Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60343961
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 596159 characters in sequence are not A, C, G, or T
File 171 of 204
Found at i:50996932 original size:14 final size:15
Alignment explanation
Indices: 50996892--50996932 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
50996882 CAATTTTATT
*
50996892 ATTTAAATTTTT-AAT
1 ATTT-AATTTTTCAAA
50996907 ATTTAATTTTTCAAA
1 ATTTAATTTTTCAAA
50996922 ATTT-ATTTTTC
1 ATTTAATTTTTC
50996933 CAATTTATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 14 0.58
15 10 0.42
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (15 bp):
ATTTAATTTTTCAAA
Found at i:50997080 original size:13 final size:13
Alignment explanation
Indices: 50997042--50997084 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
50997032 GCTCAATGCA
*
50997042 AAATTGTAATTTT
1 AAATTCTAATTTT
* * *
50997055 GAATTTTATTTTT
1 AAATTCTAATTTT
50997068 AAATTCTAATTTT
1 AAATTCTAATTTT
50997081 AAAT
1 AAAT
50997085 CAAAATAAAA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (13 bp):
AAATTCTAATTTT
Found at i:51004038 original size:79 final size:76
Alignment explanation
Indices: 51003927--51004215 Score: 219
Period size: 79 Copynumber: 3.7 Consensus size: 76
51003917 ATTAGATAAC
** * *
51003927 ATAATTAGGAATTTAATTAATAGGTTAGATAATAATTTAGATTTTAGTTAAGATAATTAGAGTTC
1 ATAATTAACAATTTAAAT-ATAGGTTAGATAATAATTTAGATTTTAATTAAGATAATTAGAGTT-
51003992 TAATTTATTTAAG
64 TAATTTATTTAAG
* * * * *
51004005 ATAATTAACAATTTAAACTCATAGGTTAGATAATAATTCAAATTTTAGTTAAGATAATTAATAAT
1 ATAATTAACAATTTAAA-T-ATAGGTTAGATAATAATTTAGATTTTAATTAAGATAATT-AGAGT
** *
51004070 TTAAATCAAATTAAG
63 TT-AATTTATTTAAG
* * * * * * * * *
51004085 ATAATT-AGAATTCT-AATTTA-GATA-ATTAAGAGTTT-GAATTAAATTAGGATAACTAGAGTT
1 ATAATTAACAATT-TAAATATAGGTTAGA-TAATAATTTAGATTTTAATTAAGATAATTAGAG-T
*
51004145 TTAATTTATTTAAA
63 TTAATTTATTTAAG
* * *
51004159 ATAATTAATAAATTAAATTAATAGGTTAGATAATAATTTATATTTTAATTAAGATAA
1 ATAATTAACAATTTAAA-T-ATAGGTTAGATAATAATTTAGATTTTAATTAAGATAA
51004216 AGTGAAAGTA
Statistics
Matches: 159, Mismatches: 39, Indels: 25
0.71 0.17 0.11
Matches are distributed among these distances:
74 17 0.11
75 23 0.14
76 10 0.06
77 4 0.03
78 25 0.16
79 60 0.38
80 20 0.13
ACGTcount: A:0.46, C:0.03, G:0.10, T:0.41
Consensus pattern (76 bp):
ATAATTAACAATTTAAATATAGGTTAGATAATAATTTAGATTTTAATTAAGATAATTAGAGTTTA
ATTTATTTAAG
Found at i:51004105 original size:53 final size:53
Alignment explanation
Indices: 51003974--51004176 Score: 172
Period size: 53 Copynumber: 3.9 Consensus size: 53
51003964 TAGATTTTAG
* * *
51003974 TTAAGATAATTAGAGTTCTAATTTATTTAAGATAATTAACAATTTAAACTCATAGG
1 TTAAGATAATTAGAATTCTAATTTATTTAAGATAATTAATAATTTAAA-TCA-A-A
* *
51004030 TT-AGATAA-T--AATTCAAATTTTAGTTAAGATAATTAATAATTTAAATCAAA
1 TTAAGATAATTAGAATTCTAA-TTTATTTAAGATAATTAATAATTTAAATCAAA
* * * *
51004080 TTAAGATAATTAGAATTCT-A---ATTT-AGATAATTAAGAGTTTGAATTAAA
1 TTAAGATAATTAGAATTCTAATTTATTTAAGATAATTAATAATTTAAATCAAA
* * * * * *
51004128 TTAGGATAACTAGAGTTTTAATTTATTTAAAATAATTAATAAATTAAAT
1 TTAAGATAATTAGAATTCTAATTTATTTAAGATAATTAATAATTTAAAT
51004177 TAATAGGTTA
Statistics
Matches: 117, Mismatches: 20, Indels: 23
0.73 0.12 0.14
Matches are distributed among these distances:
48 35 0.30
49 4 0.03
50 2 0.02
51 7 0.06
52 14 0.12
53 41 0.35
54 6 0.05
55 6 0.05
56 2 0.02
ACGTcount: A:0.46, C:0.04, G:0.09, T:0.40
Consensus pattern (53 bp):
TTAAGATAATTAGAATTCTAATTTATTTAAGATAATTAATAATTTAAATCAAA
Found at i:51004111 original size:48 final size:48
Alignment explanation
Indices: 51004056--51004152 Score: 122
Period size: 48 Copynumber: 2.0 Consensus size: 48
51004046 ATTTTAGTTA
* *
51004056 AGATAATTAATAATTTAAATCAAATTAAGATAATTAGAATTCTAATTT
1 AGATAATTAAGAATTTAAATCAAATTAAGATAACTAGAATTCTAATTT
* * * * * *
51004104 AGATAATTAAGAGTTTGAATTAAATTAGGATAACTAGAGTTTTAATTT
1 AGATAATTAAGAATTTAAATCAAATTAAGATAACTAGAATTCTAATTT
51004152 A
1 A
51004153 TTTAAAATAA
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.46, C:0.03, G:0.11, T:0.39
Consensus pattern (48 bp):
AGATAATTAAGAATTTAAATCAAATTAAGATAACTAGAATTCTAATTT
Found at i:51011262 original size:3 final size:3
Alignment explanation
Indices: 51011256--51011281 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
51011246 TAAAATAGTC
51011256 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
51011282 GGATATGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:51011333 original size:27 final size:29
Alignment explanation
Indices: 51011284--51011343 Score: 72
Period size: 27 Copynumber: 2.1 Consensus size: 29
51011274 TAATAATAGG
**
51011284 ATATGAAACATTTTAAAGAATA-T-ATAT
1 ATATGAAACATTCGAAAGAATATTCATAT
51011311 ATATGAAA-ATTCGAAAGACATATTCATAT
1 ATATGAAACATTCGAAAGA-ATATTCATAT
51011340 ATAT
1 ATAT
51011344 AATAGTTTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 8 0.29
27 11 0.39
28 1 0.04
29 8 0.29
ACGTcount: A:0.50, C:0.07, G:0.08, T:0.35
Consensus pattern (29 bp):
ATATGAAACATTCGAAAGAATATTCATAT
Found at i:51018188 original size:15 final size:16
Alignment explanation
Indices: 51018149--51018190 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
51018139 ATTATGTCTT
51018149 CATATATTTTAATAAA
1 CATATATTTTAATAAA
* *
51018165 CAT-TTTTTTATTAAA
1 CATATATTTTAATAAA
51018180 -ATATATTTTAA
1 CATATATTTTAA
51018191 ATCTTCCTAC
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
14 2 0.10
15 16 0.76
16 3 0.14
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (16 bp):
CATATATTTTAATAAA
Found at i:51018213 original size:28 final size:28
Alignment explanation
Indices: 51018180--51018239 Score: 111
Period size: 28 Copynumber: 2.1 Consensus size: 28
51018170 TTTTATTAAA
51018180 ATATATTTTAAATCTTCCTACTATTCGT
1 ATATATTTTAAATCTTCCTACTATTCGT
*
51018208 ATATATTTTAAATCTTCCTGCTATTCGT
1 ATATATTTTAAATCTTCCTACTATTCGT
51018236 ATAT
1 ATAT
51018240 GACCTTATCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.28, C:0.17, G:0.05, T:0.50
Consensus pattern (28 bp):
ATATATTTTAAATCTTCCTACTATTCGT
Found at i:51019663 original size:26 final size:28
Alignment explanation
Indices: 51019634--51019689 Score: 73
Period size: 26 Copynumber: 2.1 Consensus size: 28
51019624 TAAGATTATT
*
51019634 TAAAAT-AATAGATAAA-AAGTTCAAAA
1 TAAAATAAATAGAAAAAGAAGTTCAAAA
*
51019660 T-AAATAAATAGAAAAAGAAGTTTAAAA
1 TAAAATAAATAGAAAAAGAAGTTCAAAA
51019687 TAA
1 TAA
51019690 TACACAACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
25 4 0.16
26 10 0.40
27 10 0.40
28 1 0.04
ACGTcount: A:0.66, C:0.02, G:0.09, T:0.23
Consensus pattern (28 bp):
TAAAATAAATAGAAAAAGAAGTTCAAAA
Found at i:51019691 original size:26 final size:26
Alignment explanation
Indices: 51019636--51019689 Score: 74
Period size: 27 Copynumber: 2.1 Consensus size: 26
51019626 AGATTATTTA
*
51019636 AAAT-AATAGATAAAAAGTTCAAAAT
1 AAATAAATAGAAAAAAAGTTCAAAAT
*
51019661 AAATAAATAGAAAAAGAAGTTTAAAAT
1 AAATAAATAGAAAAA-AAGTTCAAAAT
51019688 AA
1 AA
51019690 TACACAACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 4 0.16
26 9 0.36
27 12 0.48
ACGTcount: A:0.67, C:0.02, G:0.09, T:0.22
Consensus pattern (26 bp):
AAATAAATAGAAAAAAAGTTCAAAAT
Found at i:51019799 original size:17 final size:17
Alignment explanation
Indices: 51019777--51019813 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
51019767 ATTTATACAG
**
51019777 TAATTTAAATTAAATAA
1 TAATTTAAAACAAATAA
51019794 TAATTTAAAACAAATAA
1 TAATTTAAAACAAATAA
51019811 TAA
1 TAA
51019814 AATGGAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (17 bp):
TAATTTAAAACAAATAA
Found at i:51021638 original size:44 final size:44
Alignment explanation
Indices: 51021584--51021895 Score: 189
Period size: 44 Copynumber: 6.8 Consensus size: 44
51021574 AATTTGCTAC
* *
51021584 CTTCAGTCTACTCCACTGCAACTTCAGGGATATAAGACTTGTGG
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTGG
* * * **
51021628 CTTCAATCTACCCCACTGCAACTTCAGGGGGATAAGATTTGTAT
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTGG
* * * *
51021672 CTTCAACCTGCTCCACTGCAACTTCAGTGAGATAAGGC-TGTTGG
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTG-TGG
* * * * ** *
51021716 CTTCAATTTGCTCCACTACAACTTTAGAAAGATAAGATCTTCCATAATTTGTAG
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGA-----C-----TTGTGG
* * * * *
51021770 ATTTAATCTATTCCACTGCAATCTTCAGGGAGACAAGA-TTCGCTGT
1 CTTCAATCTACTCCACTGCAA-CTTCAGGGAGATAAGACTT-G-TGG
* * * * *
51021816 CTTCAGTCTGCTCCGCTGCAACTTCAGGAAGATAAG-GTTGGTGG
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTT-GTGG
* * *
51021860 CTTCAATCTGCACCACTGCAACTTCAGGAAGATAAG
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAG
51021896 GTCCACCATA
Statistics
Matches: 203, Mismatches: 49, Indels: 32
0.71 0.17 0.11
Matches are distributed among these distances:
43 2 0.01
44 136 0.67
45 17 0.08
46 16 0.08
49 1 0.00
54 17 0.08
55 14 0.07
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.29
Consensus pattern (44 bp):
CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTGG
Found at i:51021738 original size:88 final size:89
Alignment explanation
Indices: 51021538--51021739 Score: 221
Period size: 88 Copynumber: 2.3 Consensus size: 89
51021528 GTGATTTATT
* * * **
51021538 GCTTCAATTTGTTCCACTACAATTTCATGGAAATGAAATTTGCTACCTTCAGTCTACTCCACTGC
1 GCTTCAATTTGCTCCACTACAACTTCAGGGAAATGAAATTTGCTACCTTCAACCTACTCCACTGC
*
51021603 AACTTCAGGGATATAAGACTTGTG
66 AACTTCAGGGAGATAAGACTTGTG
* * * * ** * *
51021627 GCTTCAATCTACCCCACTGCAACTTCAGGGGGAT-AAGATTTG-TATCTTCAACCTGCTCCACTG
1 GCTTCAATTTGCTCCACTACAACTTCAGGGAAATGAA-ATTTGCTACCTTCAACCTACTCCACTG
* *
51021690 CAACTTCAGTGAGATAAGGC-TGTTG
65 CAACTTCAGGGAGATAAGACTTG-TG
51021715 GCTTCAATTTGCTCCACTACAACTT
1 GCTTCAATTTGCTCCACTACAACTT
51021740 TAGAAAGATA
Statistics
Matches: 91, Mismatches: 20, Indels: 5
0.78 0.17 0.04
Matches are distributed among these distances:
87 2 0.02
88 59 0.65
89 30 0.33
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (89 bp):
GCTTCAATTTGCTCCACTACAACTTCAGGGAAATGAAATTTGCTACCTTCAACCTACTCCACTGC
AACTTCAGGGAGATAAGACTTGTG
Found at i:51021841 original size:144 final size:144
Alignment explanation
Indices: 51021640--51022043 Score: 535
Period size: 144 Copynumber: 2.8 Consensus size: 144
51021630 TCAATCTACC
* * * ** *
51021640 CCACTGCAA-CTTCAGGGGGATAAGATTTG-TATCTTCAACCTGCTCCACTGCAACTTCAGTG-A
1 CCACTGCAATCTTCAGGGAGATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAG-GAA
* * * * **
51021702 GATAAGGCTGTTGGCTTCAATTTGCTCCACTACAACTTTAGAAAGATAAGATCTTCCATAATTTG
65 GATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGAAAGATAAGATCCACCATAATTTG
51021767 TAGATTTAATCTATT
130 TAGATTTAATCTATT
*
51021782 CCACTGCAATCTTCAGGGAGACAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGAAG
1 CCACTGCAATCTTCAGGGAGATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGAAG
* * * *
51021847 ATAAGGTTGGTGGCTTCAATCTGCACCACTGCAACTTCAGGAAGATAAGGTCCACCATAATTTGT
66 ATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGAAAGATAAGATCCACCATAATTTGT
* * *
51021912 AGCTTTAATTTGTT
131 AGATTTAATCTATT
* * * * *
51021926 CCACTGCAATCTTCGGGGAAATAAGATTCACTGTCTTCAGTCTGCTCCGCTGTAACTTCAGGTAG
1 CCACTGCAATCTTCAGGGAGATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGAAG
* *
51021991 ATAAGGCTGGTGGCTTCAATCTGCTCCACTGTAACTTCAGAAGGATAAGATCC
66 ATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGAAAGATAAGATCC
51022044 GCGATAATGA
Statistics
Matches: 227, Mismatches: 32, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
142 9 0.04
143 18 0.08
144 200 0.88
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (144 bp):
CCACTGCAATCTTCAGGGAGATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGAAG
ATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGAAAGATAAGATCCACCATAATTTGT
AGATTTAATCTATT
Found at i:51034005 original size:45 final size:45
Alignment explanation
Indices: 51033903--51034154 Score: 409
Period size: 45 Copynumber: 5.6 Consensus size: 45
51033893 TTTGAGTACT
*
51033903 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTAAGGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTA-GCTACACTTA
*
51033949 TCTGATTAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTA
*
51033994 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTA
*
51034039 TCTGATTAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-TTAGCTACACTTA
* *
51034085 TTTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTA
*
51034130 TCTGATC-AGGGAC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
51034155 ATCATACGTA
Statistics
Matches: 194, Mismatches: 11, Indels: 5
0.92 0.05 0.02
Matches are distributed among these distances:
43 12 0.06
44 5 0.03
45 102 0.53
46 75 0.39
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (45 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTA
Found at i:51034076 original size:91 final size:90
Alignment explanation
Indices: 51033903--51034154 Score: 429
Period size: 91 Copynumber: 2.8 Consensus size: 90
51033893 TTTGAGTACT
51033903 TCTGATCAAGTGACAAAGTGATAAGTGGTAG-CTAAGGCTACACTTATCTGATTAAGTGACAAAG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCT-A-GCTACACTTATCTGATTAAGTGACAAAG
51033967 TGATAAGTGGTAGCTTAGCTACACTTA
64 TGATAAGTGGTAGCTTAGCTACACTTA
51033994 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTGATTAAGTGACAAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTGATTAAGTGACAAAGTG
51034059 ATAAGTGGTAGCTTTAGCTACACTTA
66 ATAAGTGGTAGC-TTAGCTACACTTA
* * *
51034085 TTTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTGA-TCAGGGAC-AAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTGATTAAGTGACAAAGTG
51034148 ATAAGTG
66 ATAAGTG
51034155 ATCATACGTA
Statistics
Matches: 156, Mismatches: 3, Indels: 6
0.95 0.02 0.04
Matches are distributed among these distances:
89 12 0.08
90 48 0.31
91 94 0.60
92 2 0.01
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (90 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTGATTAAGTGACAAAGTG
ATAAGTGGTAGCTTAGCTACACTTA
Found at i:51034104 original size:136 final size:134
Alignment explanation
Indices: 51033903--51034154 Score: 416
Period size: 136 Copynumber: 1.9 Consensus size: 134
51033893 TTTGAGTACT
*
51033903 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTAAGGCTACACTTATCTGATTAAGTGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTAAGGCTACACTTATCTGATCAAGTGACAAAGT
* *
51033968 GATAAGTGGTAGCTTAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTA
66 GATAAGTGGTAGCCTAGCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTGGTAGCCTAGCTA
51034033 CACTTA
129 CACTTA
* * *
51034039 TCTGATTAAGTGACAAAGTGATAAGTGGTAGCTTTA-GCTACACTTATTTGATCAAGTGACAAAG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-TAAGGCTACACTTATCTGATCAAGTGACAAAG
51034103 TGATAAGTGGTAGCCTAGCTACACTTATCTGATCAGGGACAAGTGATAAGTG
65 TGATAAGTGGTAGCCTAGCTACACTTATCTGATCAGGGACAAGTGATAAGTG
51034155 ATCATACGTA
Statistics
Matches: 109, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
134 12 0.11
135 5 0.05
136 90 0.83
137 2 0.02
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (134 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTAAGGCTACACTTATCTGATCAAGTGACAAAGT
GATAAGTGGTAGCCTAGCTACACTTATCTGATCAGGGACAAGTGATAAGTGGTAGCCTAGCTACA
CTTA
Found at i:51035392 original size:17 final size:17
Alignment explanation
Indices: 51035370--51035408 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
51035360 GAGTTTATAC
**
51035370 AATAATTTAAATTAAAT
1 AATAATTTAAAACAAAT
51035387 AATAATTTAAAACAAAT
1 AATAATTTAAAACAAAT
51035404 AATAA
1 AATAA
51035409 AATGGAACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (17 bp):
AATAATTTAAAACAAAT
Found at i:51036803 original size:14 final size:15
Alignment explanation
Indices: 51036774--51036806 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
51036764 ACTTGAACTC
*
51036774 TTTTATTTGTTTTGG
1 TTTTATTTGATTTGG
51036789 TTTTATTT-ATTTGG
1 TTTTATTTGATTTGG
51036803 TTTT
1 TTTT
51036807 GGGCCCGGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.09, C:0.00, G:0.15, T:0.76
Consensus pattern (15 bp):
TTTTATTTGATTTGG
Found at i:51038415 original size:24 final size:24
Alignment explanation
Indices: 51038369--51038415 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
51038359 GACAGCCATG
*
51038369 GAAGAAAGGGAAAAGAGAGAAAAA
1 GAAGAAAGGGAAAAGAAAGAAAAA
* * *
51038393 GAAGAGAGGGTAAAGAAATAAAA
1 GAAGAAAGGGAAAAGAAAGAAAA
51038416 TAAAAAGAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.32, T:0.04
Consensus pattern (24 bp):
GAAGAAAGGGAAAAGAAAGAAAAA
Found at i:51039097 original size:22 final size:22
Alignment explanation
Indices: 51039068--51039114 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
51039058 AAAAGTTATC
51039068 TACAAATCAAATC-TCTAATAT
1 TACAAATCAAATCTTCTAATAT
* *
51039089 TACAGAATCATATCTTTTAATAT
1 TACA-AATCAAATCTTCTAATAT
51039112 TAC
1 TAC
51039115 GTTCCATATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 4 0.18
22 8 0.36
23 10 0.45
ACGTcount: A:0.43, C:0.17, G:0.02, T:0.38
Consensus pattern (22 bp):
TACAAATCAAATCTTCTAATAT
Found at i:51042055 original size:41 final size:41
Alignment explanation
Indices: 51041998--51042220 Score: 347
Period size: 41 Copynumber: 5.4 Consensus size: 41
51041988 AGTTTTAAAA
* *
51041998 CCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGTTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
*
51042039 CCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
*
51042080 CCTAGCAGGTTAAGTGCCGGTGATCTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* * *
51042121 CCTAGCAGGCTAAGTGCCGGTGAACTGGATTAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* *
51042162 CCTAGCAGGCTAAGTGCTGGTGATCTGAATCAGGCTTTAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* *
51042203 CCTAACAAGCTAAGTGCC
1 CCTAGCAGGCTAAGTGCC
51042221 AGCGAATCTG
Statistics
Matches: 165, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 165 1.00
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (41 bp):
CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
Found at i:51043008 original size:12 final size:12
Alignment explanation
Indices: 51042993--51043020 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
51042983 CTGTTCTTTT
51042993 TTTATTTTTCCA
1 TTTATTTTTCCA
51043005 TTTATTTTTCCA
1 TTTATTTTTCCA
51043017 TTTA
1 TTTA
51043021 AAATAAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.18, C:0.14, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTATTTTTCCA
Found at i:51050131 original size:22 final size:23
Alignment explanation
Indices: 51050075--51050122 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
51050065 TAAAAGCTAT
*
51050075 TTACA-AATCAAATC-TCTAAGA
1 TTACATAATCATATCTTCTAAGA
51050096 TTACATAATCATATCTTCTAAGA
1 TTACATAATCATATCTTCTAAGA
51050119 TTAC
1 TTAC
51050123 GTTTCATATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 5 0.21
22 8 0.33
23 11 0.46
ACGTcount: A:0.42, C:0.19, G:0.04, T:0.35
Consensus pattern (23 bp):
TTACATAATCATATCTTCTAAGA
Found at i:51051169 original size:22 final size:22
Alignment explanation
Indices: 51051104--51051172 Score: 93
Period size: 22 Copynumber: 3.1 Consensus size: 22
51051094 TATGCACTAT
* *
51051104 TAAACAGAGAGCACTAAAGTGA
1 TAAACAGAGAGCACTAATGTGC
* *
51051126 TATACAGAGAGCACAAATGTGC
1 TAAACAGAGAGCACTAATGTGC
*
51051148 TAAACGGAGAGCACTAATGTGC
1 TAAACAGAGAGCACTAATGTGC
51051170 TAA
1 TAA
51051173 TAATCGGAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.43, C:0.16, G:0.23, T:0.17
Consensus pattern (22 bp):
TAAACAGAGAGCACTAATGTGC
Found at i:51054244 original size:14 final size:16
Alignment explanation
Indices: 51054209--51054247 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
51054199 AAAGTATACA
51054209 TATATATACATACTTT
1 TATATATACATACTTT
**
51054225 TATATATACATGTTTT
1 TATATATACATACTTT
51054241 TATATAT
1 TATATAT
51054248 TTCCATAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.36, C:0.08, G:0.03, T:0.54
Consensus pattern (16 bp):
TATATATACATACTTT
Found at i:51055487 original size:25 final size:25
Alignment explanation
Indices: 51055439--51055489 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
51055429 AAAATTTATG
51055439 TATAAAACAACTAAAAATAGAATCA
1 TATAAAACAACTAAAAATAGAATCA
* *
51055464 TATATAAATAACTTAAAATA-AATCA
1 TATA-AAACAACTAAAAATAGAATCA
51055489 T
1 T
51055490 TAGCAAAGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.61, C:0.10, G:0.02, T:0.27
Consensus pattern (25 bp):
TATAAAACAACTAAAAATAGAATCA
Found at i:51055653 original size:40 final size:40
Alignment explanation
Indices: 51055591--51055680 Score: 112
Period size: 42 Copynumber: 2.2 Consensus size: 40
51055581 TTGAAATAAC
*
51055591 ATATAAAAAAATAATTTCAACTAAATAA-TATATATACAT
1 ATATAAAAAAATAATTTAAACTAAATAATTATATATACAT
*
51055630 ATATAAAAAAA-ACCATTTAAACTAAATAATTTGTATATACAT
1 ATATAAAAAAATA--ATTTAAACTAAATAA-TTATATATACAT
*
51055672 ATATTAAAA
1 ATATAAAAA
51055681 TAGGTGCTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
38 1 0.02
39 11 0.25
40 14 0.32
42 18 0.41
ACGTcount: A:0.58, C:0.08, G:0.01, T:0.33
Consensus pattern (40 bp):
ATATAAAAAAATAATTTAAACTAAATAATTATATATACAT
Found at i:51062619 original size:30 final size:30
Alignment explanation
Indices: 51062585--51062647 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
51062575 ATTTAACAAG
51062585 CAAATACCTCTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
*** *
51062615 CAAATGTTTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
51062645 CAA
1 CAA
51062648 TAAAATAAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.59, C:0.13, G:0.02, T:0.27
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:51067037 original size:24 final size:24
Alignment explanation
Indices: 51067009--51067062 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
51066999 TAATGTTTAT
*
51067009 ATTTTTTGTT-AATTTGATTCTTA
1 ATTTTTAGTTAAATTTGATTCTTA
* *
51067032 TTTTTTAGTTAAATTTGATTTTTA
1 ATTTTTAGTTAAATTTGATTCTTA
*
51067056 ACTTTTA
1 ATTTTTA
51067063 AAAAAAAATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 8 0.32
24 17 0.68
ACGTcount: A:0.24, C:0.04, G:0.07, T:0.65
Consensus pattern (24 bp):
ATTTTTAGTTAAATTTGATTCTTA
Found at i:51067042 original size:23 final size:23
Alignment explanation
Indices: 51067008--51067051 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
51066998 TTAATGTTTA
51067008 TATTTTTTGTT-AATTTGATTCT
1 TATTTTTTGTTAAATTTGATTCT
51067030 TATTTTTTAGTTAAATTTGATT
1 TATTTTTT-GTTAAATTTGATT
51067052 TTTAACTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 8 0.40
23 3 0.15
24 9 0.45
ACGTcount: A:0.23, C:0.02, G:0.09, T:0.66
Consensus pattern (23 bp):
TATTTTTTGTTAAATTTGATTCT
Found at i:51074440 original size:18 final size:19
Alignment explanation
Indices: 51074383--51074442 Score: 79
Period size: 18 Copynumber: 3.2 Consensus size: 19
51074373 CGAATATAAA
*
51074383 TTTAAAAAT-TAAATTTCT
1 TTTAAAAATATAAATTTAT
*
51074401 TTTAAGAAATATAAATTAAT
1 TTTAA-AAATATAAATTTAT
51074421 TTTAAAAATAT-AATTTAT
1 TTTAAAAATATAAATTTAT
51074439 TTTA
1 TTTA
51074443 CAAGTTCAGA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
18 15 0.41
19 10 0.27
20 12 0.32
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (19 bp):
TTTAAAAATATAAATTTAT
Found at i:51075569 original size:17 final size:17
Alignment explanation
Indices: 51075547--51075588 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
51075537 GTTTGTATGA
51075547 TTATTTTTCAAAT-TTAT
1 TTATTTTT-AAATATTAT
*
51075564 TTATTTTTAAATATTTT
1 TTATTTTTAAATATTAT
51075581 TTATTTTT
1 TTATTTTT
51075589 TTGAATTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 4 0.17
17 19 0.83
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.71
Consensus pattern (17 bp):
TTATTTTTAAATATTAT
Found at i:51079216 original size:17 final size:17
Alignment explanation
Indices: 51079180--51079228 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 17
51079170 TATAAAATAA
*
51079180 AAAATAGTAGAAATTGT
1 AAAATAGTAAAAATTGT
* * *
51079197 AAATTATTAAAAATTTT
1 AAAATAGTAAAAATTGT
51079214 AAAATAGTAAAAATT
1 AAAATAGTAAAAATT
51079229 ATCGTTTCTT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.57, C:0.00, G:0.08, T:0.35
Consensus pattern (17 bp):
AAAATAGTAAAAATTGT
Found at i:51080514 original size:19 final size:17
Alignment explanation
Indices: 51080466--51080517 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 17
51080456 AATTTTATGC
51080466 TTTTCTATTTTTAATAT
1 TTTTCTATTTTTAATAT
*
51080483 TTTTGTTATTTTTTAATAT
1 TTTT-CTA-TTTTTAATAT
51080502 ATATTTCTATTTTTAA
1 -T-TTTCTATTTTTAA
51080518 AAATTTTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
17 4 0.14
18 2 0.07
19 17 0.59
20 3 0.10
21 3 0.10
ACGTcount: A:0.25, C:0.04, G:0.02, T:0.69
Consensus pattern (17 bp):
TTTTCTATTTTTAATAT
Found at i:51081240 original size:25 final size:25
Alignment explanation
Indices: 51081212--51081265 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
51081202 ATATTAAAAA
* *
51081212 TAAAAAAATTAAATTTTAATAATTT
1 TAAAAAAATTAAATATAAATAATTT
*
51081237 TAAAATAATTAAATATAAATAATTT
1 TAAAAAAATTAAATATAAATAATTT
51081262 TAAA
1 TAAA
51081266 TTGAAGCAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (25 bp):
TAAAAAAATTAAATATAAATAATTT
Found at i:51081756 original size:18 final size:19
Alignment explanation
Indices: 51081733--51081772 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
51081723 CATTTTGAAC
*
51081733 TTTAAAATAATAT-TAAAA
1 TTTAAAACAATATATAAAA
51081751 TTTAAAACAATATATAAAA
1 TTTAAAACAATATATAAAA
51081770 TTT
1 TTT
51081773 TAGCATTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (19 bp):
TTTAAAACAATATATAAAA
Found at i:51081917 original size:11 final size:11
Alignment explanation
Indices: 51081874--51081919 Score: 56
Period size: 11 Copynumber: 4.0 Consensus size: 11
51081864 TCAAACAAAG
51081874 TTAAAATTTTA
1 TTAAAATTTTA
* *
51081885 TTTAAATTATAA
1 TTAAAATT-TTA
51081897 TTAAATATTTTA
1 TTAAA-ATTTTA
51081909 TTAAAATTTTA
1 TTAAAATTTTA
51081920 CTTTCAAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
11 13 0.45
12 13 0.45
13 3 0.10
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (11 bp):
TTAAAATTTTA
Found at i:51089793 original size:44 final size:44
Alignment explanation
Indices: 51089667--51089779 Score: 154
Period size: 44 Copynumber: 2.6 Consensus size: 44
51089657 GTTTTAATTC
* * * *
51089667 ACTCCATTGCAACTTCAAGGAGATAGGATTGGTTTCTTCTATCT
1 ACTCCACTGCAACTTCAGGGAGATAGGATTAGTTTCTTCTATCA
* * *
51089711 GCTCCACTGCAACTTTAGGGAGATAGGATTATTTTCTTCTATCA
1 ACTCCACTGCAACTTCAGGGAGATAGGATTAGTTTCTTCTATCA
*
51089755 ATTCCACTGCAACTTCAGGGAGATA
1 ACTCCACTGCAACTTCAGGGAGATA
51089780 AGACTTGTAT
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 59 1.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.34
Consensus pattern (44 bp):
ACTCCACTGCAACTTCAGGGAGATAGGATTAGTTTCTTCTATCA
Found at i:51089807 original size:44 final size:44
Alignment explanation
Indices: 51089674--51089848 Score: 133
Period size: 44 Copynumber: 4.0 Consensus size: 44
51089664 TTCACTCCAT
* * * * * *
51089674 TGCAACTTCAAGGAGATAGGATTGGTTTCTTCTATCTGCTCCAC
1 TGCAACTTCAGGGAGATAAGATTAGTATCTTCTATCTACTTCAC
* * * * *
51089718 TGCAACTTTAGGGAGATAGGATTATTTTCTTCTATC-AATTCCAC
1 TGCAACTTCAGGGAGATAAGATTAGTATCTTCTATCTACTT-CAC
*
51089762 TGCAACTTCAGGGAGATAAGACTT-GTATCTTCAATCTACTTCAC
1 TGCAACTTCAGGGAGATAAGA-TTAGTATCTTCTATCTACTTCAC
* * * *
51089806 TGCCAA-TACAGGAAGACAAGATCT-GTTATCTTCGATCTACTTC
1 TG-CAACTTCAGGGAGATAAGAT-TAG-TATCTTCTATCTACTTC
51089849 GCCACTAATA
Statistics
Matches: 108, Mismatches: 17, Indels: 11
0.79 0.12 0.08
Matches are distributed among these distances:
43 2 0.02
44 82 0.76
45 24 0.22
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (44 bp):
TGCAACTTCAGGGAGATAAGATTAGTATCTTCTATCTACTTCAC
Found at i:51090386 original size:399 final size:400
Alignment explanation
Indices: 51089795--51090763 Score: 1270
Period size: 399 Copynumber: 2.4 Consensus size: 400
51089785 TGTATCTTCA
* * *
51089795 ATCTACTTCACTGCCAATACAGGAAGACAAGATCTGTTATCTTCGATCTACTTCGCCACTAATAT
1 ATCTACTTCAC-GCCAGTACAGGAAGACAAGATCTGTTATCTTCGATCTACTTCACCACTAGTAT
* * * * *
51089860 GGGAATACAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTACTTTC
65 GGGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAGTATATGAAGACAAGATCTACTTTC
* * *
51089925 TTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAG
130 TTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCCATCTTTGATCTACTTCACGCCAA
51089990 TACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACCACCAGTATGGGGAGACAAGATCTGT
195 TACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACCACCAGTATGGGGAGACAAGATCTGT
* * *
51090055 TGTCTTTGATCTACCTCACGCC-AGTACATGAAGACAAGATCTACTTTTTTCGATCTACTTCACC
260 TGTCTTTAATCTACCTCACGCCTA-TACATGAAGACAAGATCTACTATCTTCGATCTACTTCACC
* * * * * *
51090119 ACTAGTATGGGGAGACAAGATCTG-TATATTCGATCCACTTCGCTACCAATATAGGAAGACATGA
324 ACCAATATGGGAAGACAAGATCTGCTATATTCGATCCACTTC-ATACCAATACAGGAAGACAAGA
51090183 TCTG-CTTCTTTG
388 TCTGTCTTCTTTG
* * *
51090195 ATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCACCACCAGTATG
1 ATCTACTTCACGCCAGTACAGGAAGACAAGATCTGTTATCTTCGATCTACTTCACCACTAGTATG
* *
51090260 GGAAGACAATATCTACTTTCTTCGATCTACTTCACGCCAGTATATGAAGACAAGATCTACTTT-T
66 GGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAGTATATGAAGACAAGATCTACTTTCT
* * *
51090324 TCTGATCTACTTCACCACCAGTATTGGAAGATAAGATCTGCCATCTTTTATCTACTTCACGCCAA
131 TC-GATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCCATCTTTGATCTACTTCACGCCAA
51090389 TACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACCACCAGTATGGGGAGACAAGATCTGT
195 TACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACCACCAGTATGGGGAGACAAGATCTGT
* * *
51090454 TGTCTTTAATCTACTTCACGCCTATACATGAAGACAAGATCTGCTATCTTCGATCTACTTCGCCA
260 TGTCTTTAATCTACCTCACGCCTATACATGAAGACAAGATCTACTATCTTCGATCTACTTCACCA
* * ** * * *
51090519 CCAATATGGGAAGACAAGATCTGCTATCTTTGATTTACTTCATGCCAGTACATGAAGACAAGATC
325 CCAATATGGGAAGACAAGATCTGCTATATTCGATCCACTTCATACCAATACAGGAAGACAAGATC
*
51090584 TGTTTTCTTTG
390 TGTCTTCTTTG
* * ** * ** * *
51090595 ATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGGTATCTTTAATCTACTTCA-CGCTAGTAC
1 ATCTACTTC-ACGCCAGTACAGGAAGACAAGATCTGTTATCTTCGATCTACTTCACCACTAGTAT
** * * **
51090659 ATGAAGACAAGATCTGTTTTCTTCGATCTACTT--CGCCACTAGTATGGGAAGACAAGATCTGGT
65 GGGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAGTA-TAT--GAAGACAAGATCTACT
* * * ***
51090722 ATCTTTGATCTACTTCA-CGCCAGTACATGAAGACAAGATCTG
127 TTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTG
51090764 TTTTCTTCGA
Statistics
Matches: 494, Mismatches: 66, Indels: 18
0.85 0.11 0.03
Matches are distributed among these distances:
398 10 0.02
399 325 0.66
400 95 0.19
401 62 0.13
402 2 0.00
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (400 bp):
ATCTACTTCACGCCAGTACAGGAAGACAAGATCTGTTATCTTCGATCTACTTCACCACTAGTATG
GGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAGTATATGAAGACAAGATCTACTTTCT
TCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCCATCTTTGATCTACTTCACGCCAAT
ACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACCACCAGTATGGGGAGACAAGATCTGTT
GTCTTTAATCTACCTCACGCCTATACATGAAGACAAGATCTACTATCTTCGATCTACTTCACCAC
CAATATGGGAAGACAAGATCTGCTATATTCGATCCACTTCATACCAATACAGGAAGACAAGATCT
GTCTTCTTTG
Found at i:51090916 original size:89 final size:89
Alignment explanation
Indices: 51089816--51090949 Score: 1210
Period size: 89 Copynumber: 12.8 Consensus size: 89
51089806 TGCCAATACA
* * * * * * *
51089816 GGAAGACAAGATCTGTTATCTTCGATCTACTT--CGCCACTAATATGGGAATACAAGATCTGGTA
1 GGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGT-ACAT--GAAGACAAGATCTGTTT
* * * **
51089879 TCTTTGATCTACTTC-ACGCCAGTACA
63 TCTTCGATCTACTTCGCCACCAGTATG
* * * * * * *** * *
51089905 TGAAGACAAGATCTACTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATC
1 GGAAGACAAGATCTGCTATCTTTGATCTACTTC-ACGCCAGTACATGAAGACAAGATCTGTTTTC
* * * **
51089970 TTTGATCTACTTC-ACGCCAGTACA
65 TTCGATCTACTTCGCCACCAGTATG
* * * * * *** * *
51089994 TGAAGACAAGATCTGCTTTCTTCGATCTACTCCACCACCAGTATGGGGAGACAAGATCTGTTGTC
1 GGAAGACAAGATCTGCTATCTTTGATCTACTTCA-CGCCAGTACATGAAGACAAGATCTGTTTTC
* * * * **
51090059 TTTGATCTACCTC-ACGCCAGTACA
65 TTCGATCTACTTCGCCACCAGTATG
* * * *** * *
51090083 TGAAGACAAGATCTACT-TTTTTCGATCTACTTCAC-CACTAGTATGGGGAGACAAGATCTG-TA
1 GGAAGACAAGATCTGCTATCTTT-GATCTACTTCACGC-C-AGTACATGAAGACAAGATCTGTTT
* * * * *
51090145 TATTCGATCCACTTCGCTACCAATATA
63 TCTTCGATCTACTTCGCCACCAGTATG
*
51090172 GGAAGACATGATCTGCT-TCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCT
1 GGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCT
*
51090236 TCGATCTACTTCACCACCAGTATG
66 TCGATCTACTTCGCCACCAGTATG
* * * * * **
51090260 GGAAGACAATATCTACTTTCTTCGATCTACTTCACGCCAGTATATGAAGACAAGATCTACTTT-T
1 GGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCT
* *
51090324 TCTGATCTACTTCACCACCAGTATT
66 TC-GATCTACTTCGCCACCAGTATG
* * * * *
51090349 GGAAGATAAGATCTGCCATCTTTTATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCT
1 GGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCT
* *
51090414 TCGATCTACTCCACCACCAGTATG
66 TCGATCTACTTCGCCACCAGTATG
* * * * * *
51090438 GGGAGACAAGATCTGTTGTCTTTAATCTACTTCACGCCTA-TACATGAAGACAAGATCTGCTATC
1 GGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCC-AGTACATGAAGACAAGATCTGTTTTC
*
51090502 TTCGATCTACTTCGCCACCAATATG
65 TTCGATCTACTTCGCCACCAGTATG
* *
51090527 GGAAGACAAGATCTGCTATCTTTGATTTACTTCATGCCAGTACATGAAGACAAGATCTGTTTTCT
1 GGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCT
*
51090592 TTGATCTACTTCGCCACCAGTATG
66 TCGATCTACTTCGCCACCAGTATG
* * *
51090616 GGAAGACAAGATCTGGTATCTTTAATCTACTTCACGCTAGTACATGAAGACAAGATCTGTTTTCT
1 GGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCT
*
51090681 TCGATCTACTTCGCCACTAGTATG
66 TCGATCTACTTCGCCACCAGTATG
*
51090705 GGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCT
1 GGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCT
*
51090770 TCGATCTACTTTGCCACCAGTATG
66 TCGATCTACTTCGCCACCAGTATG
* *
51090794 GGAAGACAAGATCTGGTATCTTTGATCTACTTCACGTCAGTACATGAAGACAAGATCTGTTTTCT
1 GGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCT
* *
51090859 TCGATCTACTTTGCCATCAGTATG
66 TCGATCTACTTCGCCACCAGTATG
* * * *
51090883 GGAAGACAAGATCTGGTATCTTTAATCTACTTCACGCCAGTACATGAAGATAAGATCTATTTTCT
1 GGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCT
51090948 TC
66 TC
51090950 CTAGCCTACT
Statistics
Matches: 927, Mismatches: 103, Indels: 30
0.87 0.10 0.03
Matches are distributed among these distances:
87 18 0.02
88 70 0.08
89 828 0.89
90 4 0.00
91 2 0.00
92 5 0.01
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.31
Consensus pattern (89 bp):
GGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCT
TCGATCTACTTCGCCACCAGTATG
Found at i:51092246 original size:14 final size:13
Alignment explanation
Indices: 51092213--51092252 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
51092203 TTAGCCTCTC
51092213 CATTTTT-ACTTTT
1 CATTTTTCA-TTTT
51092226 CATTTTTCATTTT
1 CATTTTTCATTTT
51092239 CATCTTTTCATTTT
1 CAT-TTTTCATTTT
51092253 TTCACATCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 14 0.56
14 11 0.44
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.68
Consensus pattern (13 bp):
CATTTTTCATTTT
Found at i:51092247 original size:21 final size:20
Alignment explanation
Indices: 51092213--51092253 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
51092203 TTAGCCTCTC
*
51092213 CATTTTTACTTTTCATTTTT
1 CATTTTCACTTTTCATTTTT
51092233 CATTTTCATCTTTTCATTTTT
1 CATTTTCA-CTTTTCATTTTT
51092254 TCACATCACT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.68
Consensus pattern (20 bp):
CATTTTCACTTTTCATTTTT
Found at i:51092256 original size:8 final size:7
Alignment explanation
Indices: 51092213--51092253 Score: 50
Period size: 6 Copynumber: 6.0 Consensus size: 7
51092203 TTAGCCTCTC
51092213 CATTTTT
1 CATTTTT
*
51092220 -ACTTTT
1 CATTTTT
51092226 CATTTTT
1 CATTTTT
51092233 CA-TTTT
1 CATTTTT
51092239 CATCTTTT
1 CAT-TTTT
51092247 CATTTTT
1 CATTTTT
51092254 TCACATCACT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
6 11 0.38
7 11 0.38
8 7 0.24
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.68
Consensus pattern (7 bp):
CATTTTT
Found at i:51093531 original size:9 final size:9
Alignment explanation
Indices: 51093515--51093551 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
51093505 TATAGTTTGA
51093515 TATTCGAAT
1 TATTCGAAT
*
51093524 TGTTCGAAT
1 TATTCGAAT
*
51093533 TATTCGAGT
1 TATTCGAAT
51093542 TATTCGAAT
1 TATTCGAAT
51093551 T
1 T
51093552 CGAAAACTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.27, C:0.11, G:0.16, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:51096402 original size:19 final size:19
Alignment explanation
Indices: 51096362--51096406 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
51096352 ACCGCTTTTT
* *
51096362 ATGCATATGATGTAATGTA
1 ATGCAAATGATGAAATGTA
51096381 ATGCAAATGCATGAAATG-A
1 ATGCAAATG-ATGAAATGTA
51096400 ATGCAAA
1 ATGCAAA
51096407 AAGAGACGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.44, C:0.09, G:0.20, T:0.27
Consensus pattern (19 bp):
ATGCAAATGATGAAATGTA
Found at i:51100794 original size:107 final size:107
Alignment explanation
Indices: 51100612--51100919 Score: 351
Period size: 107 Copynumber: 2.9 Consensus size: 107
51100602 TCTGTACTAG
* * **
51100612 GGAAATAAGGTTCGTCAAGGAAGTAAGATTCGTTGTTGTAGCTTCAATCTGTTCCACTGCAATGC
1 GGAAATAAGGTTCGTCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* ** ** * *
51100677 CAGGGCAGTAAGATTTACCGTTGTAACTTCAATCTGTGCAAT
66 TAGGAAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTGCAAT
*
51100719 GGAAATAAGGTTCGTCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCAC
1 GGAAATAAGGTTCGTCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * ** *
51100784 TAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAGT
66 TAGGAAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTGCAAT
* * * * * *
51100826 CGCAAT---G-TCG---GGGAAGCAAGATCCACTGTTGTAGCTTCAACCTGTTCCACTGCACCGC
1 GGAAATAAGGTTCGTCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGC
*
51100884 TAGAAAAGTAAGATTCGCTGTTGTAGCTTCAATCTG
66 TAGGAAAGTAAGATTCGCTGTTGTAGCTTCAATCTG
51100920 CAATATCAGG
Statistics
Matches: 174, Mismatches: 27, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
100 76 0.44
103 3 0.02
104 1 0.01
107 94 0.54
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (107 bp):
GGAAATAAGGTTCGTCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGC
TAGGAAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTGCAAT
Found at i:51100814 original size:50 final size:50
Alignment explanation
Indices: 51100739--51101010 Score: 269
Period size: 50 Copynumber: 5.6 Consensus size: 50
51100729 TTCGTCAGGG
*
51100739 AAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCACTAGGA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCACTAGGA
** * * * *
51100789 AAGTAAGATCCGCTGTTGTAGCTTCAATCT-TTTTAGTCGCA--ATGTCGGGG
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACT-GCACCA-CT-AGGA
* * * * *
51100839 AAGCAAGATCCACTGTTGTAGCTTCAACCTGTTCCACTGCACCGCTAGAA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCACTAGGA
* * * *
51100889 AAGTAAGATTCGCTGTTGTAGCTTCAATCTG---CAAT--A--TC-AGGG
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCACTAGGA
* *
51100931 AAGCAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCTAGGA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCACTAGGA
*
51100981 AAGTAAGATCCGTTGTTGTAGCTTCAATCT
1 AAGTAAGATCCGCTGTTGTAGCTTCAATCT
51101011 TTTTAACTGC
Statistics
Matches: 175, Mismatches: 33, Indels: 28
0.74 0.14 0.12
Matches are distributed among these distances:
42 31 0.18
43 1 0.01
45 4 0.02
47 4 0.02
48 1 0.01
49 6 0.03
50 123 0.70
51 5 0.03
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.30
Consensus pattern (50 bp):
AAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCACTAGGA
Found at i:51100953 original size:92 final size:92
Alignment explanation
Indices: 51100827--51101010 Score: 305
Period size: 92 Copynumber: 2.0 Consensus size: 92
51100817 CTTTTTAGTC
* *
51100827 GCAATGTCGGGGAAGCAAGATCCACTGTTGTAGCTTCAACCTGTTCCACTGCACCGCTAGAAAAG
1 GCAATATCAGGGAAGCAAGATCCACTGTTGTAGCTTCAACCTGTTCCACTGCACCGCTAGAAAAG
*
51100892 TAAGATTCGCTGTTGTAGCTTCAATCT
66 TAAGATCCGCTGTTGTAGCTTCAATCT
* * *
51100919 GCAATATCAGGGAAGCAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCTAGGAAAG
1 GCAATATCAGGGAAGCAAGATCCACTGTTGTAGCTTCAACCTGTTCCACTGCACCGCTAGAAAAG
*
51100984 TAAGATCCGTTGTTGTAGCTTCAATCT
66 TAAGATCCGCTGTTGTAGCTTCAATCT
51101011 TTTTAACTGC
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
92 85 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (92 bp):
GCAATATCAGGGAAGCAAGATCCACTGTTGTAGCTTCAACCTGTTCCACTGCACCGCTAGAAAAG
TAAGATCCGCTGTTGTAGCTTCAATCT
Found at i:51112863 original size:37 final size:37
Alignment explanation
Indices: 51112794--51112865 Score: 90
Period size: 37 Copynumber: 1.9 Consensus size: 37
51112784 ATATAAGTTA
* *
51112794 TAAAATATAAAAATATATACGTATGTATATATATAAG
1 TAAAATATAAAAATATATACGTATATAAATATATAAG
* * * *
51112831 TAAATTATGAAAATATGTACGTGTATAAATATATA
1 TAAAATATAAAAATATATACGTATATAAATATATA
51112866 TTATAGAAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 29 1.00
ACGTcount: A:0.51, C:0.03, G:0.10, T:0.36
Consensus pattern (37 bp):
TAAAATATAAAAATATATACGTATATAAATATATAAG
Found at i:51121590 original size:35 final size:34
Alignment explanation
Indices: 51121527--51121599 Score: 112
Period size: 35 Copynumber: 2.1 Consensus size: 34
51121517 AACAATTAAT
*
51121527 ACAATTAATAATTAATAATTTGATAATTTTACTA
1 ACAATTAATAATTAACAATTTGATAATTTTACTA
51121561 ACAATTAATATAATTAACAA-TTGATAATTTTACTA
1 ACAATT-A-ATAATTAACAATTTGATAATTTTACTA
51121596 ACAA
1 ACAA
51121600 AATGTTAGTA
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
34 6 0.17
35 20 0.56
36 10 0.28
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.40
Consensus pattern (34 bp):
ACAATTAATAATTAACAATTTGATAATTTTACTA
Found at i:51121597 original size:19 final size:19
Alignment explanation
Indices: 51121546--51121599 Score: 60
Period size: 16 Copynumber: 3.0 Consensus size: 19
51121536 AATTAATAAT
51121546 TTGATAATTTTACTAACAA
1 TTGATAATTTTACTAACAA
* * *
51121565 -T--TAATATAATTAACAA
1 TTGATAATTTTACTAACAA
51121581 TTGATAATTTTACTAACAA
1 TTGATAATTTTACTAACAA
51121600 AATGTTAGTA
Statistics
Matches: 26, Mismatches: 6, Indels: 6
0.68 0.16 0.16
Matches are distributed among these distances:
16 12 0.46
17 1 0.04
18 1 0.04
19 12 0.46
ACGTcount: A:0.46, C:0.09, G:0.04, T:0.41
Consensus pattern (19 bp):
TTGATAATTTTACTAACAA
Found at i:51121646 original size:93 final size:91
Alignment explanation
Indices: 51121511--51121700 Score: 294
Period size: 93 Copynumber: 2.1 Consensus size: 91
51121501 TGTTAGATTT
*
51121511 TGTTA-TAACAATTAATACAATTAATAATTAATAATTTGATAATTTTACTAACAATTAATATAAT
1 TGTTAGTAACAATTAATA-AATTAATAATTAATAATTTGATAATTTTACTAACAATTAATACAAT
*
51121575 TAACAATTGATAATTTTACTAACAAAA
65 TAACAATTAATAATTTTACTAACAAAA
* *
51121602 TGTTAGTAACAATTAAT-AATTAATAATTTGATATAATTTTATAATTTTAGTAACAATTAATACA
1 TGTTAGTAACAATTAATAAATTAATAA-TT-A-ATAATTTGATAATTTTACTAACAATTAATACA
51121666 ATTAACAATTAATAATTTTACTAACAAAA
63 ATTAACAATTAATAATTTTACTAACAAAA
51121695 TGTTAG
1 TGTTAG
51121701 ATTTTACAAA
Statistics
Matches: 91, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
90 9 0.10
91 7 0.08
92 12 0.13
93 63 0.69
ACGTcount: A:0.48, C:0.07, G:0.05, T:0.41
Consensus pattern (91 bp):
TGTTAGTAACAATTAATAAATTAATAATTAATAATTTGATAATTTTACTAACAATTAATACAATT
AACAATTAATAATTTTACTAACAAAA
Found at i:51121764 original size:16 final size:16
Alignment explanation
Indices: 51121745--51121801 Score: 96
Period size: 16 Copynumber: 3.6 Consensus size: 16
51121735 AATTTGATAC
51121745 AATTTTAATAACAATT
1 AATTTTAATAACAATT
*
51121761 AATTTTGATAACAATT
1 AATTTTAATAACAATT
51121777 AATTTTAATAACAATT
1 AATTTTAATAACAATT
*
51121793 AGTTTTAAT
1 AATTTTAAT
51121802 TTTAATAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.46
Consensus pattern (16 bp):
AATTTTAATAACAATT
Found at i:51121800 original size:22 final size:23
Alignment explanation
Indices: 51121775--51121836 Score: 81
Period size: 22 Copynumber: 2.7 Consensus size: 23
51121765 TTGATAACAA
* *
51121775 TTAATTTTAATAACAAT-TAGTT
1 TTAATTTTAATAAAAATATAATT
51121797 TTAATTTTAATAAAAATATAATT
1 TTAATTTTAATAAAAATATAATT
*
51121820 TTTATTTTAAATAAAAA
1 TTAATTTT-AATAAAAA
51121837 ACAGGCTGGG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
22 16 0.46
23 11 0.31
24 8 0.23
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (23 bp):
TTAATTTTAATAAAAATATAATT
Found at i:51122432 original size:28 final size:25
Alignment explanation
Indices: 51122389--51122459 Score: 74
Period size: 26 Copynumber: 2.8 Consensus size: 25
51122379 CATTTTTGCA
51122389 ATATATATACATATTTTTTATAATTT
1 ATATATATACATATTTTTTA-AATTT
*
51122415 ATATATATACGTCCATTTTTTAAA-TT
1 ATATATATACAT--ATTTTTTAAATTT
*
51122441 ATTATAAATACAT-TTTTTT
1 A-TATATATACATATTTTTT
51122460 GCATATTTCA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
24 6 0.15
26 14 0.36
27 11 0.28
28 8 0.21
ACGTcount: A:0.37, C:0.07, G:0.01, T:0.55
Consensus pattern (25 bp):
ATATATATACATATTTTTTAAATTT
Found at i:51124061 original size:17 final size:18
Alignment explanation
Indices: 51124036--51124077 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
51124026 CGACAATTAT
*
51124036 AAAATATTCAAAAAT-AA
1 AAAAAATTCAAAAATCAA
*
51124053 AAAAAATTCAAAATTCAA
1 AAAAAATTCAAAAATCAA
51124071 AAAAAAT
1 AAAAAAT
51124078 ATAATTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 13 0.59
18 9 0.41
ACGTcount: A:0.71, C:0.07, G:0.00, T:0.21
Consensus pattern (18 bp):
AAAAAATTCAAAAATCAA
Found at i:51126115 original size:25 final size:24
Alignment explanation
Indices: 51126071--51126158 Score: 70
Period size: 25 Copynumber: 3.5 Consensus size: 24
51126061 CGAGCATGTA
*
51126071 AACGAGAAGCTC-TTTCGAGCCATAT
1 AACGAGAAGCTCATGT-GAGCCA-AT
*
51126096 AACGAGAAGCTCATGTGAGCTAAGT
1 AACGAGAAGCTCATGTGAGCCAA-T
* * *
51126121 AACGGGAAGCTCTTGCGAGCCAAAT
1 AACGAGAAGCTCATGTGAGCC-AAT
* *
51126146 ATCAAGAAGCTCA
1 AACGAGAAGCTCA
51126159 AGAGAGCTGT
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
24 1 0.02
25 45 0.90
26 4 0.08
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (24 bp):
AACGAGAAGCTCATGTGAGCCAAT
Found at i:51126166 original size:50 final size:48
Alignment explanation
Indices: 51126062--51126218 Score: 145
Period size: 50 Copynumber: 3.1 Consensus size: 48
51126052 GTGCTCATAC
* * * * * * *
51126062 GAGCATGTAAACGAGAAGCTCTTTCGAGCCATATAACGAGAAGCTCATGT
1 GAGC-TGTTAACGGGAAGCTCTTGCGAGCCAAATATC-AGAAGCTCAAGA
51126112 GAGCTAAG-TAACGGGAAGCTCTTGCGAGCCAAATATCAAGAAGCTCAAGA
1 GAGCT--GTTAACGGGAAGCTCTTGCGAGCCAAATATC-AGAAGCTCAAGA
* * * *
51126162 GAGCTGTTAATCGGAAAGCTCATGAGAGCCAAGTATCAGAAAGCTCAAGA
1 GAGCTGTTAA-CGGGAAGCTCTTGCGAGCCAAATATCAG-AAGCTCAAGA
51126212 GAGCTGT
1 GAGCTGT
51126219 GGTGTGTTTG
Statistics
Matches: 90, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
48 1 0.01
49 6 0.07
50 82 0.91
51 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.26, T:0.19
Consensus pattern (48 bp):
GAGCTGTTAACGGGAAGCTCTTGCGAGCCAAATATCAGAAGCTCAAGA
Found at i:51126180 original size:25 final size:24
Alignment explanation
Indices: 51126152--51126218 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 24
51126142 AAATATCAAG
*
51126152 AAGCTCAAGAGAGCTGTTAATCGGA
1 AAGCTCAAGAGAGCTGTT-ATCAGA
* *
51126177 AAGCTCATGAGAGCCAAG-TATCAGA
1 AAGCTCAAGAGAG-C-TGTTATCAGA
51126202 AAGCTCAAGAGAGCTGT
1 AAGCTCAAGAGAGCTGT
51126219 GGTGTGTTTG
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
23 1 0.03
24 1 0.03
25 29 0.85
26 2 0.06
27 1 0.03
ACGTcount: A:0.37, C:0.18, G:0.27, T:0.18
Consensus pattern (24 bp):
AAGCTCAAGAGAGCTGTTATCAGA
Found at i:51128494 original size:11 final size:10
Alignment explanation
Indices: 51128477--51128514 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
51128467 AGAAATCCAA
51128477 AAAGAAACAG
1 AAAGAAACAG
51128487 AAACGAAACAG
1 AAA-GAAACAG
51128498 AAAGAAA-AGG
1 AAAGAAACA-G
51128508 AAAGAAA
1 AAAGAAA
51128515 AATATCTACC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 1 0.04
10 15 0.58
11 10 0.38
ACGTcount: A:0.71, C:0.08, G:0.21, T:0.00
Consensus pattern (10 bp):
AAAGAAACAG
Found at i:51133885 original size:73 final size:73
Alignment explanation
Indices: 51133759--51134003 Score: 348
Period size: 73 Copynumber: 3.4 Consensus size: 73
51133749 AAAATAAGCA
* * * * *
51133759 TTAGCGGCGTTTTTGAGAAAGCGCCGC-AAAAAACCTAAGCCTAACGACTCTGTTTCCCGAGCTT
1 TTAGCGGCGTTTCTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACACTGTTTTCTGAGCTT
*
51133823 TCAGGGAT
66 TCGGGGAT
* * * * * *
51133831 TTAACGGCGTTTCTGAGAAAGTGCCACAAAAAAACATAAGCCCAACGACGCTGTTTTGTGAGCTT
1 TTAGCGGCGTTTCTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACACTGTTTTCTGAGCTT
51133896 TCGGGGAT
66 TCGGGGAT
*
51133904 TTAGCGGCGTTTCTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACACGGTTTTCTGAGCTT
1 TTAGCGGCGTTTCTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACACTGTTTTCTGAGCTT
51133969 TCGGGGAT
66 TCGGGGAT
* *
51133977 TTAGCGGCGTTTTTAAGAAAGCGCCGC
1 TTAGCGGCGTTTCTGAGAAAGCGCCGC
51134004 TAATGCTCAG
Statistics
Matches: 152, Mismatches: 20, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
72 23 0.15
73 129 0.85
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.24
Consensus pattern (73 bp):
TTAGCGGCGTTTCTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACACTGTTTTCTGAGCTT
TCGGGGAT
Found at i:51134051 original size:114 final size:114
Alignment explanation
Indices: 51133903--51134277 Score: 597
Period size: 114 Copynumber: 3.3 Consensus size: 114
51133893 CTTTCGGGGA
* * * * *
51133903 TTTAGCGGCGTTTCTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACACGGTTTTCTGAGCT
1 TTTAGCGACGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
51133968 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
66 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
* * *
51134017 TTTCGCGACGTTTTTGGGAAAGCGCCACAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCT
1 TTTAGCGACGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
*
51134082 TTCGGGGATTTAGCGGCATTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
66 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
* * **
51134131 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACAACGCCGTTTTCTGAATT
1 TTTAGCGACGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
* * *
51134196 TTCGAGGATTTAGCGGTGTTTTTAAGAAAGCGCCGCTAATGCTCAGCGC
66 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
*
51134245 TTTAACGACGTTTTTGGGAAAGCGCCGCAAAAA
1 TTTAGCGACGTTTTTGGGAAAGCGCCGCAAAAA
51134278 GTATTTTATC
Statistics
Matches: 239, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
114 239 1.00
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (114 bp):
TTTAGCGACGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
Found at i:51134883 original size:29 final size:29
Alignment explanation
Indices: 51134854--51134936 Score: 100
Period size: 29 Copynumber: 2.9 Consensus size: 29
51134844 GGATTATGGT
51134854 TTAAGGGTT-GGGATTTAAGGTTTAGGGG
1 TTAAGGGTTAGGGATTTAAGGTTTAGGGG
* *
51134882 TTAAGGGTTTAGGG-TTT-AGATGTTAGTGG
1 TTAAGGG-TTAGGGATTTAAGGT-TTAGGGG
*
51134911 TTAAGAGTTAGGGATTTAAGGTTTAG
1 TTAAGGGTTAGGGATTTAAGGTTTAG
51134937 AGATTCAGGG
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
28 16 0.35
29 24 0.52
30 6 0.13
ACGTcount: A:0.24, C:0.00, G:0.37, T:0.39
Consensus pattern (29 bp):
TTAAGGGTTAGGGATTTAAGGTTTAGGGG
Found at i:51134892 original size:15 final size:14
Alignment explanation
Indices: 51134868--51134936 Score: 52
Period size: 15 Copynumber: 4.8 Consensus size: 14
51134858 GGGTTGGGAT
51134868 TTAAGGTTTAGGGG
1 TTAAGGTTTAGGGG
51134882 TTAAGGGTTTA-GGG
1 TTAA-GGTTTAGGGG
* * *
51134896 TTTAGATGTTAGTGG
1 TTAAGGT-TTAGGGG
*
51134911 TTAAGAG-TTAGGGAT
1 TTAAG-GTTTAGGG-G
51134926 TTAAGGTTTAG
1 TTAAGGTTTAG
51134937 AGATTCAGGG
Statistics
Matches: 42, Mismatches: 7, Indels: 11
0.70 0.12 0.18
Matches are distributed among these distances:
13 2 0.05
14 19 0.45
15 21 0.50
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (14 bp):
TTAAGGTTTAGGGG
Found at i:51135792 original size:243 final size:244
Alignment explanation
Indices: 51135502--51136066 Score: 866
Period size: 254 Copynumber: 2.3 Consensus size: 244
51135492 TTATTATAAA
*
51135502 AAATCAATTTAT-AAAAAACAAAATAAAAAAATTTTAGCATAGCAAAACGGCGTCATTTTGTTCA
1 AAATCAATTTATAAAAAAATAAAATAAAAAAATTTTAGCATAGCAAAACGGCGTCATTTTGTTCA
* *
51135566 AAATGAAATA-AAGGCGTTTTTGATATAAACGCCGCAAAAAATAAATCAATTAATAAAAACCAAA
66 AAATGAAATATAACGCGTTTTTGATAAAAACGCCGCAAAAAATAAATCAATTAATAAAAACCAAA
* ** *
51135630 ATAGCAAAACGGTGTCATTTTGTTCAAAATGAAAACTTTTTTGTGGCGTTTTTATTAAAAACGCC
131 ATAGCAAAACGGCGTCATTTTGTTCAAAATGAAAAAATTTTTGTGGCGTTTTTATGAAAAACGCC
* *
51135695 TCTAAAGATAAGCAATAGCGGCG-TTTTTATAAAAAGCGCCGCAAAAAAT
196 GCAAAAGATAAGCAATAGCGGCGTTTTTTATAAAAA-CGCCGCAAAAAAT
*
51135744 AAATCAATTTATAAAAAAATAAAATAAAAAATTTTTAGCATAGCAAAACGGCGTCATTTTGTTCA
1 AAATCAATTTATAAAAAAATAAAATAAAAAAATTTTAGCATAGCAAAACGGCGTCATTTTGTTCA
* * *
51135809 AAATGAAATAGCGGCGTTTTTATCGCGTTTTTGATAAAAACGCCGCAAATAATAAATCAATTATT
66 AAATGAAATA----------TAACGCGTTTTTGATAAAAACGCCGCAAAAAATAAATCAATTAAT
51135874 AAAAACCAAAATAGCAAAACGGCGTCATTTTGTTCAAAATGAAAAAATTTTTGTGGCGTTTTTAT
121 AAAAACCAAAATAGCAAAACGGCGTCATTTTGTTCAAAATGAAAAAATTTTTGTGGCGTTTTTAT
51135939 GAAAAACGCCGCAAAAGATAAGCAATAGCGGCGTTTTTTATAAAAACGCCGCAAAAAAT
186 GAAAAACGCCGCAAAAGATAAGCAATAGCGGCGTTTTTTATAAAAACGCCGCAAAAAAT
* * *
51135998 AAAACAATTTATAAAAAAATAAAATAAAAAAATTTTAACATAGCAAAACGGTGTCATTTTGTTCA
1 AAATCAATTTATAAAAAAATAAAATAAAAAAATTTTAGCATAGCAAAACGGCGTCATTTTGTTCA
51136063 AAAT
66 AAAT
51136067 AATATAGGAA
Statistics
Matches: 293, Mismatches: 17, Indels: 14
0.90 0.05 0.04
Matches are distributed among these distances:
242 12 0.04
243 60 0.20
254 209 0.71
255 12 0.04
ACGTcount: A:0.45, C:0.13, G:0.13, T:0.28
Consensus pattern (244 bp):
AAATCAATTTATAAAAAAATAAAATAAAAAAATTTTAGCATAGCAAAACGGCGTCATTTTGTTCA
AAATGAAATATAACGCGTTTTTGATAAAAACGCCGCAAAAAATAAATCAATTAATAAAAACCAAA
ATAGCAAAACGGCGTCATTTTGTTCAAAATGAAAAAATTTTTGTGGCGTTTTTATGAAAAACGCC
GCAAAAGATAAGCAATAGCGGCGTTTTTTATAAAAACGCCGCAAAAAAT
Found at i:51138645 original size:95 final size:94
Alignment explanation
Indices: 51138476--51138664 Score: 297
Period size: 95 Copynumber: 2.0 Consensus size: 94
51138466 TTAGCCTGAG
51138476 TGCTTCCTCTTTCATTGCCTCTACGCGCTTCCCTTTTTGTTTTTGAAGTTCTAGAGCTGGCAATA
1 TGCTTCCTCTTTCATTGCCTCTACGCGCTTCCCTTTTTGTTTTTGAAGTTCTAGAGCTGGCAATA
* *
51138541 CCATTCTTGCAGTAGGTACCTTTTTCTCA
66 CCATTCTTGCAGCACGTACCTTTTTCTCA
** * **
51138570 TGCTTCCTCTTTCATTGCCTCTGTGCGCTTCCCTTTTTTGTTTTTGAAGTTCTAGAGTTGGTGAT
1 TGCTTCCTCTTTCATTGCCTCTACGCGCTTCCC-TTTTTGTTTTTGAAGTTCTAGAGCTGGCAAT
*
51138635 ACCATTCTTGCAGCACGTACTTTTTTCTCA
65 ACCATTCTTGCAGCACGTACCTTTTTCTCA
51138665 ATTATTATAA
Statistics
Matches: 86, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
94 31 0.36
95 55 0.64
ACGTcount: A:0.14, C:0.25, G:0.16, T:0.44
Consensus pattern (94 bp):
TGCTTCCTCTTTCATTGCCTCTACGCGCTTCCCTTTTTGTTTTTGAAGTTCTAGAGCTGGCAATA
CCATTCTTGCAGCACGTACCTTTTTCTCA
Found at i:51140126 original size:43 final size:43
Alignment explanation
Indices: 51140054--51140230 Score: 207
Period size: 43 Copynumber: 4.2 Consensus size: 43
51140044 GATAAGTGTT
* *
51140054 GCTAAAGG-CTTGTTCTATAGCGGCGTTTGTGGAAAAATCGCC
1 GCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGAAAAAGCGCC
* ** * * *
51140096 GCTAAAGGTCTTGAGCTATAGCGGTATTTGTGGGAAAGGCGCT
1 GCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGAAAAAGCGCC
* *
51140139 GCTAAAGGCCTTGATCTATAGCGGCGTTTGT-GCAAAAGCGCC
1 GCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGAAAAAGCGCC
* *
51140181 GCTAAAGGTCCTGATCTATAGCGGCGTTTGTGGGAGAAA-CGCC
1 GCTAAAGGTCTTGATCTATAGCGGCGTTTGT-GGAAAAAGCGCC
*
51140224 GCAAAAG
1 GCTAAAG
51140231 TTTGCAGCGT
Statistics
Matches: 112, Mismatches: 20, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
42 45 0.40
43 63 0.56
44 4 0.04
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (43 bp):
GCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGAAAAAGCGCC
Found at i:51140200 original size:85 final size:85
Alignment explanation
Indices: 51140053--51140215 Score: 247
Period size: 85 Copynumber: 1.9 Consensus size: 85
51140043 TGATAAGTGT
* * *
51140053 TGCTAAAGGCTTGTTCTATAGCGGCGTTTGTGGAAAAATCGCCGCTAAAGGTCTTGAGCTATAGC
1 TGCTAAAGGCTTGATCTATAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCCTGAGCTATAGC
*
51140118 GGTATTTGTGGGAAAGGCGC
66 GGCATTTGTGGGAAAGGCGC
* *
51140138 TGCTAAAGGCCTTGATCTATAGCGGCGTTTGT-GCAAAAGCGCCGCTAAAGGTCCTGATCTATAG
1 TGCTAAAGG-CTTGATCTATAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCCTGAGCTATAG
*
51140202 CGGCGTTTGTGGGA
65 CGGCATTTGTGGGA
51140216 GAAACGCCGC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
85 49 0.70
86 21 0.30
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (85 bp):
TGCTAAAGGCTTGATCTATAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCCTGAGCTATAGC
GGCATTTGTGGGAAAGGCGC
Found at i:51149925 original size:41 final size:41
Alignment explanation
Indices: 51149868--51149973 Score: 185
Period size: 41 Copynumber: 2.6 Consensus size: 41
51149858 AATGAGATAA
* *
51149868 TTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAATGT
1 TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
51149909 TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
1 TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
*
51149950 TTCGGACTTTACGTCTAGCAGGCT
1 TTCAGACTTTACGTCTAGCAGGCT
51149974 AATTGCCAGT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 62 1.00
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (41 bp):
TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
Found at i:51152386 original size:25 final size:25
Alignment explanation
Indices: 51152349--51152585 Score: 217
Period size: 25 Copynumber: 9.5 Consensus size: 25
51152339 AGTAAATACA
*
51152349 AATTCTCTAGAAAGCCTTTGTGGCG
1 AATTCTCTGGAAAGCCTTTGTGGCG
* * ***
51152374 AATTCTATGGAAAACCTTTGTGATA
1 AATTCTCTGGAAAGCCTTTGTGGCG
* * * * **
51152399 AATT-TTTTGAAGAACCTTTAT-AAG
1 AATTCTCTGGAA-AGCCTTTGTGGCG
* *
51152423 AATTCTCTGAAAAGCCTTTGTGACG
1 AATTCTCTGGAAAGCCTTTGTGGCG
*
51152448 AATTCTCTGGAAAGCCTTTGTGGCA
1 AATTCTCTGGAAAGCCTTTGTGGCG
* *
51152473 AATCCTCTGGAAATCCTTTGTGGCG
1 AATTCTCTGGAAAGCCTTTGTGGCG
* * *
51152498 AATTCTTTAGAAAGCCTTTGTGGTG
1 AATTCTCTGGAAAGCCTTTGTGGCG
* * *
51152523 AATTCTTTGGAAAGCTTTTGTGGTG
1 AATTCTCTGGAAAGCCTTTGTGGCG
* * *
51152548 AATTCTTTGGAAAACTTTTGTGGCG
1 AATTCTCTGGAAAGCCTTTGTGGCG
51152573 AATTCTCTGGAAA
1 AATTCTCTGGAAA
51152586 ATGCGTAGAG
Statistics
Matches: 176, Mismatches: 33, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
24 17 0.10
25 159 0.90
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (25 bp):
AATTCTCTGGAAAGCCTTTGTGGCG
Found at i:51152527 original size:75 final size:74
Alignment explanation
Indices: 51152349--51152585 Score: 253
Period size: 75 Copynumber: 3.2 Consensus size: 74
51152339 AGTAAATACA
* * * *
51152349 AATTCTCTAGAAAGCCTTTGTGGCGAATTCTATGGAAAACCTTTGTGATAAATTTTTTGAAGAAC
1 AATTCTCTAGAAAGCCTTTGTGGCGAATTCTATGGAAAGCCTTTGTGGTAAATCTTTGGAA-AAC
* **
51152414 CTTTAT-AAG
65 CTTTGTGGCG
* * * * *
51152423 AATTCTCT-GAAAAGCCTTTGTGACGAATTCTCTGGAAAGCCTTTGTGGCAAATCCTCTGGAAAT
1 AATTCTCTAG-AAAGCCTTTGTGGCGAATTCTATGGAAAGCCTTTGTGGTAAAT-CTTTGGAAAA
51152487 CCTTTGTGGCG
64 CCTTTGTGGCG
* * * * *
51152498 AATTCTTTAGAAAGCCTTTGTGGTGAATTCTTTGGAAAGCTTTTGTGGTGAATTCTTTGGAAAAC
1 AATTCTCTAGAAAGCCTTTGTGGCGAATTCTATGGAAAGCCTTTGTGGT-AAATCTTTGGAAAAC
*
51152563 TTTTGTGGCG
65 CTTTGTGGCG
*
51152573 AATTCTCTGGAAA
1 AATTCTCTAGAAA
51152586 ATGCGTAGAG
Statistics
Matches: 134, Mismatches: 24, Indels: 9
0.80 0.14 0.05
Matches are distributed among these distances:
73 1 0.01
74 53 0.40
75 76 0.57
76 4 0.03
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (74 bp):
AATTCTCTAGAAAGCCTTTGTGGCGAATTCTATGGAAAGCCTTTGTGGTAAATCTTTGGAAAACC
TTTGTGGCG
Found at i:51161311 original size:124 final size:126
Alignment explanation
Indices: 51160861--51161334 Score: 826
Period size: 126 Copynumber: 3.8 Consensus size: 126
51160851 TAATTTCGAG
* * *
51160861 TTGACGTTTCTGATCAAATAGTATAAAATTGCTTCTAACAGGATGCTATTTGAGAAGAATTTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
*
51160926 AAATCACGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACGGAAGAAATAATTATTTTT
66 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACGGAAGAAATAATTATTTTT
* *
51160987 TTGACATTTCTGAGCAAATAGTGTAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
* * *
51161052 AAATCGCGGCCTCATGGACGCGCTTTTGCTACAGTAGGTCACGGAATAAATAATTATTTTT
66 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACGGAAGAAATAATTATTTTT
51161113 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
* *
51161178 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCAAGTAAGAAATAA-T-TTTTT
66 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACGGAAGAAATAATTATTTTT
51161237 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
*
51161302 AAATTGCGCCCTCGTGGACGCGCTTTTGCTACA
66 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACA
51161335 ATAGCATGTT
Statistics
Matches: 331, Mismatches: 17, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
124 102 0.31
125 1 0.00
126 228 0.69
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.32
Consensus pattern (126 bp):
TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACGGAAGAAATAATTATTTTT
Found at i:51163896 original size:21 final size:21
Alignment explanation
Indices: 51163865--51163925 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
51163855 TAGGTTAGGG
*
51163865 TTAGGGTTTTTAAAATTAAGGT
1 TTAGGG-TTTTAAAATTAAAGT
* *
51163887 TTAGGGTTTTTAAGTTAAAGT
1 TTAGGGTTTTAAAATTAAAGT
*
51163908 TTAGGGTTTT-TAATTAAA
1 TTAGGGTTTTAAAATTAAA
51163926 TTAGGTTAGT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
20 6 0.18
21 22 0.65
22 6 0.18
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48
Consensus pattern (21 bp):
TTAGGGTTTTAAAATTAAAGT
Found at i:51163941 original size:29 final size:29
Alignment explanation
Indices: 51163908--51164021 Score: 219
Period size: 29 Copynumber: 3.9 Consensus size: 29
51163898 AAGTTAAAGT
51163908 TTAGGGTTTTTAATTAAATTAGGTTAGTG
1 TTAGGGTTTTTAATTAAATTAGGTTAGTG
*
51163937 TTAGGGTTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGTG
51163966 TTAGGGTTTTTAATTAAATTAGGTTAGTG
1 TTAGGGTTTTTAATTAAATTAGGTTAGTG
51163995 TTAGGGTTTTTAATTAAATTAGGTTAG
1 TTAGGGTTTTTAATTAAATTAGGTTAG
51164022 GGTTTTGTAT
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 83 1.00
ACGTcount: A:0.28, C:0.00, G:0.25, T:0.47
Consensus pattern (29 bp):
TTAGGGTTTTTAATTAAATTAGGTTAGTG
Found at i:51164079 original size:97 final size:97
Alignment explanation
Indices: 51163966--51164149 Score: 332
Period size: 97 Copynumber: 1.9 Consensus size: 97
51163956 TAGGTTAGGG
* * *
51163966 TTAGGGTTTTTAATTAAATTAGGTTAGTGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTGTA
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGA
51164031 TTAAATTAGGTTAGGGTTTTTAAAGTTAAGGT
66 TTAAATTAGGTTAGGGTTTTTAAAGTTAAGGT
*
51164063 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGA
51164128 TTAAATTAGGTTAGGGTTTTTA
66 TTAAATTAGGTTAGGGTTTTTA
51164150 TTACATCAAA
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
97 83 1.00
ACGTcount: A:0.27, C:0.00, G:0.26, T:0.47
Consensus pattern (97 bp):
TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTAGGA
TTAAATTAGGTTAGGGTTTTTAAAGTTAAGGT
Found at i:51164173 original size:25 final size:25
Alignment explanation
Indices: 51164145--51164257 Score: 123
Period size: 25 Copynumber: 4.7 Consensus size: 25
51164135 AGGTTAGGGT
51164145 TTTTATTACATCAAATAAACTTCTA
1 TTTTATTACATCAAATAAACTTCTA
51164170 TTTTATTACATCAAAT-AA-TATC-A
1 TTTTATTACATCAAATAAACT-TCTA
** * *
51164193 --AAATAAC-TCGAAA-AAATTTCTA
1 TTTTATTACATC-AAATAAACTTCTA
51164215 TTTTATTACATCAAATAAACTTCTA
1 TTTTATTACATCAAATAAACTTCTA
51164240 TTTTATTACATCAAATAA
1 TTTTATTACATCAAATAA
51164258 TATTAAAATA
Statistics
Matches: 72, Mismatches: 7, Indels: 18
0.74 0.07 0.19
Matches are distributed among these distances:
20 2 0.03
21 11 0.15
22 2 0.03
23 2 0.03
24 11 0.15
25 44 0.61
ACGTcount: A:0.44, C:0.14, G:0.01, T:0.41
Consensus pattern (25 bp):
TTTTATTACATCAAATAAACTTCTA
Found at i:51164228 original size:70 final size:69
Alignment explanation
Indices: 51164145--51164301 Score: 278
Period size: 70 Copynumber: 2.3 Consensus size: 69
51164135 AGGTTAGGGT
51164145 TTTTATTACATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCGAAAAAAT
1 TTTTATTACATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTC-AAAAAAT
51164210 TTCTA
65 TTCTA
*
51164215 TTTTATTACATCAAATAAACTTCTATTTTATTACATCAAATAATATTAAAATAACTCAAAAAATT
1 TTTTATTACATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCAAAAAATT
51164280 TCTA
66 TCTA
* *
51164284 TTTTTTTACATAAAATAA
1 TTTTATTACATCAAATAA
51164302 TATCAAAATA
Statistics
Matches: 84, Mismatches: 3, Indels: 1
0.95 0.03 0.01
Matches are distributed among these distances:
69 28 0.33
70 56 0.67
ACGTcount: A:0.46, C:0.13, G:0.01, T:0.41
Consensus pattern (69 bp):
TTTTATTACATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCAAAAAATT
TCTA
Found at i:51164285 original size:44 final size:45
Alignment explanation
Indices: 51164225--51164311 Score: 131
Period size: 44 Copynumber: 2.0 Consensus size: 45
51164215 TTTTATTACA
* *
51164225 TCAAATAAACTTCTATTTTATTACATCAAATAATATTAAAATAAC
1 TCAAATAAACTTCTATTTTATTACATAAAATAATATCAAAATAAC
* *
51164270 TCAAA-AAATTTCTATTTTTTTACATAAAATAATATCAAAATA
1 TCAAATAAACTTCTATTTTATTACATAAAATAATATCAAAATA
51164312 TTCAAAATAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
44 33 0.87
45 5 0.13
ACGTcount: A:0.49, C:0.11, G:0.00, T:0.39
Consensus pattern (45 bp):
TCAAATAAACTTCTATTTTATTACATAAAATAATATCAAAATAAC
Found at i:51165430 original size:7 final size:7
Alignment explanation
Indices: 51165420--51165444 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
51165410 TTATATACAT
51165420 AATACTA
1 AATACTA
51165427 AATACTA
1 AATACTA
51165434 AATACTA
1 AATACTA
51165441 AATA
1 AATA
51165445 TCAATCGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:51166644 original size:22 final size:22
Alignment explanation
Indices: 51166619--51166675 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 22
51166609 AAATATGGAT
51166619 TTGAGAGAATTTTG-GAAGGAAA
1 TTGAGAGAATTTTGAG-AGGAAA
**
51166641 TTGAGAGAAAATTGAGAGGAAA
1 TTGAGAGAATTTTGAGAGGAAA
*
51166663 TATGAGAGGATTT
1 T-TGAGAGAATTT
51166676 GTTTGTGAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
22 19 0.68
23 9 0.32
ACGTcount: A:0.42, C:0.00, G:0.32, T:0.26
Consensus pattern (22 bp):
TTGAGAGAATTTTGAGAGGAAA
Found at i:51166668 original size:12 final size:11
Alignment explanation
Indices: 51166635--51166672 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
51166625 GAATTTTGGA
51166635 AGGAAATTGAG
1 AGGAAATTGAG
*
51166646 AGAAAATTGAG
1 AGGAAATTGAG
51166657 AGGAAATATGAG
1 AGGAAAT-TGAG
51166669 AGGA
1 AGGA
51166673 TTTGTTTGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
11 16 0.67
12 8 0.33
ACGTcount: A:0.50, C:0.00, G:0.34, T:0.16
Consensus pattern (11 bp):
AGGAAATTGAG
Found at i:51170149 original size:8 final size:9
Alignment explanation
Indices: 51170132--51170356 Score: 88
Period size: 9 Copynumber: 24.4 Consensus size: 9
51170122 AAAATTTTTA
51170132 AAAAATTAT
1 AAAAATTAT
51170141 AAAAA-TAT
1 AAAAATTAT
51170149 AAAATAATT-T
1 -AAA-AATTAT
* *
51170159 AAATATTAA
1 AAAAATTAT
*
51170168 AAAAATTAA
1 AAAAATTAT
51170177 AAAAATTA-
1 AAAAATTAT
** *
51170185 AATCGA-CAT
1 AA-AAATTAT
51170194 AAAAATTAT
1 AAAAATTAT
*
51170203 AAAAA-AAT
1 AAAAATTAT
* *
51170211 AAATATTGT
1 AAAAATTAT
*
51170220 AGAAA-TAT
1 AAAAATTAT
* *
51170228 AACAATTCT
1 AAAAATTAT
51170237 AATAAATTAT
1 AA-AAATTAT
51170247 -AAAATTAAT
1 AAAAATT-AT
*
51170256 AAAACATATTT
1 AAAA-AT-TAT
51170267 AAAATATT-T
1 AAAA-ATTAT
**
51170276 GAAATTTTAT
1 -AAAAATTAT
*
51170286 AAAAATTCTT
1 AAAAATT-AT
*
51170296 AAAAGCTTAT
1 AAAA-ATTAT
51170306 AAAAATTAT
1 AAAAATTAT
*
51170315 AAAAAATAT
1 AAAAATTAT
*
51170324 TAAAATTGAT
1 AAAAATT-AT
* *
51170334 ACAGATTTAT
1 A-AAAATTAT
51170344 AAAAATTAT
1 AAAAATTAT
51170353 AAAA
1 AAAA
51170357 GAACATAAAA
Statistics
Matches: 157, Mismatches: 39, Indels: 40
0.67 0.17 0.17
Matches are distributed among these distances:
8 26 0.17
9 83 0.53
10 31 0.20
11 16 0.10
12 1 0.01
ACGTcount: A:0.60, C:0.04, G:0.03, T:0.33
Consensus pattern (9 bp):
AAAAATTAT
Found at i:51170162 original size:16 final size:17
Alignment explanation
Indices: 51170131--51170174 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
51170121 TAAAATTTTT
*
51170131 AAAAAATTATAAAAATATA
1 AAAAAATT-TAAATAT-TA
*
51170150 AAATAATTTAAATATTA
1 AAAAAATTTAAATATTA
51170167 AAAAAATT
1 AAAAAATT
51170175 AAAAAAATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 9 0.41
18 6 0.27
19 7 0.32
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
AAAAAATTTAAATATTA
Found at i:51170319 original size:20 final size:20
Alignment explanation
Indices: 51170282--51170319 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
51170272 ATTTGAAATT
* *
51170282 TTATAAAAATTCTTAAAAGC
1 TTATAAAAATTATAAAAAGC
51170302 TTATAAAAATTATAAAAA
1 TTATAAAAATTATAAAAA
51170320 ATATTAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (20 bp):
TTATAAAAATTATAAAAAGC
Found at i:51170960 original size:29 final size:28
Alignment explanation
Indices: 51170927--51171158 Score: 92
Period size: 28 Copynumber: 8.2 Consensus size: 28
51170917 GGTTTAAATG
51170927 ATTTTTTTAATATTTTATATTTTATTAT-
1 ATTTTTTTAATATTTTATATTTT-TTATA
51170955 ATTTTTTATAACT-TTTTATGATTTTTTATA
1 ATTTTTT-TAA-TATTTTAT-ATTTTTTATA
* * *
51170985 AATTTTTTAA-AGTTTATATCTATTT-TA
1 ATTTTTTTAATATTTTATAT-TTTTTATA
* * *
51171012 ATATTCTTAA-ATATTTATA-TTTTTATG
1 ATTTTTTTAATAT-TTTATATTTTTTATA
* **
51171039 ATTTTTTT-ATAAGTTTTAAAGAAATTTTAT-
1 ATTTTTTTAAT-A-TTTT--ATATTTTTTATA
* * *
51171069 GTGTTTTTATAAAATTTTAAATATTTTTATA
1 AT-TTTTT-TAATATTTTATAT-TTTTTATA
* *
51171100 A-TTTATT-ATAATTTT-TGTTTTTTATA
1 ATTTTTTTAAT-ATTTTATATTTTTTATA
* * *
51171126 ATATTTATTAA-ATTTTTTAATTTTTATA
1 AT-TTTTTTAATATTTTATATTTTTTATA
51171154 ATTTT
1 ATTTT
51171159 ATATCCATTT
Statistics
Matches: 155, Mismatches: 25, Indels: 49
0.68 0.11 0.21
Matches are distributed among these distances:
26 14 0.09
27 29 0.19
28 49 0.32
29 24 0.15
30 21 0.14
31 15 0.10
32 2 0.01
33 1 0.01
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.63
Consensus pattern (28 bp):
ATTTTTTTAATATTTTATATTTTTTATA
Found at i:51170970 original size:11 final size:10
Alignment explanation
Indices: 51170927--51171206 Score: 81
Period size: 10 Copynumber: 29.5 Consensus size: 10
51170917 GGTTTAAATG
51170927 ATTTTTT-TA
1 ATTTTTTATA
*
51170936 ATATTTTAT-
1 ATTTTTTATA
51170945 ATTTTATTAT-
1 ATTTT-TTATA
51170955 ATTTTTTATA
1 ATTTTTTATA
* *
51170965 ACTTTTTATG
1 ATTTTTTATA
51170975 ATTTTTTATAA
1 ATTTTTTAT-A
51170986 ATTTTTTA-A
1 ATTTTTTATA
*
51170995 A--GTTTAT-
1 ATTTTTTATA
*
51171002 ATCTATTT-TA
1 AT-TTTTTATA
*
51171012 ATATTCTTA-A
1 AT-TTTTTATA
*
51171022 A-TATTTAT-
1 ATTTTTTATA
51171030 A-TTTTTATGA
1 ATTTTTTAT-A
*
51171040 TTTTTTTATA
1 ATTTTTTATA
* *
51171050 A-GTTTTAAA
1 ATTTTTTATA
**
51171059 GAAATTTTAT-
1 -ATTTTTTATA
*
51171069 GTGTTTTTATA
1 AT-TTTTTATA
**
51171080 AAATTTTA-A
1 ATTTTTTATA
51171089 ATATTTTTATA
1 AT-TTTTTATA
*
51171100 ATTTATTATA
1 ATTTTTTATA
51171110 A--TTTT-T-
1 ATTTTTTATA
*
51171116 GTTTTTTATA
1 ATTTTTTATA
51171126 ATATTTATTA-A
1 AT-TTT-TTATA
51171137 A-TTTTT-TA
1 ATTTTTTATA
51171145 A-TTTTTATA
1 ATTTTTTATA
* *
51171154 ATTTTATATCC
1 ATTTTTTAT-A
*
51171165 A-TTTTAATA
1 ATTTTTTATA
*
51171174 TTTTTTTA-A
1 ATTTTTTATA
*
51171183 ATATTTTATA
1 ATTTTTTATA
51171193 A-TTTTTATA
1 ATTTTTTATA
51171202 ATTTT
1 ATTTT
51171207 CTCTATGTTT
Statistics
Matches: 196, Mismatches: 42, Indels: 65
0.65 0.14 0.21
Matches are distributed among these distances:
7 6 0.03
8 27 0.14
9 47 0.24
10 84 0.43
11 29 0.15
12 3 0.02
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (10 bp):
ATTTTTTATA
Found at i:51170980 original size:20 final size:19
Alignment explanation
Indices: 51170930--51171236 Score: 72
Period size: 19 Copynumber: 16.3 Consensus size: 19
51170920 TTAAATGATT
* *
51170930 TTTTTA-ATATTTTAT-AT
1 TTTTTATATTTTTTATAAA
*
51170947 TTTATTATATTTTTTATAAC
1 TTT-TTATATTTTTTATAAA
51170967 TTTTTATGATTTTTTATAAA
1 TTTTTAT-ATTTTTTATAAA
*** **
51170987 TTTTT-TAAAGTTTATATC
1 TTTTTATATTTTTTATAAA
* *
51171005 TATTTTA-ATATTCT-TAAA
1 T-TTTTATATTTTTTATAAA
* **
51171023 TATTTATA-TTTTTATGATT
1 TTTTTATATTTTTTAT-AAA
** *
51171042 TTTTTATAAGTTTTAAAGAA
1 TTTTTATATTTTTTATA-AA
* *
51171062 ATTTTATGTGTTTTTATAAA
1 TTTTTATAT-TTTTTATAAA
* *
51171082 ATTTTAAATATTTTTAT-AA
1 TTTTTATAT-TTTTTATAAA
* *
51171101 TTTATTATAATTTTTGT---
1 TTT-TTATATTTTTTATAAA
* *
51171118 TTTTTATAATATTTATTAAA
1 TTTTTATATTTTTTA-TAAA
*
51171138 TTTTT-TAATTTTTAT-AA
1 TTTTTATATTTTTTATAAA
* **
51171155 -TTTTATATCCATTTTAATATT
1 TTTTTATAT---TTTTTATAAA
* *
51171176 TTTTTAAATATTTTAT-AA
1 TTTTTATATTTTTTATAAA
* *
51171194 TTTTTATAATTTTCTCT--A
1 TTTTTAT-ATTTTTTATAAA
*
51171212 TGTTTT-TATTATTTATAAA
1 T-TTTTATATTTTTTATAAA
51171231 TTTTTA
1 TTTTTA
51171237 AGATTTTTAT
Statistics
Matches: 208, Mismatches: 54, Indels: 54
0.66 0.17 0.17
Matches are distributed among these distances:
16 14 0.07
17 24 0.12
18 30 0.14
19 65 0.31
20 62 0.30
21 6 0.03
22 7 0.03
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (19 bp):
TTTTTATATTTTTTATAAA
Found at i:51171103 original size:9 final size:9
Alignment explanation
Indices: 51171072--51171246 Score: 101
Period size: 9 Copynumber: 18.8 Consensus size: 9
51171062 ATTTTATGTG
51171072 TTTTTATAAA
1 TTTTTAT-AA
* *
51171082 ATTTTAAATA
1 TTTTTATA-A
51171092 TTTTTATAA
1 TTTTTATAA
51171101 TTTATTATAA
1 TTT-TTATAA
*
51171111 TTTTTGT--
1 TTTTTATAA
51171118 TTTTTATAA
1 TTTTTATAA
*
51171127 TATTTATTAAA
1 TTTTTA-T-AA
51171138 TTTTT-TAA
1 TTTTTATAA
51171146 TTTTTATAA
1 TTTTTATAA
*
51171155 TTTTATATCCA
1 TTTT-TAT-AA
*
51171166 TTTTAAT-A
1 TTTTTATAA
*
51171174 TTTTTTTAAA
1 TTTTTAT-AA
51171184 TATTTTATAA
1 T-TTTTATAA
51171194 TTTTTATAA
1 TTTTTATAA
* *
51171203 TTTTCTCTATG
1 TTTT-TATA-A
*
51171214 TTTTTATTA
1 TTTTTATAA
*
51171223 TTTATA-AA
1 TTTTTATAA
51171231 TTTTTA-AGA
1 TTTTTATA-A
51171240 TTTTTAT
1 TTTTTAT
51171247 GGAAAAATAT
Statistics
Matches: 128, Mismatches: 21, Indels: 32
0.71 0.12 0.18
Matches are distributed among these distances:
7 6 0.05
8 20 0.16
9 45 0.35
10 37 0.29
11 20 0.16
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (9 bp):
TTTTTATAA
Found at i:51171113 original size:19 final size:18
Alignment explanation
Indices: 51170927--51171246 Score: 113
Period size: 20 Copynumber: 16.9 Consensus size: 18
51170917 GGTTTAAATG
*
51170927 ATTTTTTTAATATTTTATA
1 ATTTTTATAAT-TTTTATA
* *
51170946 TTTTATTATATTTTTTATA
1 ATTT-TTATAATTTTTATA
*
51170965 ACTTTTTATGATTTTTTATAA
1 A-TTTTTAT-AATTTTTAT-A
**
51170986 ATTTTT-TAAAGTTTAT-
1 ATTTTTATAATTTTTATA
51171002 ATCTATTT-TAATATTCTTA-A
1 AT-T-TTTATAAT-TT-TTATA
*
51171022 ATATTTAT-ATTTTTATGA
1 ATTTTTATAATTTTTAT-A
* * *
51171040 TTTTTTTATAAGTTTTAAAGA
1 -ATTTTTATAA-TTTT-TATA
* **
51171061 AATTTTATGTGTTTTTATAA
1 ATTTTTAT-AATTTTTAT-A
* *
51171081 AATTTTAAATATTTTTATA
1 ATTTTTATA-ATTTTTATA
*
51171100 ATTTATTATAATTTTTGT-
1 ATTT-TTATAATTTTTATA
*
51171118 -TTTTTATAATATTTATTAA
1 ATTTTTATAATTTTTA-T-A
51171137 ATTTTT-TAATTTTTATA
1 ATTTTTATAATTTTTATA
* *
51171154 ATTTTATATCCATTTTAAT-
1 ATTTT-TAT-AATTTTTATA
*
51171173 ATTTTTTTAAATATTTTATA
1 ATTTTTAT-AAT-TTTTATA
*
51171193 ATTTTTATAATTTTCTCTA
1 ATTTTTATAATTTT-TATA
* * *
51171212 TGTTTTTATTATTTATA-A
1 -ATTTTTATAATTTTTATA
51171230 ATTTTTA-AGATTTTTAT
1 ATTTTTATA-ATTTTTAT
51171247 GGAAAAATAT
Statistics
Matches: 224, Mismatches: 44, Indels: 67
0.67 0.13 0.20
Matches are distributed among these distances:
16 15 0.07
17 25 0.11
18 28 0.12
19 61 0.27
20 87 0.39
21 7 0.03
22 1 0.00
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (18 bp):
ATTTTTATAATTTTTATA
Found at i:51171129 original size:37 final size:34
Alignment explanation
Indices: 51171083--51171150 Score: 93
Period size: 37 Copynumber: 1.9 Consensus size: 34
51171073 TTTTATAAAA
51171083 TTTTAAATATTT-TTATAATTTATTATAATTTTTGTT
1 TTTTAAATATTTATTA-AATTT-TT-TAATTTTTGTT
51171119 TTTTATAATATTTATTAAATTTTTTAATTTTT
1 TTTTA-AATATTTATTAAATTTTTTAATTTTT
51171151 ATAATTTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
35 8 0.27
36 7 0.23
37 12 0.40
38 3 0.10
ACGTcount: A:0.31, C:0.00, G:0.01, T:0.68
Consensus pattern (34 bp):
TTTTAAATATTTATTAAATTTTTTAATTTTTGTT
Found at i:51171137 original size:48 final size:48
Alignment explanation
Indices: 51171061--51171206 Score: 155
Period size: 48 Copynumber: 3.1 Consensus size: 48
51171051 GTTTTAAAGA
* *
51171061 AATTTTATGTGTTTTTATAA-AATTTTAAATATTTTTATAATTTATTAT
1 AATTTTATGTCTTTTTATAATATTTTTAAATATTTTTATAATTT-TTAT
51171109 AATTTT-TGT-TTTTTATAATATTTATT-AA-ATTTTT-TAATTTTTAT
1 AATTTTATGTCTTTTTATAATATTT-TTAAATATTTTTATAATTTTTAT
* * *
51171153 AATTTTATATCCATTTTA-ATATTTTTTTAAATA-TTTTATAATTTTTAT
1 AATTTTATGT-CTTTTTATA-ATATTTTTAAATATTTTTATAATTTTTAT
51171201 AATTTT
1 AATTTT
51171207 CTCTATGTTT
Statistics
Matches: 85, Mismatches: 4, Indels: 18
0.79 0.04 0.17
Matches are distributed among these distances:
44 10 0.12
45 8 0.09
46 18 0.21
47 24 0.28
48 25 0.29
ACGTcount: A:0.33, C:0.01, G:0.02, T:0.64
Consensus pattern (48 bp):
AATTTTATGTCTTTTTATAATATTTTTAAATATTTTTATAATTTTTAT
Found at i:51171176 original size:28 final size:27
Alignment explanation
Indices: 51171073--51171206 Score: 89
Period size: 28 Copynumber: 4.9 Consensus size: 27
51171063 TTTTATGTGT
*
51171073 TTTTATAAAATTTTAAATATTTTTATAA
1 TTTTATATAATTTT-AATATTTTTATAA
**
51171101 -TTTATTATAATTTTTGT-TTTTTATAA
1 TTTTA-TATAATTTTAATATTTTTATAA
*
51171127 TATTTAT-TAAATTTT-TTAATTTTTATAA
1 T-TTTATAT-AATTTTAAT-ATTTTTATAA
* *
51171155 TTTTATATCCATTTTAATATTTTTTTAAA
1 TTTTATAT-AATTTTAATATTTTTAT-AA
* *
51171184 TATTT-TATAATTTTTATAATTTT
1 T-TTTATATAATTTTAATATTTTT
51171207 CTCTATGTTT
Statistics
Matches: 85, Mismatches: 11, Indels: 20
0.73 0.09 0.17
Matches are distributed among these distances:
26 11 0.13
27 17 0.20
28 47 0.55
29 7 0.08
30 3 0.04
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (27 bp):
TTTTATATAATTTTAATATTTTTATAA
Found at i:51177331 original size:3 final size:3
Alignment explanation
Indices: 51177323--51177352 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
51177313 TAGTCCCCAT
51177323 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
51177353 CTACTATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:51178577 original size:29 final size:30
Alignment explanation
Indices: 51178518--51178575 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
51178508 TCCGAGCCTT
*
51178518 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
51178548 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
51178576 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:51178805 original size:13 final size:13
Alignment explanation
Indices: 51178787--51178818 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
51178777 TTTCCAGCAA
51178787 TTATGAATTTATT
1 TTATGAATTTATT
51178800 TTATGAATTTATT
1 TTATGAATTTATT
*
51178813 TGATGA
1 TTATGA
51178819 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:51179026 original size:50 final size:50
Alignment explanation
Indices: 51178913--51179154 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
51178903 ATTTGGGTAA
* * *
51178913 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
51178969 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
51179019 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
51179069 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
51179119 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
51179155 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:51179102 original size:100 final size:103
Alignment explanation
Indices: 51178913--51179162 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
51178903 ATTTGGGTAA
51178913 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
51178978 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
51179019 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
51179081 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
51179119 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
51179163 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:51186164 original size:29 final size:30
Alignment explanation
Indices: 51186105--51186162 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
51186095 TCCGAGCCTT
*
51186105 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
51186135 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
51186163 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:51186392 original size:13 final size:13
Alignment explanation
Indices: 51186374--51186405 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
51186364 TTTCCAGCAA
51186374 TTATGAATTTATT
1 TTATGAATTTATT
51186387 TTATGAATTTATT
1 TTATGAATTTATT
*
51186400 TGATGA
1 TTATGA
51186406 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:51186613 original size:50 final size:50
Alignment explanation
Indices: 51186500--51186741 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
51186490 ATTTGGGTAA
* * *
51186500 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
51186556 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
51186606 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
51186656 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
51186706 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
51186742 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:51186689 original size:100 final size:103
Alignment explanation
Indices: 51186500--51186749 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
51186490 ATTTGGGTAA
51186500 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
51186565 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
51186606 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
51186668 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
51186706 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
51186750 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:51189676 original size:17 final size:17
Alignment explanation
Indices: 51189650--51189685 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
51189640 GTGTGTTTTG
*
51189650 TTTTGGCTGCATGACAT
1 TTTTGACTGCATGACAT
*
51189667 TTTTGACTGCATGGCAT
1 TTTTGACTGCATGACAT
51189684 TT
1 TT
51189686 CATCATAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.17, C:0.17, G:0.22, T:0.44
Consensus pattern (17 bp):
TTTTGACTGCATGACAT
Found at i:51190168 original size:19 final size:20
Alignment explanation
Indices: 51190131--51190170 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
51190121 TCTTTTCGCA
* *
51190131 TTCATTTCATGCATTTGCAT
1 TTCATTGCATGCATATGCAT
51190151 TTCATTGCAT-CATATGCAT
1 TTCATTGCATGCATATGCAT
51190170 T
1 T
51190171 AAACACAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.23, C:0.20, G:0.10, T:0.47
Consensus pattern (20 bp):
TTCATTGCATGCATATGCAT
Found at i:51192059 original size:20 final size:20
Alignment explanation
Indices: 51192034--51192074 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
51192024 GCAAATGTTC
51192034 TTTCATTCTTT-ACGATTTTT
1 TTTCATTCTTTCA-GATTTTT
51192054 TTTCATTCTTTCAGATTTTT
1 TTTCATTCTTTCAGATTTTT
51192074 T
1 T
51192075 CTGCCAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 19 0.95
21 1 0.05
ACGTcount: A:0.15, C:0.15, G:0.05, T:0.66
Consensus pattern (20 bp):
TTTCATTCTTTCAGATTTTT
Found at i:51193052 original size:7 final size:7
Alignment explanation
Indices: 51193026--51193064 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
51193016 AGTGATGTGG
51193026 AAAATGA
1 AAAATGA
*
51193033 ATAGATG-
1 A-AAATGA
51193040 AAAATGA
1 AAAATGA
51193047 AAAATGA
1 AAAATGA
51193054 AAAATGA
1 AAAATGA
51193061 AAAA
1 AAAA
51193065 GTAAAACCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
6 4 0.14
7 20 0.71
8 4 0.14
ACGTcount: A:0.69, C:0.00, G:0.15, T:0.15
Consensus pattern (7 bp):
AAAATGA
Found at i:51193070 original size:21 final size:21
Alignment explanation
Indices: 51193026--51193070 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
51193016 AGTGATGTGG
* *
51193026 AAAATGAATAGATGAAAATGA
1 AAAATGAATAAATGAAAAAGA
*
51193047 AAAATGAA-AAATGAAAAAGT
1 AAAATGAATAAATGAAAAAGA
51193067 AAAA
1 AAAA
51193071 CCGGAAAGGC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.69, C:0.00, G:0.16, T:0.16
Consensus pattern (21 bp):
AAAATGAATAAATGAAAAAGA
Found at i:51194400 original size:132 final size:132
Alignment explanation
Indices: 51194247--51194588 Score: 544
Period size: 132 Copynumber: 2.6 Consensus size: 132
51194237 GGAGCAAGTT
* *
51194247 GATGGCGGATTTTACCTCCCTGAGGTTACAGAGGAGTATATTGAAGCCAGTAATTCTATCTCCAT
1 GATGGCGGATTTTACCTCCCTGAGGTTACAGAGGAGTACATTGAAGCCAGTAATTCTATCTCCCT
*
51194312 GGGCAACAGTGGAATAGATTGAATATTACAGATCTTATCTCCCTAAAAAGTAGTGGAGCAAATC-
66 GGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAAAAGTAGTGGAGCAAATCG
51194376 AA
131 AA
* *
51194378 GGATGGCAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCC
1 -GATGGCGGATTTTACCTCCCTGAGGTTACAGAGGAGTACATTGAAGCCAGTAATTCTATCTCCC
* * ** *
51194443 TGGGTAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
65 TGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAAAAGTAGTGGAGCAAATC
51194508 GAA
130 GAA
*
51194511 GATGGCGGATTTTACCTCCCTGAGGTTACA-ATGAAGTACATTGAAGCCAGTAATTCTATCTCCC
1 GATGGCGGATTTTACCTCCCTGAGGTTACAGA-GGAGTACATTGAAGCCAGTAATTCTATCTCCC
*
51194575 TGAGCAACAGTGGA
65 TGGGCAACAGTGGA
51194589 GAAGCAGTAG
Statistics
Matches: 192, Mismatches: 16, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
132 190 0.99
133 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (132 bp):
GATGGCGGATTTTACCTCCCTGAGGTTACAGAGGAGTACATTGAAGCCAGTAATTCTATCTCCCT
GGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAAAAGTAGTGGAGCAAATCG
AA
Found at i:51194662 original size:44 final size:44
Alignment explanation
Indices: 51194597--51195039 Score: 336
Period size: 44 Copynumber: 10.0 Consensus size: 44
51194587 GAGAAGCAGT
** * * *
51194597 AGATCTTGTCTTCATGTACTGGCATGAAGTAGATTAAAGATACC
1 AGATCTTGTCTTCACATACTGGCGTGAAGTAGATCAAAGATAAC
* * * * * *
51194641 ATATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAAC
1 AGATCTTGTCTTCACATACTGG-CGTGAAGTAGATCAAAGATAAC
**
51194686 AGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAAC
1 AGATCTTGTCTTCACATACTGGCGTGAAGTAGATCAAAGATAAC
* * * * * * *
51194730 AGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGA-AAGT
1 AGATCTTGTCTTCACATACTGG-CGTGAAGTAGATCAAAGATAA-C
* **
51194775 AGATCTTGTCATCATGTACTGGCGTGAAGTAGATCAAAGATAAC
1 AGATCTTGTCTTCACATACTGGCGTGAAGTAGATCAAAGATAAC
* * * * * ** * *
51194819 AGATATTGCCTTCCCATACTGGTGGCGAAACAGATCGAAGA-AAGT
1 AGATCTTGTCTTCACATACTGG-CGTGAAGTAGATCAAAGATAA-C
** * *
51194864 AGATCTTGTCTTCATGTACTGGTGTGAAGTAGATCAAAGAGAAC
1 AGATCTTGTCTTCACATACTGGCGTGAAGTAGATCAAAGATAAC
* * *
51194908 AGATCTTGTCTTCCCATACTGGTGGTGAAGT-GCATCGAAGA-AAGC
1 AGATCTTGTCTTCACATACTGG-CGTGAAGTAG-ATCAAAGATAA-C
* ** * * *
51194953 AGATCTTATCTTCATGTACTGGTGTGAAGTAGATCAAAGAGAGC
1 AGATCTTGTCTTCACATACTGGCGTGAAGTAGATCAAAGATAAC
* * * *
51194997 AGATCTTGTCTTCCCATACTGGTGGTAAAGTAGATCGAAGATA
1 AGATCTTGTCTTCACATACTGG-CGTGAAGTAGATCAAAGATA
51195040 CAAGTTTTAT
Statistics
Matches: 305, Mismatches: 81, Indels: 25
0.74 0.20 0.06
Matches are distributed among these distances:
44 156 0.51
45 149 0.49
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (44 bp):
AGATCTTGTCTTCACATACTGGCGTGAAGTAGATCAAAGATAAC
Found at i:51194748 original size:89 final size:89
Alignment explanation
Indices: 51194597--51195037 Score: 659
Period size: 89 Copynumber: 5.0 Consensus size: 89
51194587 GAGAAGCAGT
* * * *
51194597 AGATCTTGTCTTCATGTACTGGCATGAAGTAGATTAAAGATACCATATCTTGTCTTCCCATACTG
1 AGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTG
*
51194662 GTGGCGAAGTAGATCGAAGAAAAC
66 GTGGCGAAGTAGATCGAAGAAAGC
*
51194686 AGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGCCTTCCCATACTG
1 AGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTG
* *
51194751 GTGGCGAAGCAGATCGAAGAAAGT
66 GTGGCGAAGTAGATCGAAGAAAGC
* * *
51194775 AGATCTTGTCATCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATATTGCCTTCCCATACTG
1 AGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTG
** *
51194840 GTGGCGAAACAGATCGAAGAAAGT
66 GTGGCGAAGTAGATCGAAGAAAGC
* *
51194864 AGATCTTGTCTTCATGTACTGGTGTGAAGTAGATCAAAGAGAACAGATCTTGTCTTCCCATACTG
1 AGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTG
*
51194929 GTGGTGAAGT-GCATCGAAGAAAGC
66 GTGGCGAAGTAG-ATCGAAGAAAGC
* * * *
51194953 AGATCTTATCTTCATGTACTGGTGTGAAGTAGATCAAAGAGAGCAGATCTTGTCTTCCCATACTG
1 AGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTG
**
51195018 GTGGTAAAGTAGATCGAAGA
66 GTGGCGAAGTAGATCGAAGA
51195038 TACAAGTTTT
Statistics
Matches: 327, Mismatches: 23, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
88 1 0.00
89 325 0.99
90 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.27
Consensus pattern (89 bp):
AGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTG
GTGGCGAAGTAGATCGAAGAAAGC
Found at i:51195227 original size:44 final size:44
Alignment explanation
Indices: 51195179--51195672 Score: 206
Period size: 44 Copynumber: 11.2 Consensus size: 44
51195169 CCAGTAATTC
*
51195179 TATCTCCCTGGGCAGCAGAGGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
* * * * * *
51195223 TATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGACAGATTT
1 TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
* * * * * * *
51195267 TACCTCCCTGAGGTTA-CTGTGGAGTACATTGAAGCCAGTA-A-TTC-
1 TATCTCCCTG-GG-CAGCAGTGGAATAGATTGAAG--ATTACAGATCT
* * *
51195311 TATCTCCATGAGCAACAGTGGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
** * ** * ** * *
51195355 TATCTCCCTAAGCAGTAGTGGAGCAGA-TCAAGGATGGCGGATTT
1 TATCTCCCTGGGCAGCAGTGGAATAGATTGAA-GATTACAGATCT
* * * * * * * * *
51195399 TACCTCCATGAGGTTA-CAGTAGAGTACATTAAAGCCAGTA-A-TTC-
1 TATCTCCCTG-GG-CAGCAGTGGAATAGATTGAAG--ATTACAGATCT
*
51195443 TATCTCACTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
** * ** * ** *
51195487 TATCTCCCTAAGCAGTAGTGGAGCAGA-TCAATGATGGC-GAATTT
1 TATCTCCCTGGGCAGCAGTGGAATAGATTGAA-GATTACAG-ATCT
* * * * * * ***
51195531 TACCTCCCTGAGGTTA-TAGTGGAGTACACTGAAGCCAACA-AT-T
1 TATCTCCCTG-GG-CAGCAGTGGAATAGATTGAAGATTACAGATCT
51195574 CTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
1 -TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
* * * * * *
51195619 TATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGACAGATTT
1 TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
*
51195663 TACCTCCCTG
1 TATCTCCCTG
51195673 AGGTTATAGT
Statistics
Matches: 320, Mismatches: 102, Indels: 56
0.67 0.21 0.12
Matches are distributed among these distances:
41 6 0.02
42 5 0.02
43 63 0.20
44 191 0.60
45 42 0.13
46 10 0.03
47 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (44 bp):
TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
Found at i:51195251 original size:132 final size:132
Alignment explanation
Indices: 51195088--51195741 Score: 1004
Period size: 132 Copynumber: 5.0 Consensus size: 132
51195078 AAACCACAAG
*
51195088 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGGATTTTACCTCCCTGAGGTTATA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACCTCCCTGAGGTTATA
*
51195153 GTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGAGGAATAGATTGAAGATTACA
66 GTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACA
51195218 GA
131 GA
* * * * *
51195220 TCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGACAGATTTTACCTCCCTGAGGTTACT
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACCTCCCTGAGGTTA-T
* * *
51195285 -GTGGAGTACATTGAAGCCAGTAATTCTATCTCCATGAGCAACAGTGGAATAGATTGAAGATTAC
65 AGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTAC
51195349 AGA
130 AGA
* * *
51195352 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAGGATGGCGGATTTTACCTCCATGAGGTTACA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACCTCCCTGAGGTTATA
* * *
51195417 GTAGAGTACATTAAAGCCAGTAATTCTATCTCACTGGGCAGCAGTGGAATAGATTGAAGATTACA
66 GTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACA
51195482 GA
131 GA
* *
51195484 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAATGATGGCGAATTTTACCTCCCTGAGGTTATA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACCTCCCTGAGGTTATA
* **
51195549 GTGGAGTACACTGAAGCCAACAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACA
66 GTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACA
51195614 GA
131 GA
* * * * *
51195616 TCTTATCTCCCTAGGCAGTAGTGGAGTAGATCGAAGATGACAGATTTTACCTCCCTGAGGTTATA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACCTCCCTGAGGTTATA
* * * * * *
51195681 GTGGACTATATTGAAGCCAGTAATTCTATCTCCCTGGTCGGCAGTGAAATAGATCGAAGAT
66 GTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGAT
51195742 AGCAGACCTT
Statistics
Matches: 470, Mismatches: 50, Indels: 4
0.90 0.10 0.01
Matches are distributed among these distances:
132 469 1.00
133 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (132 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCGGATTTTACCTCCCTGAGGTTATA
GTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACA
GA
Found at i:51195797 original size:44 final size:44
Alignment explanation
Indices: 51195724--51195890 Score: 208
Period size: 44 Copynumber: 3.8 Consensus size: 44
51195714 CTGGTCGGCA
* * *
51195724 GTGAAATAGATCGAAGATAGCAGACCTTGTCTTCATGTATTGGC
1 GTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
* * *** * *
51195768 GTGAAGTAGATCGAAGAAAGTAGGTCTTGTCTTCCCATACTGGTG
1 GTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-C
*
51195813 GTGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGC
1 GTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
* *
51195857 GTGAAGTAGATCAAAGACAGCAGATCTTGTCTTC
1 GTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTC
51195891 CCATTTTGGT
Statistics
Matches: 103, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
44 65 0.63
45 38 0.37
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (44 bp):
GTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
Found at i:51195828 original size:45 final size:45
Alignment explanation
Indices: 51195724--51195918 Score: 205
Period size: 44 Copynumber: 4.4 Consensus size: 45
51195714 CTGGTCGGCA
* * * * *** *
51195724 GTGAAATAGATCGAAGATAGCAGACCTTGTCTTCATGTATTGG-C
1 GTGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCCCATATTGGTG
* *
51195768 GTGAAGTAGATCGAAGAAAGTAGGTCTTGTCTTCCCATACTGGTG
1 GTGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCCCATATTGGTG
*** *
51195813 GTGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGG-C
1 GTGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCCCATATTGGTG
* * * *
51195857 GTGAAGTAGATCAAAGACAGCAGATCTTGTCTTCCCATTTTGGTG
1 GTGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCCCATATTGGTG
*
51195902 GCGAAGTAGATCGAAGA
1 GTGAAGTAGATCGAAGA
51195919 TACAAGTCTT
Statistics
Matches: 123, Mismatches: 26, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
44 70 0.57
45 53 0.43
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (45 bp):
GTGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCCCATATTGGTG
Found at i:51195885 original size:89 final size:89
Alignment explanation
Indices: 51195724--51195918 Score: 291
Period size: 89 Copynumber: 2.2 Consensus size: 89
51195714 CTGGTCGGCA
* * * *
51195724 GTGAAATAGATCGAAGATAGCAGACCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAGT
1 GTGAAGTAGATCGAAGAAAGCAGACCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGAAAGC
*
51195789 AGGTCTTGTCTTCCCATACTGGTG
66 AGATCTTGTCTTCCCATACTGGTG
* * *
51195813 GTGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGACAGC
1 GTGAAGTAGATCGAAGAAAGCAGACCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGAAAGC
**
51195878 AGATCTTGTCTTCCCATTTTGGTG
66 AGATCTTGTCTTCCCATACTGGTG
*
51195902 GCGAAGTAGATCGAAGA
1 GTGAAGTAGATCGAAGA
51195919 TACAAGTCTT
Statistics
Matches: 95, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
89 95 1.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (89 bp):
GTGAAGTAGATCGAAGAAAGCAGACCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGAAAGC
AGATCTTGTCTTCCCATACTGGTG
Found at i:51197036 original size:3 final size:3
Alignment explanation
Indices: 51197028--51197060 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
51197018 TAGTCCCCAT
51197028 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
51197061 CTACTACTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:51200451 original size:3 final size:3
Alignment explanation
Indices: 51200443--51200478 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
51200433 GAATATAGGT
51200443 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
51200479 CAGTAATAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:51210686 original size:43 final size:43
Alignment explanation
Indices: 51210623--51210741 Score: 202
Period size: 43 Copynumber: 2.8 Consensus size: 43
51210613 TAAATCCATC
* **
51210623 TTGTGGGAAAAGCGCTGCTAAAGGTCGTGGTCTATAGCGGTGT
1 TTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTATAGCGGCAT
51210666 TTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTATAGCGGCAT
1 TTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTATAGCGGCAT
*
51210709 TTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCT
1 TTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCT
51210742 CACTACACCA
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 72 1.00
ACGTcount: A:0.23, C:0.17, G:0.35, T:0.25
Consensus pattern (43 bp):
TTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTATAGCGGCAT
Done.