Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60343961
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 596159 characters in sequence are not A, C, G, or T
File 167 of 204
Found at i:50152393 original size:20 final size:21
Alignment explanation
Indices: 50152355--50152395 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
50152345 AATAAATATA
50152355 TATTTTTAAAATAATTTTTTT
1 TATTTTTAAAATAATTTTTTT
50152376 TATTTTTAAAATAATTTTTT
1 TATTTTTAAAATAATTTTTT
50152396 AATGTTTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (21 bp):
TATTTTTAAAATAATTTTTTT
Found at i:50152403 original size:20 final size:21
Alignment explanation
Indices: 50152359--50152403 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
50152349 AATATATATT
* *
50152359 TTTAAAATAATTTTTTTTATT
1 TTTAAAATAATTTTTTTAATG
50152380 TTTAAAATAA-TTTTTTAATG
1 TTTAAAATAATTTTTTTAATG
50152400 TTTA
1 TTTA
50152404 TTTTAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (21 bp):
TTTAAAATAATTTTTTTAATG
Found at i:50156617 original size:21 final size:21
Alignment explanation
Indices: 50156593--50156633 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
50156583 TGTTGTGGTT
*
50156593 TTTCCA-TGTTTTGTTATTGTG
1 TTTCCACT-TTTTGCTATTGTG
50156614 TTTCCACTTTTTGCTATTGT
1 TTTCCACTTTTTGCTATTGT
50156634 TTTACTATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.10, C:0.15, G:0.15, T:0.61
Consensus pattern (21 bp):
TTTCCACTTTTTGCTATTGTG
Found at i:50161070 original size:41 final size:38
Alignment explanation
Indices: 50161060--50161140 Score: 83
Period size: 41 Copynumber: 2.0 Consensus size: 38
50161050 GTTTTAAGTT
50161060 TTTTTAATTAATGT-TTTGATTATATTTTTAAATTTTTTTTA
1 TTTTTAATTAATGTATTT--TT-TATTTTT-AATTTTTTTTA
* **
50161101 TTTTTAATTAATGTATTTTTTTGTTTTTAATCATTTTTA
1 TTTTTAATTAATGTA-TTTTTTATTTTTAATTTTTTTTA
50161140 T
1 T
50161141 AAGCATATTA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
39 10 0.29
40 6 0.17
41 16 0.46
43 3 0.09
ACGTcount: A:0.25, C:0.01, G:0.05, T:0.69
Consensus pattern (38 bp):
TTTTTAATTAATGTATTTTTTATTTTTAATTTTTTTTA
Found at i:50161226 original size:23 final size:23
Alignment explanation
Indices: 50161199--50161270 Score: 76
Period size: 23 Copynumber: 3.1 Consensus size: 23
50161189 TTGATTTTAT
*
50161199 AAATAAAATATTTAAAAATAAAA
1 AAATAAAATAATTAAAAATAAAA
* *
50161222 AAATACATTAATTAAAAAT--AA
1 AAATAAAATAATTAAAAATAAAA
*
50161243 AAATAAACATTAATTAAAAAGAAAA
1 AAATAAA-A-TAATTAAAAATAAAA
50161268 AAA
1 AAA
50161271 CTTGAAACAA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
21 8 0.21
23 26 0.67
25 5 0.13
ACGTcount: A:0.72, C:0.03, G:0.01, T:0.24
Consensus pattern (23 bp):
AAATAAAATAATTAAAAATAAAA
Found at i:50161629 original size:142 final size:140
Alignment explanation
Indices: 50161329--50161717 Score: 439
Period size: 142 Copynumber: 2.8 Consensus size: 140
50161319 ATGGAACCTC
** * **
50161329 AGACTCAAGGATGTAAGCGCAATTATCTAATCATCTAACAAAAGGAGTTAATATGTTAAAAATAT
1 AGACTCAA-GATGTAATTGCAATTATCTAACCATCTAACAAAA-GAACTAATATGTTAAAAATAT
* * * *
50161394 TAATTAAAAAAATTTAAAAAAAACTTGAAGCAACATGAAAT--AAAAAATACAAATGTGAGTAGT
64 TAATT--AAAAATTT--AAAAAGCTTAAAGCAACATGAAATAAAAAAAATACAAATATGAGTAGA
*
50161457 AGAGGAATTGAATTTG
125 AGAGGAATTGAATATG
* * * * *
50161473 GGATTCAATGATGTAATTACAACTATCTAACCATCTAACGAAAGAACTAATATGTTAAAAAATAT
1 AGACTCAA-GATGTAATTGCAATTATCTAACCATCTAACAAAAGAACTAATATGTT-AAAAATAT
*
50161538 TAATTAAAAATTTAAAAAGCTTAAAGCAACATGAAATAAAAAAAATATAAATATGAGTAGAAGAG
64 TAATTAAAAATTTAAAAAGCTTAAAGCAACATGAAATAAAAAAAATACAAATATGAGTAGAAGAG
*
50161603 GAATTTAACTAT-
129 GAATTGAA-TATG
** *
50161615 AGACTCAAGAATGTAATTGCAATTATCTAACCATCTAATTAAAGAACTAATATATT-AAAA-ATT
1 AGACTCAAG-ATGTAATTGCAATTATCTAACCATCTAACAAAAGAACTAATATGTTAAAAATATT
* * *
50161678 AATTAGAAATTAAAAAAGCTTAAAGTAACATGAAA-AAAAA
65 AATTAAAAATTTAAAAAGCTTAAAGCAACATGAAATAAAAA
50161718 TATATGAGTA
Statistics
Matches: 212, Mismatches: 28, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
138 5 0.02
139 35 0.17
140 26 0.12
141 1 0.00
142 85 0.40
143 13 0.06
144 47 0.22
ACGTcount: A:0.52, C:0.09, G:0.12, T:0.27
Consensus pattern (140 bp):
AGACTCAAGATGTAATTGCAATTATCTAACCATCTAACAAAAGAACTAATATGTTAAAAATATTA
ATTAAAAATTTAAAAAGCTTAAAGCAACATGAAATAAAAAAAATACAAATATGAGTAGAAGAGGA
ATTGAATATG
Found at i:50168577 original size:173 final size:173
Alignment explanation
Indices: 50168246--50168565 Score: 387
Period size: 173 Copynumber: 1.8 Consensus size: 173
50168236 CCCATACACC
** * * * *
50168246 AATTGGGACACATGACAATGCGAGAACTAACTAAATCTAGATGGTCACTAAGTGATCGACTATCA
1 AATTGGGACACATGACAACACGAGAACTAACTAAACCCAGATAGTCACTAAGTGATCGACTACCA
** * * * * *
50168311 GCATGCATTGTACCTCCTGTGGGAGGGATCGTCCGTCATTAATCACTTGGTCAGATCTATTGTTA
66 GCATGCATCATACCTCCTGCGGGAGGGATCGTCCGTCATTAACCACTCGGTCAGATCTACTATTA
50168376 ACCAATCCACTAGTAACAGATACACTCTCATCATTCGTGCCCT
131 ACCAATCCACTAGTAACAGATACACTCTCATCATTCGTGCCCT
* * * * * *
50168419 AATTGGGACACATGGCAACACGAGAATTATCTAAACCCAGGTAGTCACTTAGTGATTGACTACCT
1 AATTGGGACACATGACAACACGAGAACTAACTAAACCCAGATAGTCACTAAGTGATCGACTACC-
*
50168484 A-CATGCATCATACCCTCC-GCGGGAGGGATCGTCCGTCCTTAACCACTCGGTC-GAATCTACTA
65 AGCATGCATCATA-CCTCCTGCGGGAGGGATCGTCCGTCATTAACCACTCGGTCAG-ATCTACTA
*
50168546 TTAACTC-ATCCACTATTAAC
128 TTAAC-CAATCCACTAGTAAC
50168566 GAGTGCACTC
Statistics
Matches: 122, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
172 1 0.01
173 114 0.93
174 7 0.06
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (173 bp):
AATTGGGACACATGACAACACGAGAACTAACTAAACCCAGATAGTCACTAAGTGATCGACTACCA
GCATGCATCATACCTCCTGCGGGAGGGATCGTCCGTCATTAACCACTCGGTCAGATCTACTATTA
ACCAATCCACTAGTAACAGATACACTCTCATCATTCGTGCCCT
Found at i:50172316 original size:18 final size:19
Alignment explanation
Indices: 50172293--50172329 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
50172283 TTTTTATCAT
50172293 TCAACTATGAAAA-TTATA
1 TCAACTATGAAAACTTATA
50172311 TCAACTATGAAAACTTATA
1 TCAACTATGAAAACTTATA
50172330 AAATGGTCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.49, C:0.14, G:0.05, T:0.32
Consensus pattern (19 bp):
TCAACTATGAAAACTTATA
Found at i:50186056 original size:26 final size:26
Alignment explanation
Indices: 50186002--50186092 Score: 123
Period size: 26 Copynumber: 3.5 Consensus size: 26
50185992 TCTTATCGTT
* *
50186002 GGTTCTTTGTTCC-TCGCCCTAT-AC
1 GGTTCTTTGTTCCTTTGCCCTCTGAC
*
50186026 TGGTTCTTTGTTCCTTTGCCCTCTGTC
1 -GGTTCTTTGTTCCTTTGCCCTCTGAC
*
50186053 GGTTCTTTGTTCCTTTGCCCTCTGCC
1 GGTTCTTTGTTCCTTTGCCCTCTGAC
50186079 GGTTCTTTGTTCCT
1 GGTTCTTTGTTCCT
50186093 CTTCTCCACC
Statistics
Matches: 60, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
25 13 0.22
26 46 0.77
27 1 0.02
ACGTcount: A:0.02, C:0.31, G:0.19, T:0.48
Consensus pattern (26 bp):
GGTTCTTTGTTCCTTTGCCCTCTGAC
Found at i:50188437 original size:18 final size:18
Alignment explanation
Indices: 50188393--50188440 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
50188383 AAAATATGAG
* *
50188393 AAATGATGCTCACATTTT
1 AAATGATGTTCACATTTC
50188411 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTC
50188429 AAATGATGTTCA
1 AAATGATGTTCA
50188441 AATTGATGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (18 bp):
AAATGATGTTCACATTTC
Found at i:50188963 original size:72 final size:73
Alignment explanation
Indices: 50188863--50189035 Score: 255
Period size: 72 Copynumber: 2.4 Consensus size: 73
50188853 AACAACAATG
* * *
50188863 CTAAA-CTAGTTTTATCAATAGTTATTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTT
1 CTAAATCTAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATGTTCTACTT
50188927 ATTTATGT-
66 ATTT-TGTA
* *
50188935 GT-AATCTAGTTTTATTAATAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATGTTCTACTT
1 CTAAATCTAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATGTTCTACTT
*
50188999 ATTTTTTA
66 ATTTTGTA
50189007 CTAAAT-TAGTTTTATCAATAGTTGTTTAT
1 CTAAATCTAGTTTTATCAATAGTTGTTTAT
50189036 ATGTAATTTT
Statistics
Matches: 90, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
71 4 0.04
72 83 0.92
73 3 0.03
ACGTcount: A:0.25, C:0.06, G:0.13, T:0.55
Consensus pattern (73 bp):
CTAAATCTAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATGTTCTACTT
ATTTTGTA
Found at i:50191113 original size:13 final size:13
Alignment explanation
Indices: 50191079--50191113 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
50191069 CTCAAATTTC
50191079 TCAAAAGCACTTT
1 TCAAAAGCACTTT
* *
50191092 TCCATAGCACTTT
1 TCAAAAGCACTTT
50191105 TCAAAAGCA
1 TCAAAAGCA
50191114 ATGAAAAATT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.37, C:0.26, G:0.09, T:0.29
Consensus pattern (13 bp):
TCAAAAGCACTTT
Found at i:50193997 original size:13 final size:13
Alignment explanation
Indices: 50193981--50194005 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50193971 TTTAAAAAAA
50193981 TATTAAATATAAT
1 TATTAAATATAAT
50193994 TATTAAATATAA
1 TATTAAATATAA
50194006 AATCAGAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
TATTAAATATAAT
Found at i:50195382 original size:154 final size:148
Alignment explanation
Indices: 50195118--50195836 Score: 668
Period size: 154 Copynumber: 4.8 Consensus size: 148
50195108 CCTTTATTTA
* * *
50195118 TATTTTTTTCTCAAATTTTATTACTTT-AAAAAATATATTATTTTTTAATTTTATTATTTTACAT
1 TATTTTTTTCT-GAATTTTATTACTTTAAAAAAATATATTATTTTCT-ATTTTATTATTTTAAAT
* * * *
50195182 TATTTTAGTATATTATTTTTGAAATTTATTCATTTAGTTTGATTTTTT-AATAAATTAAAAAAAA
64 TATTTTAGTACATTATGTTTGAAATGTATTAATTTA-TTTG-TTTTTTAAATAAATTAAAAAAAA
* *
50195246 TCATTATTTCGCCCCTTTGTTCT
127 CCCTTATTTCG-CCCTTTGTTCT
*
50195269 TATTTTTTTCCTGAATTTTCTTACTTTCAATAAAAATATATTATTTTCCTATTTTATTATTTTAA
1 TATTTTTTT-CTGAATTTTATTACTTT-AA-AAAAATATATTATTTT-CTATTTTATTATTTTAA
* *
50195334 ATTATTTTAGTACATTAGGTTTGAAATGTATTAATTTATTATGTTTTTTAAATAAATTTTAAAAA
62 ATTATTTTAGTACATTATGTTTGAAATGTATTAATTTATT-TGTTTTTTAAATAAA-TTAAAAAA
* *
50195399 AACCCTTATTT----C---ATTAT
125 AACCCTTATTTCGCCCTTTGTTCT
* * *
50195416 TATGTTTTTTCAG-ATTTTATTAC-TTAAAAAAA-ATACTATTTTC-----TA--ATTTTATATT
1 TAT-TTTTTTCTGAATTTTATTACTTTAAAAAAATATATTATTTTCTATTTTATTATTTTAAATT
* * * * *
50195471 ATTTTATTACATTATTTTTGAAATGTATTCATTTAGTTTGATTTTTAAGTAAATTTAAAAAAAAC
65 ATTTTAGTACATTATGTTTGAAATGTATTAATTTA-TTTGTTTTTTAAATAAA-TTAAAAAAAAC
* *
50195536 TCTTATTTCGGCCCTTTGTTCG
128 CCTTATTTC-GCCCTTTGTTCT
* * *
50195558 TA-TTTTTTCTCAAATTTTATTACTTTTAATAAAAATATATTATTTTCGCATTTTATTATTTTAC
1 TATTTTTTTCT-GAATTTTATTAC-TTTAA-AAAAATATATTATTTTC-TATTTTATTATTTTAA
* * * * * **
50195622 ATTATTTTAGTACATTATATTTGAAATGTATTAATTTGCTGTATTTTTTAAATAATTTTTTTAAA
62 ATTATTTTAGTACATTATGTTTGAAATGTATTAATTT-ATTTGTTTTTTAAATAA--ATTAAAAA
* *
50195687 AAACCCTTATTTCGACCATTTGTTCA
124 AAACCCTTATTTCG-CCCTTTGTTCT
* * * * * * *
50195713 TATTATTTCCCGGATTTTATTACTTTTAAAAAATATATTATTTTTGTATTTCATTATTTTAAATT
1 TATTTTTTTCTGAATTTTATTACTTTAAAAAAATATATTA-TTTTCTATTTTATTATTTTAAATT
* *
50195778 ATTTTAGTACATTATGTTTGAAATTTATTAATTTACTGTGTTTTTTAAATAAATTAAAA
65 ATTTTAGTACATTATGTTTGAAATGTATTAATTTA-TTTGTTTTTTAAATAAATTAAAA
50195837 GTAATAAAAT
Statistics
Matches: 465, Mismatches: 64, Indels: 78
0.77 0.11 0.13
Matches are distributed among these distances:
134 71 0.15
135 2 0.00
136 2 0.00
139 1 0.00
140 7 0.02
141 1 0.00
142 23 0.05
143 5 0.01
144 6 0.01
145 7 0.02
146 19 0.04
147 8 0.02
148 6 0.01
150 1 0.00
151 26 0.06
152 4 0.01
153 84 0.18
154 132 0.28
155 55 0.12
156 5 0.01
ACGTcount: A:0.32, C:0.08, G:0.06, T:0.54
Consensus pattern (148 bp):
TATTTTTTTCTGAATTTTATTACTTTAAAAAAATATATTATTTTCTATTTTATTATTTTAAATTA
TTTTAGTACATTATGTTTGAAATGTATTAATTTATTTGTTTTTTAAATAAATTAAAAAAAACCCT
TATTTCGCCCTTTGTTCT
Found at i:50195502 original size:288 final size:289
Alignment explanation
Indices: 50195173--50195699 Score: 805
Period size: 288 Copynumber: 1.8 Consensus size: 289
50195163 TAATTTTATT
* *
50195173 ATTTTACATTATTTTAGTATATTATTTTTGAAATTTATTCATTTAGTTTGATTTTTTAA-TAAA-
1 ATTTTACATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTTTGA-TTTTTAAGTAAAT
* * *
50195236 TTAAAAAAAA-TCATTATTTCGCCCCTTTGTTCTTATTTTTT-TCCTGAATTTTCTTACTTTCAA
65 TTAAAAAAAACTC-TTATTTCGCCCCTTTGTTCGTATTTTTTCT-C-AAATTTTATTACTTTCAA
*
50195299 TAAAAATATATTATTTTC-CTATTTTATTATTTTAAATTATTTTAGTACATTAGGTTTGAAATGT
127 TAAAAATATATTATTTTCGC-ATTTTATTATTTTAAATTATTTTAGTACATTAGATTTGAAATGT
* *
50195363 ATTAATTTATTATGTTTTTTAAATAA-ATTTTAAAAAAACCCTTATTTCATTATTATGTTTTTTC
191 ATTAATTTACTATATTTTTTAAATAATATTTTAAAAAAACCCTTATTTCATTATTATGTTTTTTC
50195427 AGATTTTATTACTTAAAAAAAATACTATTTTCTA
256 AGATTTTATTACTTAAAAAAAATACTATTTTCTA
* *
50195461 ATTTTATATTATTTTATTACATTATTTTTGAAATGTATTCATTTAGTTTGATTTTTAAGTAAATT
1 ATTTTACATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTTTGATTTTTAAGTAAATT
* *
50195526 TAAAAAAAACTCTTATTTCGGCCCTTTGTTCGTATTTTTTCTCAAATTTTATTACTTTTAATAAA
66 TAAAAAAAACTCTTATTTCGCCCCTTTGTTCGTATTTTTTCTCAAATTTTATTACTTTCAATAAA
* *
50195591 AATATATTATTTTCGCATTTTATTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAA
131 AATATATTATTTTCGCATTTTATTATTTTAAATTATTTTAGTACATTAGATTTGAAATGTATTAA
* * * *
50195656 TTTGCTGTATTTTTTAAATAATTTTTTTAAAAAACCCTTATTTC
196 TTTACTATATTTTTTAAATAATATTTTAAAAAAACCCTTATTTC
50195700 GACCATTTGT
Statistics
Matches: 215, Mismatches: 18, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
287 7 0.03
288 147 0.68
289 58 0.27
290 3 0.01
ACGTcount: A:0.32, C:0.09, G:0.06, T:0.53
Consensus pattern (289 bp):
ATTTTACATTATTTTAGTACATTATTTTTGAAATGTATTCATTTAGTTTGATTTTTAAGTAAATT
TAAAAAAAACTCTTATTTCGCCCCTTTGTTCGTATTTTTTCTCAAATTTTATTACTTTCAATAAA
AATATATTATTTTCGCATTTTATTATTTTAAATTATTTTAGTACATTAGATTTGAAATGTATTAA
TTTACTATATTTTTTAAATAATATTTTAAAAAAACCCTTATTTCATTATTATGTTTTTTCAGATT
TTATTACTTAAAAAAAATACTATTTTCTA
Found at i:50195780 original size:153 final size:154
Alignment explanation
Indices: 50195461--50195836 Score: 465
Period size: 153 Copynumber: 2.5 Consensus size: 154
50195451 CTATTTTCTA
* * * * * *
50195461 ATTTTATATTATTTTATTACATTATTTTTGAAATGTATTCATTTAG-TTTGA-TTTTTAAGTAAA
1 ATTTTAAATTATTTTAGTACATTATATTTGAAATGTATTAATTT-GCTGT-ATTTTTTAAATAAA
* * * * * *
50195524 TTTAAAAAAAACTCTTATTTCGGCCCTTTGTTCGTATTTTTTCTCAAATTTTATTACTTTTAATA
64 TTTAAAAAAAACCCTTATTTCGACCATTTGTTCATATTATTTCCCAAATTTTATTACTTTTAATA
*
50195589 AAAATATATTATTTTCGCATTTTATT
129 AAAATATATTATTTTCGCATTTCATT
* *
50195615 ATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTGCTGTATTTTTTAAATAATTT
1 ATTTTAAATTATTTTAGTACATTATATTTGAAATGTATTAATTTGCTGTATTTTTTAAATAA-AT
** **
50195680 TTTTAAAAAACCCTTATTTCGACCATTTGTTCATATTATTTCCCGGATTTTATTACTTTT-A-AA
65 TTAAAAAAAACCCTTATTTCGACCATTTGTTCATATTATTTCCCAAATTTTATTACTTTTAATAA
* *
50195743 AAATATATTATTTTTGTATTTCATT
130 AAATATATTATTTTCGCATTTCATT
* * * *
50195768 ATTTTAAATTATTTTAGTACATTATGTTTGAAATTTATTAATTTACTGTGTTTTTTAAATAAA-T
1 ATTTTAAATTATTTTAGTACATTATATTTGAAATGTATTAATTTGCTGTATTTTTTAAATAAATT
50195832 TAAAA
66 TAAAA
50195837 GTAATAAAAT
Statistics
Matches: 191, Mismatches: 28, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
151 4 0.02
153 83 0.43
154 53 0.28
155 51 0.27
ACGTcount: A:0.32, C:0.08, G:0.07, T:0.53
Consensus pattern (154 bp):
ATTTTAAATTATTTTAGTACATTATATTTGAAATGTATTAATTTGCTGTATTTTTTAAATAAATT
TAAAAAAAACCCTTATTTCGACCATTTGTTCATATTATTTCCCAAATTTTATTACTTTTAATAAA
AATATATTATTTTCGCATTTCATT
Found at i:50196092 original size:149 final size:149
Alignment explanation
Indices: 50195927--50196758 Score: 1101
Period size: 150 Copynumber: 5.5 Consensus size: 149
50195917 TACATTTTCA
* *
50195927 AAAATAATGTATAATAATAAAATTA-GAAAATAGTATATTTTTTTAAAGTAATAAAATCCGGAGA
1 AAAATAATGTAAAATAATAAAA-TACGAAAATAATATATTTTTTTAAAGTAATAAAATCCGG-GA
* *
50195991 AAAAAATACGAACAAAGGGCAGAAATAA-GTTTTTTTAATTTATTTAAAAACACAGTAAATTAAT
64 AAAAAATACGAACAAAGGGCAGAAATAAGGTTTTTTTAATTTATTTAAAAACACACTAAATGAAT
* **
50196055 AAATTTCAAACGTAATGTACT
129 ACATTTCAAAAATAATGTACT
* *
50196076 AAAATAATGTAAAATAATAAAATACAAAAATAATATATTTTTATTGAAAGCAATAAAATCCGGGA
1 AAAATAATGTAAAATAATAAAATACGAAAATAATATATTTTT-TT-AAAGTAATAAAATCCGGGA
* * * *
50196141 AAAAAATACGAACAAAGAGCCGAAATAATGTTTTTTTAAAATTTATTTAAAAATCAAACTAAATG
64 AAAAAATACGAACAAAGGGCAGAAATAAGGTTTTTTT--AATTTATTTAAAAA-CACACTAAATG
50196206 AATACATTTCAAAAATAATGTACT
126 AATACATTTCAAAAATAATGTACT
* *
50196230 AAAATAATGTAAAATAATAAAATACGAAAATAATATA--TTATTAAAGTAATAAAATCCGAGAAA
1 AAAATAATGTAAAATAATAAAATACGAAAATAATATATTTTTTTAAAGTAATAAAATCCGGGAAA
* *
50196293 AAAATACGAACAAAGGGCTGAAATAAGGTTTTTTTTTAAATTATTTAAAAAACACACT-AATGAA
66 AAAATACGAACAAAGGGCAGAAATAAGG--TTTTTTTAATTTATTT-AAAAACACACTAAATGAA
50196357 TACATTTCAAAAATAATGTACT
128 TACATTTCAAAAATAATGTACT
* * ** *
50196379 AAAATAATGTAAAATAATAAAATTA-GAAAATAGTATAATTTTTTAAAGTAATAAAATTTGAG-A
1 AAAATAATGTAAAATAATAAAA-TACGAAAATAATATATTTTTTTAAAGTAATAAAATCCGGGAA
* * * *
50196442 AAAAATACGAAAAAAGGCCA-AAATAAGGGTTTTTTTAAATTTATTTAAAAAACACAGTAAATTA
65 AAAAATACGAACAAAGGGCAGAAATAA-GGTTTTTTT-AATTTATTT-AAAAACACACTAAATGA
*
50196506 ATACATTTCAAACATAATGTACT
127 ATACATTTCAAAAATAATGTACT
* **
50196529 AAAATAATGTAAAATAATAAAATACAAAAATAATATATTTTTACTGGAAGTAATAAAATCCGGGA
1 AAAATAATGTAAAATAATAAAATACGAAAATAATATATTTTT--TTAAAGTAATAAAATCCGGGA
* * *
50196594 AAAAAATGCGAACAAATGGTC-GAAATAA-GTTTTTTTAATTTATTTAAAAATCAAACTAAATGA
64 AAAAAATACGAACAAA-GGGCAGAAATAAGGTTTTTTTAATTTATTTAAAAA-CACACTAAATGA
50196657 ATACATTTCAAAAATAATGTACT
127 ATACATTTCAAAAATAATGTACT
**
50196680 AAAATAATGTAAAATAATAAAATTA-GAAAATAATATATTTTTTTAAAGTAATAAAATTTGGGAA
1 AAAATAATGTAAAATAATAAAA-TACGAAAATAATATATTTTTTTAAAGTAATAAAATCCGGGAA
50196744 AAAAATACGAACAAA
65 AAAAATACGAACAAA
50196759 TGGTTGAAAT
Statistics
Matches: 606, Mismatches: 53, Indels: 48
0.86 0.07 0.07
Matches are distributed among these distances:
148 9 0.01
149 156 0.26
150 176 0.29
151 129 0.21
152 34 0.06
153 28 0.05
154 74 0.12
ACGTcount: A:0.53, C:0.07, G:0.09, T:0.30
Consensus pattern (149 bp):
AAAATAATGTAAAATAATAAAATACGAAAATAATATATTTTTTTAAAGTAATAAAATCCGGGAAA
AAAATACGAACAAAGGGCAGAAATAAGGTTTTTTTAATTTATTTAAAAACACACTAAATGAATAC
ATTTCAAAAATAATGTACT
Found at i:50197075 original size:16 final size:18
Alignment explanation
Indices: 50197036--50197069 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
50197026 TAATTTTATA
50197036 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
50197053 ATTTTTATATATTATGT
1 ATATTTATATATTATGT
50197070 AATTTAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:50197545 original size:16 final size:18
Alignment explanation
Indices: 50197524--50197557 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
50197514 ATTTTATTTG
50197524 TTTAAAT-T-AATTTTTA
1 TTTAAATATAAATTTTTA
50197540 TTTAAATATAAATTTTTA
1 TTTAAATATAAATTTTTA
50197558 AAAAAAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 1 0.06
18 8 0.50
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
TTTAAATATAAATTTTTA
Found at i:50198129 original size:17 final size:16
Alignment explanation
Indices: 50198109--50198141 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
50198099 ATAAAATCAA
50198109 TAAATATTATAAAATTT
1 TAAATATTA-AAAATTT
50198126 TAAATATTAAAAATTT
1 TAAATATTAAAAATTT
50198142 ATTAAAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
TAAATATTAAAAATTT
Found at i:50198152 original size:18 final size:19
Alignment explanation
Indices: 50198070--50198170 Score: 72
Period size: 19 Copynumber: 5.6 Consensus size: 19
50198060 GCCTCTGCTT
50198070 TTATTAAAAATTAGAAAAA
1 TTATTAAAAATTAGAAAAA
*
50198089 --ATT-AAAATCA-ATAAAA
1 TTATTAAAAATTAGA-AAAA
* * * *
50198105 TCAATAAATATTA-TAAAA
1 TTATTAAAAATTAGAAAAA
* *
50198123 TT-TTAAATATTA-AAAAT
1 TTATTAAAAATTAGAAAAA
50198140 TTATTAAAAATTAGAAAAA
1 TTATTAAAAATTAGAAAAA
*
50198159 TTATAAAAAATT
1 TTATTAAAAATT
50198171 GTAAAAAAAA
Statistics
Matches: 64, Mismatches: 12, Indels: 12
0.73 0.14 0.14
Matches are distributed among these distances:
15 1 0.02
16 10 0.16
17 17 0.27
18 16 0.25
19 20 0.31
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (19 bp):
TTATTAAAAATTAGAAAAA
Found at i:50198166 original size:9 final size:9
Alignment explanation
Indices: 50198108--50198205 Score: 58
Period size: 9 Copynumber: 10.8 Consensus size: 9
50198098 AATAAAATCA
*
50198108 ATAAATATT
1 ATAAAAATT
50198117 AT-AAAATT
1 ATAAAAATT
* *
50198125 TTAAATATT
1 ATAAAAATT
*
50198134 A-AAAATTT
1 ATAAAAATT
50198142 ATTAAAAATT
1 A-TAAAAATT
*
50198152 AGAAAAATT
1 ATAAAAATT
50198161 ATAAAAAATT
1 AT-AAAAATT
* **
50198171 GTAAAAAAA
1 ATAAAAATT
50198180 ATATAAAA-T
1 ATA-AAAATT
*
50198189 ATATAGAATT
1 ATA-AAAATT
50198199 ATAAAAA
1 ATAAAAA
50198206 AATTATAATT
Statistics
Matches: 67, Mismatches: 16, Indels: 12
0.71 0.17 0.13
Matches are distributed among these distances:
8 12 0.18
9 32 0.48
10 23 0.34
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (9 bp):
ATAAAAATT
Found at i:50198176 original size:19 final size:21
Alignment explanation
Indices: 50198133--50198177 Score: 60
Period size: 19 Copynumber: 2.3 Consensus size: 21
50198123 TTTTAAATAT
*
50198133 TAAAAATTTATTAAAAATTAG
1 TAAAAATTTATAAAAAATTAG
50198154 -AAAAA-TTATAAAAAATT-G
1 TAAAAATTTATAAAAAATTAG
50198172 TAAAAA
1 TAAAAA
50198178 AAATATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 1 0.05
19 16 0.73
20 5 0.23
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.31
Consensus pattern (21 bp):
TAAAAATTTATAAAAAATTAG
Found at i:50198191 original size:28 final size:29
Alignment explanation
Indices: 50198155--50198213 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 29
50198145 AAAAATTAGA
*
50198155 AAAATTATAAAAAATTGTAAAAAAAATAT
1 AAAATTATAAAAAATTATAAAAAAAATAT
* * *
50198184 AAAA-TATATAGAATTATAAAAAAATTAT
1 AAAATTATAAAAAATTATAAAAAAAATAT
50198212 AA
1 AA
50198214 TTTTTCTATA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 22 0.85
29 4 0.15
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (29 bp):
AAAATTATAAAAAATTATAAAAAAAATAT
Found at i:50198346 original size:19 final size:19
Alignment explanation
Indices: 50198324--50198373 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
50198314 TTTTTTTATG
50198324 ATTTTTATAAAATTTTACA
1 ATTTTTATAAAATTTTACA
* * **
50198343 ATTTTTTTTATTTTTTACA
1 ATTTTTATAAAATTTTACA
50198362 ATTTTTATAAAA
1 ATTTTTATAAAA
50198374 AAATCTAATT
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (19 bp):
ATTTTTATAAAATTTTACA
Found at i:50199215 original size:19 final size:20
Alignment explanation
Indices: 50199188--50199230 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
50199178 GGATTGAACT
*
50199188 TAAATTTTTGAATT-TTTAA
1 TAAAATTTTGAATTGTTTAA
50199207 TAAAATTTTGAATTGTTTAA
1 TAAAATTTTGAATTGTTTAA
50199227 -AAAA
1 TAAAA
50199231 GATTACTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (20 bp):
TAAAATTTTGAATTGTTTAA
Found at i:50204486 original size:16 final size:16
Alignment explanation
Indices: 50204467--50204497 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
50204457 ATATATTTCG
*
50204467 TTTTATTTTTTTTATA
1 TTTTATATTTTTTATA
50204483 TTTTATATTTTTTAT
1 TTTTATATTTTTTAT
50204498 TTCTGTGTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTATATTTTTTATA
Found at i:50204846 original size:28 final size:27
Alignment explanation
Indices: 50204809--50204866 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 27
50204799 AGTCTAATCA
* *
50204809 TTTTAAGTTACTTTATATATTATTTTAT
1 TTTTAAGTTACTTTACATATTA-CTTAT
*
50204837 TTTTAAGTTATTTTACATATTACTTAT
1 TTTTAAGTTACTTTACATATTACTTAT
50204864 TTT
1 TTT
50204867 AAAATTAACC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 7 0.26
28 20 0.74
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.64
Consensus pattern (27 bp):
TTTTAAGTTACTTTACATATTACTTAT
Found at i:50208168 original size:12 final size:12
Alignment explanation
Indices: 50208151--50208190 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
50208141 TTATTTAAGG
*
50208151 TTATTATTGCTA
1 TTATTATTACTA
50208163 TTATTATTACTA
1 TTATTATTACTA
*
50208175 TTATTAATTATTA
1 TTATT-ATTACTA
50208188 TTA
1 TTA
50208191 GTTTTTATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 16 0.64
13 9 0.36
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.60
Consensus pattern (12 bp):
TTATTATTACTA
Found at i:50208407 original size:38 final size:38
Alignment explanation
Indices: 50208363--50208436 Score: 96
Period size: 38 Copynumber: 1.9 Consensus size: 38
50208353 AACTTATTTA
50208363 ATATATACATAAATACTCAT-ATTTTTTTATACATATCT
1 ATATATACATAAATACTCATGATTTTTTT-TACATATCT
* * * *
50208401 ATATATATATATATTCTCATGGTTTTTTTTACATAT
1 ATATATACATAAATACTCATGATTTTTTTTACATAT
50208437 ATTAAAATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 24 0.77
39 7 0.23
ACGTcount: A:0.35, C:0.11, G:0.03, T:0.51
Consensus pattern (38 bp):
ATATATACATAAATACTCATGATTTTTTTTACATATCT
Found at i:50209266 original size:109 final size:109
Alignment explanation
Indices: 50209081--50209390 Score: 460
Period size: 109 Copynumber: 2.8 Consensus size: 109
50209071 AAAAATAATA
* * * *
50209081 AAGGTAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCTCTAAGGTGTTGGGTGTCGATTTTTC
1 AAGGCAATGTTTTGCGTTTGGAAATTCGAG-AAACGTGCCCTAAGGTGTTGGGTTTCGA--TTTC
* *
50209146 TCGTTCGACCAAATAGCTAAATATCTTTTTAAAAACTTTTTAAAAAT
63 TCGTTCGACCAAATAGCTAAATATCCTTTTAAAAACTTTTCAAAAAT
* * *
50209193 AAGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTATTGGGTTTCGATTTCTCG
1 AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAACGTGCCCTAAGGTGTTGGGTTTCGATTTCTCG
50209258 TTCGACCAAATAGCTAAATATCCTTTTAAAAACTTTTCAAAAAT
66 TTCGACCAAATAGCTAAATATCCTTTTAAAAACTTTTCAAAAAT
* *
50209302 AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAACGTGCCCTAAGGTGCTGGGTTTCGATTTCACG
1 AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAACGTGCCCTAAGGTGTTGGGTTTCGATTTCTCG
* *
50209367 TT-TAGCCAAATTGCTAAATATCCT
66 TTCGA-CCAAATAGCTAAATATCCT
50209391 CTTGAATTTT
Statistics
Matches: 181, Mismatches: 16, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
108 1 0.01
109 129 0.71
111 23 0.13
112 28 0.15
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (109 bp):
AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAACGTGCCCTAAGGTGTTGGGTTTCGATTTCTCG
TTCGACCAAATAGCTAAATATCCTTTTAAAAACTTTTCAAAAAT
Found at i:50211634 original size:3 final size:3
Alignment explanation
Indices: 50211626--50211673 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
50211616 ATAAAAAGTA
50211626 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
50211674 CAAAAGAATC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:50217598 original size:18 final size:18
Alignment explanation
Indices: 50217575--50217609 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
50217565 ATCTGCTTCT
*
50217575 GCTGCTGCTGTTGTTGCC
1 GCTGCTGCTGCTGTTGCC
*
50217593 GCTGCTGTTGCTGTTGC
1 GCTGCTGCTGCTGTTGC
50217610 TGTGATTGTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.00, C:0.26, G:0.34, T:0.40
Consensus pattern (18 bp):
GCTGCTGCTGCTGTTGCC
Found at i:50217849 original size:6 final size:6
Alignment explanation
Indices: 50217838--50217872 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
50217828 GAGAAGCATT
* *
50217838 TGTTGC TGTTGC TGTTGC TGTTGT TGTTTC TGTTG
1 TGTTGC TGTTGC TGTTGC TGTTGC TGTTGC TGTTG
50217873 GTGTAAGAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.00, C:0.11, G:0.31, T:0.57
Consensus pattern (6 bp):
TGTTGC
Found at i:50217896 original size:51 final size:54
Alignment explanation
Indices: 50217770--50217896 Score: 129
Period size: 51 Copynumber: 2.3 Consensus size: 54
50217760 GAAGGGAAGC
*
50217770 GAGAAATTGCCTGCTGCTGTTGCTGATGATGTTGGGCTTGTTTCTGAAGTTGTTGTAA
1 GAGAAATTG-CTGCTGCTGTTGCTGATGATGTT-GGCTTGTTTCT--AGTTGGTGTAA
* * *
50217828 GAGAAGCATT--TGTTGCTGTTGCTGTTGCTGTT-G-TTGTTTCT-GTTGGTGTAA
1 GAGAA--ATTGCTGCTGCTGTTGCTGATGATGTTGGCTTGTTTCTAGTTGGTGTAA
50217879 GAGAAATTGCTGCTGCTG
1 GAGAAATTGCTGCTGCTG
50217897 CCGCTGCTGA
Statistics
Matches: 60, Mismatches: 5, Indels: 15
0.75 0.06 0.19
Matches are distributed among these distances:
49 3 0.05
51 21 0.35
54 8 0.13
55 1 0.02
57 19 0.32
58 5 0.08
60 3 0.05
ACGTcount: A:0.16, C:0.12, G:0.31, T:0.41
Consensus pattern (54 bp):
GAGAAATTGCTGCTGCTGTTGCTGATGATGTTGGCTTGTTTCTAGTTGGTGTAA
Found at i:50219418 original size:13 final size:13
Alignment explanation
Indices: 50219400--50219424 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50219390 TATAATACTA
50219400 ATTTTAAAAATAT
1 ATTTTAAAAATAT
50219413 ATTTTAAAAATA
1 ATTTTAAAAATA
50219425 AAGGTAGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATTTTAAAAATAT
Found at i:50224028 original size:44 final size:44
Alignment explanation
Indices: 50223916--50224034 Score: 166
Period size: 44 Copynumber: 2.7 Consensus size: 44
50223906 TAAAAGAGAA
* * *
50223916 TACAATATATCACTACAATTATACACTACACTTTAATTTGATAG
1 TACAATATATCACTACAATTATACCCTACAATTTAATTTAATAG
* *
50223960 TACAATATATCACTGCAGTTATACCCTACAATTTAATTTAATAG
1 TACAATATATCACTACAATTATACCCTACAATTTAATTTAATAG
* * *
50224004 TACAATATATCATTAAAATTATACCTTACAA
1 TACAATATATCACTACAATTATACCCTACAA
50224035 AATATTGAAA
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 65 1.00
ACGTcount: A:0.42, C:0.18, G:0.04, T:0.36
Consensus pattern (44 bp):
TACAATATATCACTACAATTATACCCTACAATTTAATTTAATAG
Found at i:50228035 original size:18 final size:18
Alignment explanation
Indices: 50228002--50228036 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
50227992 TATAACTTTA
**
50228002 AAAGTAAAACTTAAAAAT
1 AAAGTAAAACGAAAAAAT
50228020 AAAGTAAAACGAAAAAA
1 AAAGTAAAACGAAAAAA
50228037 AAGAATGAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.71, C:0.06, G:0.09, T:0.14
Consensus pattern (18 bp):
AAAGTAAAACGAAAAAAT
Found at i:50228123 original size:15 final size:16
Alignment explanation
Indices: 50228101--50228138 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
50228091 CAACATCTAA
50228101 TTTT-AAAATATT-AT
1 TTTTAAAAATATTCAT
*
50228115 TTTTAAAAATTTTCAT
1 TTTTAAAAATATTCAT
50228131 TTTTAAAA
1 TTTTAAAA
50228139 TATGCTACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 4 0.19
15 7 0.33
16 10 0.48
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (16 bp):
TTTTAAAAATATTCAT
Found at i:50228139 original size:15 final size:14
Alignment explanation
Indices: 50228101--50228141 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
50228091 CAACATCTAA
50228101 TTTTAAAATATTAT
1 TTTTAAAATATTAT
*
50228115 TTTTAAAAATTTTCAT
1 TTTT-AAAATATT-AT
50228131 TTTTAAAATAT
1 TTTTAAAATAT
50228142 GCTACATAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 4 0.17
15 13 0.57
16 6 0.26
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.56
Consensus pattern (14 bp):
TTTTAAAATATTAT
Found at i:50229251 original size:18 final size:18
Alignment explanation
Indices: 50229228--50229262 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
50229218 TTAAACAAAA
* *
50229228 AAGAAAGAGAAAGAGAAG
1 AAGAAAAAGAAAAAGAAG
50229246 AAGAAAAAGAAAAAGAA
1 AAGAAAAAGAAAAAGAA
50229263 AGCATGAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (18 bp):
AAGAAAAAGAAAAAGAAG
Found at i:50232738 original size:32 final size:32
Alignment explanation
Indices: 50232702--50232766 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
50232692 AAAGTGTTAA
50232702 AGGGGATCTTAGGTAGCCTAATCACCTATACT
1 AGGGGATCTTAGGTAGCCTAATCACCTATACT
50232734 AGGGGATCTTAGGTAGCCTAATCACCTATACT
1 AGGGGATCTTAGGTAGCCTAATCACCTATACT
50232766 A
1 A
50232767 AGTTCCATGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (32 bp):
AGGGGATCTTAGGTAGCCTAATCACCTATACT
Found at i:50240004 original size:3 final size:3
Alignment explanation
Indices: 50239996--50240028 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
50239986 AACGTGCATG
50239996 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
50240029 GCAAATAACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:50241013 original size:15 final size:15
Alignment explanation
Indices: 50240984--50241024 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
50240974 TTCGTTTTTA
50240984 AAAAAAATA-ATAAT
1 AAAAAAATAGATAAT
50240998 AATAAAAATAGA-AAT
1 AA-AAAAATAGATAAT
50241013 AAAAGAAATAGA
1 AAAA-AAATAGA
50241025 GAGATCGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 4 0.17
15 19 0.79
16 1 0.04
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (15 bp):
AAAAAAATAGATAAT
Found at i:50245899 original size:50 final size:50
Alignment explanation
Indices: 50245785--50246122 Score: 335
Period size: 50 Copynumber: 6.8 Consensus size: 50
50245775 TATGGTCTTG
* * * * *
50245785 CACATAATCACAAATCAATGCCATAGCCCAACTAT-GTCTTACATGGAAT
1 CACATAATCACATACCGATGTCATAGCCCAGCTATGGTCTTACATGGAAT
* *
50245834 CACATAATCACATACCGATGTCGTAGCCTAGCTATGGTCTTACACT-GAAT
1 CACATAATCACATACCGATGTCATAGCCCAGCTATGGTCTTACA-TGGAAT
* * * * **
50245884 CACGTAACCATATACCGATGCCATAGCCCAGCTATGGTCTTACACAGAAT
1 CACATAATCACATACCGATGTCATAGCCCAGCTATGGTCTTACATGGAAT
* * *
50245934 CACATAATCACATACCGATGCCATAACCCAGCTATGATCTTACATGGAAT
1 CACATAATCACATACCGATGTCATAGCCCAGCTATGGTCTTACATGGAAT
* * * * * * * *
50245984 TACGTAACCATATAACGAT-TCCATAGCCCATCTATAGTCTTACATAGAAT
1 CACATAATCACATACCGATGT-CATAGCCCAGCTATGGTCTTACATGGAAT
* *
50246034 CACATAATCACATACCGATGTCATAGCTCAGCTATGGTCTTACA-CGAAT
1 CACATAATCACATACCGATGTCATAGCCCAGCTATGGTCTTACATGGAAT
* * * * *
50246083 CACACT-ATCACATATCGGTGCCATATCCCAACTATGGTCT
1 CACA-TAATCACATACCGATGTCATAGCCCAGCTATGGTCT
50246123 CAAAGGAAAT
Statistics
Matches: 236, Mismatches: 47, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
49 64 0.27
50 170 0.72
51 2 0.01
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (50 bp):
CACATAATCACATACCGATGTCATAGCCCAGCTATGGTCTTACATGGAAT
Found at i:50245975 original size:100 final size:99
Alignment explanation
Indices: 50245802--50246085 Score: 410
Period size: 100 Copynumber: 2.9 Consensus size: 99
50245792 TCACAAATCA
* * *
50245802 ATGCCATAGCCCAACTATGTCTTACATGGAATCACATAATCACATACCGATGTCGTAGCCTAGCT
1 ATGCCATAGCCCAACTATGTCTTACATAGAATCACATAATCACATACCGATGTCATAGCCCAGCT
*
50245867 ATGGTCTTACACTGAATCACGTAACCATATACCG
66 ATGGTCTTACACTGAATCACGTAACCATATAACG
* * * *
50245901 ATGCCATAGCCCAGCTATGGTCTTACACAGAATCACATAATCACATACCGATGCCATAACCCAGC
1 ATGCCATAGCCCAACTAT-GTCTTACATAGAATCACATAATCACATACCGATGTCATAGCCCAGC
* *
50245966 TATGATCTTACA-TGGAATTACGTAACCATATAACG
65 TATGGTCTTACACT-GAATCACGTAACCATATAACG
* * *
50246001 ATTCCATAGCCCATCTATAGTCTTACATAGAATCACATAATCACATACCGATGTCATAGCTCAGC
1 ATGCCATAGCCCAACTAT-GTCTTACATAGAATCACATAATCACATACCGATGTCATAGCCCAGC
50246066 TATGGTCTTACAC-GAATCAC
65 TATGGTCTTACACTGAATCAC
50246086 ACTATCACAT
Statistics
Matches: 163, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
99 24 0.15
100 139 0.85
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.26
Consensus pattern (99 bp):
ATGCCATAGCCCAACTATGTCTTACATAGAATCACATAATCACATACCGATGTCATAGCCCAGCT
ATGGTCTTACACTGAATCACGTAACCATATAACG
Found at i:50246059 original size:150 final size:148
Alignment explanation
Indices: 50245785--50246118 Score: 413
Period size: 150 Copynumber: 2.2 Consensus size: 148
50245775 TATGGTCTTG
* * * * *
50245785 CACATAATCACAAATCAATGCCATAGCCCAACTATGTCTTACATGGAATCACATAATCACATACC
1 CACATAATCACATATCGATGCCATAACCCAACTATGTCTTACATGGAATCACATAACCACATAAC
* * * * *
50245850 GATGTCGTAGCCTAGCTATGGTCTTACACTGAATCACGTAACCATATACCGATGCCATAGCCCAG
66 GATGTCATAGCCCAGCTATAGTCTTACACTGAATCACATAACCACATACCGATGCCATAGCCCAG
50245915 CTATGGTCTTACACAGAAT
131 CTATGGTCTTACAC-GAAT
* * * * *
50245934 CACATAATCACATACCGATGCCATAACCCAGCTATGATCTTACATGGAATTACGTAACCATATAA
1 CACATAATCACATATCGATGCCATAACCCAACTATG-TCTTACATGGAATCACATAACCACATAA
* * * *
50245999 CGAT-TCCATAGCCCATCTATAGTCTTACA-TAGAATCACATAATCACATACCGATGTCATAGCT
65 CGATGT-CATAGCCCAGCTATAGTCTTACACT-GAATCACATAACCACATACCGATGCCATAGCC
50246062 CAGCTATGGTCTTACACGAAT
128 CAGCTATGGTCTTACACGAAT
* *
50246083 CACACT-ATCACATATCGGTGCCATATCCCAACTATG
1 CACA-TAATCACATATCGATGCCATAACCCAACTATG
50246119 GTCTCAAAGG
Statistics
Matches: 158, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
149 67 0.42
150 91 0.58
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.26
Consensus pattern (148 bp):
CACATAATCACATATCGATGCCATAACCCAACTATGTCTTACATGGAATCACATAACCACATAAC
GATGTCATAGCCCAGCTATAGTCTTACACTGAATCACATAACCACATACCGATGCCATAGCCCAG
CTATGGTCTTACACGAAT
Found at i:50251799 original size:43 final size:42
Alignment explanation
Indices: 50251727--50251883 Score: 174
Period size: 43 Copynumber: 3.7 Consensus size: 42
50251717 TATATGTTAT
* * * *
50251727 CGTGTAAGACCACGTCTAGGACGTCGGCATCGACTTGTGTTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGA-TTGTGATTA
*
50251770 CGTGTAAGACCATGTCTGGGACATTGGCATCGTATT-TGATT-
1 CGTGTAAGACCACGTCTGGGACATTGGCATCG-ATTGTGATTA
** *
50251811 CGTGTAAGACCGTGTCTGGGACAGTGGCATCGATATGTGATTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGAT-TGTGATTA
* * *
50251854 CATGTAAGACCACGTTTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACATTGGCAT
50251884 TGTACGAGTC
Statistics
Matches: 97, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
40 2 0.02
41 31 0.32
42 9 0.09
43 54 0.56
44 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.29
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGATTGTGATTA
Found at i:50251874 original size:84 final size:84
Alignment explanation
Indices: 50251726--50251883 Score: 212
Period size: 84 Copynumber: 1.9 Consensus size: 84
50251716 ATATATGTTA
* * *
50251726 TCGTGTAAGACCACGTCTAGGACGTCGGCATCGACTTGTGTTTACGTGTAAGACCATGTCTGGGA
1 TCGTGTAAGACCACGTCTAGGACGTCGGCATCGACTTGTGATTACATGTAAGACCACGTCTGGGA
50251791 CATTGGCATCGTATTTGAT
66 CATTGGCATCGTATTTGAT
** * *
50251810 TCGTGTAAGACCGTGTCTGGGACAGT-GGCATCGA-TATGTGATTACATGTAAGACCACGTTTGG
1 TCGTGTAAGACCACGTCTAGGAC-GTCGGCATCGACT-TGTGATTACATGTAAGACCACGTCTGG
*
50251873 GACGTTGGCAT
64 GACATTGGCAT
50251884 TGTACGAGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
83 1 0.02
84 61 0.95
85 2 0.03
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (84 bp):
TCGTGTAAGACCACGTCTAGGACGTCGGCATCGACTTGTGATTACATGTAAGACCACGTCTGGGA
CATTGGCATCGTATTTGAT
Found at i:50252073 original size:16 final size:17
Alignment explanation
Indices: 50252044--50252075 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
50252034 TGAATTGATG
50252044 ATATGAAGTTATGTGAA
1 ATATGAAGTTATGTGAA
50252061 ATATGAA-TTATGTGA
1 ATATGAAGTTATGTGA
50252076 TTGTATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.38
Consensus pattern (17 bp):
ATATGAAGTTATGTGAA
Found at i:50262287 original size:7 final size:7
Alignment explanation
Indices: 50262275--50262299 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
50262265 AGTCGATTGA
50262275 TATTTAG
1 TATTTAG
50262282 TATTTAG
1 TATTTAG
50262289 TATTTAG
1 TATTTAG
50262296 TATT
1 TATT
50262300 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:50263423 original size:25 final size:25
Alignment explanation
Indices: 50263389--50263511 Score: 141
Period size: 25 Copynumber: 5.1 Consensus size: 25
50263379 GAGTATTTTA
50263389 AAGTTTATTTGATGTAATAAAATAG
1 AAGTTTATTTGATGTAATAAAATAG
50263414 AAGTTTATTTGATGTAATAAAAATAG
1 AAGTTTATTTGATGTAAT-AAAATAG
* * ** *
50263440 AAATTTTTTTGA-GT--T-ATTTTG
1 AAGTTTATTTGATGTAATAAAATAG
50263461 -A-TATTATTTGATGTAATAAAATAG
1 AAGT-TTATTTGATGTAATAAAATAG
50263485 AAGTTTATTTGATGTAATAAAATAG
1 AAGTTTATTTGATGTAATAAAATAG
50263510 AA
1 AA
50263512 ATTTTTGAAT
Statistics
Matches: 81, Mismatches: 9, Indels: 16
0.76 0.08 0.15
Matches are distributed among these distances:
19 1 0.01
20 8 0.10
21 5 0.06
23 2 0.02
24 3 0.04
25 44 0.54
26 18 0.22
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.43
Consensus pattern (25 bp):
AAGTTTATTTGATGTAATAAAATAG
Found at i:50263586 original size:23 final size:24
Alignment explanation
Indices: 50263560--50263773 Score: 116
Period size: 28 Copynumber: 8.2 Consensus size: 24
50263550 ATTCTACTAA
50263560 CCTAATTAAATTGAAAAGAAAACC
1 CCTAATTAAATTGAAAAGAAAACC
50263584 CTAATCTAATTAAATTGAAAAGAAAA-C
1 C----CTAATTAAATTGAAAAGAAAACC
*
50263611 CCTAATCT-AATT-AAATTGAAAACTC
1 CCTAAT-TAAATTGAAA-AGAAAAC-C
* ***
50263636 TAACCTAGTTAAATTGAAAACTCTAA--
1 ---CCTAATTAAATTGAAAA-GAAAACC
50263662 CCTAATTAAATTGAAAAGAAAACTC
1 CCTAATTAAATTGAAAAGAAAAC-C
50263687 TAACCTAATTAAATTGAAAAGAAAACTC
1 ---CCTAATTAAATTGAAAAGAAAAC-C
50263715 TAACCTAATT-AATTGAAAAGAAAACCC
1 ---CCTAATTAAATTGAAAAGAAAA-CC
* *
50263742 TAACCTAATTAAATTGAAAAAAAAAAC
1 ---CCTAATTAAATTGAAAAGAAAACC
50263769 CCTAA
1 CCTAA
50263774 CCTAATTAAA
Statistics
Matches: 156, Mismatches: 12, Indels: 44
0.74 0.06 0.21
Matches are distributed among these distances:
22 5 0.03
23 30 0.19
24 7 0.04
25 1 0.01
27 29 0.19
28 79 0.51
29 5 0.03
ACGTcount: A:0.52, C:0.16, G:0.07, T:0.25
Consensus pattern (24 bp):
CCTAATTAAATTGAAAAGAAAACC
Found at i:50263587 original size:28 final size:24
Alignment explanation
Indices: 50263556--50264207 Score: 627
Period size: 23 Copynumber: 26.2 Consensus size: 24
50263546 GAGAATTCTA
50263556 CTAACCTAATTAAATTGAAAAGAAAACC
1 CTAACCTAATTAAATT----AGAAAACC
*
50263584 CTAATCTAATTAAATTGAAAAGAAAACC
1 CTAACCTAATTAAATT----AGAAAACC
* *
50263612 CTAATCTAATTAAATT-GAAAACT
1 CTAACCTAATTAAATTAGAAAACC
* *
50263635 CTAACCTAGTTAAATT-GAAAACT
1 CTAACCTAATTAAATTAGAAAACC
*
50263658 CTAACCTAATTAAATTGAAAAGAAAACT
1 CTAACCTAATTAAATT----AGAAAACC
*
50263686 CTAACCTAATTAAATTGAAAAGAAAACT
1 CTAACCTAATTAAATT----AGAAAACC
50263714 CTAACCTAATT-AATTGAAAAGAAAACC
1 CTAACCTAATTAAATT----AGAAAACC
*
50263741 CTAACCTAATTAAATTGAAAAAAAAAACC
1 CTAACCTAATTAAATT-----AGAAAACC
50263770 CTAACCTAATTAAATTA-AAAACC
1 CTAACCTAATTAAATTAGAAAACC
*
50263793 CTAACCTAATTAAATTGAAAAAAAACC
1 CTAACCTAATTAAATT---AGAAAACC
*
50263820 CTAACCTAATTAAATT-TAAAACC
1 CTAACCTAATTAAATTAGAAAACC
50263843 CTAACCTAATTAAATTA-AAAACC
1 CTAACCTAATTAAATTAGAAAACC
50263866 CTAACCTAATTAAATT-GAAAACC
1 CTAACCTAATTAAATTAGAAAACC
*
50263889 CTAACCTAGTTAAATT-GAAAACC
1 CTAACCTAATTAAATTAGAAAACC
50263912 CTAACCTAATTAAATTA-AAAACC
1 CTAACCTAATTAAATTAGAAAACC
50263935 CTAACCTAATTAAATTGAAAAGAAAACC
1 CTAACCTAATTAAATT----AGAAAACC
50263963 CTAACCTAATTAAATTGAAAAGAAAACC
1 CTAACCTAATTAAATT----AGAAAACC
*
50263991 TTAACCTAATTAAATT-GAAAACC
1 CTAACCTAATTAAATTAGAAAACC
* *
50264014 CTAACCTAGTTAAATT-GAAAACT
1 CTAACCTAATTAAATTAGAAAACC
*
50264037 CTAACCTAATTAAATTGGGAAAAAACC
1 CTAACCTAATTAAATT---AGAAAACC
50264064 CTAACCTAATTAAATT-GAAAACC
1 CTAACCTAATTAAATTAGAAAACC
*
50264087 CTAACCTAATTAAATTA-AAAACT
1 CTAACCTAATTAAATTAGAAAACC
*
50264110 CTAACCTAATTAAA-AAGAAAACC
1 CTAACCTAATTAAATTAGAAAACC
****
50264133 CTAACCTAATTAAA-CCCTAAACC
1 CTAACCTAATTAAATTAGAAAACC
50264156 CTAACCTAATTAAATT-GAAAACC
1 CTAACCTAATTAAATTAGAAAACC
* *
50264179 CTAACTTAATTAAATT-GAAAACT
1 CTAACCTAATTAAATTAGAAAACC
50264202 CTAACC
1 CTAACC
50264208 CTTAACATTC
Statistics
Matches: 566, Mismatches: 32, Indels: 57
0.86 0.05 0.09
Matches are distributed among these distances:
22 1 0.00
23 325 0.57
24 1 0.00
26 1 0.00
27 70 0.12
28 142 0.25
29 26 0.05
ACGTcount: A:0.50, C:0.19, G:0.05, T:0.25
Consensus pattern (24 bp):
CTAACCTAATTAAATTAGAAAACC
Found at i:50267411 original size:125 final size:125
Alignment explanation
Indices: 50267249--50267613 Score: 617
Period size: 124 Copynumber: 2.9 Consensus size: 125
50267239 CCCAAACATG
*
50267249 CTACTGTAGCAAAAGCGCGTCCACAAGGGCGCGATTTTCACAAATTCTTCTCAAATAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTTCACAAATTCTTCTCAAATAGCATCCTG
50267314 CTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCATCCATGAC
66 CTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCATCCATGAC
* *
50267374 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCAATTTT-ACAAATTATTCTCAAATAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTTCACAAATTCTTCTCAAATAGCATCCTG
*
50267438 CTAGAAGCGATTTTATATTATTTGCTCAGAAACGTCAAAAAAAATTATTTCATCCATGAC
66 CTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCATCCATGAC
* *
50267498 CTACTGTAGCAAAAGCGAGTCCACGAGGGCGCGA-TTTCACAAATTCTTCTCAAATAGCATCTTG
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTTCACAAATTCTTCTCAAATAGCATCCTG
* * **
50267562 CTAGAAGCGGTTTTATACTATTTGATCAGAAACGTCAACTCAAAATTATTTC
66 CTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAA-AAAAAATTATTTC
50267614 TTGCCGAACC
Statistics
Matches: 225, Mismatches: 13, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
123 3 0.01
124 175 0.78
125 47 0.21
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTTCACAAATTCTTCTCAAATAGCATCCTG
CTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCATCCATGAC
Found at i:50277714 original size:58 final size:59
Alignment explanation
Indices: 50277642--50277753 Score: 181
Period size: 59 Copynumber: 1.9 Consensus size: 59
50277632 AACATAAATA
*
50277642 CCAACTATAACTTTCAATAGAGAAAAT-ATAAAGCATGCATATAAGCAAAAACCAAAAG
1 CCAACTATAACTTTCAATAGAGAAAATAAAAAAGCATGCATATAAGCAAAAACCAAAAG
* * *
50277700 CCAACTATAGCTTTCAGTAGGGAAAATAAAAAAGCATGCATATAAGCAAAAACC
1 CCAACTATAACTTTCAATAGAGAAAATAAAAAAGCATGCATATAAGCAAAAACC
50277754 CTAAACCAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
58 24 0.49
59 25 0.51
ACGTcount: A:0.51, C:0.18, G:0.12, T:0.19
Consensus pattern (59 bp):
CCAACTATAACTTTCAATAGAGAAAATAAAAAAGCATGCATATAAGCAAAAACCAAAAG
Found at i:50282182 original size:16 final size:17
Alignment explanation
Indices: 50282161--50282214 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 17
50282151 AAAAATTATC
*
50282161 TTTTCTA-TCTTTCCAT
1 TTTTCTACTCTTTCCAA
*
50282177 TTTTCTACCCTTT-CAA
1 TTTTCTACTCTTTCCAA
*
50282193 TTTTC-ATTCTTTCCAA
1 TTTTCTACTCTTTCCAA
50282209 TTTTCT
1 TTTTCT
50282215 TTCCACTCTA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
15 5 0.16
16 22 0.71
17 4 0.13
ACGTcount: A:0.15, C:0.26, G:0.00, T:0.59
Consensus pattern (17 bp):
TTTTCTACTCTTTCCAA
Found at i:50304272 original size:73 final size:73
Alignment explanation
Indices: 50304085--50304794 Score: 720
Period size: 73 Copynumber: 9.4 Consensus size: 73
50304075 CTTTTCAAGG
* * * * * * *
50304085 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGATACTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
50304150 GTTTTTC-
66 GTTTGTCA
*
50304157 AAAATCAACTCATATT-CTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
50304221 GTTTGTCA
66 GTTTGTCA
* *
50304229 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATCTC-ATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
50304293 GTTTGTCA
66 GTTTGTCA
* **
50304301 AAAATCAA-TCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTCTTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATT
* *
50304364 TCTGTTCGTAAAAA
63 TCTGTTTGT---CA
* * *
50304378 AAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTAAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
50304443 GTTTTTCA
66 GTTTGTCA
* *
50304451 AAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAA-TTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
50304515 GTTTGTAA
66 GTTTGTCA
* * **
50304523 AAAATTAACTCATATTGCAAGAGGTGAGTTGAGCCTC-GGCTCACATGCTATGCTGAGGTCTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACA--C---GCTGAGGTAATTT
*
50304587 CCATTTCTGTTCTTATTTCTGTTCGTAA
58 CAATTTCTG-------TT-TG-TC---A
* * *
50304615 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTCAAGACACGCTTGATGT--TTTAAAT
1 AAA---ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC-TGAGGTAATTTCAAT
* *
50304677 TTTTGTTTTTCAA
62 TTCTGTTTGTC-A
* * * *
50304690 AAAATCAACTCATATTGCTAGAGATTAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
50304755 GTTTGTCA
66 GTTTGTCA
* *
50304763 AGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGA
50304795 ACTTTTAATT
Statistics
Matches: 536, Mismatches: 62, Indels: 79
0.79 0.09 0.12
Matches are distributed among these distances:
70 1 0.00
71 76 0.14
72 130 0.24
73 146 0.27
74 29 0.05
75 5 0.01
76 27 0.05
77 11 0.02
78 28 0.05
79 17 0.03
80 5 0.01
86 9 0.02
87 4 0.01
88 7 0.01
89 1 0.00
90 1 0.00
92 7 0.01
94 3 0.01
95 29 0.05
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (73 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTGTCA
Found at i:50304421 original size:149 final size:144
Alignment explanation
Indices: 50304085--50304994 Score: 741
Period size: 144 Copynumber: 6.2 Consensus size: 144
50304075 CTTTTCAAGG
* * * *
50304085 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGATACTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTA-TTTTAATTTCT
*
50304150 GTTTTTC-AAAATCAACTCATATT-CTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
65 GTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTAATTT
*
50304213 CAATTTCTGTTTGTCA
129 CAATTTCTGTTTGTAA
* * *
50304229 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATCTCATTTCTG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTAATTTCTG
* * **
50304294 TTTGTCAAAAATCAA-TCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTT
66 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG---ACACGCTGAGGTAATT
*
50304358 TCAATTTCTGTTCGTAAAAA
128 TCAATTTCTGTTTGT---AA
* *
50304378 AAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTAAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTT-AATTTCT
*
50304443 GTTTTTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTT
65 GTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTAATTT
50304508 CAA-TTCTGTTTGTAA
129 CAATTTCTGTTTGTAA
* * * *
50304523 AAAATTAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCACATG-CTATGCTGAGGTCTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAG---C--CTCA-A-GAC-ACGCTGAGGTATTTT
*
50304587 CCATTTCTGTTCTTATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-
58 -AATTTCTG-------TT-T-TTC------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* * * * *
50304651 CTCAAGACACGCTTGATGT--TTTAAATTTTTGTTTTTCAA
107 CTC-GGACACGC-TGAGGTAATTTCAATTTCTGTTTGT-AA
* * * * * *
50304690 AAAATCAACTCATATTGCTAGAGATTAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGT-ATTTTAATTTCT
* * * **
50304755 GTTTGTCAAGAATCAACTCATATTGCGAGAGGT--G--G-G--T-TGA-A--CT--TTTAATTT-
65 GTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTAATTTC
**
50304806 --TCTTCT-TTTTCAA
130 AAT-TTCTGTTTGTAA
* * * *
50304819 A---TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTCTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATT-TTAATTTCT
* * *
50304881 GTTGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTT
65 GTT-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTAATT
* * *
50304946 TTAGTTTATGTTT-T--
128 TCAATTTCTGTTTGTAA
** *
50304960 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
50304995 TTTAATTTTT
Statistics
Matches: 623, Mismatches: 78, Indels: 131
0.75 0.09 0.16
Matches are distributed among these distances:
125 3 0.00
126 52 0.08
127 27 0.04
129 4 0.01
130 5 0.01
131 6 0.01
132 1 0.00
133 4 0.01
134 2 0.00
136 2 0.00
137 3 0.00
139 3 0.00
140 1 0.00
141 6 0.01
143 54 0.09
144 81 0.13
145 57 0.09
146 27 0.04
148 10 0.02
149 71 0.11
150 25 0.04
151 30 0.05
152 24 0.04
153 2 0.00
159 2 0.00
160 17 0.03
161 7 0.01
162 4 0.01
164 1 0.00
165 5 0.01
166 18 0.03
167 69 0.11
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.34
Consensus pattern (144 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTAATTTCTG
TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTAATTTCA
ATTTCTGTTTGTAA
Found at i:50304478 original size:222 final size:228
Alignment explanation
Indices: 50304157--50304794 Score: 873
Period size: 222 Copynumber: 2.8 Consensus size: 228
50304147 TTTGTTTTTC
* * *
50304157 AAAATCAACTCATATTCT-AGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTAAATTTCT
* * *
50304221 GTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATCT
66 GTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
50304286 CATTTCTGTTTGTCAAAAATCAA-TCATATTGCGAGAGGTGAGTTGAGCCTCGGCT-CA-C-ATG
131 CATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTACAGCTATG
50304347 CTGAGGTCTTTT-CA-ATTTCTGTTCGTAAAAA
196 CTGAGGTCTTTTCCATATTTCTGTTCGTAAAAA
50304378 AAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTAAATTTCT
1 AAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTAAATTTCT
* *
50304443 GTTTTTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTT
66 GTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
* * * *
50304508 CAATTCTGTTTGTAAAAAATTAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCACATGCTA
131 CATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCT-ACA-GCTA
50304573 TGCTGAGGTCTTTTCCATTTCTGTTCTTATTTCTGTTCGTAAAAA
194 TGCTGAGGTCTTTTCCA----------TATTTCTGTTCGTAAAAA
* * * *
50304618 AAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTCAAGACACGCTTGA--TGTTTTAAATTTT
1 AAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGC-TGAGGTATTTTAAATTTC
* * * *
50304680 TGTTTTTCAAAAAATCAACTCATATTGCTAGAGATTAGTTGAGCCTCAGGACACGATGAGGTAAT
65 TGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT
* *
50304745 TTCAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
129 TTC-ATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
50304795 ACTTTTAATT
Statistics
Matches: 367, Mismatches: 28, Indels: 25
0.87 0.07 0.06
Matches are distributed among these distances:
221 17 0.05
222 124 0.34
223 31 0.08
225 2 0.01
227 1 0.00
228 15 0.04
229 2 0.01
238 19 0.05
239 64 0.17
240 92 0.25
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.32
Consensus pattern (228 bp):
AAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTAAATTTCT
GTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
CATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTACAGCTATG
CTGAGGTCTTTTCCATATTTCTGTTCGTAAAAA
Found at i:50304788 original size:240 final size:239
Alignment explanation
Indices: 50304361--50304794 Score: 683
Period size: 240 Copynumber: 1.8 Consensus size: 239
50304351 GGTCTTTTCA
* *
50304361 ATTTCTGTTCGTAAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTG
1 ATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTG
* *
50304426 AGGTATTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGG
66 A-GTATTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAAAGATGAGTTGAGCCTCAGG
* *
50304491 ACACGCTGAGGTAATTTCAATTCTGTTTGTAAAAAATTAACTCATATTGCAAGAGGTGAGTTGAG
130 ACACGATGAGGTAATTTCAATTCTGTTTGTAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAG
50304556 CCTCGGCTCACATGCTATGCTGAGGTCTTTTCCATTTCTGTTCTT
195 CCTCGGCTCACATGCTATGCTGAGGTCTTTTCCATTTCTGTTCTT
50304601 ATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTCAAGACACGCTT
1 ATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGC-T
* * * * *
50304665 GA-TGTTTTAAATTTTTGTTTTTCAAAAAATCAACTCATATTGCTAGAGATTAGTTGAGCCTCAG
65 GAGTATTTTAAATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAAAGATGAGTTGAGCCTCAG
* * * *
50304729 GACACGATGAGGTAATTTCAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTG
129 GACACGATGAGGTAATTTCAA-TTCTGTTTGTAAAAAATCAACTCATATTGCAAGAGGTGAGTTG
50304794 A
193 A
50304795 ACTTTTAATT
Statistics
Matches: 176, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
238 19 0.11
239 66 0.38
240 91 0.52
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (239 bp):
ATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTG
AGTATTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAAAGATGAGTTGAGCCTCAGGA
CACGATGAGGTAATTTCAATTCTGTTTGTAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGC
CTCGGCTCACATGCTATGCTGAGGTCTTTTCCATTTCTGTTCTT
Found at i:50304938 original size:74 final size:69
Alignment explanation
Indices: 50304812--50304994 Score: 222
Period size: 74 Copynumber: 2.6 Consensus size: 69
50304802 ATTTTCTTCT
* *
50304812 TTTTCAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTCTTAAT
1 TTTT-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTCTTAAT
*
50304877 TTTTG
65 TTATG
* * *
50304882 TTGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTT
1 -T-TTT---AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTCT
*
50304947 TAGTTTATG
61 TAATTTATG
** *
50304956 TTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 TTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
50304995 TTTAATTTTT
Statistics
Matches: 97, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
69 31 0.32
71 1 0.01
72 6 0.06
73 1 0.01
74 58 0.60
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (69 bp):
TTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTCTTAATT
TATG
Found at i:50305048 original size:196 final size:198
Alignment explanation
Indices: 50304618--50305370 Score: 778
Period size: 196 Copynumber: 3.7 Consensus size: 198
50304608 TTCGTAAAAA
* * * *
50304618 AAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTCAAGACACGCTTGA--TGTTTTAAATTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC-TGAGGTATTTTCAATTTT
* * *
50304680 TGTT-TTTCAAAAAATCAACTCATATTGCTAG-AGATTAGTTGAGCCTCAGGACACGATGAGGTA
65 TGTTGTTTC-AAAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAGGACACGCTGAGGTA
* * *
50304743 ATTTCAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAA-CTTTTAATTTT
128 TTTTTAATTTATGTTT-T-AAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAA-TTT
50304807 CTTCTTTTTC
190 CTT-TTTTTC
*
50304817 -AAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTCTT-AATTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATT-TTCAATTTT
* *
50304880 TGTTGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATT
65 TGTTGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATT
* ** *
50304945 TTTAGTTTATGTTTT-A-AATTGACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTAATTT-TTG
130 TTTAATTTATGTTTTAAGAATCAACTCATATTGCGAGAGGTGGGTTGAA-CCTTTTAATTTCTT-
50305006 TTTTTC
193 TTTTTC
* * * * *
50305012 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCATGCTGAAGTATTTTCAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTT
* * ** * * *
50305077 TTTGTTT-TAATTTCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTT
66 GTTGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGG-----
* *
50305141 TCAATTTCTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACC
126 T--A----T-TTTT-AATTTATGTT-TT-AAGAATCAACTCATATTGCGAGAGGTGGGTTGAACC
*
50305206 TTTTAATTTCTATTTTTTT
181 TTTTAATTTCT-TTTTTTC
*
50305225 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAATT
*** *
50305289 TTTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
63 TTTGTT-GT-TTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGG
**
50305354 TGGTTTTAATTTATGTT
126 TATTTTTAATTTATGTT
50305371 CATAAAAAAT
Statistics
Matches: 464, Mismatches: 54, Indels: 66
0.79 0.09 0.11
Matches are distributed among these distances:
195 57 0.12
196 89 0.19
197 8 0.02
198 34 0.07
199 11 0.02
200 72 0.16
201 8 0.02
202 1 0.00
205 9 0.02
206 5 0.01
207 4 0.01
208 8 0.02
209 2 0.00
211 1 0.00
212 37 0.08
213 46 0.10
214 1 0.00
215 22 0.05
216 2 0.00
218 47 0.10
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.37
Consensus pattern (198 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTTT
GTTGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTT
TTAATTTATGTTTTAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTTTTT
TTC
Found at i:50305350 original size:218 final size:212
Alignment explanation
Indices: 50304966--50305354 Score: 548
Period size: 218 Copynumber: 1.8 Consensus size: 212
50304956 TTTTAAATTG
* *
50304966 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCT
1 ACTCATATTGCGAGAAGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCG
** * *** **
50305031 AGAGGTGAGTTGAGCCTCGGGGCATGCTGAAGTATTTTCAATTTTTTTTGTTTTAATTTCAACTC
66 AGAGGTGAGTTGAGCCTCGGCACATGCTGAAGTATTTTCAATTTTTTTCGTAAAAAAATCAACTC
* *
50305096 ATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAATTT
131 ATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTCAATTT
50305161 ACGTTGTTCAAGAATCA
196 ACGTTGTTCAAGAATCA
* * *
50305178 ACTCATATTGCGAGAAGTGGGTTGAA-CCTTTTAATTTCTAT-TTTTTTAAAATCAGCTCATATT
1 ACTCATATTGCGAGAAGTGAGTT-AAGCCTTTTAATTT-T-TGTTTTTCAAAATCAACTCATATT
*
50305241 GCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTCAATTTTTGTTCGTAAAAAAAA
63 GCGAGAGGTGAGTTGAGCCTCGG--CACATGCTGAAGTATTTTCAATTTTT-TTCGT--AAAAAA
50305306 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
123 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
50305355 GGTTTTAATT
Statistics
Matches: 153, Mismatches: 16, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
212 32 0.21
213 45 0.29
214 1 0.01
215 23 0.15
216 4 0.03
218 48 0.31
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (212 bp):
ACTCATATTGCGAGAAGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCG
AGAGGTGAGTTGAGCCTCGGCACATGCTGAAGTATTTTCAATTTTTTTCGTAAAAAAATCAACTC
ATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTCAATTT
ACGTTGTTCAAGAATCA
Found at i:50305407 original size:73 final size:74
Alignment explanation
Indices: 50305225--50305605 Score: 297
Period size: 73 Copynumber: 4.9 Consensus size: 74
50305215 CTATTTTTTT
*
50305225 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTCAATTT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGG-T-ACACGCTGAGGTATTTTCAATTT
*
50305290 TTGTTCGTAAAAA
64 ATGTTC--AAAAA
* *
50305303 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTGGTTTT-AATTT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTACACGCTGAGGT-ATTTTCAATTT
*
50305366 ATGTTC-ATAA
64 ATGTTCAAAAA
* ** *
50305376 AAAATTAGCTCATATTGTAAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAATTT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGG-T-ACACGCTGAGGTATTTTCAATTT
* ***
50305441 CTGGTTTTCAATTTCTGTTTTT
64 AT-G--TTCAA--------AAA
* * *
50305463 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTCAATTTC
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTACACGCTGAGGTATTTTCAATTTA
****
50305527 TGTT-TGTCA
65 TGTTCAAAAA
* * * *
50305536 AAAATCAACTCATATTGCGAGAGATGAGTTGAG-CTCGGCTCACATGCTGAGGTCTTTTCAATTT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGG-T-ACACGCTGAGGTATTTTCAATTT
*
50305600 CTGTTC
64 ATGTTC
50305606 TTCAATTTCT
Statistics
Matches: 252, Mismatches: 28, Indels: 49
0.77 0.09 0.15
Matches are distributed among these distances:
71 2 0.01
72 5 0.02
73 68 0.27
74 29 0.12
75 18 0.07
76 22 0.09
77 4 0.02
78 39 0.15
79 3 0.01
82 2 0.01
84 1 0.00
85 24 0.10
87 33 0.13
88 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.34
Consensus pattern (74 bp):
AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGTACACGCTGAGGTATTTTCAATTTAT
GTTCAAAAA
Found at i:50305462 original size:14 final size:14
Alignment explanation
Indices: 50305431--50305461 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
50305421 CGCTGAGGTA
50305431 TTTTCAATTTCTGG
1 TTTTCAATTTCTGG
50305445 TTTTCAATTTCT-G
1 TTTTCAATTTCTGG
50305458 TTTT
1 TTTT
50305462 TAAAATCAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.13, C:0.13, G:0.10, T:0.65
Consensus pattern (14 bp):
TTTTCAATTTCTGG
Found at i:50305611 original size:14 final size:14
Alignment explanation
Indices: 50305592--50305619 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
50305582 CTGAGGTCTT
50305592 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
50305606 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
50305620 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:50305702 original size:14 final size:14
Alignment explanation
Indices: 50305683--50305710 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
50305673 CTGAGGTCTT
50305683 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
50305697 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
50305711 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:50305717 original size:90 final size:91
Alignment explanation
Indices: 50305518--50305792 Score: 418
Period size: 91 Copynumber: 3.1 Consensus size: 91
50305508 CTGAGGTAAT
* * *
50305518 TTCAATTTCTGTTTGT--CAAAAATCAACTCATATTGCGAGAGATGAGTTGAG-CTCGGCTCACA
1 TTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACA
50305580 TGCTGAGGTCTTTTCAATTTCTGTTC
66 TGCTGAGGTCTTTTCAATTTCTGTTC
50305606 TTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACA
1 TTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACA
50305671 TGCTGAGGTCTTTTCAATTTCTGTTC
66 TGCTGAGGTCTTTTCAATTTCTGTTC
*
50305697 TTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAT-A
1 TTCAATTTCTGTTCGT-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCA
* * *
50305761 C--GCTGAGGTATTTTTAAATTTCTGTTT
64 CATGCTGAGGT-CTTTTCAATTTCTGTTC
50305788 TTCAA
1 TTCAA
50305793 AAATCGACTC
Statistics
Matches: 174, Mismatches: 7, Indels: 9
0.92 0.04 0.05
Matches are distributed among these distances:
88 15 0.09
90 41 0.24
91 72 0.41
92 43 0.25
93 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (91 bp):
TTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACA
TGCTGAGGTCTTTTCAATTTCTGTTC
Found at i:50305893 original size:73 final size:73
Alignment explanation
Indices: 50305717--50305934 Score: 319
Period size: 73 Copynumber: 2.9 Consensus size: 73
50305707 GTTCGTAAAA
* * *
50305717 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGATACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA-TTTTCAATTT
*
50305782 CTGTTTTTC
65 CTGTTTGTC
* *
50305791 AAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
50305856 TGTTTGTC
66 TGTTTGTC
* * * *
50305864 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTATTTTCAATT
50305929 TCTGTT
64 TCTGTT
50305935 CTTCAATTTC
Statistics
Matches: 130, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
73 54 0.42
74 51 0.39
75 25 0.19
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
TGTTTGTC
Found at i:50305941 original size:14 final size:14
Alignment explanation
Indices: 50305922--50305949 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
50305912 CTGAGGTCTT
50305922 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
50305936 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
50305950 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:50306064 original size:74 final size:72
Alignment explanation
Indices: 50305957--50306173 Score: 308
Period size: 74 Copynumber: 2.9 Consensus size: 72
50305947 TTCGTAAAAA
50305957 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTATTTTT-AATTT
*
50306022 TTGTTTTTC
64 CTGTTTTTC
* *
50306031 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTATTTTTAATTTC
*
50306096 TGTTTGTC
65 TGTTTTTC
* * * *
50306104 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG---ACACGCTGAGGTATTTTTAATT
50306169 TCTGT
63 TCTGT
50306174 CTTCAATTTC
Statistics
Matches: 131, Mismatches: 9, Indels: 5
0.90 0.06 0.03
Matches are distributed among these distances:
72 2 0.02
73 49 0.37
74 56 0.43
75 24 0.18
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (72 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTATTTTTAATTTCT
GTTTTTC
Found at i:50306136 original size:73 final size:73
Alignment explanation
Indices: 50305957--50306173 Score: 326
Period size: 73 Copynumber: 2.9 Consensus size: 73
50305947 TTCGTAAAAA
* *
50305957 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA-TTTTCAATTT
* *
50306022 TTGTTTTTC
65 CTGTTTGTC
*
50306031 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
50306096 TGTTTGTC
66 TGTTTGTC
* * * *
50306104 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTATTTTCAATT
50306169 TCTGT
64 TCTGT
50306174 CTTCAATTTC
Statistics
Matches: 131, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
73 54 0.41
74 53 0.40
75 24 0.18
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
TGTTTGTC
Found at i:50306180 original size:13 final size:13
Alignment explanation
Indices: 50306162--50306186 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50306152 CTGAGGTCTT
50306162 TTCAATTTCTGTC
1 TTCAATTTCTGTC
50306175 TTCAATTTCTGT
1 TTCAATTTCTGT
50306187 TCGTAAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.20, G:0.08, T:0.56
Consensus pattern (13 bp):
TTCAATTTCTGTC
Found at i:50306225 original size:161 final size:160
Alignment explanation
Indices: 50306031--50306333 Score: 491
Period size: 161 Copynumber: 1.9 Consensus size: 160
50306021 TTTGTTTTTC
* *
50306031 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTCAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
* * *
50306096 TGTTTGTC-AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTC
66 TGTTTGTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGG--CACATGCTGAGGTA
*
50306160 TTTTCAATTTCTGTCTTCAATTTCTGTTCGTA
129 ATTTCAATTTCTGTCTTCAATTTCTGTTCGTA
* *
50306192 AAAAATCAACTCATATTGCGAGAGGTCAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTCAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
* *
50306257 TGTTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGGACATGCTGAGGTAAT
66 TGTTTGTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGCACATGCTGAGGTAAT
50306322 TTCAATTTCTGT
131 TTCAATTTCTGT
50306334 TTGTCAAAAA
Statistics
Matches: 131, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
160 25 0.19
161 68 0.52
162 38 0.29
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (160 bp):
AAAAATCAACTCATATTGCGAGAGGTCAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
TGTTTGTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGCACATGCTGAGGTAAT
TTCAATTTCTGTCTTCAATTTCTGTTCGTA
Found at i:50306341 original size:235 final size:237
Alignment explanation
Indices: 50305606--50306423 Score: 1419
Period size: 240 Copynumber: 3.4 Consensus size: 237
50305596 ATTTCTGTTC
* * *
50305606 TTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACA
1 TTCAATTTCTGTTTGT--CAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACA
50305671 TGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAAATCAACTCATATTGC
64 TGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGT--AAAAAAATCAACTCATATTGC
* *
50305736 GAGAGGTGAGTTGAGCCTCAGGATACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCGAC
127 GAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAAC
50305801 TCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAAT
192 TCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAAT
50305847 TTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATG
1 TTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATG
50305912 CTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAAAATCAACTCATATTGCG
66 CTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGT---AAAAAAATCAACTCATATTGCG
*
50305977 AGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTTTGTTTTTCAAAAATCAACT
128 AGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACT
50306042 CATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAAT
193 CATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAAT
50306087 TTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATG
1 TTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATG
50306152 CTGAGGTCTTTTCAATTTCTG-TCTTCAATTTCTGTTCGT-AAAAAATCAACTCATATTGCGAGA
66 CTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAATCAACTCATATTGCGAGA
*
50306215 GGTCAGTTGAGCCTCAGGACACGCTGAGGTATTTTT-AATTTCTGTTTTTCAAAAAATCAACTCA
131 GGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTC-AAAAATCAACTCA
* *
50306279 TATTGCGAAAGGTGAGTTGAGCCTCGGGACATGCTGAGGTAAT
195 TATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAAT
* *
50306322 TTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAAGTGAGTTGAGTCTCGGCTCACATG
1 TTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATG
*
50306387 CTGAGGTCTTTTTAATTTCTGCTT-TTCAATTTCTGTT
66 CTGAGGTCTTTTCAATTTCTG-TTCTTCAATTTCTGTT
50306424 TTTTCAATTT
Statistics
Matches: 560, Mismatches: 13, Indels: 13
0.96 0.02 0.02
Matches are distributed among these distances:
234 13 0.02
235 196 0.35
236 13 0.02
237 1 0.00
239 105 0.19
240 217 0.39
241 15 0.03
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (237 bp):
TTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATG
CTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAATCAACTCATATTGCGAGA
GGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCAT
ATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAAT
Found at i:50306378 original size:73 final size:73
Alignment explanation
Indices: 50306175--50306415 Score: 297
Period size: 74 Copynumber: 3.3 Consensus size: 73
50306165 AATTTCTGTC
* * * * * *
50306175 TTCAATTTCTGTTCGTAAAAAATCAACTCATATTGCGAGAGGTCAGTTGAGCCTCAGGACACGCT
1 TTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACATGCT
50306240 GAGGTATT
66 GAGGTATT
* *
50306248 TTTAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGA-AAGGTGAGTTGAGCCTCGGGACATG
1 TTCAATTTCTGTTTGTC-AAAAATCAACTCATATTGCGAGAA-GTGAGTTGAGCCTCGGGACATG
*
50306312 CTGAGGTAAT
64 CTGAGGTATT
* * *
50306322 TTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAAGTGAGTTGAGTCTCGGCTCACATG
1 TTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGG--GACATG
*
50306387 CTGAGGTCTT
64 CTGAGGTATT
*
50306397 TTTAATTTCTGCTTT-TCAA
1 TTCAATTTCTG-TTTGTCAA
50306416 TTTCTGTTTT
Statistics
Matches: 145, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
73 49 0.34
74 66 0.46
75 27 0.19
76 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.35
Consensus pattern (73 bp):
TTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACATGCT
GAGGTATT
Found at i:50306417 original size:14 final size:15
Alignment explanation
Indices: 50306392--50306433 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
50306382 ACATGCTGAG
*
50306392 GTCTTTTTAATTTCT
1 GTCTTTTCAATTTCT
50306407 G-CTTTTCAATTTCT
1 GTCTTTTCAATTTCT
*
50306421 GTTTTTTCAATTT
1 GTCTTTTCAATTT
50306434 ATATTTTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 13 0.54
15 11 0.46
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.64
Consensus pattern (15 bp):
GTCTTTTCAATTTCT
Found at i:50306429 original size:15 final size:14
Alignment explanation
Indices: 50306395--50306444 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
50306385 TGCTGAGGTC
50306395 TTTTT-AATTTCTG
1 TTTTTCAATTTCTG
*
50306408 CTTTTCAATTTCTG
1 TTTTTCAATTTCTG
* *
50306422 TTTTTTCAATTTATA
1 -TTTTTCAATTTCTG
50306437 TTTTTCAA
1 TTTTTCAA
50306445 AAATCAACTC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 16 0.52
15 11 0.35
ACGTcount: A:0.20, C:0.12, G:0.04, T:0.64
Consensus pattern (14 bp):
TTTTTCAATTTCTG
Found at i:50307227 original size:30 final size:30
Alignment explanation
Indices: 50307191--50307487 Score: 468
Period size: 30 Copynumber: 9.8 Consensus size: 30
50307181 ACTTTTCTCA
*
50307191 ACTAGCCACTCATTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCC
* *
50307221 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCC
50307251 ACTAGCCACTCTTTTTTCCACCACCAACTCC
1 ACTAGCCACTC-TTTTTCCACCACCAACTCC
50307282 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCC
* *
50307312 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCC
50307342 ACTAGCCACTCTTTTTTCCACCACCAACTCC
1 ACTAGCCACTC-TTTTTCCACCACCAACTCC
*
50307373 ACTAGCCATTCTTTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCC
* * *
50307403 ACTAGCCACACCTTTTCAACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCC
50307433 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACTCTTTTTCCACCACCAACTCC
* * *
50307463 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACTCTTTTTCCACCACCA
50307488 CTTGTACCTA
Statistics
Matches: 246, Mismatches: 19, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
30 189 0.77
31 57 0.23
ACGTcount: A:0.25, C:0.47, G:0.03, T:0.24
Consensus pattern (30 bp):
ACTAGCCACTCTTTTTCCACCACCAACTCC
Found at i:50307346 original size:91 final size:91
Alignment explanation
Indices: 50307191--50307487 Score: 533
Period size: 91 Copynumber: 3.3 Consensus size: 91
50307181 ACTTTTCTCA
*
50307191 ACTAGCCACTCATTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
50307256 CCACTCTTTTTTCCACCACCAACTCC
66 CCACTCTTTTTTCCACCACCAACTCC
50307282 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
50307347 CCACTCTTTTTTCCACCACCAACTCC
66 CCACTCTTTTTTCCACCACCAACTCC
* *
50307373 ACTAGCCATTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCAACCACCAACTCCACTAG
1 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
50307438 CCACTC-TTTTTCCACCACCAACTCC
66 CCACTCTTTTTTCCACCACCAACTCC
* * *
50307463 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACTCTTTTTCCACCACCA
50307488 CTTGTACCTA
Statistics
Matches: 199, Mismatches: 7, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
90 40 0.20
91 159 0.80
ACGTcount: A:0.25, C:0.47, G:0.03, T:0.24
Consensus pattern (91 bp):
ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
CCACTCTTTTTTCCACCACCAACTCC
Found at i:50307393 original size:121 final size:121
Alignment explanation
Indices: 50307191--50307487 Score: 488
Period size: 121 Copynumber: 2.5 Consensus size: 121
50307181 ACTTTTCTCA
50307191 ACTAGCCACTCATTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
1 ACTAGCCACTCATTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
* * *
50307256 CCACTCTTTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCCACCACCAACTCC
66 CCACTCTTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCAACCACCAACTCC
* * * *
50307312 ACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTTCCACCACCAACTCCACTA
1 ACTAGCCACTCATTTTCCACCACCAACTCCACTAGCCACAC-CTTTTCCACCACCAACTCCACTA
*
50307377 GCCATTC-TTTTTCCACCACCAACTCCACTAGCCACACCTTTTCAACCACCAACTCC
65 GCCACTCTTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCAACCACCAACTCC
* *
50307433 ACTAGCCACTCTTTTTCCACCACCAACTCCACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACTCATTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCA
50307488 CTTGTACCTA
Statistics
Matches: 162, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
120 12 0.07
121 122 0.75
122 28 0.17
ACGTcount: A:0.25, C:0.47, G:0.03, T:0.24
Consensus pattern (121 bp):
ACTAGCCACTCATTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
CCACTCTTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCAACCACCAACTCC
Found at i:50308106 original size:25 final size:25
Alignment explanation
Indices: 50308078--50308135 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
50308068 TATTACGTAT
* *
50308078 ATATATATTTTATACTATTTTATGC
1 ATATATATTTAATACTATATTATGC
* * **
50308103 ATATATCTTTAATATTATATTATTT
1 ATATATATTTAATACTATATTATGC
50308128 ATATATAT
1 ATATATAT
50308136 ATATTTTTAC
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.57
Consensus pattern (25 bp):
ATATATATTTAATACTATATTATGC
Found at i:50308180 original size:22 final size:24
Alignment explanation
Indices: 50308154--50308212 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
50308144 ACATGTTATC
50308154 TTATGTATATATCTT-A-ACTATA
1 TTATGTATATATCTTAACACTATA
* *
50308176 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATA-TCTTAACACTATA
*
50308201 TTATGTACATAT
1 TTATGTATATAT
50308213 TTTTAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 10 0.33
23 3 0.10
24 2 0.07
25 15 0.50
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (24 bp):
TTATGTATATATCTTAACACTATA
Found at i:50308202 original size:25 final size:25
Alignment explanation
Indices: 50308170--50308218 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
50308160 ATATATCTTA
**
50308170 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
50308195 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
50308219 TATTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:50308394 original size:16 final size:15
Alignment explanation
Indices: 50308370--50308417 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
50308360 TAATTATTAT
*
50308370 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
50308386 TATTTTAATATTTTA
1 TATTTTAATATTTTA
50308401 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
50308417 T
1 T
50308418 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:50308405 original size:7 final size:8
Alignment explanation
Indices: 50308370--50308421 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
50308360 TAATTATTAT
*
50308370 TATTCTAA
1 TATTTTAA
*
50308378 TATTTTGA
1 TATTTTAA
50308386 TATTTTAA
1 TATTTTAA
50308394 TATTTT-A
1 TATTTTAA
50308401 TATTTTATA
1 TATTTTA-A
*
50308410 TATTTTAT
1 TATTTTAA
50308418 TATT
1 TATT
50308422 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:50315844 original size:25 final size:25
Alignment explanation
Indices: 50315792--50315844 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
50315782 TATGCTTTTA
* *
50315792 TATATATATATTATAAATTATAGAT
1 TATAGATATATTATAAATTAAAGAT
* * *
50315817 TATAGATATATTGTAGATTAAAGTT
1 TATAGATATATTATAAATTAAAGAT
50315842 TAT
1 TAT
50315845 GAAAAGTGTA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.47
Consensus pattern (25 bp):
TATAGATATATTATAAATTAAAGAT
Found at i:50320847 original size:36 final size:38
Alignment explanation
Indices: 50320807--50320880 Score: 116
Period size: 36 Copynumber: 2.0 Consensus size: 38
50320797 TAAAGAAATT
* *
50320807 TATAAATTCTTAAAAATTTAAAA-TTT-AAAAAGTAAA
1 TATAAATTATAAAAAATTTAAAATTTTCAAAAAGTAAA
50320843 TATAAATTATAAAAAATTTAAAATTTTCAAAAAGTAAA
1 TATAAATTATAAAAAATTTAAAATTTTCAAAAAGTAAA
50320881 AACAGAAGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
36 21 0.62
37 3 0.09
38 10 0.29
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (38 bp):
TATAAATTATAAAAAATTTAAAATTTTCAAAAAGTAAA
Found at i:50321375 original size:72 final size:71
Alignment explanation
Indices: 50321286--50321418 Score: 223
Period size: 72 Copynumber: 1.9 Consensus size: 71
50321276 TTTTGAATTG
*
50321286 TTTATTATTTATTTTATAATATTTTAATTGTTTTATAATATTTGTTTATTCAAACATGTTTTTTT
1 TTTATTATTTATTTTATAATATTTTAAATGTTTTATAATATTTGTTTATTCAAACAT-TTTTTTT
50321351 AAATTTT
65 AAATTTT
*
50321358 TTTATTA-TTATTTTTATAATATTTTAAATGTTTTATAATATTTTTTTATTCAAACATTTTT
1 TTTATTATTTA-TTTTATAATATTTTAAATGTTTTATAATATTTGTTTATTCAAACATTTTT
50321419 AAAATATATA
Statistics
Matches: 58, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
71 7 0.12
72 51 0.88
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (71 bp):
TTTATTATTTATTTTATAATATTTTAAATGTTTTATAATATTTGTTTATTCAAACATTTTTTTTA
AATTTT
Found at i:50321380 original size:11 final size:11
Alignment explanation
Indices: 50321346--50321402 Score: 50
Period size: 10 Copynumber: 5.5 Consensus size: 11
50321336 CAAACATGTT
*
50321346 TTTTTA-AATT
1 TTTTTATAATA
*
50321356 TTTTTATTATTA
1 TTTTTA-TAATA
50321368 TTTTTATAATA
1 TTTTTATAATA
50321379 -TTTTA-AAT-
1 TTTTTATAATA
*
50321387 GTTTTATAATA
1 TTTTTATAATA
50321398 TTTTT
1 TTTTT
50321403 TTATTCAAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
9 8 0.21
10 14 0.37
11 8 0.21
12 8 0.21
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (11 bp):
TTTTTATAATA
Found at i:50321602 original size:22 final size:21
Alignment explanation
Indices: 50321572--50321648 Score: 52
Period size: 23 Copynumber: 3.5 Consensus size: 21
50321562 TTTAAATATA
50321572 ATTTAAAAAAAATATTATAAAAC
1 ATTT-AAAAAAA-ATTATAAAAC
*
50321595 ATTTAAAATATACATT-TAAAGA-
1 ATTTAAAA-A-AAATTATAAA-AC
*
50321617 ATTATAAAAAAAATAAT-AAAC
1 ATT-TAAAAAAAATTATAAAAC
*
50321638 AATTAAAAAAA
1 ATTTAAAAAAA
50321649 CCAATTTAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 15
0.70 0.06 0.24
Matches are distributed among these distances:
20 9 0.20
21 7 0.16
22 13 0.30
23 14 0.32
24 1 0.02
ACGTcount: A:0.66, C:0.04, G:0.01, T:0.29
Consensus pattern (21 bp):
ATTTAAAAAAAATTATAAAAC
Found at i:50321658 original size:22 final size:21
Alignment explanation
Indices: 50321608--50321658 Score: 50
Period size: 22 Copynumber: 2.3 Consensus size: 21
50321598 TAAAATATAC
*
50321608 ATTTAAAGAATTATAAAAAAA
1 ATTTAAACAATTATAAAAAAA
*
50321629 ATAATAAACAATTA-AAAAAACCA
1 AT-TTAAACAATTATAAAAAA--A
50321652 ATTTAAA
1 ATTTAAA
50321659 AAAAACCGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
21 8 0.33
22 13 0.54
23 3 0.12
ACGTcount: A:0.67, C:0.06, G:0.02, T:0.25
Consensus pattern (21 bp):
ATTTAAACAATTATAAAAAAA
Found at i:50321706 original size:13 final size:13
Alignment explanation
Indices: 50321690--50321715 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
50321680 ATATTATAAA
50321690 ACATTTAAAATAT
1 ACATTTAAAATAT
50321703 ACATTTAAAATAT
1 ACATTTAAAATAT
50321716 TATAATACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (13 bp):
ACATTTAAAATAT
Found at i:50322377 original size:22 final size:22
Alignment explanation
Indices: 50322352--50322396 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
50322342 AAAATTTAAA
50322352 AAAGAAAATATAAAAATATTTT
1 AAAGAAAATATAAAAATATTTT
* * * *
50322374 AAAGATATTATGAATATATTTT
1 AAAGAAAATATAAAAATATTTT
50322396 A
1 A
50322397 TAATTTTTAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.38
Consensus pattern (22 bp):
AAAGAAAATATAAAAATATTTT
Found at i:50329600 original size:104 final size:104
Alignment explanation
Indices: 50329415--50329662 Score: 252
Period size: 104 Copynumber: 2.4 Consensus size: 104
50329405 CCCGTATGCA
* * * * *
50329415 TGCCCATATGGCTTACACGGCCTAACACACGCCCGTGTCGTCTGCTTGTGTGGTTCAAAATCGTA
1 TGCCCATGTGGCTCACACGGCCTGACACACGCCCGTGTCATCTGCTTGTGAGGTTCAAAATCGTA
*
50329480 AACAATGAGTCACACGGCCTAGCCAC-TCG-CTCGTGTCCT
66 AACAATGAGTCACACGGCCTAGACACAT-GTC-CGTGTCCT
* * * * *
50329519 TGCCCGTGTGGCTCACACGGCCTGACACTCGCCTGTGTCATCTGGCATTGT-AGG-TCTAAATCT
1 TGCCCATGTGGCTCACACGGCCTGACACACGCCCGTGTCATCT-GC-TTGTGAGGTTCAAAATCG
* * * * *
50329582 TAATCACTGAGTCGCACGGCTTGGACACATGTCCGTGTCCT
64 TAAACAATGAGTCACACGGCCTAGACACATGTCCGTGTCCT
* * *
50329623 TGCCCATGTGACTCACACAGCCTGGGCACACGCCCGTGTC
1 TGCCCATGTGGCTCACACGGCCT-GACACACGCCCGTGTC
50329663 CCTGGCCAGT
Statistics
Matches: 117, Mismatches: 22, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
104 94 0.80
105 19 0.16
106 4 0.03
ACGTcount: A:0.19, C:0.32, G:0.24, T:0.25
Consensus pattern (104 bp):
TGCCCATGTGGCTCACACGGCCTGACACACGCCCGTGTCATCTGCTTGTGAGGTTCAAAATCGTA
AACAATGAGTCACACGGCCTAGACACATGTCCGTGTCCT
Found at i:50333404 original size:17 final size:18
Alignment explanation
Indices: 50333378--50333411 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
50333368 GTTCTGTTCT
*
50333378 TTTTTTCTTTTT-ATTTG
1 TTTTTCCTTTTTCATTTG
50333395 TTTTTCCTTTTTCATTT
1 TTTTTCCTTTTTCATTT
50333412 TCTATTTTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.06, C:0.12, G:0.03, T:0.79
Consensus pattern (18 bp):
TTTTTCCTTTTTCATTTG
Found at i:50334124 original size:15 final size:14
Alignment explanation
Indices: 50334067--50334187 Score: 68
Period size: 15 Copynumber: 9.1 Consensus size: 14
50334057 GTATATCTAT
50334067 TTATATTTTATACTA
1 TTATATTTTATA-TA
*
50334082 TTCATACTTT-T-T-
1 TT-ATATTTTATATA
50334094 TTATATTTTATATA
1 TTATATTTTATATA
*
50334108 TTATATGTTTGTATA
1 TTATAT-TTTATATA
50334123 -T-T-TTTTATATA
1 TTATATTTTATATA
50334134 TTAT-TCTTT-TATA
1 TTATAT-TTTATATA
50334147 -TAT-TTTTAT-T-
1 TTATATTTTATATA
*
50334157 TTATTTTTTATATA
1 TTATATTTTATATA
* *
50334171 TGTATAATATATATA
1 T-TATATTTTATATA
50334186 TT
1 TT
50334188 CATACCCCAT
Statistics
Matches: 85, Mismatches: 7, Indels: 29
0.70 0.06 0.24
Matches are distributed among these distances:
11 20 0.24
12 16 0.19
13 10 0.12
14 12 0.14
15 21 0.25
16 6 0.07
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.65
Consensus pattern (14 bp):
TTATATTTTATATA
Found at i:50334128 original size:26 final size:25
Alignment explanation
Indices: 50334068--50334171 Score: 94
Period size: 26 Copynumber: 4.2 Consensus size: 25
50334058 TATATCTATT
*
50334068 TATA-TTTTATACTATTCATACTTTT-
1 TATATTTTTATA-TATT-ATTCTTTTA
* *
50334093 TTTATATTTTATATATTATATGTTTGTA
1 TATAT-TTTTATATATTAT-TCTTT-TA
50334121 TAT-TTTTTATATATTATTCTTTTA
1 TATATTTTTATATATTATTCTTTTA
50334145 TATATTTTTAT-T-TTATT-TTTTA
1 TATATTTTTATATATTATTCTTTTA
50334167 TATAT
1 TATAT
50334172 GTATAATATA
Statistics
Matches: 68, Mismatches: 5, Indels: 15
0.77 0.06 0.17
Matches are distributed among these distances:
22 10 0.15
23 5 0.07
24 6 0.09
25 16 0.24
26 20 0.29
27 9 0.13
28 2 0.03
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (25 bp):
TATATTTTTATATATTATTCTTTTA
Found at i:50334170 original size:24 final size:23
Alignment explanation
Indices: 50334090--50334171 Score: 78
Period size: 25 Copynumber: 3.4 Consensus size: 23
50334080 TATTCATACT
* * *
50334090 TTTTTTATATTTTATATATTATATG
1 TTTTATATATTTT-TATTTTAT-TC
50334115 TTTGTATAT-TTTTTATATATTATTC
1 TTT-TATATATTTTTAT-T-TTATTC
50334140 TTTTATATATTTTTATTTTATT-
1 TTTTATATATTTTTATTTTATTC
50334162 TTTTATATAT
1 TTTTATATAT
50334172 GTATAATATA
Statistics
Matches: 50, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
22 10 0.20
23 5 0.10
24 9 0.18
25 18 0.36
26 8 0.16
ACGTcount: A:0.26, C:0.01, G:0.02, T:0.71
Consensus pattern (23 bp):
TTTTATATATTTTTATTTTATTC
Found at i:50336488 original size:15 final size:15
Alignment explanation
Indices: 50336465--50336494 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
50336455 GGGCTACATG
50336465 GCCTCGGAAGGTTGC
1 GCCTCGGAAGGTTGC
*
50336480 GCCTTGGAAGGTTGC
1 GCCTCGGAAGGTTGC
50336495 TAGTTCGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.23, G:0.40, T:0.23
Consensus pattern (15 bp):
GCCTCGGAAGGTTGC
Found at i:50345930 original size:50 final size:50
Alignment explanation
Indices: 50345802--50345988 Score: 203
Period size: 50 Copynumber: 3.6 Consensus size: 50
50345792 AAAGAGATCA
* *
50345802 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGACTATGAAAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATGAGAGGTCC
*
50345858 CATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCC
** * * * **
50345908 CCCGTAAGACCATGTCTAGGACATGGCATGGGCACCGATATGAGAACTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCC
* * *
50345958 CATGTAAGACCATATCTGAGATATGGCATTG
1 CATGTAAGACCATGTCTGGGACATGGCATTG
50345989 ACAGTATAGA
Statistics
Matches: 113, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
50 76 0.67
53 3 0.03
55 1 0.01
56 33 0.29
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (50 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCC
Found at i:50352689 original size:25 final size:25
Alignment explanation
Indices: 50352660--50352709 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
50352650 AACAATTTGA
*
50352660 GAACAATCCTGGGTCCTTTTGAAAC
1 GAACAATCCAGGGTCCTTTTGAAAC
50352685 GAACAATCCAGGGTCCTTTTGAAAC
1 GAACAATCCAGGGTCCTTTTGAAAC
50352710 AAAATGGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (25 bp):
GAACAATCCAGGGTCCTTTTGAAAC
Found at i:50355131 original size:28 final size:31
Alignment explanation
Indices: 50355096--50355153 Score: 86
Period size: 28 Copynumber: 2.0 Consensus size: 31
50355086 GTAAATTTGA
*
50355096 AATTTAATTTTT-TA-TTTT-TATTTTAAAT
1 AATTTAATTTTTATACTTTTAAATTTTAAAT
50355124 AATTTAATTTTTATACTTTTAAATTTTAAA
1 AATTTAATTTTTATACTTTTAAATTTTAAA
50355154 ATTACAATTC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 12 0.46
29 2 0.08
30 4 0.15
31 8 0.31
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (31 bp):
AATTTAATTTTTATACTTTTAAATTTTAAAT
Found at i:50355988 original size:17 final size:18
Alignment explanation
Indices: 50355966--50356002 Score: 67
Period size: 17 Copynumber: 2.1 Consensus size: 18
50355956 ATCTTTATGA
50355966 ATATTATATTTA-ATTTT
1 ATATTATATTTATATTTT
50355983 ATATTATATTTATATTTT
1 ATATTATATTTATATTTT
50356001 AT
1 AT
50356003 TATATTTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
ATATTATATTTATATTTT
Found at i:50360127 original size:25 final size:25
Alignment explanation
Indices: 50360093--50360140 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
50360083 ACTTTTATTG
50360093 ATGACTTTTCCAGAAAAGTGTGGGC
1 ATGACTTTTCCAGAAAAGTGTGGGC
*
50360118 ATGATTTTTCCAGAAAAGTGTGG
1 ATGACTTTTCCAGAAAAGTGTGG
50360141 ACGTTCTTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.31
Consensus pattern (25 bp):
ATGACTTTTCCAGAAAAGTGTGGGC
Found at i:50372107 original size:72 final size:72
Alignment explanation
Indices: 50371990--50372132 Score: 259
Period size: 72 Copynumber: 2.0 Consensus size: 72
50371980 TCTCGGATTT
* * *
50371990 AAAAAAGGGATCATGCCCAGTAAGTTAGGACACGATCTTTTCTTAATTCCCGAGATCGTTTAAAA
1 AAAAAAGGGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCAAGATCATTTAAAA
50372055 CTTGAGA
66 CTTGAGA
50372062 AAAAAAGGGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCAAGATCATTTAAAA
1 AAAAAAGGGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCAAGATCATTTAAAA
50372127 CTTGAG
66 CTTGAG
50372133 TTTGAAGAGA
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 68 1.00
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (72 bp):
AAAAAAGGGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCCAAGATCATTTAAAA
CTTGAGA
Found at i:50372891 original size:18 final size:20
Alignment explanation
Indices: 50372870--50372943 Score: 71
Period size: 23 Copynumber: 3.6 Consensus size: 20
50372860 ATAATTTTAG
50372870 AATAATA-ATACATAT-TAA
1 AATAATATATACATATATAA
50372888 AATAATATATACATATATAA
1 AATAATATATACATATATAA
* * * *
50372908 AGATAAAAGATATATAAAGATAA
1 A-AT--AATATATACATATATAA
50372931 AATAATATATACA
1 AATAATATATACA
50372944 GGAGTAATAA
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
18 7 0.16
19 8 0.18
20 12 0.27
21 2 0.04
22 2 0.04
23 14 0.31
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (20 bp):
AATAATATATACATATATAA
Found at i:50372894 original size:21 final size:21
Alignment explanation
Indices: 50372871--50372913 Score: 65
Period size: 19 Copynumber: 2.2 Consensus size: 21
50372861 TAATTTTAGA
50372871 ATAATA-ATACATAT-TAAA-
1 ATAATATATACATATATAAAG
50372889 ATAATATATACATATATAAAG
1 ATAATATATACATATATAAAG
50372910 ATAA
1 ATAA
50372914 AAGATATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 6 0.27
19 8 0.36
20 4 0.18
21 4 0.18
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (21 bp):
ATAATATATACATATATAAAG
Found at i:50372922 original size:17 final size:17
Alignment explanation
Indices: 50372900--50372932 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
50372890 TAATATATAC
50372900 ATATATAAAGATAAAAG
1 ATATATAAAGATAAAAG
50372917 ATATATAAAGATAAAA
1 ATATATAAAGATAAAA
50372933 TAATATATAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24
Consensus pattern (17 bp):
ATATATAAAGATAAAAG
Found at i:50374571 original size:44 final size:44
Alignment explanation
Indices: 50374516--50374619 Score: 122
Period size: 44 Copynumber: 2.4 Consensus size: 44
50374506 CTGCGACCTA
*
50374516 AGAGAGATAAGGTTTG-TATCTTCAACCTGC-CACACTACAACTTC
1 AGAGAGATAAGGTTTGTTA-CTTCAACCTACTC-CACTACAACTTC
* * * * *
50374560 AGGGGGATAAGGTTTGTTACTTTAACCTACTCTACTGCAACTTC
1 AGAGAGATAAGGTTTGTTACTTCAACCTACTCCACTACAACTTC
50374604 AGAGAGATAAGGTTTG
1 AGAGAGATAAGGTTTG
50374620 ATATGATCTG
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
44 47 0.94
45 3 0.06
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (44 bp):
AGAGAGATAAGGTTTGTTACTTCAACCTACTCCACTACAACTTC
Found at i:50375166 original size:220 final size:219
Alignment explanation
Indices: 50374752--50375292 Score: 654
Period size: 220 Copynumber: 2.5 Consensus size: 219
50374742 GGAGACAGGG
* * * ** * *
50374752 TCTAAAATCTTTAACCTATTCTGCTGCAACTCAGGGAGATAGGATTGGTGGCTTAAATCTT-CTT
1 TCTACAATCTTCAACCTACTCCACTGCTACTCAGGGAGATAGGACTGGTGGCTTAAAT-TTGCTT
* * * * *
50374816 CCCTACTACATTGGGAAGATAAGATTCGCCATCTTTAATCTGCTCCACTAGTGCTTAGGGAGACA
65 -CCTACTACCTTGGGAAGATAAGATTCGCCATCTTCAATCTGCTCCACTACTGCTTAAGGACACA
* * *** * * * **
50374881 GGATCTACAATCTTCAACCTACTCTACTGCTATTTAAAGAGATAAGGCTGGTGTTTTTTATCTGC
129 GGATCTACAATCTTCAACCTACTCCACTACTACCCAAAGAGATAAGGATAGTGCTTTCAATCTGC
*
50374946 TTCACTGCTGGTACAGGAAGACAAAA
194 TTCACTGCTAGTACAGGAAGACAAAA
* * * *
50374972 TCTACAATCTTCAACTTACTCTACTGCTATTCAGGGAGATAGCACTGGTGGCTTAAATTTGCTTC
1 TCTACAATCTTCAACCTACTCCACTGCTACTCAGGGAGATAGGACTGGTGGCTTAAATTTGCTTC
* *
50375037 TCTACTACCTTGGGAAGATAAGATTCGCCCTCTTCAATCTGCTCCACTACTGCTTAAGGACACAT
66 -CTACTACCTTGGGAAGATAAGATTCGCCATCTTCAATCTGCTCCACTACTGCTTAAGGACACAG
* * *
50375102 GATCTGCAATCTTCAACCTTCTCCACTACTACCC-AGGAAGATAAGGATAGTGCTTTCAATCTGC
130 GATCTACAATCTTCAACCTACTCCACTACTACCCAAAG-AGATAAGGATAGTGCTTTCAATCTGC
* *
50375166 TTCACTGCTAGTACAGGAAGACGAGA
194 TTCACTGCTAGTACAGGAAGACAAAA
* * * *
50375192 TCTACAATCTTCGACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGTGGCTTAAGTCTGCTTC
1 TCTACAATCTTCAACCTACTCCACTGCTACTCAGGGAGATAGGACTGGTGGCTTAAATTTGCTTC
** *
50375257 CTTACTACCTTTTGAAGATAAGATTCGCCGTCTTCA
66 C-TACTACCTTGGGAAGATAAGATTCGCCATCTTCA
50375293 GCTTTAATCT
Statistics
Matches: 274, Mismatches: 43, Indels: 8
0.84 0.13 0.02
Matches are distributed among these distances:
219 6 0.02
220 268 0.98
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (219 bp):
TCTACAATCTTCAACCTACTCCACTGCTACTCAGGGAGATAGGACTGGTGGCTTAAATTTGCTTC
CTACTACCTTGGGAAGATAAGATTCGCCATCTTCAATCTGCTCCACTACTGCTTAAGGACACAGG
ATCTACAATCTTCAACCTACTCCACTACTACCCAAAGAGATAAGGATAGTGCTTTCAATCTGCTT
CACTGCTAGTACAGGAAGACAAAA
Found at i:50379806 original size:5 final size:5
Alignment explanation
Indices: 50379798--50379836 Score: 51
Period size: 5 Copynumber: 7.4 Consensus size: 5
50379788 TTTTTCGCTC
*
50379798 TTCTT TTCTT TTCTT TTCTTTT TTCTT TTCGT TTCTT TT
1 TTCTT TTCTT TTCTT TTC--TT TTCTT TTCTT TTCTT TT
50379837 TTTCAAGTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
5 25 0.83
7 5 0.17
ACGTcount: A:0.00, C:0.18, G:0.03, T:0.79
Consensus pattern (5 bp):
TTCTT
Found at i:50379821 original size:17 final size:17
Alignment explanation
Indices: 50379796--50379838 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
50379786 CTTTTTTCGC
*
50379796 TCTTCTTTTCTTTTCTTT
1 TCTT-TTTTCTTTTCGTT
50379814 TCTTTTTTCTTTTCGTT
1 TCTTTTTTCTTTTCGTT
50379831 TCTTTTTT
1 TCTTTTTT
50379839 TCAAGTGAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 20 0.83
18 4 0.17
ACGTcount: A:0.00, C:0.19, G:0.02, T:0.79
Consensus pattern (17 bp):
TCTTTTTTCTTTTCGTT
Found at i:50383233 original size:21 final size:21
Alignment explanation
Indices: 50383210--50383252 Score: 65
Period size: 19 Copynumber: 2.2 Consensus size: 21
50383200 TAATTTTAGA
50383210 ATAATA-ATACATAT-TAAA-
1 ATAATATATACATATATAAAG
50383228 ATAATATATACATATATAAAG
1 ATAATATATACATATATAAAG
50383249 ATAA
1 ATAA
50383253 AAGATATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 6 0.27
19 8 0.36
20 4 0.18
21 4 0.18
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (21 bp):
ATAATATATACATATATAAAG
Found at i:50383261 original size:17 final size:17
Alignment explanation
Indices: 50383239--50383271 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
50383229 TAATATATAC
50383239 ATATATAAAGATAAAAG
1 ATATATAAAGATAAAAG
50383256 ATATATAAAGATAAAA
1 ATATATAAAGATAAAA
50383272 TAATATATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24
Consensus pattern (17 bp):
ATATATAAAGATAAAAG
Found at i:50390801 original size:14 final size:14
Alignment explanation
Indices: 50390782--50390811 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
50390772 TTACTCATCT
50390782 TTTTATTTTCAAGC
1 TTTTATTTTCAAGC
50390796 TTTTATTTTCAAGC
1 TTTTATTTTCAAGC
50390810 TT
1 TT
50390812 AAATTTATAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.13, G:0.07, T:0.60
Consensus pattern (14 bp):
TTTTATTTTCAAGC
Found at i:50393377 original size:9 final size:9
Alignment explanation
Indices: 50393365--50393389 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
50393355 GATGATGTAT
50393365 TTATTATTG
1 TTATTATTG
50393374 TTATTATTG
1 TTATTATTG
50393383 TTATTAT
1 TTATTAT
50393390 AGCATTTGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (9 bp):
TTATTATTG
Found at i:50393794 original size:97 final size:97
Alignment explanation
Indices: 50393675--50393860 Score: 363
Period size: 97 Copynumber: 1.9 Consensus size: 97
50393665 TAAAGGAAAT
50393675 ATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTTAAATCTTG
1 ATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTTAAATCTTG
50393740 GATAAGTGGATGTTCTTTTAAAGTAAAAAAAA
66 GATAAGTGGATGTTCTTTTAAAGTAAAAAAAA
*
50393772 ATTCCGAGTTTGGGATTTTAAAGGAATTGTTCCCTAACGTATTGGGTGTGATTTCTTAAATCTTG
1 ATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTTAAATCTTG
50393837 GATAAGTGGATGTTCTTTTAAAGT
66 GATAAGTGGATGTTCTTTTAAAGT
50393861 TTTATTGTAC
Statistics
Matches: 88, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
97 88 1.00
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.39
Consensus pattern (97 bp):
ATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTTAAATCTTG
GATAAGTGGATGTTCTTTTAAAGTAAAAAAAA
Found at i:50395805 original size:25 final size:25
Alignment explanation
Indices: 50395771--50395820 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
50395761 CTCACTCCAG
50395771 AGCCAACTTTGTTAATCATGCTATC
1 AGCCAACTTTGTTAATCATGCTATC
50395796 AGCCAACTTTGTTAATCATGCTATC
1 AGCCAACTTTGTTAATCATGCTATC
50395821 CCTGATTTCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.36
Consensus pattern (25 bp):
AGCCAACTTTGTTAATCATGCTATC
Done.