCT
Found at i:4899122 original size:28 final size:28
Alignment explanation
Indices: 4899082--4899141 Score: 120
Period size: 28 Copynumber: 2.1 Consensus size: 28
4899072 AATCCTCTTT
4899082 ACTTTGAGGATGTTATATATATAAATAA
1 ACTTTGAGGATGTTATATATATAAATAA
4899110 ACTTTGAGGATGTTATATATATAAATAA
1 ACTTTGAGGATGTTATATATATAAATAA
4899138 ACTT
1 ACTT
4899142 GGTGAAGAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.42, C:0.05, G:0.13, T:0.40
Consensus pattern (28 bp):
ACTTTGAGGATGTTATATATATAAATAA
Found at i:4899155 original size:30 final size:28
Alignment explanation
Indices: 4899082--4899155 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 28
4899072 AATCCTCTTT
* *
4899082 ACTTTGAGGATGTTATATATATAAATAA
1 ACTTTGAAGAAGTTATATATATAAATAA
* *
4899110 ACTTTGAGGATGTTATATATATAAATAA
1 ACTTTGAAGAAGTTATATATATAAATAA
4899138 ACTTGGTGAAGAAGTTAT
1 ACTT--TGAAGAAGTTAT
4899156 TAGAGTTCTT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
28 32 0.76
30 10 0.24
ACGTcount: A:0.41, C:0.04, G:0.18, T:0.38
Consensus pattern (28 bp):
ACTTTGAAGAAGTTATATATATAAATAA
Found at i:4901622 original size:15 final size:16
Alignment explanation
Indices: 4901587--4901623 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
4901577 AATAAAAATG
4901587 TAATTTATTATTTTAA
1 TAATTTATTATTTTAA
4901603 TAATTTA-TATCTTT-A
1 TAATTTATTAT-TTTAA
4901618 TAATTT
1 TAATTT
4901624 TTAAAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (16 bp):
TAATTTATTATTTTAA
Found at i:4905550 original size:24 final size:24
Alignment explanation
Indices: 4905514--4905563 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
4905504 CTCCTATTGG
4905514 CCTTAACCCCTTTCAATAGTCATT
1 CCTTAACCCCTTTCAATAGTCATT
*
4905538 CCTTAACCTCTTTCAATAGTCATT
1 CCTTAACCCCTTTCAATAGTCATT
4905562 CC
1 CC
4905564 CTCATTGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.24, C:0.34, G:0.04, T:0.38
Consensus pattern (24 bp):
CCTTAACCCCTTTCAATAGTCATT
Found at i:4909135 original size:109 final size:109
Alignment explanation
Indices: 4908883--4909221 Score: 515
Period size: 109 Copynumber: 3.1 Consensus size: 109
4908873 TGGATTGAGA
* * **
4908883 TTTAAAAGGATATTTGGCTATTTGGTCAAACAAG--AAATCGAAACCCAGCACATTAGGGCATAT
1 TTTAAAAGGATATTTGGCTATTTGGTCGAACAAGAAAAATAGAAACCCAGCACATTAGGGCACGT
4908946 TTT-T-GAATTTCCAAACGCAAAACATTGCCTTACTTTGAAATT
66 TTTCTCGAATTTCCAAACGCAAAACATTGCCTTACTTTGAAATT
* *
4908988 TTCTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAAAATTGAAACCCAGCACATTAGGGCACG
1 TT-TAAAAGGATATTTGGCTATTTGGTCGAACAAGAAAAATAGAAACCCAGCACATTAGGGCACG
* * *
4909053 TTTTCTCGAATTTCCAAACGCAAAATATTCCCTTATTTTGAAATT
65 TTTTCTCGAATTTCCAAACGCAAAACATTGCCTTACTTTGAAATT
* * *
4909098 TTTAAAAGAATATTTGGCTATTTGGTCGAACAAGAAAAATAAAAACCTAGCACATTAGGGCACGT
1 TTTAAAAGGATATTTGGCTATTTGGTCGAACAAGAAAAATAGAAACCCAGCACATTAGGGCACGT
*
4909163 TTTCTCGAATTTCCAAACGCAAAACATTGCCTTACTTTAAAATTT
66 TTTCTCGAATTTCCAAACGCAAAACATTGCCTTACTTTGAAA-TT
4909208 TTTAAAAGGATATT
1 TTTAAAAGGATATT
4909222 AATATGCGTA
Statistics
Matches: 210, Mismatches: 18, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
105 2 0.01
106 30 0.14
108 29 0.14
109 97 0.46
110 52 0.25
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (109 bp):
TTTAAAAGGATATTTGGCTATTTGGTCGAACAAGAAAAATAGAAACCCAGCACATTAGGGCACGT
TTTCTCGAATTTCCAAACGCAAAACATTGCCTTACTTTGAAATT
Found at i:4911246 original size:27 final size:26
Alignment explanation
Indices: 4911216--4911266 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
4911206 ACTAAAGCAT
* *
4911216 ATTGACGATAAAGTTAAAAATAAATAA
1 ATTGA-GAGAAAGTTAAAAAAAAATAA
*
4911243 ATTGAGAGAAATTTAAAAAAAAAT
1 ATTGAGAGAAAGTTAAAAAAAAAT
4911267 TAGAGTCAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 16 0.76
27 5 0.24
ACGTcount: A:0.61, C:0.02, G:0.12, T:0.25
Consensus pattern (26 bp):
ATTGAGAGAAAGTTAAAAAAAAATAA
Found at i:4911473 original size:7 final size:7
Alignment explanation
Indices: 4911461--4911490 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
4911451 CTTTTTAAGG
4911461 AAAAGAA
1 AAAAGAA
4911468 AAAAGAA
1 AAAAGAA
4911475 AAAAGAA
1 AAAAGAA
4911482 AAAAGAA
1 AAAAGAA
4911489 AA
1 AA
4911491 GCATTCAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (7 bp):
AAAAGAA
Found at i:4911816 original size:24 final size:23
Alignment explanation
Indices: 4911778--4911823 Score: 74
Period size: 24 Copynumber: 2.0 Consensus size: 23
4911768 TTTGGTGCTC
*
4911778 TTATTTTTCTGTTGTTTTTGTTG
1 TTATTTTTCTATTGTTTTTGTTG
4911801 TTATTTTTGCTATTGTTTTTGTT
1 TTATTTTT-CTATTGTTTTTGTT
4911824 ATTTATACTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 8 0.38
24 13 0.62
ACGTcount: A:0.07, C:0.04, G:0.15, T:0.74
Consensus pattern (23 bp):
TTATTTTTCTATTGTTTTTGTTG
Found at i:4912945 original size:16 final size:17
Alignment explanation
Indices: 4912910--4912947 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
4912900 ATTTTTAAAA
4912910 TAAAAATTTATATTTCT
1 TAAAAATTTATATTTCT
*
4912927 TAAAAATTTATGTTT-T
1 TAAAAATTTATATTTCT
4912943 TAAAA
1 TAAAA
4912948 TTCAAAATTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (17 bp):
TAAAAATTTATATTTCT
Found at i:4913319 original size:29 final size:32
Alignment explanation
Indices: 4913250--4913320 Score: 76
Period size: 31 Copynumber: 2.3 Consensus size: 32
4913240 TATATTTATA
* *
4913250 ATTTTAAATATCTTTTTGTAATATCATAATTT
1 ATTTTTAATATCTTTTTATAATATCATAATTT
* * *
4913282 ATTTGTAATAT-TTTTTATAATTTC-TTATTT
1 ATTTTTAATATCTTTTTATAATATCATAATTT
4913312 -TTTTTAATA
1 ATTTTTAATA
4913321 AATTGAGAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
29 8 0.24
30 5 0.15
31 11 0.33
32 9 0.27
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.62
Consensus pattern (32 bp):
ATTTTTAATATCTTTTTATAATATCATAATTT
Found at i:4913616 original size:19 final size:19
Alignment explanation
Indices: 4913589--4913637 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
4913579 CCTAAACATG
4913589 AACCTTGAACCCTAAAT-TA
1 AACCTTGAACCC-AAATCTA
*
4913608 GAA-CTTGAATCCAAATCTA
1 -AACCTTGAACCCAAATCTA
4913627 AACCTTGAACC
1 AACCTTGAACC
4913638 TTGGGGTTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
18 6 0.24
19 17 0.68
20 2 0.08
ACGTcount: A:0.41, C:0.27, G:0.08, T:0.24
Consensus pattern (19 bp):
AACCTTGAACCCAAATCTA
Found at i:4914915 original size:27 final size:27
Alignment explanation
Indices: 4914861--4914915 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
4914851 AAAAAACGTC
* ***
4914861 AAATTTAGATATCAAATTTGACCCAAA
1 AAATTTAAATATCAAATTTGAAAAAAA
*
4914888 AAATTTAAATATCAAATTTTAAAAAAA
1 AAATTTAAATATCAAATTTGAAAAAAA
4914915 A
1 A
4914916 TATCGGAATT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.56, C:0.09, G:0.04, T:0.31
Consensus pattern (27 bp):
AAATTTAAATATCAAATTTGAAAAAAA
Found at i:4921646 original size:28 final size:26
Alignment explanation
Indices: 4921598--4921650 Score: 63
Period size: 28 Copynumber: 1.9 Consensus size: 26
4921588 AAGAAATTGG
4921598 AATTTTTTTAAGAAACTTAATGATATCA
1 AATTTTTTTAAGAAAC-TAAT-ATATCA
4921626 AATTTTTTTATAGAATA-TAATATAT
1 AATTTTTTTA-AGAA-ACTAATATAT
4921651 GAAAAATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
27 4 0.17
28 14 0.61
29 4 0.17
30 1 0.04
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.47
Consensus pattern (26 bp):
AATTTTTTTAAGAAACTAATATATCA
Found at i:4925480 original size:30 final size:30
Alignment explanation
Indices: 4925444--4925526 Score: 93
Period size: 30 Copynumber: 2.8 Consensus size: 30
4925434 CATGTTCATA
*
4925444 TATAAAAAA-ATTATATACATATATATAGAT
1 TATAAAAAAGATAAT-TACATATATATAGAT
4925474 TATAAAAAAGATAATTACATATATAT--A-
1 TATAAAAAAGATAATTACATATATATAGAT
*
4925501 TATAAACAAATAATAATTACATATAT
1 TATAAA-AAA-GATAATTACATATAT
4925527 TAAAATTAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
27 6 0.12
28 4 0.08
29 14 0.29
30 20 0.42
31 4 0.08
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (30 bp):
TATAAAAAAGATAATTACATATATATAGAT
Found at i:4925690 original size:17 final size:17
Alignment explanation
Indices: 4925668--4925711 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
4925658 TAGGAAATAA
4925668 AAAATGTATATGTATAT
1 AAAATGTATATGTATAT
*
4925685 AAAATGTAAATGTATAT
1 AAAATGTATATGTATAT
*
4925702 -ATATGTATAT
1 AAAATGTATAT
4925712 AAAAGTTATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 8 0.33
17 16 0.67
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (17 bp):
AAAATGTATATGTATAT
Found at i:4925862 original size:20 final size:20
Alignment explanation
Indices: 4925837--4925894 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 20
4925827 AATGATAATG
4925837 ATAACAATAATAATAACTTA
1 ATAACAATAATAATAACTTA
* *
4925857 ATAACAAGAA-AATCAAATTTA
1 ATAACAATAATAAT--AACTTA
*
4925878 ATAAAAATAAATAATAA
1 ATAACAAT-AATAATAA
4925895 ATAAAAAAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
19 3 0.10
20 9 0.30
21 13 0.43
22 2 0.07
23 3 0.10
ACGTcount: A:0.66, C:0.07, G:0.02, T:0.26
Consensus pattern (20 bp):
ATAACAATAATAATAACTTA
Found at i:4926200 original size:23 final size:24
Alignment explanation
Indices: 4926170--4926216 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
4926160 AAATTAAATC
4926170 TCTAAGATTACA-AAATCATATCT
1 TCTAAGATTACATAAATCATATCT
* *
4926193 TCTAAGATTGCATATATCATATCT
1 TCTAAGATTACATAAATCATATCT
4926217 AAGACTATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.38, C:0.17, G:0.06, T:0.38
Consensus pattern (24 bp):
TCTAAGATTACATAAATCATATCT
Found at i:4926803 original size:23 final size:24
Alignment explanation
Indices: 4926774--4926821 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
4926764 TTCTATGTTG
4926774 TAAA-AATAATATTTTTATTCATAAA
1 TAAATAATAAT-TTTTTATT-ATAAA
*
4926799 TAAATTATAATTTTTTATTATAA
1 TAAATAATAATTTTTTATTATAA
4926822 CTTATTTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 4 0.19
25 12 0.57
26 5 0.24
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (24 bp):
TAAATAATAATTTTTTATTATAAA
Found at i:4931020 original size:27 final size:27
Alignment explanation
Indices: 4930990--4931083 Score: 88
Period size: 27 Copynumber: 3.5 Consensus size: 27
4930980 TCTTTTATCT
*
4930990 TTATTTATTTTAAATTTTTTACATTTA
1 TTATTTATTTTAAATTTTTTATATTTA
*
4931017 TTATTTATTTGAAACTGTTTTTATA-TTA
1 TTATTTATTTTAAA-T-TTTTTATATTTA
* *
4931045 -AATTTA-TTTAAATTTCTTT-TATATA
1 TTATTTATTTTAAATTT-TTTATATTTA
*
4931070 TTATTTATTGTAAA
1 TTATTTATTTTAAA
4931084 CTTATGTATG
Statistics
Matches: 54, Mismatches: 7, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
24 4 0.07
25 6 0.11
26 10 0.19
27 23 0.43
28 4 0.07
29 7 0.13
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (27 bp):
TTATTTATTTTAAATTTTTTATATTTA
Found at i:4932319 original size:12 final size:12
Alignment explanation
Indices: 4932302--4932326 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
4932292 ATTTTCCAAG
4932302 AAAATGAAAATA
1 AAAATGAAAATA
4932314 AAAATGAAAATA
1 AAAATGAAAATA
4932326 A
1 A
4932327 CCTTTGTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATGAAAATA
Found at i:4933940 original size:24 final size:24
Alignment explanation
Indices: 4933889--4933941 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
4933879 AGTTGGACCC
****
4933889 CTATGACTACTAAAGTTGAATCTC
1 CTATGACTACTAAAGTTGAAGAAA
*
4933913 CTATGACTACTAAAGTTGCAGAAA
1 CTATGACTACTAAAGTTGAAGAAA
4933937 CTATG
1 CTATG
4933942 GTATAATTAC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (24 bp):
CTATGACTACTAAAGTTGAAGAAA
Found at i:4934399 original size:21 final size:21
Alignment explanation
Indices: 4934375--4934419 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
4934365 CTTAAAGCGA
4934375 AGGTAGCATCGAGAGAAGCAG
1 AGGTAGCATCGAGAGAAGCAG
4934396 AGGTAGCATCGAGAGAAGCAG
1 AGGTAGCATCGAGAGAAGCAG
4934417 AGG
1 AGG
4934420 CTCAAAGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.38, C:0.13, G:0.40, T:0.09
Consensus pattern (21 bp):
AGGTAGCATCGAGAGAAGCAG
Found at i:4934743 original size:11 final size:11
Alignment explanation
Indices: 4934727--4934754 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
4934717 GTTGTTACAG
4934727 GAAAATATGTT
1 GAAAATATGTT
4934738 GAAAATATGTT
1 GAAAATATGTT
4934749 GAAAAT
1 GAAAAT
4934755 TTGGGTTCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.18, T:0.32
Consensus pattern (11 bp):
GAAAATATGTT
Found at i:4935844 original size:26 final size:27
Alignment explanation
Indices: 4935815--4935870 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
4935805 AAATCACAGA
* * *
4935815 CCCAAAATCT-AACCCAATTAGCTTAG
1 CCCAAAACCTAAACCCAATTAACCTAG
4935841 CCC-AAACCTAAACCCAATTAACCTAG
1 CCCAAAACCTAAACCCAATTAACCTAG
4935867 CCCA
1 CCCA
4935871 GCTAATGTGC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.39, C:0.38, G:0.05, T:0.18
Consensus pattern (27 bp):
CCCAAAACCTAAACCCAATTAACCTAG
Found at i:4937383 original size:11 final size:11
Alignment explanation
Indices: 4937367--4937392 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
4937357 TTGTTATCAC
4937367 TGTTTTTTTTT
1 TGTTTTTTTTT
4937378 TGTTTTTTTTT
1 TGTTTTTTTTT
4937389 TGTT
1 TGTT
4937393 CCTTTGTCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (11 bp):
TGTTTTTTTTT
Found at i:4938946 original size:18 final size:18
Alignment explanation
Indices: 4938916--4938950 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
4938906 CCTAGGAAGG
4938916 ATTTTCTTTTTTCTTTTT
1 ATTTTCTTTTTTCTTTTT
4938934 ATTTT-TTTATTTCTTTT
1 ATTTTCTTT-TTTCTTTT
4938951 CAGTTAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.83
Consensus pattern (18 bp):
ATTTTCTTTTTTCTTTTT
Found at i:4939692 original size:18 final size:18
Alignment explanation
Indices: 4939671--4939731 Score: 68
Period size: 18 Copynumber: 3.3 Consensus size: 18
4939661 ATTCATATGT
*
4939671 ATTTTATAGTATATATAC
1 ATTTTATAATATATATAC
* *
4939689 ATTTCATAATATTTATAC
1 ATTTTATAATATATATAC
*
4939707 ATTTTCTATAATATACATAC
1 A-TTT-TATAATATATATAC
4939727 ATTTT
1 ATTTT
4939732 TATATCTTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
18 17 0.49
19 6 0.17
20 12 0.34
ACGTcount: A:0.38, C:0.10, G:0.02, T:0.51
Consensus pattern (18 bp):
ATTTTATAATATATATAC
Found at i:4939717 original size:20 final size:20
Alignment explanation
Indices: 4939675--4939735 Score: 74
Period size: 20 Copynumber: 3.2 Consensus size: 20
4939665 ATATGTATTT
*
4939675 TATAGTATATATACA-TTTC
1 TATAATATATATACATTTTC
*
4939694 -ATAATATTTATACATTTTC
1 TATAATATATATACATTTTC
*
4939713 TATAATATACATACATTTT-
1 TATAATATATATACATTTTC
4939732 TATA
1 TATA
4939736 TCTTTTAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
18 12 0.33
19 8 0.22
20 16 0.44
ACGTcount: A:0.39, C:0.10, G:0.02, T:0.49
Consensus pattern (20 bp):
TATAATATATATACATTTTC
Found at i:4945546 original size:121 final size:125
Alignment explanation
Indices: 4945308--4946021 Score: 717
Period size: 132 Copynumber: 5.5 Consensus size: 125
4945298 CTGCATCGAC
* * * ** *
4945308 AGTGGAGCAGGTCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGAAGTTGCAGTGGAGTACATTGAAGCCA
*
4945373 GTAA-TTCTACTTCCCTGGTCAGCAGTGGAATAGATTGAAGATTTTAGATCTTGCCTCCCTAAGC
66 GTAACTTC--CTT--C----CAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAAGC
4945437 AGT
123 AGT
* *
4945440 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTAAAGTTGCAGTGTAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGAAGTTGCAGTGGAGTACATTGAAGCCA
*
4945505 GTAA-TT-C-T-CAGCAGCGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAAGCAGT
66 GTAACTTCCTTCCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAAGCAGT
* *
4945561 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTAAAGTTGCAGTAGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGAAGTTGCAGTGGAGTACATTGAAGCCA
* * *
4945626 GTAA-TTCTATTTTCCTGGGTAGCAGCGGAATAGATTGAAGATTTTAGATCTTGCCTCCCTAAGC
66 GTAACTTC---CTTCC-----AGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAAGC
4945690 AGT
123 AGT
* *
4945693 AGTGGAGCAGATCGTAGATGGCGAATTTTACCTCCCTGAAGTTGCAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGAAGTTGCAGTGGAGTACATTGAAGCCA
* *
4945758 GTAA-TTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCTTAAGC
66 GTAACTTC--CTT--C----CAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAAGC
4945822 AGT
123 AGT
* * * * ** * *
4945825 AGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCTTGTGGTTACAGTGGAGTACATTAAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGAAGTTGCAGTGGAGTACATTGAAGCCA
* * * * * *
4945890 ATAA-TTCTACTTCCCTGGGTAGCAGTGGAATAGTTTGAAGATTTCATATATTGTCTCCTTAAGC
66 GTAACTTC--CTT-CC-----AGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAAGC
4945954 AGT
123 AGT
* * * * * *
4945957 AGTAGAGTAGA-CTGAAGATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAATAGATTGAAGCC
1 AGTGGAGCAGATC-GAAGATGGCGGATTTTACCTCCCTGAAGTTGCAGTGGAGTACATTGAAGCC
4946021 A
65 A
4946022 CCAATCCTAT
Statistics
Matches: 512, Mismatches: 47, Indels: 46
0.85 0.08 0.08
Matches are distributed among these distances:
121 115 0.22
126 1 0.00
127 2 0.00
128 1 0.00
129 1 0.00
131 5 0.01
132 385 0.75
133 1 0.00
137 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (125 bp):
AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGAAGTTGCAGTGGAGTACATTGAAGCCA
GTAACTTCCTTCCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAAGCAGT
Found at i:4945756 original size:253 final size:258
Alignment explanation
Indices: 4945308--4946021 Score: 992
Period size: 264 Copynumber: 2.8 Consensus size: 258
4945298 CTGCATCGAC
* *
4945308 AGTGGAGCAGGTCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCAAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
4945373 GTAATTCTACTTCCCT-GGTCAGCAGTGGAATAGATTGAAGATTTTAGATCTTGCCTCCCTAAGC
66 GTAATTCTACTTCCCTGGGT-AGCAGTGGAATAGATTGAAGATTTTAGATCTTGCCTCCCTAAGC
* *
4945437 AGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTAAAGTTGCAGTGTAGTACATTGAAG
130 AGTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGAAGTTGCAGTGGAGTACATTGAAG
4945502 CCAGT-A-A-TT-CT-CAGCAGCGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAAGCAGT
195 CCAGTAATACTTCCTGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAAGCAGT
* *** * *
4945561 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTAAAGTTGCAGTAGAGTACATTGAAGCCA
1 AGTGGAGCAGATCAAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* * *
4945626 GTAATTCTATTTTCCTGGGTAGCAGCGGAATAGATTGAAGATTTTAGATCTTGCCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGGTAGCAGTGGAATAGATTGAAGATTTTAGATCTTGCCTCCCTAAGCA
* *
4945691 GTAGTGGAGCAGATCGTAGATGGCGAATTTTACCTCCCTGAAGTTGCAGTGGAGTACATTGAAGC
131 GTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGAAGTTGCAGTGGAGTACATTGAAGC
* * *
4945756 CAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCTTAAG
196 CAGTAA---TACTT-CCT--GCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAAG
4945821 CAGT
255 CAGT
* * * *
4945825 AGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCTTGTGGTTACAGTGGAGTACATTAAAGCCA
1 AGTGGAGCAGATCAAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* * * * * * *
4945890 ATAATTCTACTTCCCTGGGTAGCAGTGGAATAGTTTGAAGATTTCATATATTGTCTCCTTAAGCA
66 GTAATTCTACTTCCCTGGGTAGCAGTGGAATAGATTGAAGATTTTAGATCTTGCCTCCCTAAGCA
* * * * * *
4945955 GTAGTAGAGTAGA-CTGAAGATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAATAGATTGAAG
131 GTAGTGGAGCAGATC-GAAGATGGCGGATTTTACCTCCCTGAAGTTGCAGTGGAGTACATTGAAG
4946019 CCA
195 CCA
4946022 CCAATCCTAT
Statistics
Matches: 402, Mismatches: 46, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
253 180 0.45
254 4 0.01
258 1 0.00
259 2 0.00
261 2 0.00
263 1 0.00
264 212 0.53
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (258 bp):
AGTGGAGCAGATCAAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
GTAATTCTACTTCCCTGGGTAGCAGTGGAATAGATTGAAGATTTTAGATCTTGCCTCCCTAAGCA
GTAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGAAGTTGCAGTGGAGTACATTGAAGC
CAGTAATACTTCCTGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAAGCAGT
Found at i:4946709 original size:18 final size:18
Alignment explanation
Indices: 4946679--4946713 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
4946669 CCTAGGAAGG
4946679 ATTTTCTTTTTTCTTTTT
1 ATTTTCTTTTTTCTTTTT
4946697 ATTTT-TTTATTTCTTTT
1 ATTTTCTTT-TTTCTTTT
4946714 CGGTTAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.83
Consensus pattern (18 bp):
ATTTTCTTTTTTCTTTTT
Found at i:4946805 original size:18 final size:18
Alignment explanation
Indices: 4946782--4946827 Score: 92
Period size: 18 Copynumber: 2.6 Consensus size: 18
4946772 TCCGTCGCAA
4946782 TCGGAGGCCGGGGCGTCG
1 TCGGAGGCCGGGGCGTCG
4946800 TCGGAGGCCGGGGCGTCG
1 TCGGAGGCCGGGGCGTCG
4946818 TCGGAGGCCG
1 TCGGAGGCCG
4946828 TGGGATGGCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.07, C:0.28, G:0.54, T:0.11
Consensus pattern (18 bp):
TCGGAGGCCGGGGCGTCG
Found at i:4947474 original size:18 final size:18
Alignment explanation
Indices: 4947453--4947513 Score: 68
Period size: 18 Copynumber: 3.3 Consensus size: 18
4947443 ATTCATATGT
*
4947453 ATTTTATAGTATATATAC
1 ATTTTATAATATATATAC
* *
4947471 ATTTCATAATATCTATAC
1 ATTTTATAATATATATAC
*
4947489 ATTTTCTATAATATACATAC
1 A-TTT-TATAATATATATAC
4947509 ATTTT
1 ATTTT
4947514 TATATCTTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
18 17 0.49
19 6 0.17
20 12 0.34
ACGTcount: A:0.38, C:0.11, G:0.02, T:0.49
Consensus pattern (18 bp):
ATTTTATAATATATATAC
Found at i:4947499 original size:20 final size:21
Alignment explanation
Indices: 4947457--4947517 Score: 71
Period size: 20 Copynumber: 3.2 Consensus size: 21
4947447 ATATGTATTT
*
4947457 TATAGTATA-TATACA-TTTC
1 TATAATATACTATACATTTTC
4947476 -ATAATAT-CTATACATTTTC
1 TATAATATACTATACATTTTC
4947495 TATAATATAC-ATACATTTT-
1 TATAATATACTATACATTTTC
4947514 TATA
1 TATA
4947518 TCTTTTAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
18 12 0.32
19 8 0.22
20 16 0.43
21 1 0.03
ACGTcount: A:0.39, C:0.11, G:0.02, T:0.48
Consensus pattern (21 bp):
TATAATATACTATACATTTTC
Found at i:4948928 original size:18 final size:18
Alignment explanation
Indices: 4948870--4948930 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
4948860 ATTTTTAAAT
4948870 TTTTAAATATTTATAAAAA
1 TTTTAAA-ATTTATAAAAA
** ***
4948889 TTCCAAAATTTATAATTT
1 TTTTAAAATTTATAAAAA
*
4948907 TTTTAAAAATTATAAAAA
1 TTTTAAAATTTATAAAAA
4948925 TTTTAA
1 TTTTAA
4948931 TTAATTAATT
Statistics
Matches: 31, Mismatches: 11, Indels: 1
0.72 0.26 0.02
Matches are distributed among these distances:
18 26 0.84
19 5 0.16
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (18 bp):
TTTTAAAATTTATAAAAA
Found at i:4949601 original size:16 final size:17
Alignment explanation
Indices: 4949580--4949620 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
4949570 TAAATATGTT
*
4949580 ATTTTTAG-GTTTTATA
1 ATTTTTAGAGTTTTAAA
4949596 ATTTTT-GAGTTTTAAA
1 ATTTTTAGAGTTTTAAA
4949612 ATTTTTAGA
1 ATTTTTAGA
4949621 TTCGGATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 1 0.05
16 19 0.86
17 2 0.09
ACGTcount: A:0.29, C:0.00, G:0.12, T:0.59
Consensus pattern (17 bp):
ATTTTTAGAGTTTTAAA
Found at i:4952253 original size:18 final size:19
Alignment explanation
Indices: 4952230--4952271 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
4952220 GAAGTTTTCT
4952230 ATTATTGTAATAT-TGTTA
1 ATTATTGTAATATATGTTA
* *
4952248 ATTATTTTAATATATTTTA
1 ATTATTGTAATATATGTTA
4952267 ATTAT
1 ATTAT
4952272 ATATTAACTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (19 bp):
ATTATTGTAATATATGTTA
Found at i:4952257 original size:9 final size:9
Alignment explanation
Indices: 4952230--4952271 Score: 50
Period size: 10 Copynumber: 4.6 Consensus size: 9
4952220 GAAGTTTTCT
*
4952230 ATTATTGTA
1 ATTATTTTA
4952239 A-TATTGTTA
1 ATTATT-TTA
4952248 ATTATTTTA
1 ATTATTTTA
4952257 ATATATTTTA
1 AT-TATTTTA
4952267 ATTAT
1 ATTAT
4952272 ATATTAACTG
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
8 4 0.14
9 12 0.41
10 13 0.45
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (9 bp):
ATTATTTTA
Found at i:4955432 original size:16 final size:17
Alignment explanation
Indices: 4955389--4955434 Score: 53
Period size: 16 Copynumber: 2.8 Consensus size: 17
4955379 AAATATATAT
*
4955389 TTTTATAATTTTCAATAA
1 TTTTA-AATTTTTAATAA
4955407 TTTT-AA-TTTTAA-AA
1 TTTTAAATTTTTAATAA
4955421 TTTTAAATTTTTAA
1 TTTTAAATTTTTAA
4955435 CAAATTGATT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
14 6 0.24
15 7 0.28
16 8 0.32
18 4 0.16
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (17 bp):
TTTTAAATTTTTAATAA
Found at i:4966387 original size:2 final size:2
Alignment explanation
Indices: 4966380--4966404 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
4966370 AATTATTTAA
4966380 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
4966405 AAAGGTAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4966656 original size:21 final size:20
Alignment explanation
Indices: 4966618--4966657 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
4966608 TTTCATTTAC
*
4966618 CTTTTTTTCTTCTTCTTTTT
1 CTTTTTTTCTTCTCCTTTTT
*
4966638 CTTTTCTTTGTTCTCCTTTT
1 CTTTT-TTTCTTCTCCTTTT
4966658 AATTCTTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.00, C:0.23, G:0.03, T:0.75
Consensus pattern (20 bp):
CTTTTTTTCTTCTCCTTTTT
Found at i:4973097 original size:42 final size:42
Alignment explanation
Indices: 4973038--4973119 Score: 155
Period size: 42 Copynumber: 2.0 Consensus size: 42
4973028 GTGTATCCTG
4973038 CAATTCCATGCCAATTACATGAATGGAAGTCTTTCCTTTTCC
1 CAATTCCATGCCAATTACATGAATGGAAGTCTTTCCTTTTCC
*
4973080 CAATTCCATGCCAATTACATGAATGGAAGTCTTTTCTTTT
1 CAATTCCATGCCAATTACATGAATGGAAGTCTTTCCTTTT
4973120 ATTGGAAAGG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.27, C:0.23, G:0.12, T:0.38
Consensus pattern (42 bp):
CAATTCCATGCCAATTACATGAATGGAAGTCTTTCCTTTTCC
Found at i:4981467 original size:28 final size:23
Alignment explanation
Indices: 4981443--4981489 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
4981433 TTTAATATAG
4981443 ATAT-TCTATTATTATATTACAA
1 ATATGTCTATTATTATATTACAA
4981465 ATATGTCTATTATTATATTACAA
1 ATATGTCTATTATTATATTACAA
4981488 AT
1 AT
4981490 TATAAAATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 4 0.17
23 20 0.83
ACGTcount: A:0.40, C:0.09, G:0.02, T:0.49
Consensus pattern (23 bp):
ATATGTCTATTATTATATTACAA
Found at i:4986171 original size:20 final size:19
Alignment explanation
Indices: 4986128--4986172 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
4986118 CCCATTTATT
*
4986128 TATTTTTTTCTTTTTCAAC
1 TATTTTTTTCATTTTCAAC
* *
4986147 GATTTCTTTTCATTTTCACC
1 TATTT-TTTTCATTTTCAAC
4986167 TATTTT
1 TATTTT
4986173 GTTTTTAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.16, C:0.18, G:0.02, T:0.64
Consensus pattern (19 bp):
TATTTTTTTCATTTTCAAC
Found at i:4993085 original size:27 final size:27
Alignment explanation
Indices: 4993052--4993107 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
4993042 TTAGTCTCTC
* *
4993052 TCAAAAAAATTAAAATAAATTTTAAAAT
1 TCAAAATAATTAAAA-AAATTTCAAAAT
* *
4993080 TCAAAATATTTATAAAAATTTCAAAAT
1 TCAAAATAATTAAAAAAATTTCAAAAT
4993107 T
1 T
4993108 TATATTTTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 12 0.50
28 12 0.50
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (27 bp):
TCAAAATAATTAAAAAAATTTCAAAAT
Found at i:4993095 original size:18 final size:19
Alignment explanation
Indices: 4993056--4993120 Score: 55
Period size: 19 Copynumber: 3.3 Consensus size: 19
4993046 TCTCTCTCAA
4993056 AAAAATT-AAAATAAATTTT
1 AAAAATTCAAAAT-AATTTT
4993075 -AAAATTCAAAAT-ATTTAT
1 AAAAATTCAAAATAATTT-T
4993093 AAAAATTTCAAAATTTATATTTT
1 AAAAA-TTCAAAA--TA-ATTTT
4993116 AAAAA
1 AAAAA
4993121 AGATAATTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
17 4 0.11
18 7 0.18
19 9 0.24
20 7 0.18
22 1 0.03
23 6 0.16
24 4 0.11
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAAATTCAAAATAATTTT
Found at i:4997655 original size:16 final size:15
Alignment explanation
Indices: 4997609--4997660 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
4997599 AGAGTAAAAA
*
4997609 AGAAAATTGAAATGAT
1 AGAAAATT-AAAGGAT
* *
4997625 AGAAGATTTAAGGAT
1 AGAAAATTAAAGGAT
4997640 AGAAAATTAAAAGGAT
1 AGAAAATT-AAAGGAT
*
4997656 GGAAA
1 AGAAA
4997661 TCATAAATTT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
15 12 0.41
16 17 0.59
ACGTcount: A:0.56, C:0.00, G:0.23, T:0.21
Consensus pattern (15 bp):
AGAAAATTAAAGGAT
Found at i:4999262 original size:3 final size:3
Alignment explanation
Indices: 4999248--4999282 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
4999238 TGTCGATGCC
*
4999248 GAT GAG GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
4999283 CGACGACGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.34, C:0.00, G:0.37, T:0.29
Consensus pattern (3 bp):
GAT
Found at i:5001005 original size:26 final size:27
Alignment explanation
Indices: 5000934--5001010 Score: 84
Period size: 28 Copynumber: 2.7 Consensus size: 27
5000924 AAATATTAAT
5000934 AAAATATTATAAAGAAATTAGAAATGATAGA
1 AAAATA-TAT-AA-AAATTA-AAATGATAGA
*
5000965 AAATTATATCAAAAATTAAAATGATA-A
1 AAAATATAT-AAAAATTAAAATGATAGA
5000992 AAGAATATATAAAAATTAA
1 AA-AATATATAAAAATTAA
5001011 TAAAAAAAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
27 12 0.29
28 14 0.33
29 6 0.14
30 5 0.12
31 5 0.12
ACGTcount: A:0.64, C:0.01, G:0.08, T:0.27
Consensus pattern (27 bp):
AAAATATATAAAAATTAAAATGATAGA
Found at i:5001540 original size:34 final size:35
Alignment explanation
Indices: 5001485--5001550 Score: 82
Period size: 34 Copynumber: 1.9 Consensus size: 35
5001475 TTTACAAATT
5001485 ATTTTTAATAAAATAAATA-TTTTATTATTTTCCA
1 ATTTTTAATAAAATAAATATTTTTATTATTTTCCA
** *
5001519 ATTTTT-ATATAAATATTTATTTTTATTTTTTT
1 ATTTTTAATA-AAATAAATATTTTTATTATTTT
5001551 AAAATATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 3 0.11
34 13 0.48
35 11 0.41
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (35 bp):
ATTTTTAATAAAATAAATATTTTTATTATTTTCCA
Found at i:5003665 original size:17 final size:19
Alignment explanation
Indices: 5003645--5003687 Score: 56
Period size: 17 Copynumber: 2.4 Consensus size: 19
5003635 CATTAAAAAA
5003645 ATAAACATA-TACT-AAAT
1 ATAAACATACTACTCAAAT
*
5003662 ATAAA-ATACTACTCTAAT
1 ATAAACATACTACTCAAAT
5003680 ATAAACAT
1 ATAAACAT
5003688 TAAATTAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 3 0.14
17 9 0.41
18 8 0.36
19 2 0.09
ACGTcount: A:0.56, C:0.14, G:0.00, T:0.30
Consensus pattern (19 bp):
ATAAACATACTACTCAAAT
Found at i:5005165 original size:29 final size:29
Alignment explanation
Indices: 5005123--5005178 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
5005113 TTAAAAAAGG
*
5005123 TTGAAACTAATACATTCTTGGCAAATTAT
1 TTGAAACTAATACATTCTTGACAAATTAT
*
5005152 TTGAAATTAATACATTCTTGACAAATT
1 TTGAAACTAATACATTCTTGACAAATT
5005179 TAACTTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.39
Consensus pattern (29 bp):
TTGAAACTAATACATTCTTGACAAATTAT
Found at i:5008130 original size:27 final size:25
Alignment explanation
Indices: 5008100--5008149 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
5008090 CACATAATCG
5008100 GGAAGCCCTCTCTTGAGCCAAATAACA
1 GGAAGCCCT-TC-TGAGCCAAATAACA
* *
5008127 GGAAGCTCTTCTGAGCCATATAA
1 GGAAGCCCTTCTGAGCCAAATAA
5008150 TGAGAAGCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 11 0.52
26 2 0.10
27 8 0.38
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (25 bp):
GGAAGCCCTTCTGAGCCAAATAACA
Found at i:5008357 original size:26 final size:26
Alignment explanation
Indices: 5008287--5008358 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 26
5008277 AAGTTCAAGC
5008287 GAGCCATAT--CGGGAAGCTCACAAA
1 GAGCCATATAACGGGAAGCTCACAAA
* * *
5008311 GAGCC-TTTAATCAGGAAGCTCACGAA
1 GAGCCATATAA-CGGGAAGCTCACAAA
*
5008337 GAGCCATATAACGGGATGCTCA
1 GAGCCATATAACGGGAAGCTCA
5008359 TAAGAGCTAC
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
23 2 0.05
24 5 0.13
26 27 0.71
27 4 0.11
ACGTcount: A:0.35, C:0.24, G:0.25, T:0.17
Consensus pattern (26 bp):
GAGCCATATAACGGGAAGCTCACAAA
Found at i:5014113 original size:66 final size:66
Alignment explanation
Indices: 5013992--5014133 Score: 151
Period size: 66 Copynumber: 2.2 Consensus size: 66
5013982 TGTTTAGTAA
* * * * * * * *
5013992 CTTGAGAAGACTCGATATCTCGTTTAGGATCTTGGGATTGAGAAGGCTTGTTATCTTGTTCAAGA
1 CTTGGGAAGACTCGATATCGCGTTCAAGAGCTTGGGATTGAGAAAGCTTGATATCTCGTTCAAGA
5014057 G
66 G
* * * *
5014058 TTTGGGAAGACTCGATATCGCGTTCAAGAGCTTGGGATTTAGAATATC-TGATATCTCGTTCAGG
1 CTTGGGAAGACTCGATATCGCGTTCAAGAGCTTGGGATTGAGAA-AGCTTGATATCTCGTTCAAG
5014122 AG
65 AG
*
5014124 CTTGGCAAGA
1 CTTGGGAAGA
5014134 TCTGGTATTT
Statistics
Matches: 61, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
66 60 0.98
67 1 0.02
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.32
Consensus pattern (66 bp):
CTTGGGAAGACTCGATATCGCGTTCAAGAGCTTGGGATTGAGAAAGCTTGATATCTCGTTCAAGA
G
Found at i:5024526 original size:24 final size:24
Alignment explanation
Indices: 5024497--5024548 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
5024487 TCGAATAGTG
5024497 TATATACATATACATTATAAAATA
1 TATATACATATACATTATAAAATA
* * **
5024521 TATATATATTTGGATTATAAAATA
1 TATATACATATACATTATAAAATA
5024545 TATA
1 TATA
5024549 AAACTATAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (24 bp):
TATATACATATACATTATAAAATA
Found at i:5024560 original size:18 final size:18
Alignment explanation
Indices: 5024539--5024576 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
5024529 TTTGGATTAT
5024539 AAAATA-TATAAAACTATA
1 AAAATATTATAAAA-TATA
5024557 AAAATATTATAAAATATA
1 AAAATATTATAAAATATA
5024575 AA
1 AA
5024577 TATAGGTGCG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (18 bp):
AAAATATTATAAAATATA
Found at i:5024570 original size:10 final size:10
Alignment explanation
Indices: 5024534--5024573 Score: 50
Period size: 9 Copynumber: 4.2 Consensus size: 10
5024524 ATATATTTGG
5024534 ATTATAAAAT
1 ATTATAAAAT
5024544 A-TATAAAACT
1 ATTATAAAA-T
5024554 A-TA-AAAAT
1 ATTATAAAAT
5024562 ATTATAAAAT
1 ATTATAAAAT
5024572 AT
1 AT
5024574 AAATATAGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
8 2 0.07
9 13 0.48
10 12 0.44
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (10 bp):
ATTATAAAAT
Found at i:5026177 original size:44 final size:44
Alignment explanation
Indices: 5026129--5026445 Score: 187
Period size: 44 Copynumber: 7.2 Consensus size: 44
5026119 CTGTAACCTC
* * *
5026129 AGGGAGGTAAAATCTGCCATCTTTGATCTACTCTACTAATGCCT
1 AGGGAGATAAAATCTGCCATCTTTAATCTACTCCACTAATGCCT
* ** * ** *
5026173 AGGGAGATAAGATCTGTAATCTTTAATCTATTCCACTGCTGCCC
1 AGGGAGATAAAATCTGCCATCTTTAATCTACTCCACTAATGCCT
* * *** * *
5026217 AGGGAGATAGAAT-TACTGGCTTCAATGTACTCCACTGTAA--CCT
1 AGGGAGATAAAATCTGCCATCTTTAATCTACTCCAC--TAATGCCT
* * *
5026260 CAGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCCT
1 -AGGGAGATAAAATCTGCCATCTTTAATCTACTCCACTAATGCCT
* * * *** * *
5026305 AGAGAGATAGAAT-TACTGGCTTCAATGTACTCCACTGTAA--CCT
1 AGGGAGATAAAATCTGCCATCTTTAATCTACTCCAC--TAATGCCT
* * *
5026348 CAGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCCT
1 -AGGGAGATAAAATCTGCCATCTTTAATCTACTCCACTAATGCCT
* ** * * * * *
5026393 AGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTACTACCC
1 AGGGAGATAAAATCTGCCATCTTTAATCTACTCCACTAATGCCT
5026437 AGGGAGATA
1 AGGGAGATA
5026446 GAATTACTGG
Statistics
Matches: 197, Mismatches: 64, Indels: 24
0.69 0.22 0.08
Matches are distributed among these distances:
43 38 0.19
44 120 0.61
45 39 0.20
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (44 bp):
AGGGAGATAAAATCTGCCATCTTTAATCTACTCCACTAATGCCT
Found at i:5026238 original size:132 final size:133
Alignment explanation
Indices: 5026022--5026313 Score: 462
Period size: 132 Copynumber: 2.2 Consensus size: 133
5026012 CCGTCGTCAG
* * * * *
5026022 TCTACTCCACTACTGCTTAGGGAGATAATATCTGCTATTCTTCGATCGATTCCATTGTCGACCAG
1 TCTACTCCACTACTGCCTAGGGAGATAAGATCTGCTAATCTTCAATCGATTCCACTGTCGACCAG
5026087 GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTT
66 GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTT
5026152 TGA
131 TGA
* * * * *
5026155 TCTACTCTACTAATGCCTAGGGAGATAAGATCTG-TAATCTTTAATCTATTCCACTG-CTGCCCA
1 TCTACTCCACTACTGCCTAGGGAGATAAGATCTGCTAATCTTCAATCGATTCCACTGTC-GACCA
5026218 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCT
65 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCT
5026283 TTGA
130 TTGA
*
5026287 TCTACTCCACTACTGCCTAGAGAGATA
1 TCTACTCCACTACTGCCTAGGGAGATA
5026314 GAATTACTGG
Statistics
Matches: 145, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
131 1 0.01
132 114 0.79
133 30 0.21
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (133 bp):
TCTACTCCACTACTGCCTAGGGAGATAAGATCTGCTAATCTTCAATCGATTCCACTGTCGACCAG
GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTT
TGA
Found at i:5026265 original size:88 final size:88
Alignment explanation
Indices: 5026173--5026401 Score: 377
Period size: 88 Copynumber: 2.6 Consensus size: 88
5026163 ACTAATGCCT
* * ** * * * *
5026173 AGGGAGATAAGATCTGTAATCTTTAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCT
1 AGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCCTAGGGAGATAGAATTACTGGCT
5026238 TCAATGTACTCCACTGTAACCTC
66 TCAATGTACTCCACTGTAACCTC
*
5026261 AGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCCTAGAGAGATAGAATTACTGGCT
1 AGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCCTAGGGAGATAGAATTACTGGCT
5026326 TCAATGTACTCCACTGTAACCTC
66 TCAATGTACTCCACTGTAACCTC
5026349 AGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCCTAGGGAGATA
1 AGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCCTAGGGAGATA
5026402 AGATCTGTAA
Statistics
Matches: 131, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 131 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (88 bp):
AGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCCTAGGGAGATAGAATTACTGGCT
TCAATGTACTCCACTGTAACCTC
Found at i:5026340 original size:220 final size:220
Alignment explanation
Indices: 5026088--5026509 Score: 781
Period size: 220 Copynumber: 1.9 Consensus size: 220
5026078 GTCGACCAGG
5026088 GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTT
1 GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTT
* * * *
5026153 GATCTACTCTACTAATGCCTAGGGAGATAAGATCTGTAATCTTTAATCTATTCCACTGCTGCCCA
66 GATCTACTCCACTAATGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTACTACCCA
*
5026218 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCT
131 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAAACTCAGGGAGGTAAAATCTGCCATCT
*
5026283 TTGATCTACTCCACTACTGCCTAGA
196 TCGATCTACTCCACTACTGCCTAGA
5026308 GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTT
1 GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTT
*
5026373 GATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTACTACCCA
66 GATCTACTCCACTAATGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTACTACCCA
5026438 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAAACTCAGGGAGGTAAAATCTGCCATCT
131 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAAACTCAGGGAGGTAAAATCTGCCATCT
5026503 TCGATCT
196 TCGATCT
5026510 GCTTCGCTAT
Statistics
Matches: 195, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
220 195 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (220 bp):
GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTT
GATCTACTCCACTAATGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTACTACCCA
GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAAACTCAGGGAGGTAAAATCTGCCATCT
TCGATCTACTCCACTACTGCCTAGA
Found at i:5026352 original size:132 final size:132
Alignment explanation
Indices: 5026084--5026486 Score: 440
Period size: 132 Copynumber: 3.1 Consensus size: 132
5026074 CATTGTCGAC
5026084 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCAT
1 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCAT
* * * * * * *
5026149 CTTTGATCTACTCTACTAATGCCTAGGGAGATAAGATCTGTAAT--CTTTAATCTATTCCACTGC
66 CTTTGATCTACTCCACTACTGCCTAGGGAGAT-AGA-AT-TACTGGCTTCAATGTACTCCACTG-
*
5026212 T-GCC-
127 TAACCT
5026216 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCAT
1 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCAT
*
5026281 CTTTGATCTACTCCACTACTGCCTAGAGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAAC
66 CTTTGATCTACTCCACTACTGCCTAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAAC
5026346 CT
131 CT
* * * *** ** * * * * * **
5026348 CAGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACT-GCCT-AGGGAGATAAGATCTGTA
1 CAGGGAGATAGAAT-TACTGGCTTCAATGTACTCCACT-GTAACCTCAGGGAGGTAAAATCTGCC
** * * *
5026411 ATCTTCAATCTATTCCACTACTACCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTA
64 ATCTTTGATCTACTCCACTACTGCCTAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTA
*
5026476 AACT
129 ACCT
5026480 CAGGGAG
1 CAGGGAG
5026487 GTAAAATCTG
Statistics
Matches: 234, Mismatches: 31, Indels: 12
0.84 0.11 0.04
Matches are distributed among these distances:
129 3 0.01
130 2 0.01
131 20 0.09
132 189 0.81
133 19 0.08
134 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (132 bp):
CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCAT
CTTTGATCTACTCCACTACTGCCTAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAAC
CT
Found at i:5026440 original size:88 final size:87
Alignment explanation
Indices: 5026173--5026442 Score: 303
Period size: 88 Copynumber: 3.1 Consensus size: 87
5026163 ACTAATGCCT
* * ** * * * * * *
5026173 AGGGAGATAAGATCTGTAATCTTTAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCT
1 AGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCCTAGAGAGATAGAATTAAT-GCT
* *
5026238 TCAATGTACTCCACTGTAACCTC
65 TCAATCTACTCCACTCTAACCTC
*
5026261 AGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCCTAGAGAGATAGAATTACTGGCT
1 AGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCCTAGAGAGATAGAATTAAT-GCT
* *
5026326 TCAATGTACTCCACTGTAACCTC
65 TCAATCTACTCCACTCTAACCTC
* *
5026349 AGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAAT-
1 AGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCCTAGAGAGAT-AGA-AT-TAATG
*
5026413 CTTCAATCTATTCCACTACT-ACC-C
63 CTTCAATCTACTCCACT-CTAACCTC
5026437 AGGGAG
1 AGGGAG
5026443 ATAGAATTAC
Statistics
Matches: 163, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
88 137 0.84
89 21 0.13
90 2 0.01
91 3 0.02
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (87 bp):
AGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACTGCCTAGAGAGATAGAATTAATGCTT
CAATCTACTCCACTCTAACCTC
Found at i:5026484 original size:44 final size:45
Alignment explanation
Indices: 5026084--5026495 Score: 173
Period size: 44 Copynumber: 9.4 Consensus size: 45
5026074 CATTGTCGAC
*
5026084 CAGGGAGATAGAAT-TACTGGCTTCAATGTACTCCACTGTAACCT
1 CAGGGAGATAGAATCTACTGGCTTCAATCTACTCCACTGTAACCT
* * * *** ** *
5026128 CAGGGAGGTAAAATCTGCCATCTTTGATCTACTCTAC--TAATGCCT
1 CAGGGAGATAGAATCTACTGGCTTCAATCTACTCCACTGTAA--CCT
* * * *
5026173 -AGGGAGATA-AGATCTGTAAT--CTTTAATCTATTCCACTGCT-GCC-
1 CAGGGAGATAGA-ATC--TACTGGCTTCAATCTACTCCACTG-TAACCT
*
5026216 CAGGGAGATAGAAT-TACTGGCTTCAATGTACTCCACTGTAACCT
1 CAGGGAGATAGAATCTACTGGCTTCAATCTACTCCACTGTAACCT
* * * *** ** * *
5026260 CAGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACT-GCCT
1 CAGGGAGATAGAATCTACTGGCTTCAATCTACTCCACT-GTAACCT
* *
5026305 -AGAGAGATAGAAT-TACTGGCTTCAATGTACTCCACTGTAACCT
1 CAGGGAGATAGAATCTACTGGCTTCAATCTACTCCACTGTAACCT
* * * *** ** * *
5026348 CAGGGAGGTAAAATCTGCCATCTTTGATCTACTCCACTACT-GCCT
1 CAGGGAGATAGAATCTACTGGCTTCAATCTACTCCACT-GTAACCT
* * *
5026393 -AGGGAGATA-AGATCTGTAAT--CTTCAATCTATTCCACTACT-ACC-
1 CAGGGAGATAGA-ATC--TACTGGCTTCAATCTACTCCACT-GTAACCT
* *
5026436 CAGGGAGATAGAAT-TACTGGCTTCAATGTACTCCACTGTAAACT
1 CAGGGAGATAGAATCTACTGGCTTCAATCTACTCCACTGTAACCT
* *
5026480 CAGGGAGGTAAAATCT
1 CAGGGAGATAGAATCT
5026496 GCCATCTTCG
Statistics
Matches: 264, Mismatches: 73, Indels: 61
0.66 0.18 0.15
Matches are distributed among these distances:
41 6 0.02
42 3 0.01
43 58 0.22
44 134 0.51
45 58 0.22
46 4 0.02
47 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (45 bp):
CAGGGAGATAGAATCTACTGGCTTCAATCTACTCCACTGTAACCT
Found at i:5028207 original size:13 final size:14
Alignment explanation
Indices: 5028189--5028221 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
5028179 GTAGAGGTTC
5028189 TTTTTGTT-TTTGT
1 TTTTTGTTCTTTGT
*
5028202 TTTTTGTTCTTTTT
1 TTTTTGTTCTTTGT
5028216 TTTTTG
1 TTTTTG
5028222 CAATGAATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.00, C:0.03, G:0.12, T:0.85
Consensus pattern (14 bp):
TTTTTGTTCTTTGT
Found at i:5032616 original size:21 final size:21
Alignment explanation
Indices: 5032571--5032633 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
5032561 TTTGAACCAT
* *
5032571 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
5032593 TACCATTTCGTACCAATTCCA
1 TACCATTTCGTACCAATTCCA
* *
5032614 TACTATTTCGAACCAATTCC
1 TACCATTTCGTACCAATTCC
5032634 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 24 0.65
22 13 0.35
ACGTcount: A:0.33, C:0.32, G:0.05, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:5033756 original size:15 final size:15
Alignment explanation
Indices: 5033736--5033769 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
5033726 GTTCAACGAA
*
5033736 GAGGCCAACGCAATC
1 GAGGCCAACGAAATC
5033751 GAGGCCAACGAAATC
1 GAGGCCAACGAAATC
5033766 GAGG
1 GAGG
5033770 GAGGTTCGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.35, C:0.26, G:0.32, T:0.06
Consensus pattern (15 bp):
GAGGCCAACGAAATC
Found at i:5037550 original size:21 final size:21
Alignment explanation
Indices: 5037505--5037567 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
5037495 TTTGAACCAT
* *
5037505 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
5037527 TACCATTTCGTACCAATTCCA
1 TACCATTTCGTACCAATTCCA
* *
5037548 TACTATTTCGAACCAATTCC
1 TACCATTTCGTACCAATTCC
5037568 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 24 0.65
22 13 0.35
ACGTcount: A:0.33, C:0.32, G:0.05, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:5038049 original size:16 final size:15
Alignment explanation
Indices: 5038022--5038052 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
5038012 CGCCTCTTTA
5038022 TAATTGAATGCCATG
1 TAATTGAATGCCATG
5038037 TAATTGTAATGCCATG
1 TAATTG-AATGCCATG
5038053 CAATCAGAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.35
Consensus pattern (15 bp):
TAATTGAATGCCATG
Done.