Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60343961
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 596159 characters in sequence are not A, C, G, or T
File 19 of 204
Found at i:5559761 original size:20 final size:20
Alignment explanation
Indices: 5559738--5559805 Score: 82
Period size: 20 Copynumber: 3.4 Consensus size: 20
5559728 TTTCTATTCG
* *
5559738 TATAAACTATAATTCATTCA
1 TATAAACAATAATTCATCCA
* ** *
5559758 TATAACCAATGTTTCATCCG
1 TATAAACAATAATTCATCCA
5559778 TATAAACAATAATTCATCCA
1 TATAAACAATAATTCATCCA
5559798 TATAAACA
1 TATAAACA
5559806 CATATCTTAT
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.44, C:0.19, G:0.03, T:0.34
Consensus pattern (20 bp):
TATAAACAATAATTCATCCA
Found at i:5559996 original size:22 final size:22
Alignment explanation
Indices: 5559971--5560029 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 22
5559961 CCTGACCTAA
*
5559971 TAAACAGTAGGCTC-TGACGAGC
1 TAAACAGTAAGCTCAT-ACGAGC
*
5559993 TAAATAGTAAGCTCATACGAGC
1 TAAACAGTAAGCTCATACGAGC
*
5560015 TGAAACGGTAAGCTC
1 T-AAACAGTAAGCTC
5560030 CAATAAGCTG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
22 19 0.61
23 12 0.39
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.20
Consensus pattern (22 bp):
TAAACAGTAAGCTCATACGAGC
Found at i:5564000 original size:45 final size:45
Alignment explanation
Indices: 5563936--5564025 Score: 144
Period size: 45 Copynumber: 2.0 Consensus size: 45
5563926 ACAACATACA
* * *
5563936 TGGTGGCTTCGTCTACAACCTACATGACAGCTTGTCTGTGAATAT
1 TGGTGACTTCGTCCACAACCTACATGACAACTTGTCTGTGAATAT
*
5563981 TGGTGACTTCGTCCACAACCTACATGGCAACTTGTCTGTGAATAT
1 TGGTGACTTCGTCCACAACCTACATGACAACTTGTCTGTGAATAT
5564026 CGGTAGTTGT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.32
Consensus pattern (45 bp):
TGGTGACTTCGTCCACAACCTACATGACAACTTGTCTGTGAATAT
Found at i:5569597 original size:28 final size:28
Alignment explanation
Indices: 5569557--5569610 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
5569547 TTTATGATGG
5569557 GATGATATGTATATGATGACACTACAGA
1 GATGATATGTATATGATGACACTACAGA
5569585 GATGATATGTATATGATGACACTACA
1 GATGATATGTATATGATGACACTACA
5569611 ATAATGGGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.30
Consensus pattern (28 bp):
GATGATATGTATATGATGACACTACAGA
Found at i:5569622 original size:33 final size:29
Alignment explanation
Indices: 5569553--5569630 Score: 104
Period size: 28 Copynumber: 2.6 Consensus size: 29
5569543 TGTTTTTATG
5569553 ATGGGATGATATGTATATGATGACACTAC
1 ATGGGATGATATGTATATGATGACACTAC
*
5569582 A-GAGATGATATGTATATGATGACACTAC
1 ATGGGATGATATGTATATGATGACACTAC
5569610 AATAATGGGATGATATGTATA
1 ----ATGGGATGATATGTATA
5569631 CGATTGGCAT
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
28 26 0.62
29 1 0.02
32 1 0.02
33 14 0.33
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (29 bp):
ATGGGATGATATGTATATGATGACACTAC
Found at i:5571958 original size:13 final size:13
Alignment explanation
Indices: 5571927--5571959 Score: 59
Period size: 12 Copynumber: 2.6 Consensus size: 13
5571917 ATTAAAAATA
5571927 AAAATAATTTATT
1 AAAATAATTTATT
5571940 -AAATAATTTATT
1 AAAATAATTTATT
5571952 AAAATAAT
1 AAAATAAT
5571960 AAATTATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 12 0.63
13 7 0.37
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (13 bp):
AAAATAATTTATT
Found at i:5571981 original size:16 final size:16
Alignment explanation
Indices: 5571936--5571984 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
5571926 AAAAATAATT
5571936 TATTAAATAATTTATTA
1 TATT-AATAATTTATTA
**
5571953 -A--AATAATAAATTA
1 TATTAATAATTTATTA
5571966 TATTAATAATTTATTA
1 TATTAATAATTTATTA
5571982 TAT
1 TAT
5571985 GATTAGATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 7
0.69 0.11 0.19
Matches are distributed among these distances:
13 10 0.40
14 1 0.04
16 14 0.56
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TATTAATAATTTATTA
Found at i:5575591 original size:62 final size:62
Alignment explanation
Indices: 5575520--5575641 Score: 226
Period size: 62 Copynumber: 2.0 Consensus size: 62
5575510 AGTATTATTT
*
5575520 ATATATGTCAAATTCTGCTGTTTGTCATTGCACTATGTGTCCTTATACTCTAATTTAGTTTA
1 ATATATGTCAAATTCTGCTGTTTGTCATTGCACTATGTGTACTTATACTCTAATTTAGTTTA
*
5575582 ATATATGTCAAATTCTGCTGTTTGTCATTTCACTATGTGTACTTATACTCTAATTTAGTT
1 ATATATGTCAAATTCTGCTGTTTGTCATTGCACTATGTGTACTTATACTCTAATTTAGTT
5575642 ATTTTTTTTA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.25, C:0.16, G:0.12, T:0.48
Consensus pattern (62 bp):
ATATATGTCAAATTCTGCTGTTTGTCATTGCACTATGTGTACTTATACTCTAATTTAGTTTA
Found at i:5577777 original size:4 final size:4
Alignment explanation
Indices: 5577768--5577799 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
5577758 AAGATAAAAC
5577768 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
5577800 AATCTTTTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:5579421 original size:17 final size:18
Alignment explanation
Indices: 5579395--5579428 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
5579385 ATTAAGTTTA
*
5579395 TATAAGATATTA-ATTAT
1 TATAAAATATTATATTAT
5579412 TATAAAATATTATATTA
1 TATAAAATATTATATTA
5579429 AATCATTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (18 bp):
TATAAAATATTATATTAT
Found at i:5582590 original size:41 final size:40
Alignment explanation
Indices: 5582513--5582611 Score: 99
Period size: 41 Copynumber: 2.4 Consensus size: 40
5582503 TTGATGGTAC
* * * * *
5582513 ATTGATTGGAAAGTGGAAAAATGTATTGGTATTGAATTGTAT
1 ATTGATTAGAAAGT-GAAAAATGAATTGGAAATGAATTGT-G
* *
5582555 ATTGATTAGAAAGTGAAAAGTGAATTTGAAATGAATTGTG
1 ATTGATTAGAAAGTGAAAAATGAATTGGAAATGAATTGTG
* *
5582595 ATTGAATCGAAAGTGAA
1 ATTGATTAGAAAGTGAA
5582612 TTTGAAATAG
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
40 15 0.31
41 20 0.42
42 13 0.27
ACGTcount: A:0.40, C:0.01, G:0.25, T:0.33
Consensus pattern (40 bp):
ATTGATTAGAAAGTGAAAAATGAATTGGAAATGAATTGTG
Found at i:5592771 original size:3 final size:3
Alignment explanation
Indices: 5592763--5592809 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
5592753 TGCAAAATTG
5592763 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
5592810 TTATTTAACC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:5594281 original size:20 final size:21
Alignment explanation
Indices: 5594258--5594296 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
5594248 TAATGAAAAT
5594258 AATTTAAAAATTT-AAAACAG
1 AATTTAAAAATTTGAAAACAG
*
5594278 AATTTCAAAATTTGAAAAC
1 AATTTAAAAATTTGAAAAC
5594297 TAAAAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.56, C:0.08, G:0.05, T:0.31
Consensus pattern (21 bp):
AATTTAAAAATTTGAAAACAG
Found at i:5594470 original size:22 final size:22
Alignment explanation
Indices: 5594434--5594489 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
5594424 AAAATTTAGT
*
5594434 TTTTTAAAATATTTATTAGAA-AA
1 TTTTTAAAA-CTTTATT-GAATAA
5594457 TTTTTAAAACTTTATTGAATAA
1 TTTTTAAAACTTTATTGAATAA
* *
5594479 TGTTCAAAACT
1 TTTTTAAAACT
5594490 CTTAAAACAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 3 0.10
22 17 0.59
23 9 0.31
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.46
Consensus pattern (22 bp):
TTTTTAAAACTTTATTGAATAA
Found at i:5595763 original size:66 final size:66
Alignment explanation
Indices: 5595637--5595767 Score: 167
Period size: 66 Copynumber: 2.0 Consensus size: 66
5595627 TCTGAAGCTA
* * ** *
5595637 TAGCTGGAGTTCGTCATATTTTTTTGTTGCCTCTGCTTCTCTCGCTGCTGCCTTCGCTTTAAGTT
1 TAGCTGGAGTTCATCATATTTTTTTGTAGCCTCTGCTTCTCTCAATGCTGCCTTCACTTTAAGTT
5595702 G
66 G
* *
5595703 TAGCTGGAGTTCATTATATTTTCTTTG-AGCTTCTGCTTCTCTCAATGCTGCC-TCTACTTTAAG
1 TAGCTGGAGTTCATCATATTTT-TTTGTAGCCTCTGCTTCTCTCAATGCTGCCTTC-ACTTTAAG
5595766 TT
64 TT
5595768 AAGCAATTTG
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
65 2 0.04
66 50 0.89
67 4 0.07
ACGTcount: A:0.13, C:0.23, G:0.18, T:0.46
Consensus pattern (66 bp):
TAGCTGGAGTTCATCATATTTTTTTGTAGCCTCTGCTTCTCTCAATGCTGCCTTCACTTTAAGTT
G
Found at i:5604021 original size:36 final size:35
Alignment explanation
Indices: 5603947--5604038 Score: 102
Period size: 36 Copynumber: 2.7 Consensus size: 35
5603937 GCAGTCAGGG
* *
5603947 AAAATCTAAGGGATTTGGGG--ATTTTTGATTTGGGAA
1 AAAAACTAAGGGATTTGGGGAAAATTTTGA--TGGG-A
5603983 AAAAACTAAGGGATTTGGGGAAAATTTTGA-GGGA
1 AAAAACTAAGGGATTTGGGGAAAATTTTGATGGGA
*
5604017 AAAAA-TAAGGGATTTCGGGAAA
1 AAAAACTAAGGGATTTGGGGAAA
5604039 CTGATTTGGG
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
33 16 0.31
34 6 0.12
35 3 0.06
36 19 0.37
38 7 0.14
ACGTcount: A:0.39, C:0.03, G:0.30, T:0.27
Consensus pattern (35 bp):
AAAAACTAAGGGATTTGGGGAAAATTTTGATGGGA
Found at i:5604026 original size:33 final size:33
Alignment explanation
Indices: 5603943--5604038 Score: 97
Period size: 33 Copynumber: 2.8 Consensus size: 33
5603933 GCAGGCAGTC
** *
5603943 AGGGAAAATCTAAGGGATTTGGGG--ATTTTTG
1 AGGGAAAAAATAAGGGATTTGGGGAAAATTTTG
5603974 ATTTGGGAAAAAAACTAAGGGATTTGGGGAAAATTTTG
1 A---GGG-AAAAAA-TAAGGGATTTGGGGAAAATTTTG
*
5604012 AGGGAAAAAATAAGGGATTTCGGGAAA
1 AGGGAAAAAATAAGGGATTTGGGGAAA
5604039 CTGATTTGGG
Statistics
Matches: 54, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
31 1 0.02
33 16 0.30
34 9 0.17
35 7 0.13
36 14 0.26
38 7 0.13
ACGTcount: A:0.39, C:0.03, G:0.32, T:0.26
Consensus pattern (33 bp):
AGGGAAAAAATAAGGGATTTGGGGAAAATTTTG
Found at i:5610379 original size:65 final size:66
Alignment explanation
Indices: 5610307--5610466 Score: 250
Period size: 67 Copynumber: 2.4 Consensus size: 66
5610297 AAAATAAAAA
*
5610307 TAAAAAAACAGCACATAGAAACCAAAAAGAAAATTCAATCAAAACACAGAATCCTACATTAACCC
1 TAAAAAAACAGCACATAGAAACCAAAAAGAAAATTCAATCAAAACACAAAATCCTACATTAACCC
5610372 T
66 T
*
5610373 TAAAAAAAACAGCACATAGAAACCAAAAAGAATATTCAATCAAAACACAAAATCCTACATTAACC
1 T-AAAAAAACAGCACATAGAAACCAAAAAGAAAATTCAATCAAAACACAAAATCCTACATTAACC
5610438 CT
65 CT
* * *
5610440 T-AAAGAACATCACATAAAAACACAAAA
1 TAAAAAAACAGCACATAGAAAC-CAAAA
5610467 CAAAAACTGG
Statistics
Matches: 87, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
65 17 0.20
66 6 0.07
67 64 0.74
ACGTcount: A:0.58, C:0.22, G:0.05, T:0.15
Consensus pattern (66 bp):
TAAAAAAACAGCACATAGAAACCAAAAAGAAAATTCAATCAAAACACAAAATCCTACATTAACCC
T
Found at i:5610385 original size:67 final size:67
Alignment explanation
Indices: 5610308--5610443 Score: 254
Period size: 67 Copynumber: 2.0 Consensus size: 67
5610298 AAATAAAAAT
*
5610308 AAAAAAACAGCACATAGAAACCAAAAAGAAAATTCAATCAAAACACAGAATCCTACATTAACCCT
1 AAAAAAACAGCACATAGAAACCAAAAAGAAAATTCAATCAAAACACAAAATCCTACATTAACCCT
5610373 TA
66 TA
*
5610375 AAAAAAACAGCACATAGAAACCAAAAAGAATATTCAATCAAAACACAAAATCCTACATTAACCCT
1 AAAAAAACAGCACATAGAAACCAAAAAGAAAATTCAATCAAAACACAAAATCCTACATTAACCCT
5610440 TA
66 TA
5610442 AA
1 AA
5610444 GAACATCACA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 67 1.00
ACGTcount: A:0.57, C:0.22, G:0.05, T:0.15
Consensus pattern (67 bp):
AAAAAAACAGCACATAGAAACCAAAAAGAAAATTCAATCAAAACACAAAATCCTACATTAACCCT
TA
Found at i:5613886 original size:16 final size:17
Alignment explanation
Indices: 5613857--5613888 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
5613847 AAATATAGAG
5613857 GGGGAATAAAAAGTTTT
1 GGGGAATAAAAAGTTTT
5613874 GGGGAAT-AAAAGTTT
1 GGGGAATAAAAAGTTT
5613889 GAGTGAAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.31, T:0.28
Consensus pattern (17 bp):
GGGGAATAAAAAGTTTT
Found at i:5614220 original size:30 final size:30
Alignment explanation
Indices: 5614159--5614220 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
5614149 GCAGGGGAGG
* **
5614159 GGAGTAAAAGTTTTAGGGGGAAAGTGCAAA
1 GGAGTAAAAGTTTTAGGGGAAAAGTAAAAA
5614189 GGAGTAAAAGTTTT-GAGGGAAAAGTAAAAA
1 GGAGTAAAAGTTTTAG-GGGAAAAGTAAAAA
5614219 GG
1 GG
5614221 TTTAGAGTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 1 0.04
30 27 0.96
ACGTcount: A:0.44, C:0.02, G:0.35, T:0.19
Consensus pattern (30 bp):
GGAGTAAAAGTTTTAGGGGAAAAGTAAAAA
Found at i:5614275 original size:9 final size:9
Alignment explanation
Indices: 5614261--5614297 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
5614251 TATAGTTTGA
5614261 TATTCGAAT
1 TATTCGAAT
5614270 TATTCGAAT
1 TATTCGAAT
*
5614279 TATTCGAGT
1 TATTCGAAT
5614288 TATTCGAAT
1 TATTCGAAT
5614297 T
1 T
5614298 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:5616896 original size:30 final size:29
Alignment explanation
Indices: 5616780--5616903 Score: 149
Period size: 29 Copynumber: 4.2 Consensus size: 29
5616770 AATTTTTTTG
5616780 CATTTTGACCCCTAAACTTTTTAAAATTA
1 CATTTTGACCCCTAAACTTTTTAAAATTA
5616809 CATTTTGACCCCTAAACTTTTTAAAATTA
1 CATTTTGACCCCTAAACTTTTTAAAATTA
*** * * *
5616838 CACCATGACCCCTAAGCCTTTTGAAATTA
1 CATTTTGACCCCTAAACTTTTTAAAATTA
* * *
5616867 TATTTTGACCCTTAAATTTTCTTAAAATTA
1 CATTTTGACCCCTAAACTTT-TTAAAATTA
*
5616897 TATTTTG
1 CATTTTG
5616904 GCCCGAAAAG
Statistics
Matches: 79, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
29 64 0.81
30 15 0.19
ACGTcount: A:0.32, C:0.20, G:0.06, T:0.42
Consensus pattern (29 bp):
CATTTTGACCCCTAAACTTTTTAAAATTA
Found at i:5617291 original size:21 final size:21
Alignment explanation
Indices: 5617251--5617293 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
5617241 AGGGTTTCCG
**
5617251 AAAGAAGAAAAGAAGGAAGAA
1 AAAGAAGAAAAGAAAAAAGAA
5617272 AAAGAAGAAAAGAAAAAAGAA
1 AAAGAAGAAAAGAAAAAAGAA
5617293 A
1 A
5617294 TAAAAAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (21 bp):
AAAGAAGAAAAGAAAAAAGAA
Found at i:5617575 original size:17 final size:15
Alignment explanation
Indices: 5617532--5617575 Score: 52
Period size: 17 Copynumber: 2.7 Consensus size: 15
5617522 AGCAGGCCTG
5617532 CAGTAGCCCAGTCCC
1 CAGTAGCCCAGTCCC
5617547 CAGTAGGCCCAGTTCGCC
1 CAGTA-GCCCAG-TC-CC
*
5617565 CATTAGCCCAG
1 CAGTAGCCCAG
5617576 CAGAAAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 5 0.20
16 6 0.24
17 8 0.32
18 6 0.24
ACGTcount: A:0.20, C:0.41, G:0.23, T:0.16
Consensus pattern (15 bp):
CAGTAGCCCAGTCCC
Found at i:5617588 original size:8 final size:8
Alignment explanation
Indices: 5617577--5617623 Score: 69
Period size: 8 Copynumber: 5.9 Consensus size: 8
5617567 TTAGCCCAGC
5617577 AGAAAAAA
1 AGAAAAAA
5617585 AGAAAAAA
1 AGAAAAAA
*
5617593 A-AAAAGA
1 AGAAAAAA
5617600 AGAAAAAA
1 AGAAAAAA
5617608 AGAAAAAA
1 AGAAAAAA
5617616 AGGAAAAA
1 A-GAAAAA
5617624 GCCCGAGTCG
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
7 6 0.17
8 23 0.66
9 6 0.17
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (8 bp):
AGAAAAAA
Found at i:5617595 original size:11 final size:11
Alignment explanation
Indices: 5617579--5617616 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
5617569 AGCCCAGCAG
5617579 AAAAAAAGAAAA
1 AAAAAAAG-AAA
*
5617591 AAAAAAAGAAG
1 AAAAAAAGAAA
5617602 AAAAAAAGAAA
1 AAAAAAAGAAA
5617613 AAAA
1 AAAA
5617617 GGAAAAAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
11 16 0.67
12 8 0.33
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (11 bp):
AAAAAAAGAAA
Found at i:5629856 original size:30 final size:29
Alignment explanation
Indices: 5629822--5629879 Score: 71
Period size: 30 Copynumber: 2.0 Consensus size: 29
5629812 TCACCAGATT
*
5629822 TTTTTGAAACTCTGTTTCTTTCAAGAAATA
1 TTTTTCAAACTCTGTTTCTTTCAA-AAATA
** *
5629852 TTTTTCAATTTCTGTTTTTTTCAAAAAT
1 TTTTTCAAACTCTGTTTCTTTCAAAAAT
5629880 CAACTCATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 4 0.17
30 20 0.83
ACGTcount: A:0.28, C:0.12, G:0.07, T:0.53
Consensus pattern (29 bp):
TTTTTCAAACTCTGTTTCTTTCAAAAATA
Found at i:5630319 original size:232 final size:232
Alignment explanation
Indices: 5629852--5630847 Score: 1043
Period size: 232 Copynumber: 4.3 Consensus size: 232
5629842 TCAAGAAATA
* * *
5629852 TTTTTCAATTTCTG-TTTTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGT
1 TTTTTAAATTTCTGTTTTTTTTAAAAAATCAACTCATAATACAAGAGGTGAGTTGAGCCTCGGGT
5629916 CACGCTGAGGTA-T-TTTT-AATTTCTGTTTTTTTTCAAAAATCAACTCATAATACGAGAGGTGA
66 CACGCTGAGGTATTCTTTTAAATTTCTGTTTTTTTT-AAAAATCAACTCATAATACGAGAGGTGA
* * *
5629978 GTTGAGCCTCAGGTCACGCTGAGGTATTTTTAATTTCTATCTTTTTTTTAAAAATCAATTCATAA
130 GTTGAGCCTCAGGTCACGCCGAGGTATTTTTAATTTCTAT-TTTTTTTCAAAAATCAACTCATAA
* *
5630043 TACGAGAGGTGAGTTGAGTCTCGGGTCACGCTGAGGTA-
194 TACGAGAGGTGAGTTGAGCCTCGGGTCACGCCGAGGTAT
*
5630081 TTTTT-AATTTCTGTCTTTTTTTAAAAAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTC
1 TTTTTAAATTTCTGT-TTTTTTT---AAAAAATCAACTCATAATACAAGAGGTGAGTTGAGCCTC
*
5630145 GGGTCACGCTGAGGTA-T-TTTT-AATTTCTGTCTTTTTTT-AAAATCAACTCATAATACGAAAG
62 GGGTCACGCTGAGGTATTCTTTTAAATTTCTGT-TTTTTTTAAAAATCAACTCATAATACGAGAG
* *
5630206 GTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTTAATTTCTATTTTTTTTCAAAAATTAACTCA
126 GTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTTAATTTCTATTTTTTTTCAAAAATCAACTCA
* *
5630271 TAATACGAGAGGTTAGTTGAGCCTCGGGTCACGCTGAGGTAT
191 TAATACGAGAGGTGAGTTGAGCCTCGGGTCACGCCGAGGTAT
* * * *
5630313 TTTTTAAATTTCTATTTTTTTCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGT
1 TTTTTAAATTTCTGTTTTTTTTAAAAAATCAACTCATAATACAAGAGGTGAGTTGAGCCTCGGGT
* * * *
5630378 CACACGCTGAGGTATTTCTTTTAAATTTATATTTTTTTTCAAAAAAAATCAACTCATATTGCGAG
66 --CACGCTGAGGTA-TTCTTTTAAATTTCTGTTTTTTTT----AAAAATCAACTCATAATACGAG
* * * * *
5630443 AGGTGAGTTGAGCCTC-GGACCATGCCAAGGTATTTCT--TTTCAATTTATGTTTTTCAAAAAAT
124 AGGTGAGTTGAGCCTCAGG-TCACGCCGAGGTATTTTTAATTTCTA-TT-T-TTTTTC-AAAAAT
* * * ** *
5630505 CAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGACCATGCCGAGGTATT
184 CAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCACGCCGAGGTA-T
** * * * *
5630555 TCTTTTAAATTTCTG---TTTTTCGAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGGA
1 T-TTTTAAATTTCTGTTTTTTTTAAAAAATCAACTCATAATACAAGAGGTGAGTTGAGCCTCGGG
* * * * * * *
5630617 CCATGCTGACGTATTTCTTTTAAATTTC--TATTTTTCAAAAATCAACTCATATTGCGAGAGGTG
65 TCACGCTGAGGTA-TTCTTTTAAATTTCTGTTTTTTTTAAAAATCAACTCATAATACGAGAGGTG
* *
5630680 AGTTGAGCCTCGGGTCACGCCGAGGTATTTTTCAA-TTC--TTGTTTTTCAAAAATCAACTCATA
129 AGTTGAGCCTCAGGTCACGCCGAGGTATTTTT-AATTTCTATTTTTTTTCAAAAATCAACTCATA
* * * * *
5630742 CTGCGAGGGGTGAGTTGTGCCTCGGGTCGCATGCCGAGGTATT
193 ATACGAGAGGTGAGTTGAGCCTCGGGT--CACGCCGAGGTA-T
* * * * * *
5630785 TTTTTCAAA-TTCTG---TTTTTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
1 TTTTT-AAATTTCTGTTTTTTTTAAAAAATCAACTCATAATACAAGAGGTGAGTTGAGCCTCGGG
5630846 TC
65 TC
5630848 GCATGCCGAG
Statistics
Matches: 672, Mismatches: 62, Indels: 66
0.84 0.08 0.08
Matches are distributed among these distances:
228 44 0.07
229 102 0.15
230 25 0.04
231 71 0.11
232 129 0.19
233 79 0.12
234 21 0.03
235 7 0.01
236 6 0.01
237 5 0.01
238 28 0.04
239 48 0.07
240 48 0.07
241 45 0.07
242 2 0.00
243 12 0.02
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (232 bp):
TTTTTAAATTTCTGTTTTTTTTAAAAAATCAACTCATAATACAAGAGGTGAGTTGAGCCTCGGGT
CACGCTGAGGTATTCTTTTAAATTTCTGTTTTTTTTAAAAATCAACTCATAATACGAGAGGTGAG
TTGAGCCTCAGGTCACGCCGAGGTATTTTTAATTTCTATTTTTTTTCAAAAATCAACTCATAATA
CGAGAGGTGAGTTGAGCCTCGGGTCACGCCGAGGTAT
Found at i:5630325 original size:78 final size:76
Alignment explanation
Indices: 5629850--5630847 Score: 1024
Period size: 77 Copynumber: 12.9 Consensus size: 76
5629840 TTTCAAGAAA
* *
5629850 TATTTTTCAATTTCT-GTTTTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGG
1 TATTTTT-AATTTCTATTTTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGG
5629914 GTCACGCTGAGG
65 GTCACGCTGAGG
* * *
5629926 TATTTTTAATTTCTGTTTTTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCAGG
1 TATTTTTAATTTCTATTTTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGG
5629991 TCACGCTGAGG
66 TCACGCTGAGG
* * * *
5630002 TATTTTTAATTTCTATCTTTTTTTTAAAAATCAATTCATAATACGAGAGGTGAGTTGAGTCTCGG
1 TATTTTTAATTTCTAT-TTTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGG
5630067 GTCACGCTGAGG
65 GTCACGCTGAGG
* * *
5630079 TATTTTTAATTTCTGTCTTTTTTTAAAAAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCT
1 TATTTTTAATTTCTAT-TTTTTTT---CAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCT
5630144 CGGGTCACGCTGAGG
62 CGGGTCACGCTGAGG
* * * *
5630159 TATTTTTAATTTCTGTCTTTTTTT--AAAATCAACTCATAATACGAAAGGTGAGTTGAGCCTCAG
1 TATTTTTAATTTCTAT-TTTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGG
5630222 GTCACGCTGAGG
65 GTCACGCTGAGG
* * *
5630234 TATTTTTAATTTCTATTTTTTTTCAAAAATTAACTCATAATACGAGAGGTTAGTTGAGCCTCGGG
1 TATTTTTAATTTCTATTTTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGG
5630299 TCACGCTGAGG
66 TCACGCTGAGG
* *
5630310 TATTTTTTAAATTTCTA-TTTTTTTCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC
1 TA-TTTTT-AATTTCTATTTTTTTTC-AAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTC
5630374 GGGTCACACGCTGAGG
63 GGGT--CACGCTGAGG
* *
5630390 TATTTCTTTTAAATTTATATTTTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TA--T-TTTT-AATTTCTATTTTTTTTC---AAAAATCAACTCATAATGCGAGAGGTGAGTTGAG
** * **
5630455 CCTCGGACCATGCCAAGG
59 CCTCGGGTCACGCTGAGG
* * * *
5630473 TATTTCT--TTTCAATTTATGTTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCT
1 TATTTTTAATTTCTA-TT-T-TTTTTC-AAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCT
** * *
5630536 CGGACCATGCCGAGG
62 CGGGTCACGCTGAGG
* * * *
5630551 TATTTCTTTTAAATTTC---TGTTTTTCGAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCT
1 TA--T-TTTT-AATTTCTATTTTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCT
* ** * *
5630613 TGGACCATGCTGACG
62 CGGGTCACGCTGAGG
*
5630628 TATTTCTTTTAAATTTCTA---TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TA--T-TTTT-AATTTCTATTTTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCT
*
5630690 CGGGTCACGCCGAGG
62 CGGGTCACGCTGAGG
* * * *
5630705 TATTTTTCAA-TTC--TTGTTTTTCAAAAATCAACTCATACTGCGAGGGGTGAGTTGTGCCTCGG
1 TATTTTT-AATTTCTATTTTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGG
* *
5630767 GTCGCATGCCGAGG
65 GT--CACGCTGAGG
* * *
5630781 TA-TTTT--TTTCAAATTCTGTTTTTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
1 TATTTTTAATTTC-TATT-T-TTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTC
*
5630843 AGGTC
63 GGGTC
5630848 GCATGCCGAG
Statistics
Matches: 821, Mismatches: 62, Indels: 78
0.85 0.06 0.08
Matches are distributed among these distances:
73 6 0.01
74 58 0.07
75 76 0.09
76 144 0.18
77 211 0.26
78 149 0.18
79 1 0.00
80 97 0.12
81 6 0.01
82 12 0.01
83 17 0.02
84 4 0.00
85 40 0.05
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (76 bp):
TATTTTTAATTTCTATTTTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGG
TCACGCTGAGG
Found at i:5631080 original size:29 final size:29
Alignment explanation
Indices: 5631045--5631160 Score: 133
Period size: 29 Copynumber: 4.0 Consensus size: 29
5631035 AATTTTTTTT
5631045 CATTTTGACCCCTAAACTTTTTAAAATTG
1 CATTTTGACCCCTAAACTTTTTAAAATTG
5631074 CATTTTGACCCCTAAACTTTTTAAAATTG
1 CATTTTGACCCCTAAACTTTTTAAAATTG
*** * * * * *
5631103 CACCATAACCCCTAAGCTCTTTGAAATTA
1 CATTTTGACCCCTAAACTTTTTAAAATTG
* *
5631132 CATTTTGACCCTTAAATTTTCTTAAAATT
1 CATTTTGACCCCTAAACTTT-TTAAAATT
5631161 ATATTTTGGC
Statistics
Matches: 69, Mismatches: 17, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
29 62 0.90
30 7 0.10
ACGTcount: A:0.32, C:0.22, G:0.06, T:0.40
Consensus pattern (29 bp):
CATTTTGACCCCTAAACTTTTTAAAATTG
Found at i:5631674 original size:13 final size:13
Alignment explanation
Indices: 5631631--5631676 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
5631621 GCCCAATCCA
5631631 AAAAAAAGAAATT
1 AAAAAAAGAAATT
* *
5631644 AAGCAAAA-AAAGT
1 AA-AAAAAGAAATT
5631657 AAAAAAAGAAATT
1 AAAAAAAGAAATT
5631670 AAAAAAA
1 AAAAAAA
5631677 ACAGCCCGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
12 4 0.15
13 19 0.70
14 4 0.15
ACGTcount: A:0.78, C:0.02, G:0.09, T:0.11
Consensus pattern (13 bp):
AAAAAAAGAAATT
Found at i:5631847 original size:9 final size:9
Alignment explanation
Indices: 5631833--5631890 Score: 75
Period size: 9 Copynumber: 6.4 Consensus size: 9
5631823 AGCCCAGCAG
5631833 AAAAAAAGA
1 AAAAAAAGA
5631842 AAAAAAAGA
1 AAAAAAAGA
5631851 AGAAAAAA-A
1 A-AAAAAAGA
*
5631860 GAAAAAAG-
1 AAAAAAAGA
5631868 AAAAAAAGA
1 AAAAAAAGA
5631877 AAAAAAAGGA
1 AAAAAAA-GA
5631887 AAAA
1 AAAA
5631891 GCCCGAGTCG
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
8 13 0.30
9 18 0.42
10 12 0.28
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (9 bp):
AAAAAAAGA
Found at i:5631868 original size:15 final size:15
Alignment explanation
Indices: 5631831--5631881 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
5631821 TTAGCCCAGC
*
5631831 AGAAAAAA-AGAAAA
1 AGAAAAAAGAAAAAA
*
5631845 A-AAAGAAGAAAAAA
1 AGAAAAAAGAAAAAA
5631859 AGAAAAAAGAAAAAA
1 AGAAAAAAGAAAAAA
5631874 AGAAAAAA
1 AGAAAAAA
5631882 AAGGAAAAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
13 5 0.16
14 7 0.22
15 20 0.62
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (15 bp):
AGAAAAAAGAAAAAA
Found at i:5632058 original size:22 final size:23
Alignment explanation
Indices: 5632024--5632066 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
5632014 TTTTAAAGCA
5632024 TTTTTTTATATTTCA-TATTTAG
1 TTTTTTTATATTTCATTATTTAG
5632046 TTTTATTTA-ATTTCATTATTT
1 TTTT-TTTATATTTCATTATTT
5632067 TAAATTTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.23, C:0.05, G:0.02, T:0.70
Consensus pattern (23 bp):
TTTTTTTATATTTCATTATTTAG
Found at i:5632400 original size:28 final size:29
Alignment explanation
Indices: 5632359--5632498 Score: 122
Period size: 29 Copynumber: 4.8 Consensus size: 29
5632349 TTTAATTTTT
5632359 TTTCATTTTGACCCCTAAACTTTTTAAAA
1 TTTCATTTTGACCCCTAAACTTTTTAAAA
5632388 TTTCA-TTTGACCCCTAAACTTTTTAAAA
1 TTTCATTTTGACCCCTAAACTTTTTAAAA
* *** * * * *
5632416 TTGCACCATAACCCCTAAGCTCTTTGAAA
1 TTTCATTTTGACCCCTAAACTTTTTAAAA
* * *
5632445 TTACATTTTGACCCTTAAATTTTCTTAAAA
1 TTTCATTTTGACCCCTAAACTTT-TTAAAA
* * *
5632475 TTAT-ATTTTGGCCCCAAAAGTTTT
1 TT-TCATTTTGACCCCTAAACTTTT
5632499 ACTGCATTTG
Statistics
Matches: 86, Mismatches: 22, Indels: 6
0.75 0.19 0.05
Matches are distributed among these distances:
28 27 0.31
29 37 0.43
30 22 0.26
ACGTcount: A:0.31, C:0.21, G:0.06, T:0.41
Consensus pattern (29 bp):
TTTCATTTTGACCCCTAAACTTTTTAAAA
Found at i:5632846 original size:3 final size:3
Alignment explanation
Indices: 5632832--5632871 Score: 57
Period size: 3 Copynumber: 13.7 Consensus size: 3
5632822 GGGTTTCCGA
5632832 AAG AAG AA- AAG AAG AAG AAGG AAG AAG AAG AAG AA- AAG AA
1 AAG AAG AAG AAG AAG AAG AA-G AAG AAG AAG AAG AAG AAG AA
5632872 AAAAGAAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
2 4 0.12
3 27 0.79
4 3 0.09
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:5632858 original size:13 final size:12
Alignment explanation
Indices: 5632832--5632871 Score: 57
Period size: 11 Copynumber: 3.4 Consensus size: 12
5632822 GGGTTTCCGA
5632832 AAGAAGAA-AAG
1 AAGAAGAAGAAG
5632843 AAGAAGAAGGAAG
1 AAGAAGAA-GAAG
5632856 AAGAAGAAGAA-
1 AAGAAGAAGAAG
5632867 AAGAA
1 AAGAA
5632872 AAAAGAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
11 13 0.48
12 3 0.11
13 11 0.41
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (12 bp):
AAGAAGAAGAAG
Found at i:5632877 original size:21 final size:21
Alignment explanation
Indices: 5632831--5632878 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
5632821 AGGGTTTCCG
*
5632831 AAAGAAGAAAAGAAGAAGAAG
1 AAAGAAGAAAAGAAGAAGAAA
*
5632852 GAAGAAGAAGAAGAA-AAGAAA
1 AAAGAAGAA-AAGAAGAAGAAA
5632873 AAAGAA
1 AAAGAA
5632879 ATAAAAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (21 bp):
AAAGAAGAAAAGAAGAAGAAA
Found at i:5633181 original size:18 final size:18
Alignment explanation
Indices: 5633158--5633200 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
5633148 GCCCAGCAGA
5633158 AAAAAAGAAAAAAAAAAG
1 AAAAAAGAAAAAAAAAAG
5633176 AAAAAAGAAAAAAAAAAG
1 AAAAAAGAAAAAAAAAAG
*
5633194 GAAAAAG
1 AAAAAAG
5633201 CCCGAGTCGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (18 bp):
AAAAAAGAAAAAAAAAAG
Found at i:5633193 original size:11 final size:11
Alignment explanation
Indices: 5633157--5633192 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
5633147 AGCCCAGCAG
5633157 AAAAAAAGAAA
1 AAAAAAAGAAA
5633168 AAAAAAAGAAA
1 AAAAAAAGAAA
5633179 AAAGAAAA-AAA
1 AAA-AAAAGAAA
5633190 AAA
1 AAA
5633193 GGAAAAAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 20 0.83
12 4 0.17
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAGAAA
Found at i:5633198 original size:7 final size:6
Alignment explanation
Indices: 5633159--5633200 Score: 52
Period size: 6 Copynumber: 7.0 Consensus size: 6
5633149 CCCAGCAGAA
5633159 AAAAAG AAAAA- AAAAAG AAAAAAG AAAAA- AAAAAGG AAAAAG
1 AAAAAG AAAAAG AAAAAG -AAAAAG AAAAAG AAAAA-G AAAAAG
5633201 CCCGAGTCGT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
5 10 0.31
6 11 0.34
7 11 0.34
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:5633198 original size:11 final size:10
Alignment explanation
Indices: 5633157--5633199 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
5633147 AGCCCAGCAG
5633157 AAAAAAAGAAA
1 AAAAAAAG-AA
5633168 AAAAAAAGAA
1 AAAAAAAGAA
*
5633178 AAAAGAA-AA
1 AAAAAAAGAA
*
5633187 AAAAAAGGAA
1 AAAAAAAGAA
5633197 AAA
1 AAA
5633200 GCCCGAGTCG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
9 7 0.25
10 13 0.46
11 8 0.29
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:5633359 original size:22 final size:23
Alignment explanation
Indices: 5633334--5633376 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
5633324 TTTTAAAGCA
5633334 TTTT-TTTATATTTCA-TATTTAG
1 TTTTATTTA-ATTTCATTATTTAG
5633356 TTTTATTTAATTTCATTATTT
1 TTTTATTTAATTTCATTATTT
5633377 TAAATTTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.23, C:0.05, G:0.02, T:0.70
Consensus pattern (23 bp):
TTTTATTTAATTTCATTATTTAG
Found at i:5636687 original size:53 final size:53
Alignment explanation
Indices: 5636624--5636775 Score: 214
Period size: 53 Copynumber: 2.9 Consensus size: 53
5636614 GTATTTTTCA
* * * *
5636624 ATTTGTAAGATACAATGTTGTTGGTCTTGAACAAAATTGTTTAATTATGTTTT
1 ATTTGTAAGATACAATGTTGTCGGTCTTAAACAAAATCGTTTAATTATGTATT
* * * * *
5636677 ATTTGTAAGATAGAATGATGTCAGTCTTAAATAAAATCATTTAATTATGTATT
1 ATTTGTAAGATACAATGTTGTCGGTCTTAAACAAAATCGTTTAATTATGTATT
*
5636730 ATTTGTAAGATACAATGTTGCCGGTCTTAAACAAAATCGTTTAATT
1 ATTTGTAAGATACAATGTTGTCGGTCTTAAACAAAATCGTTTAATT
5636776 TTTTTTAGTA
Statistics
Matches: 84, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
53 84 1.00
ACGTcount: A:0.35, C:0.08, G:0.15, T:0.42
Consensus pattern (53 bp):
ATTTGTAAGATACAATGTTGTCGGTCTTAAACAAAATCGTTTAATTATGTATT
Found at i:5643353 original size:17 final size:18
Alignment explanation
Indices: 5643331--5643368 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
5643321 TTCTTCCATT
5643331 AAAAAAA-GAAAAAAGAA
1 AAAAAAAGGAAAAAAGAA
*
5643348 AAAAAAAGGAAAAAGGAA
1 AAAAAAAGGAAAAAAGAA
5643366 AAA
1 AAA
5643369 GGGAACTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (18 bp):
AAAAAAAGGAAAAAAGAA
Found at i:5650004 original size:15 final size:14
Alignment explanation
Indices: 5649984--5650014 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
5649974 AGGAAAGAAA
5649984 ATCAAATCAAATCAG
1 ATCAAATCAAA-CAG
5649999 ATCAAATCAAACAG
1 ATCAAATCAAACAG
5650013 AT
1 AT
5650015 TTCTTGTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.55, C:0.19, G:0.06, T:0.19
Consensus pattern (14 bp):
ATCAAATCAAACAG
Found at i:5655644 original size:33 final size:33
Alignment explanation
Indices: 5655605--5655670 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
5655595 CCATTTTTTA
5655605 AGCTTATATATTTTTATCCAAACCACTTTATGC
1 AGCTTATATATTTTTATCCAAACCACTTTATGC
5655638 AGCTTATATATTTTTATCCAAACCACTTTATGC
1 AGCTTATATATTTTTATCCAAACCACTTTATGC
5655671 GGTATGTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.30, C:0.21, G:0.06, T:0.42
Consensus pattern (33 bp):
AGCTTATATATTTTTATCCAAACCACTTTATGC
Found at i:5657926 original size:38 final size:37
Alignment explanation
Indices: 5657857--5657929 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 37
5657847 TTTTCATTAT
* *
5657857 TTCACTTTTTCACTTTTAATCACTATTCAATTCAAAA
1 TTCACTTTTCCACTTTTAATCAATATTCAATTCAAAA
5657894 TTCACTTTTCCA-TTTTCAAGTCAATATTCAATTCAA
1 TTCACTTTTCCACTTTT-AA-TCAATATTCAATTCAA
5657930 TTCCACACAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 4 0.12
37 13 0.41
38 15 0.47
ACGTcount: A:0.32, C:0.22, G:0.01, T:0.45
Consensus pattern (37 bp):
TTCACTTTTCCACTTTTAATCAATATTCAATTCAAAA
Found at i:5657960 original size:23 final size:22
Alignment explanation
Indices: 5657917--5657960 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
5657907 TTTCAAGTCA
5657917 ATATTCAATTCAATTCCACACAT
1 ATATTCAATTCAATT-CACACAT
5657940 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
5657961 TTAATCGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACAT
Found at i:5658085 original size:23 final size:23
Alignment explanation
Indices: 5658059--5658191 Score: 164
Period size: 23 Copynumber: 6.3 Consensus size: 23
5658049 ATAAGTGCCA
5658059 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
5658082 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
5658105 CACTGATATGTAGCCGAAG----
1 CACTGATATGTAGCCGAAGCTAC
5658124 --CTGATATGTAGCCGAAG----
1 CACTGATATGTAGCCGAAGCTAC
5658141 --CTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
5658162 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
5658185 CACTGAT
1 CACTGAT
5658192 CAATAACACT
Statistics
Matches: 100, Mismatches: 4, Indels: 12
0.86 0.03 0.10
Matches are distributed among these distances:
17 34 0.34
23 66 0.66
ACGTcount: A:0.32, C:0.24, G:0.23, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:5658129 original size:17 final size:17
Alignment explanation
Indices: 5658107--5658159 Score: 106
Period size: 17 Copynumber: 3.1 Consensus size: 17
5658097 GAAGCTACCA
5658107 CTGATATGTAGCCGAAG
1 CTGATATGTAGCCGAAG
5658124 CTGATATGTAGCCGAAG
1 CTGATATGTAGCCGAAG
5658141 CTGATATGTAGCCGAAG
1 CTGATATGTAGCCGAAG
5658158 CT
1 CT
5658160 ACCACTGAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 36 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (17 bp):
CTGATATGTAGCCGAAG
Found at i:5661377 original size:19 final size:18
Alignment explanation
Indices: 5661350--5661388 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
5661340 GTATATATAT
*
5661350 ATTTAAAACAGAATAATAA
1 ATTTAAAACAAAATAA-AA
*
5661369 ATTTTAAACAAAATAAAA
1 ATTTAAAACAAAATAAAA
5661387 AT
1 AT
5661389 CAAGTGCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.64, C:0.05, G:0.03, T:0.28
Consensus pattern (18 bp):
ATTTAAAACAAAATAAAA
Found at i:5664855 original size:27 final size:27
Alignment explanation
Indices: 5664816--5664870 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
5664806 ATACTTATAT
5664816 TATATTTAAATTAAATAATATATGAAAA
1 TATATTTAAATTAAATAATA-ATGAAAA
* *
5664844 TATA-TTATATTAAATCATAATGAAAA
1 TATATTTAAATTAAATAATAATGAAAA
5664870 T
1 T
5664871 CATTACATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 8 0.32
27 13 0.52
28 4 0.16
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.40
Consensus pattern (27 bp):
TATATTTAAATTAAATAATAATGAAAA
Found at i:5665759 original size:16 final size:16
Alignment explanation
Indices: 5665738--5665776 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
5665728 TTAAAATAAT
* *
5665738 TTTAAAATAATTTAAC
1 TTTAAAATAATCTAAA
5665754 TTT-AAATAATCTAAA
1 TTTAAAATAATCTAAA
5665769 TTTAAAAT
1 TTTAAAAT
5665777 GATTAGAGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (16 bp):
TTTAAAATAATCTAAA
Found at i:5670798 original size:18 final size:18
Alignment explanation
Indices: 5670762--5670795 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
5670752 GTATAAATAC
5670762 GTATATATAAAATATAAG
1 GTATATATAAAATATAAG
5670780 GTATATA-AAAATATAA
1 GTATATATAAAATATAA
5670796 AGGATAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.32
Consensus pattern (18 bp):
GTATATATAAAATATAAG
Found at i:5672534 original size:44 final size:42
Alignment explanation
Indices: 5672484--5672633 Score: 135
Period size: 44 Copynumber: 3.4 Consensus size: 42
5672474 TCCACACCAT
5672484 TGCAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGCTCCAC
1 TGCAACTTCAAGGAGATAGGATTGGTTA-TT-TGTCTGCTCCAC
** ** *
5672528 TGCAACTTC-AGAGAGAT-GAGATCTGCGGTT-TTAATCCACTCCAT
1 TGCAACTTCAAG-GAGATAG-GAT-T--GGTTATTTGTCTGCTCCAC
*
5672572 TGCAACTTCAAGGAGATAGGATTGATTAGTTTTGTCTGCTCCAC
1 TGCAACTTCAAGGAGATAGGATTGGTTA--TTTGTCTGCTCCAC
*
5672616 TGCAACTTCAGGGAGATA
1 TGCAACTTCAAGGAGATA
5672634 AGACTTGTAT
Statistics
Matches: 84, Mismatches: 12, Indels: 20
0.72 0.10 0.17
Matches are distributed among these distances:
41 3 0.04
43 4 0.05
44 67 0.80
45 6 0.07
47 4 0.05
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.31
Consensus pattern (42 bp):
TGCAACTTCAAGGAGATAGGATTGGTTATTTGTCTGCTCCAC
Found at i:5672565 original size:88 final size:86
Alignment explanation
Indices: 5672432--5672632 Score: 303
Period size: 88 Copynumber: 2.3 Consensus size: 86
5672422 CTTGATGCGA
* * *
5672432 TCTGCTCTACTGCAACTCCAGAGAGATGATCTGCAGTTTTGATCCACACCATTGCAACTTCAAGG
1 TCTGCTCCACTGCAACTTCAGAGAGATGATCTGCAGTTTTAATCCACACCATTGCAACTTCAAGG
*
5672497 AGATAGGATTGGTTACTTCTG
66 AGATAGGATTGATTACTTCTG
* *
5672518 TCTGCTCCACTGCAACTTCAGAGAGATGAGATCTGCGGTTTTAATCCACTCCATTGCAACTTCAA
1 TCTGCTCCACTGCAACTTCAGAGAGAT--GATCTGCAGTTTTAATCCACACCATTGCAACTTCAA
* *
5672583 GGAGATAGGATTGATTAGTTTTG
64 GGAGATAGGATTGATTACTTCTG
*
5672606 TCTGCTCCACTGCAACTTCAGGGAGAT
1 TCTGCTCCACTGCAACTTCAGAGAGAT
5672633 AAGACTTGTA
Statistics
Matches: 104, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
86 25 0.24
88 79 0.76
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.30
Consensus pattern (86 bp):
TCTGCTCCACTGCAACTTCAGAGAGATGATCTGCAGTTTTAATCCACACCATTGCAACTTCAAGG
AGATAGGATTGATTACTTCTG
Found at i:5672926 original size:50 final size:50
Alignment explanation
Indices: 5672864--5673323 Score: 273
Period size: 50 Copynumber: 9.2 Consensus size: 50
5672854 GATCTGTAAT
* * *
5672864 CTTCAATTTGTTCAACTGCAATGTTGGGGAAACTAGATCCGCCGTCGTAG
1 CTTCAATCTGTTCAATTGCAATGTTAGGGAAACTAGATCCGCCGTCGTAG
* ** ** ** * * * *
5672914 CTTCAATCTGTTCCACCGCACCGCCAGGG-AAGTAAGATCCACCGTTGTGG
1 CTTCAATCTGTTCAATTGCAATGTTAGGGAAACT-AGATCCGCCGTCGTAG
* * * *
5672964 CTTCAATCTTTTTTAATTGCAATATTAGGGAAACCAGATCCGCCGTCGTAG
1 CTTCAATC-TGTTCAATTGCAATGTTAGGGAAACTAGATCCGCCGTCGTAG
* * * * * * * *
5673015 CTTCAATCTGTTCCATTGCACTGCTAAGG-AAGTAAGATCTGCCGTTGTGG
1 CTTCAATCTGTTCAATTGCAATGTTAGGGAAACT-AGATCCGCCGTCGTAG
* * * * *
5673065 CTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCGTAG
1 CTTCAATCTGTTCAATTGCAATGTTAGGGAAACTAGATCCGCCGTCGTAG
* * * * * * * * *
5673115 CTTCAATCTATTCCATTGCACTGCTAAGG-AAGTAAGATCTGCCGTTGTGG
1 CTTCAATCTGTTCAATTGCAATGTTAGGGAAACT-AGATCCGCCGTCGTAG
* * * * *
5673165 CTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCGTAG
1 CTTCAATCTGTTCAATTGCAATGTTAGGGAAACTAGATCCGCCGTCGTAG
* *** * * * * * * *
5673215 CTTCAATCTATTCCGCTGTACTGCTAAGG-AAGTAAGATCCGTCG-CTGTGG
1 CTTCAATCTGTTCAATTGCAATGTTAGGGAAACT-AGATCCGCCGTC-GTAG
* * * * * *
5673265 CTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCTGCCGTCGTAG
1 CTTCAATCTGTTCAATTGCAATGTTAGGGAAACTAGATCCGCCGTCGTAG
5673315 CTTCAATCT
1 CTTCAATCT
5673324 ATTCTGCTGT
Statistics
Matches: 290, Mismatches: 109, Indels: 22
0.69 0.26 0.05
Matches are distributed among these distances:
49 10 0.03
50 239 0.82
51 39 0.13
52 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (50 bp):
CTTCAATCTGTTCAATTGCAATGTTAGGGAAACTAGATCCGCCGTCGTAG
Found at i:5673130 original size:100 final size:100
Alignment explanation
Indices: 5672890--5673685 Score: 1196
Period size: 100 Copynumber: 8.0 Consensus size: 100
5672880 TGCAATGTTG
* * * * * * * * *
5672890 GGGAAACTAGATCCGCCGTCGTAGCTTCAATCTGTTCCACCGCACCGCCAGGGAAGTAAGATCCA
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTATTCCGCTGTACTGCTAAGGAAGTAAGATCCG
*
5672955 CCGTTGTGGCTTCAATCTTTTTTAATTGCAATATTA
66 CCGTTGTGGCTTCAATC-TTTTTAATTGCAATATCA
* ** * *
5672991 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCATTGCACTGCTAAGGAAGTAAGATCTG
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTATTCCGCTGTACTGCTAAGGAAGTAAGATCCG
5673056 CCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
** * *
5673091 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTATTCCATTGCACTGCTAAGGAAGTAAGATCTG
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTATTCCGCTGTACTGCTAAGGAAGTAAGATCCG
5673156 CCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
5673191 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTATTCCGCTGTACTGCTAAGGAAGTAAGATCCG
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTATTCCGCTGTACTGCTAAGGAAGTAAGATCCG
* *
5673256 TCGCTGTGGCTTCAATCTTTTTAATTGCAATATCA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
* * * * *
5673291 GGGAAACCAGATCTGCCGTCGTAGCTTCAATCTATTCTGCTGTACTGCTAATGAAGTAAGATTCA
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTATTCCGCTGTACTGCTAAGGAAGTAAGATCCG
* * *
5673356 TCGTTGTGGCTTCAATATCTTTAATTGCAATATCA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
* * *
5673391 GGGAAACCAGATCCGCTGTCGTAGCTTCAATCTATTCCGCTGTAATACTAAGGAAGTAAGATCCG
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTATTCCGCTGTACTGCTAAGGAAGTAAGATCCG
*
5673456 CCGTTGTGGCTTCAATATTTTTAATTGCAATATCA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
* * *
5673491 GGGAAACCAGATCTGCAGTCGTAGCTTCAATCTATTCCGCTGTACTGCTAAGGAAGTAAGATCCA
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTATTCCGCTGTACTGCTAAGGAAGTAAGATCCG
* *
5673556 CCGTTGTGACTTCAATCTCTTTAATTGCAATATCA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
* ** * *
5673591 GGGAAACCAGACCCGATGTCGTAGCTTCAATCTATTCTGCTGTACTGTTAAGGAAGTAAGATCCG
1 GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTATTCCGCTGTACTGCTAAGGAAGTAAGATCCG
5673656 CCGTTGTGGCTTCAATCTTTTTAATTGCAA
66 CCGTTGTGGCTTCAATCTTTTTAATTGCAA
5673686 CCCGCTCCAT
Statistics
Matches: 644, Mismatches: 51, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
100 570 0.89
101 74 0.11
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (100 bp):
GGGAAACCAGATCCGCCGTCGTAGCTTCAATCTATTCCGCTGTACTGCTAAGGAAGTAAGATCCG
CCGTTGTGGCTTCAATCTTTTTAATTGCAATATCA
Found at i:5673420 original size:50 final size:50
Alignment explanation
Indices: 5673364--5673623 Score: 148
Period size: 50 Copynumber: 5.2 Consensus size: 50
5673354 CATCGTTGTG
* * *
5673364 GCTTCAATATCTTTAATTGCAATATCAGGGAAACCAGATCCGCTGTCGTA
1 GCTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCGTA
* **** * * *** * *
5673414 GCTTCAATCTATTCCGCTGTAATA-CTAAGGAAGTAAGATCCGCCGTTGTG
1 GCTTCAATCTTTTTAATTGCAATATC-AGGGAAACCAGATCCGCCGTCGTA
* * *
5673464 GCTTCAATATTTTTAATTGCAATATCAGGGAAACCAGATCTGCAGTCGTA
1 GCTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCGTA
* **** * * * * *** * *
5673514 GCTTCAATCTATTCCGCTGTACT-GCTAAGGAAGTAAGATCCACCGTTGT-
1 GCTTCAATCTTTTTAATTGCAATATC-AGGGAAACCAGATCCGCCGTCGTA
* * **
5673563 GACTTCAATCTCTTTAATTGCAATATCAGGGAAACCAGACCCGATGTCGTA
1 G-CTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCGTA
5673614 GCTTCAATCT
1 GCTTCAATCT
5673624 ATTCTGCTGT
Statistics
Matches: 141, Mismatches: 63, Indels: 12
0.65 0.29 0.06
Matches are distributed among these distances:
49 3 0.02
50 135 0.96
51 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (50 bp):
GCTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCGTA
Found at i:5678279 original size:19 final size:20
Alignment explanation
Indices: 5678245--5678287 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
5678235 ATAAAAAGTA
*
5678245 TAAAGAATATAGAAAAAACT
1 TAAAAAATATAGAAAAAACT
*
5678265 TAAAAAATATA-AAAAACCT
1 TAAAAAATATAGAAAAAACT
5678284 TAAA
1 TAAA
5678288 CCTTAAACCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.67, C:0.07, G:0.05, T:0.21
Consensus pattern (20 bp):
TAAAAAATATAGAAAAAACT
Found at i:5678288 original size:7 final size:7
Alignment explanation
Indices: 5678278--5678310 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
5678268 AAAATATAAA
5678278 AAACCTT
1 AAACCTT
5678285 AAACCTT
1 AAACCTT
5678292 AAACCTT
1 AAACCTT
*
5678299 AAACCAT
1 AAACCTT
5678306 AAACC
1 AAACC
5678311 CCTAAACTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.21
Consensus pattern (7 bp):
AAACCTT
Found at i:5681208 original size:16 final size:16
Alignment explanation
Indices: 5681158--5681210 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
5681148 TTTCTTCAAC
*
5681158 TTAAACTTAAAATTGAT
1 TTAAATTTAAAA-TGAT
* * **
5681175 TTGAATTCAAAACAAT
1 TTAAATTTAAAATGAT
5681191 TTAAATTTAAAATGAT
1 TTAAATTTAAAATGAT
5681207 TTAA
1 TTAA
5681211 TTCTAAATAA
Statistics
Matches: 27, Mismatches: 9, Indels: 1
0.73 0.24 0.03
Matches are distributed among these distances:
16 18 0.67
17 9 0.33
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.40
Consensus pattern (16 bp):
TTAAATTTAAAATGAT
Found at i:5686899 original size:14 final size:14
Alignment explanation
Indices: 5686864--5686907 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
5686854 AAAAATCCTG
*
5686864 AACCTTGAA-CTCA
1 AACCTTGAACCTTA
*
5686877 AACCATGAACCTTA
1 AACCTTGAACCTTA
*
5686891 AACCTTGAACCCTA
1 AACCTTGAACCTTA
5686905 AAC
1 AAC
5686908 TTTAAAGTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
13 8 0.31
14 18 0.69
ACGTcount: A:0.41, C:0.32, G:0.07, T:0.20
Consensus pattern (14 bp):
AACCTTGAACCTTA
Found at i:5686925 original size:14 final size:14
Alignment explanation
Indices: 5686915--5686944 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
5686905 AACTTTAAAG
5686915 TTTAAGGTTTAAGA
1 TTTAAGGTTTAAGA
*
5686929 TTTAAGGTTCAAGA
1 TTTAAGGTTTAAGA
5686943 TT
1 TT
5686945 CAGTTTTGGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.03, G:0.20, T:0.43
Consensus pattern (14 bp):
TTTAAGGTTTAAGA
Found at i:5687414 original size:27 final size:27
Alignment explanation
Indices: 5687383--5687468 Score: 70
Period size: 27 Copynumber: 3.2 Consensus size: 27
5687373 ACCCTAAAAA
5687383 CATAACAATAAACCATAAACTAGAACC
1 CATAACAATAAACCATAAACTAGAACC
* ***
5687410 CATAACACTAAATTTTAAATCTAGAA--
1 CATAACAATAAACCATAAA-CTAGAACC
* * *
5687436 CTTGAACCATAAACCCTAAACT-GAACC
1 CAT-AACAATAAACCATAAACTAGAACC
5687463 CATAAC
1 CATAAC
5687469 CCTAAATCAT
Statistics
Matches: 44, Mismatches: 11, Indels: 9
0.69 0.17 0.14
Matches are distributed among these distances:
25 3 0.07
26 7 0.16
27 28 0.64
28 6 0.14
ACGTcount: A:0.49, C:0.26, G:0.05, T:0.21
Consensus pattern (27 bp):
CATAACAATAAACCATAAACTAGAACC
Found at i:5687462 original size:19 final size:19
Alignment explanation
Indices: 5687438--5687474 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
5687428 ATCTAGAACT
5687438 TGAA-CCATAAACCCTAAAC
1 TGAACCCAT-AACCCTAAAC
5687457 TGAACCCATAACCCTAAA
1 TGAACCCATAACCCTAAA
5687475 TCATAAGACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.46, C:0.32, G:0.05, T:0.16
Consensus pattern (19 bp):
TGAACCCATAACCCTAAAC
Found at i:5687497 original size:28 final size:28
Alignment explanation
Indices: 5687452--5687530 Score: 83
Period size: 28 Copynumber: 2.9 Consensus size: 28
5687442 CCATAAACCC
* * *
5687452 TAAACTGAACCCAT-AACCCTAAATCA-
1 TAAACTAAAACCATAAACCCTAAATAAT
5687478 TAAGACTAAAACC-TCAAACCCTAAATAAT
1 TAA-ACTAAAACCAT-AAACCCTAAATAAT
*
5687507 TAAATTAAAACCATAAACCCTAAA
1 TAAACTAAAACCATAAACCCTAAA
5687531 CTTAAACACA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
26 4 0.09
27 7 0.16
28 29 0.66
29 4 0.09
ACGTcount: A:0.52, C:0.25, G:0.03, T:0.20
Consensus pattern (28 bp):
TAAACTAAAACCATAAACCCTAAATAAT
Found at i:5687976 original size:28 final size:28
Alignment explanation
Indices: 5687910--5687977 Score: 70
Period size: 28 Copynumber: 2.5 Consensus size: 28
5687900 CCCTAAAGCC
*
5687910 CAAACCATAAA-CTTAGATTAATAACCA
1 CAAACCATAAACCTTAAATTAATAACCA
* *
5687937 TAAATCC-TAAACCTTAAATCTAA-AATCA
1 CAAA-CCATAAACCTTAAAT-TAATAACCA
5687965 CAAACCATAAACC
1 CAAACCATAAACC
5687978 CAAAACCTAG
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
27 9 0.27
28 21 0.64
29 3 0.09
ACGTcount: A:0.51, C:0.25, G:0.01, T:0.22
Consensus pattern (28 bp):
CAAACCATAAACCTTAAATTAATAACCA
Found at i:5688191 original size:7 final size:7
Alignment explanation
Indices: 5688181--5688206 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
5688171 CCTTGAATTC
5688181 TAAACAT
1 TAAACAT
5688188 TAAACAT
1 TAAACAT
5688195 TAAACAT
1 TAAACAT
5688202 TAAAC
1 TAAAC
5688207 CATGAACTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
TAAACAT
Found at i:5688253 original size:28 final size:27
Alignment explanation
Indices: 5688232--5688295 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 27
5688222 TAAAATCTCG
5688232 AACCCTAAATCTAAAACATAAAACCTAA
1 AACCCTAAA-CTAAAACATAAAACCTAA
* *
5688260 AACTCTAAACTTAAACATAAAA-CTATA
1 AACCCTAAACTAAAACATAAAACCTA-A
*
5688287 AACCATAAA
1 AACCCTAAA
5688296 TTTAGAATCA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
26 3 0.10
27 20 0.65
28 8 0.26
ACGTcount: A:0.58, C:0.22, G:0.00, T:0.20
Consensus pattern (27 bp):
AACCCTAAACTAAAACATAAAACCTAA
Found at i:5688275 original size:20 final size:20
Alignment explanation
Indices: 5688252--5688289 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
5688242 CTAAAACATA
* *
5688252 AAACCTAAAACTCTAAACTT
1 AAACATAAAACTATAAACTT
5688272 AAACATAAAACTATAAAC
1 AAACATAAAACTATAAAC
5688290 CATAAATTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.58, C:0.21, G:0.00, T:0.21
Consensus pattern (20 bp):
AAACATAAAACTATAAACTT
Found at i:5688384 original size:27 final size:27
Alignment explanation
Indices: 5688356--5688468 Score: 111
Period size: 27 Copynumber: 4.1 Consensus size: 27
5688346 TCAAACATCT
*
5688356 AACCATAAACACTTAAACCCTAAACCTA
1 AACCATAAAC-CATAAACCCTAAACCTA
* * *
5688384 AACAATAAACAATAAACCATAAAACCTCA
1 AACCATAAACCATAAACCCT-AAACCT-A
* *
5688413 ATCACAT-AACCATCAACCCTAAACCTA
1 AAC-CATAAACCATAAACCCTAAACCTA
* *
5688440 AACCATAAACCATTAACCCTAAATCTA
1 AACCATAAACCATAAACCCTAAACCTA
5688467 AA
1 AA
5688469 ATCACAAACC
Statistics
Matches: 69, Mismatches: 12, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
26 3 0.04
27 30 0.43
28 21 0.30
29 13 0.19
30 2 0.03
ACGTcount: A:0.52, C:0.30, G:0.00, T:0.18
Consensus pattern (27 bp):
AACCATAAACCATAAACCCTAAACCTA
Found at i:5688405 original size:14 final size:14
Alignment explanation
Indices: 5688356--5688406 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 14
5688346 TCAAACATCT
*
5688356 AACCATAAACACTTA
1 AACCATAAACA-ATA
* *
5688371 AACCCTAAAC-CTA
1 AACCATAAACAATA
*
5688384 AACAATAAACAATA
1 AACCATAAACAATA
5688398 AACCATAAA
1 AACCATAAA
5688407 ACCTCAATCA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
13 10 0.34
14 10 0.34
15 9 0.31
ACGTcount: A:0.59, C:0.25, G:0.00, T:0.16
Consensus pattern (14 bp):
AACCATAAACAATA
Found at i:5688457 original size:20 final size:21
Alignment explanation
Indices: 5688356--5688462 Score: 69
Period size: 20 Copynumber: 5.1 Consensus size: 21
5688346 TCAAACATCT
*
5688356 AACCATAAACACTTAAACCCTA
1 AACCATAAAC-CATAAACCCTA
* **
5688378 AACC-TAAACAATAAACAATA
1 AACCATAAACCATAAACCCTA
* *
5688398 AACCATAAAACC-TCAATCAC-A
1 AACCAT-AAACCAT-AAACCCTA
* *
5688419 TAACCATCAACCCTAAA-CCTA
1 -AACCATAAACCATAAACCCTA
*
5688440 AACCATAAACCATTAACCCTA
1 AACCATAAACCATAAACCCTA
5688461 AA
1 AA
5688463 TCTAAAATCA
Statistics
Matches: 65, Mismatches: 13, Indels: 15
0.70 0.14 0.16
Matches are distributed among these distances:
20 25 0.38
21 21 0.32
22 19 0.29
ACGTcount: A:0.52, C:0.31, G:0.00, T:0.17
Consensus pattern (21 bp):
AACCATAAACCATAAACCCTA
Found at i:5688472 original size:56 final size:55
Alignment explanation
Indices: 5688371--5688480 Score: 141
Period size: 56 Copynumber: 2.0 Consensus size: 55
5688361 TAAACACTTA
*
5688371 AACCCTAAACCTAAACAATAAACAATAAACCATAAAACCTCAATCACATAACCATC
1 AACCCTAAACCTAAACAATAAACAATAAACCATAAAACCTAAATCACA-AACCATC
* * * * *
5688427 AACCCTAAACCTAAACCATAAACCATTAACCCT-AAATCTAAAATCACAAACCAT
1 AACCCTAAACCTAAACAATAAACAATAAACCATAAAACCT-AAATCACAAACCAT
5688481 GGACCATAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
55 11 0.23
56 36 0.77
ACGTcount: A:0.52, C:0.31, G:0.00, T:0.17
Consensus pattern (55 bp):
AACCCTAAACCTAAACAATAAACAATAAACCATAAAACCTAAATCACAAACCATC
Found at i:5688607 original size:14 final size:14
Alignment explanation
Indices: 5688590--5688636 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
5688580 CCTTAAACAA
*
5688590 TAAACTATAAAATC
1 TAAACTATAAAACC
*
5688604 TAAACTCTAAAACC
1 TAAACTATAAAACC
*
5688618 TAAAACT-TAAACCC
1 T-AAACTATAAAACC
5688632 TAAAC
1 TAAAC
5688637 CTTTAAATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
13 4 0.14
14 20 0.69
15 5 0.17
ACGTcount: A:0.53, C:0.23, G:0.00, T:0.23
Consensus pattern (14 bp):
TAAACTATAAAACC
Found at i:5688734 original size:28 final size:28
Alignment explanation
Indices: 5688675--5688756 Score: 80
Period size: 28 Copynumber: 2.9 Consensus size: 28
5688665 TCTCAAACCA
* *
5688675 TAAACCATAAACA-TAGAAGCCT-AATCAC
1 TAAACCATAAACACTA-AACCCTAAAT-AT
* *
5688703 TAAACCTTAAAGAC-ACAACCCTAAATAT
1 TAAACCATAAACACTA-AACCCTAAATAT
5688731 TAAACCATAAACACTAAACCCTAAAT
1 TAAACCATAAACACTAAACCCTAAAT
5688757 CCTAAGCCCA
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
28 40 0.91
29 4 0.09
ACGTcount: A:0.51, C:0.26, G:0.04, T:0.20
Consensus pattern (28 bp):
TAAACCATAAACACTAAACCCTAAATAT
Found at i:5688736 original size:14 final size:14
Alignment explanation
Indices: 5688701--5688761 Score: 52
Period size: 14 Copynumber: 4.4 Consensus size: 14
5688691 AAGCCTAATC
* *
5688701 ACTAAACCTTAAAG
1 ACTAAACCCTAAAT
5688715 AC-ACAACCCTAAAT
1 ACTA-AACCCTAAAT
* * *
5688729 ATTAAACCATAAAC
1 ACTAAACCCTAAAT
5688743 ACTAAACCCTAAAT
1 ACTAAACCCTAAAT
*
5688757 CCTAA
1 ACTAA
5688762 GCCCAAACCT
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
13 1 0.03
14 34 0.94
15 1 0.03
ACGTcount: A:0.51, C:0.28, G:0.02, T:0.20
Consensus pattern (14 bp):
ACTAAACCCTAAAT
Found at i:5688820 original size:6 final size:7
Alignment explanation
Indices: 5688731--5688825 Score: 54
Period size: 7 Copynumber: 13.7 Consensus size: 7
5688721 CCCTAAATAT
*
5688731 TAAACCA
1 TAAACCC
*
5688738 TAAACAC
1 TAAACCC
5688745 TAAACCC
1 TAAACCC
*
5688752 TAAATCC
1 TAAACCC
*
5688759 TAAGCCC
1 TAAACCC
*
5688766 -AAACCT
1 TAAACCC
*
5688772 TAAACTC
1 TAAACCC
5688779 -AAACCC
1 TAAACCC
*
5688785 -ATCACCC
1 TA-AACCC
5688792 TAAACCCC
1 TAAA-CCC
* *
5688800 TTTAACCA
1 -TAAACCC
5688808 TAAACCC
1 TAAACCC
5688815 -AAACCC
1 TAAACCC
5688821 TAAAC
1 TAAAC
5688826 TAGTAAACCA
Statistics
Matches: 65, Mismatches: 17, Indels: 12
0.69 0.18 0.13
Matches are distributed among these distances:
6 16 0.25
7 40 0.62
8 6 0.09
9 3 0.05
ACGTcount: A:0.44, C:0.38, G:0.01, T:0.17
Consensus pattern (7 bp):
TAAACCC
Found at i:5693583 original size:164 final size:164
Alignment explanation
Indices: 5693312--5693614 Score: 597
Period size: 164 Copynumber: 1.8 Consensus size: 164
5693302 ACATAAGGGG
5693312 GAATCTCCATTAAGATCAAAGATCTCCTTTTAATTTCTTTCGAAGTTTTATTGAGTTTCTTTATA
1 GAATCTCCATTAAGATCAAAGATCTCCTTTTAATTTCTTTCGAAGTTTTATTGAGTTTCTTTATA
*
5693377 TATTGTGGTTATTTTGATTTTGAGATATTTCTATTCAGGATTATGAACTAAATTCCCTAGATACC
66 TATTGTGGTTATTTTGACTTTGAGATATTTCTATTCAGGATTATGAACTAAATTCCCTAGATACC
5693442 TAGGGAAGAACACCATCGGAATCAACTCGAAAGC
131 TAGGGAAGAACACCATCGGAATCAACTCGAAAGC
5693476 GAATCTCCATTAAGATCAAAGATCTCCTTTTAATTTCTTTCGAAGTTTTATTGAGTTTCTTTATA
1 GAATCTCCATTAAGATCAAAGATCTCCTTTTAATTTCTTTCGAAGTTTTATTGAGTTTCTTTATA
5693541 TATTGTGGTTATTTTGACTTTGAGATATTTCTATTCAGGATTATGAACTAAATTCCCTAGATACC
66 TATTGTGGTTATTTTGACTTTGAGATATTTCTATTCAGGATTATGAACTAAATTCCCTAGATACC
5693606 TAGGGAAGA
131 TAGGGAAGA
5693615 TGAAATCTAT
Statistics
Matches: 138, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
164 138 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.40
Consensus pattern (164 bp):
GAATCTCCATTAAGATCAAAGATCTCCTTTTAATTTCTTTCGAAGTTTTATTGAGTTTCTTTATA
TATTGTGGTTATTTTGACTTTGAGATATTTCTATTCAGGATTATGAACTAAATTCCCTAGATACC
TAGGGAAGAACACCATCGGAATCAACTCGAAAGC
Found at i:5702814 original size:25 final size:25
Alignment explanation
Indices: 5702767--5702838 Score: 62
Period size: 23 Copynumber: 3.0 Consensus size: 25
5702757 ACATACCGCA
* *
5702767 GCTCTTTATGAGCGTTCC-AATATAAG
1 GCTCGTTATGAGC-TTCCTGATAT-AG
5702793 GCTC-TTATGAGCTTCCTGATAT-G
1 GCTCGTTATGAGCTTCCTGATATAG
* *
5702816 GCTCGCT-TGAACTTCCTGATATA
1 GCTCGTTATGAGCTTCCTGATATA
5702839 TAACTATCCG
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
23 19 0.47
24 5 0.12
25 12 0.30
26 4 0.10
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.36
Consensus pattern (25 bp):
GCTCGTTATGAGCTTCCTGATATAG
Found at i:5707747 original size:7 final size:7
Alignment explanation
Indices: 5707735--5707760 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
5707725 GGGCTATTTA
5707735 ATTTTGG
1 ATTTTGG
5707742 ATTTTGG
1 ATTTTGG
5707749 ATTTTGG
1 ATTTTGG
5707756 ATTTT
1 ATTTT
5707761 ATAACTGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.23, T:0.62
Consensus pattern (7 bp):
ATTTTGG
Found at i:5709473 original size:20 final size:20
Alignment explanation
Indices: 5709448--5709486 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
5709438 TAAATTTCAA
*
5709448 ATATAAATTATTCATTAATT
1 ATATAAATTACTCATTAATT
5709468 ATATAAATTACTCATTAAT
1 ATATAAATTACTCATTAAT
5709487 AAGCTCAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (20 bp):
ATATAAATTACTCATTAATT
Found at i:5711004 original size:159 final size:159
Alignment explanation
Indices: 5710708--5711327 Score: 981
Period size: 159 Copynumber: 3.9 Consensus size: 159
5710698 AACGAGAACG
* * *
5710708 TGGTGGAGAAAAGAAAGGAATAGAAGGAATTACAGTTGGGATTATGGGGACTGAGGGAATGCTTG
1 TGGTGGAGAAAAGAAAGGAATAGAGGGAATTGCAGTTGGGATTGTGGGGACTGAGGGAATGCTTG
* * * *
5710773 GCACAGGGGGCAGTGTGGCCCTTGGTCCACTTGGAAATATGGTAGAAAGTGGAGGAAGTGCCCTA
66 GCAGAGGGGGCAGTGTGGCCCTTGGTCCACTTGGAAATATGGTAGGAAGTGGAGGAAGCGCCCCA
*
5710838 GGGTTTGGGAGATTAGGGAAAGATGGCAA
131 GGCTTTGGGAGATTAGGGAAAGATGGCAA
* *
5710867 TGGTGGAGAAGAGAAAGGAATAGAGGGAATTGCAGTTGGGATTGTGGGGACTAAGGGAATGCTTG
1 TGGTGGAGAAAAGAAAGGAATAGAGGGAATTGCAGTTGGGATTGTGGGGACTGAGGGAATGCTTG
5710932 GCAGAGGGGGCAGTGTGGCCCTTGGTCCACTTGGAAATATGGTAGGAAGTGGAGGAAGCGCCCCA
66 GCAGAGGGGGCAGTGTGGCCCTTGGTCCACTTGGAAATATGGTAGGAAGTGGAGGAAGCGCCCCA
*
5710997 GGATTTGGGAGATTAGGGAAAGATGGCAA
131 GGCTTTGGGAGATTAGGGAAAGATGGCAA
* *
5711026 TGGTGGA-AAAGAGAAAGGAATCGAGGGAATTGCAGTTGGGATTGTGGGGATTGAGGGAATGCTT
1 TGGTGGAGAAA-AGAAAGGAATAGAGGGAATTGCAGTTGGGATTGTGGGGACTGAGGGAATGCTT
* * *
5711090 GGCAGAGGGGGCAGTGTGGCCTTTGGTCCACTTGGAAATATGGTAGGAAGTGGAGGTAGTGCCCC
65 GGCAGAGGGGGCAGTGTGGCCCTTGGTCCACTTGGAAATATGGTAGGAAGTGGAGGAAGCGCCCC
*
5711155 AGGCTTTGGGAGATTAGGGAAAGATGGAAA
130 AGGCTTTGGGAGATTAGGGAAAGATGGCAA
* * ** *
5711185 TGGTGGAGAAAATAAATTAGCAATAGAGGGAATTGCAGTTGGGATTCCGGGGATTGAGGGAATGC
1 TGGTGGAGAAAA-GAA--AGGAATAGAGGGAATTGCAGTTGGGATTGTGGGGACTGAGGGAATGC
*
5711250 TTGGCAGAGGGGGCAGTGTGGCCTTTGGTCCACTTGGAAATATGGTAGGAAGTGGAGGAAGCGCC
63 TTGGCAGAGGGGGCAGTGTGGCCCTTGGTCCACTTGGAAATATGGTAGGAAGTGGAGGAAGCGCC
*
5711315 CCAAGCTTTGGGA
128 CCAGGCTTTGGGA
5711328 ATGAGGGTAT
Statistics
Matches: 429, Mismatches: 27, Indels: 7
0.93 0.06 0.02
Matches are distributed among these distances:
158 2 0.00
159 304 0.71
160 5 0.01
162 118 0.28
ACGTcount: A:0.28, C:0.11, G:0.40, T:0.21
Consensus pattern (159 bp):
TGGTGGAGAAAAGAAAGGAATAGAGGGAATTGCAGTTGGGATTGTGGGGACTGAGGGAATGCTTG
GCAGAGGGGGCAGTGTGGCCCTTGGTCCACTTGGAAATATGGTAGGAAGTGGAGGAAGCGCCCCA
GGCTTTGGGAGATTAGGGAAAGATGGCAA
Found at i:5712992 original size:17 final size:17
Alignment explanation
Indices: 5712960--5712993 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
5712950 ATTTCCCCTT
* *
5712960 AATCCCAATCCTACAAA
1 AATCCCAATACAACAAA
5712977 AATCCCAATACAACAAA
1 AATCCCAATACAACAAA
5712994 CCTCAAAAAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.53, C:0.32, G:0.00, T:0.15
Consensus pattern (17 bp):
AATCCCAATACAACAAA
Found at i:5716560 original size:10 final size:10
Alignment explanation
Indices: 5716545--5716573 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
5716535 CTAAATTCTA
5716545 AAAGATAAAT
1 AAAGATAAAT
5716555 AAAGATAAAT
1 AAAGATAAAT
5716565 AAAGATAAA
1 AAAGATAAA
5716574 AGCTAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.17
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:5717438 original size:109 final size:111
Alignment explanation
Indices: 5717237--5717439 Score: 311
Period size: 109 Copynumber: 1.8 Consensus size: 111
5717227 TTTTTTATGT
5717237 TTTTCTTTGCTTAAGAATATATTGAACCTTTTGACGCGAAGAGAAATGACAACCAATCACCCCAC
1 TTTTCTTTGCTTAAGAATATATTGAACCTTTTGACGCGAAGAGAAATGACAACCAATCACCCCAC
** *
5717302 CCTGGTTACTCAGCCCAACATACTCCTAATTTATTATATTTATATA
66 CCCAGTTAATCAGCCCAACATACTCCTAATTTATTATATTTATATA
* * *
5717348 TTTT-TTT-CTTAAGAATATATTGAACCTTTTGACGCGAGGAGAGATGACAACCAATCACCCTAC
1 TTTTCTTTGCTTAAGAATATATTGAACCTTTTGACGCGAAGAGAAATGACAACCAATCACCCCAC
* * *
5717411 CCCAGTTAATTAGCCCAACGTATTCCTAA
66 CCCAGTTAATCAGCCCAACATACTCCTAA
5717440 AATTTTTTTG
Statistics
Matches: 83, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
109 76 0.92
110 3 0.04
111 4 0.05
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (111 bp):
TTTTCTTTGCTTAAGAATATATTGAACCTTTTGACGCGAAGAGAAATGACAACCAATCACCCCAC
CCCAGTTAATCAGCCCAACATACTCCTAATTTATTATATTTATATA
Found at i:5718429 original size:19 final size:19
Alignment explanation
Indices: 5718405--5718451 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
5718395 TAGAAGAAAG
5718405 GGTGTTTGGCTATAAGGTA
1 GGTGTTTGGCTATAAGGTA
*
5718424 GGTGTTTGGCTATAGGGTA
1 GGTGTTTGGCTATAAGGTA
5718443 GGTGTTTGG
1 GGTGTTTGG
5718452 ATGCATATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.15, C:0.04, G:0.43, T:0.38
Consensus pattern (19 bp):
GGTGTTTGGCTATAAGGTA
Found at i:5718627 original size:20 final size:19
Alignment explanation
Indices: 5718602--5718642 Score: 64
Period size: 20 Copynumber: 2.1 Consensus size: 19
5718592 TTAATATCCA
*
5718602 AATAAAATAAAGTAATAAAT
1 AATAAAATAAAATAA-AAAT
5718622 AATAAAATAAAATAAAAAT
1 AATAAAATAAAATAAAAAT
5718641 AA
1 AA
5718643 AGAAAAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (19 bp):
AATAAAATAAAATAAAAAT
Found at i:5718643 original size:16 final size:16
Alignment explanation
Indices: 5718601--5718656 Score: 60
Period size: 16 Copynumber: 3.2 Consensus size: 16
5718591 ATTAATATCC
5718601 AAATAAAATAAAGTAATAA
1 AAATAAAAT-AA--AATAA
5718620 ATAATAAAATAAAATAA
1 A-AATAAAATAAAATAA
5718637 AAATAAAGA-AAAATAA
1 AAATAAA-ATAAAATAA
5718653 AAAT
1 AAAT
5718657 TGGGTTGCCT
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
16 17 0.49
17 7 0.20
19 3 0.09
20 8 0.23
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.20
Consensus pattern (16 bp):
AAATAAAATAAAATAA
Found at i:5718648 original size:20 final size:21
Alignment explanation
Indices: 5718605--5718654 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
5718595 ATATCCAAAT
* *
5718605 AAAATAAAGTAATAAATAA-T
1 AAAATAAAATAATAAATAAGA
5718625 AAAATAAAATAA-AAATAAAGA
1 AAAATAAAATAATAAAT-AAGA
5718646 AAAATAAAA
1 AAAATAAAA
5718655 ATTGGGTTGC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 4 0.15
20 13 0.50
21 9 0.35
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.18
Consensus pattern (21 bp):
AAAATAAAATAATAAATAAGA
Found at i:5721381 original size:155 final size:155
Alignment explanation
Indices: 5721099--5721406 Score: 580
Period size: 155 Copynumber: 2.0 Consensus size: 155
5721089 TGTTTGAGCC
* * *
5721099 ATAGGTTGATGTGCTAGATTCGGGTTTTCGTTAACCCTAGCATTAAGCATTTCTTCTGGTGGATT
1 ATAGGTTGATGTGCTAGATTCAGGTTTTCGTTAACCCTAGCATTAAGCATTTCTTCTAGTGGATC
5721164 GACTCTTAGCCTTTCGTTCTCCAATGTTTGAGTAGGGTTTTTGTTAACCCTAAACTTAACTTCAT
66 GACTCTTAGCCTTTCGTTCTCCAATGTTTGAGTAGGGTTTTTGTTAACCCTAAACTTAACTTCAT
5721229 TGCCTGCTTCTATTTCCGGCGGTCT
131 TGCCTGCTTCTATTTCCGGCGGTCT
5721254 ATAGGTTGATGTGCTAGATTCAGGTTTTCGTTAACCCTAGCATTAAGCATTTCTTCTAGTGGATC
1 ATAGGTTGATGTGCTAGATTCAGGTTTTCGTTAACCCTAGCATTAAGCATTTCTTCTAGTGGATC
*
5721319 GACTCTTAGTCTTTCGTTCTCCAATGTTTGAGTAGGGTTTTTGTTAACCCTAAACTTAACTTCAT
66 GACTCTTAGCCTTTCGTTCTCCAATGTTTGAGTAGGGTTTTTGTTAACCCTAAACTTAACTTCAT
5721384 TGCCTGCTTCTATTTCCGGCGGT
131 TGCCTGCTTCTATTTCCGGCGGT
5721407 GGGTTACTCT
Statistics
Matches: 149, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
155 149 1.00
ACGTcount: A:0.19, C:0.20, G:0.20, T:0.41
Consensus pattern (155 bp):
ATAGGTTGATGTGCTAGATTCAGGTTTTCGTTAACCCTAGCATTAAGCATTTCTTCTAGTGGATC
GACTCTTAGCCTTTCGTTCTCCAATGTTTGAGTAGGGTTTTTGTTAACCCTAAACTTAACTTCAT
TGCCTGCTTCTATTTCCGGCGGTCT
Found at i:5724716 original size:10 final size:9
Alignment explanation
Indices: 5724677--5724838 Score: 62
Period size: 9 Copynumber: 17.2 Consensus size: 9
5724667 TGTGACAGAG
*
5724677 AAATGATAA
1 AAATTATAA
**
5724686 AAAAAATAA
1 AAATTATAA
*
5724695 AAATCAATAA
1 AAAT-TATAA
*
5724705 AAGTTATAA
1 AAATTATAA
5724714 AAATTATAA
1 AAATTATAA
* *
5724723 AAATTGT-T
1 AAATTATAA
*
5724731 AAATTTTAATA
1 AAATTAT-A-A
5724742 AAATTATAA
1 AAATTATAA
*
5724751 AAA-TATTTA
1 AAATTA-TAA
*
5724760 AAATTAGAAAA
1 AAATT--ATAA
5724771 AAATTATAA
1 AAATTATAA
*
5724780 AACTCGTA-AA
1 AAAT--TATAA
*
5724790 AAAATATAA
1 AAATTATAA
* *
5724799 AAACTGTAA
1 AAATTATAA
*
5724808 AATTTTATAA
1 AA-ATTATAA
5724818 AAAGTGTA-AA
1 AAA-T-TATAA
5724828 AAATTATAA
1 AAATTATAA
5724837 AA
1 AA
5724839 TATATAGAAA
Statistics
Matches: 114, Mismatches: 24, Indels: 30
0.68 0.14 0.18
Matches are distributed among these distances:
8 12 0.11
9 59 0.52
10 26 0.23
11 16 0.14
12 1 0.01
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (9 bp):
AAATTATAA
Found at i:5724733 original size:19 final size:19
Alignment explanation
Indices: 5724711--5724838 Score: 66
Period size: 19 Copynumber: 6.7 Consensus size: 19
5724701 ATAAAAGTTA
5724711 TAAAAATTATAAAAATTGT
1 TAAAAATTATAAAAATTGT
** *
5724730 TAAATTTTA-ATAAAATT-A
1 TAAAAATTATA-AAAATTGT
* *
5724748 TAAAAA-TATTTAAAATTAGA
1 TAAAAATTA-TAAAAATT-GT
* * *
5724768 AAAAAATTATAAAACTCGT
1 TAAAAATTATAAAAATTGT
* * *
5724787 AAAAAAATATAAAAACTG-
1 TAAAAATTATAAAAATTGT
* *
5724805 TAAAATTTTATAAAAAGTGT
1 TAAAA-ATTATAAAAATTGT
*
5724825 AAAAAATTATAAAA
1 TAAAAATTATAAAA
5724839 TATATAGAAA
Statistics
Matches: 80, Mismatches: 21, Indels: 16
0.68 0.18 0.14
Matches are distributed among these distances:
17 2 0.03
18 15 0.19
19 46 0.57
20 15 0.19
21 2 0.03
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (19 bp):
TAAAAATTATAAAAATTGT
Found at i:5724742 original size:29 final size:29
Alignment explanation
Indices: 5724710--5724781 Score: 87
Period size: 28 Copynumber: 2.5 Consensus size: 29
5724700 AATAAAAGTT
*
5724710 ATAAAAATTATAAAAAT-TGTTAAATTTTA-
1 ATAAAAATTATAAAAATAT-TTAAA-ATTAG
5724739 AT-AAAATTATAAAAATATTTAAAATTAG
1 ATAAAAATTATAAAAATATTTAAAATTAG
*
5724767 AAAAAAATTATAAAA
1 ATAAAAATTATAAAA
5724782 CTCGTAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
27 3 0.08
28 20 0.53
29 15 0.39
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (29 bp):
ATAAAAATTATAAAAATATTTAAAATTAG
Found at i:5724772 original size:20 final size:21
Alignment explanation
Indices: 5724749--5724809 Score: 67
Period size: 20 Copynumber: 3.1 Consensus size: 21
5724739 ATAAAATTAT
* *
5724749 AAAAATATTTAAAATTAG-AA
1 AAAAATATATAAAACTAGTAA
*
5724769 AAAAAT-TATAAAACTCGTAA
1 AAAAATATATAAAACTAGTAA
5724789 AAAAATATA-AAAACT-GTAA
1 AAAAATATATAAAACTAGTAA
5724808 AA
1 AA
5724810 TTTTATAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
19 14 0.39
20 20 0.56
21 2 0.06
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.25
Consensus pattern (21 bp):
AAAAATATATAAAACTAGTAA
Found at i:5724789 original size:28 final size:28
Alignment explanation
Indices: 5724712--5724790 Score: 86
Period size: 29 Copynumber: 2.8 Consensus size: 28
5724702 TAAAAGTTAT
* **
5724712 AAAAATTATAAAAATTGTTAAATTTTAA
1 AAAAATTATAAAAATTGTAAAATTAGAA
* *
5724740 TAAAATTATAAAAATATTTAAAATTAGAA
1 AAAAATTATAAAAAT-TGTAAAATTAGAA
* *
5724769 AAAAATTATAAAACTCGTAAAA
1 AAAAATTATAAAAATTGTAAAA
5724791 AAATATAAAA
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 19 0.46
29 22 0.54
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.33
Consensus pattern (28 bp):
AAAAATTATAAAAATTGTAAAATTAGAA
Found at i:5725175 original size:31 final size:31
Alignment explanation
Indices: 5725131--5725214 Score: 111
Period size: 31 Copynumber: 2.8 Consensus size: 31
5725121 TTTGTTATGA
5725131 TTTTTA-TAAAATTTTATAATTTTTAATAAT
1 TTTTTATTAAAATTTTATAATTTTTAATAAT
* *
5725161 TTTTTATTAAAATTTAATAATTTTTTATAAT
1 TTTTTATTAAAATTTTATAATTTTTAATAAT
**
5725192 TTTTT-TT-ATTTTTTATAATTTTT
1 TTTTTATTAAAATTTTATAATTTTT
5725215 TTCCACATGT
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
29 13 0.27
30 8 0.17
31 27 0.56
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (31 bp):
TTTTTATTAAAATTTTATAATTTTTAATAAT
Found at i:5725215 original size:10 final size:10
Alignment explanation
Indices: 5725113--5725215 Score: 93
Period size: 10 Copynumber: 10.4 Consensus size: 10
5725103 TTTTGATGCA
*
5725113 TTTTAGAATT
1 TTTTATAATT
* *
5725123 TGTTATGA-T
1 TTTTATAATT
**
5725132 TTTTATAAAA
1 TTTTATAATT
5725142 TTTTATAATT
1 TTTTATAATT
*
5725152 TTTAATAATT
1 TTTTATAATT
**
5725162 TTTTATTAAAA
1 TTTTA-TAATT
*
5725173 TTTAATAATT
1 TTTTATAATT
5725183 TTTTATAATT
1 TTTTATAATT
*
5725193 TTTT-TTATT
1 TTTTATAATT
5725202 TTTTATAATT
1 TTTTATAATT
5725212 TTTT
1 TTTT
5725216 TCCACATGTC
Statistics
Matches: 72, Mismatches: 18, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
9 15 0.21
10 50 0.69
11 7 0.10
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (10 bp):
TTTTATAATT
Found at i:5725215 original size:19 final size:19
Alignment explanation
Indices: 5725180--5725216 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
5725170 AAATTTAATA
5725180 ATTTTTTATAATTTTTTTT
1 ATTTTTTATAATTTTTTTT
5725199 ATTTTTTATAATTTTTTT
1 ATTTTTTATAATTTTTTT
5725217 CCACATGTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (19 bp):
ATTTTTTATAATTTTTTTT
Found at i:5727482 original size:5 final size:5
Alignment explanation
Indices: 5727433--5727466 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
5727423 AATATGAAAA
5727433 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAA
5727467 ATTATAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
ATAAT
Found at i:5733425 original size:23 final size:23
Alignment explanation
Indices: 5733399--5733447 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
5733389 GCGTATCTTA
* *
5733399 TAATATCCCGAAAATTACTACTG
1 TAATACCCCGAAAATTACTACAG
5733422 TAATACCCCGAAAATTACTACAG
1 TAATACCCCGAAAATTACTACAG
5733445 TAA
1 TAA
5733448 GAAAGTAGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.27
Consensus pattern (23 bp):
TAATACCCCGAAAATTACTACAG
Found at i:5741174 original size:20 final size:20
Alignment explanation
Indices: 5741145--5741186 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
5741135 CACGTATCCT
*
5741145 AATTTTATTTGATTCTAATC
1 AATTTGATTTGATTCTAATC
*
5741165 AATTTGATTTGATTTTAATC
1 AATTTGATTTGATTCTAATC
5741185 AA
1 AA
5741187 ATAGATTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.52
Consensus pattern (20 bp):
AATTTGATTTGATTCTAATC
Found at i:5741193 original size:20 final size:20
Alignment explanation
Indices: 5741151--5741194 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
5741141 TCCTAATTTT
* *
5741151 ATTTGATTCTAATCAATTTG
1 ATTTGATTCTAATCAAATAG
*
5741171 ATTTGATTTTAATCAAATAG
1 ATTTGATTCTAATCAAATAG
5741191 ATTT
1 ATTT
5741195 AATTGCTCCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.07, G:0.09, T:0.50
Consensus pattern (20 bp):
ATTTGATTCTAATCAAATAG
Found at i:5741936 original size:87 final size:87
Alignment explanation
Indices: 5741812--5742376 Score: 649
Period size: 87 Copynumber: 6.5 Consensus size: 87
5741802 TTGAAAATAA
** * * *
5741812 ATATTAAAATTAAATAAAATCTATTTCGACATTTATTCTCGCCGTTCAACAGATTTTATTTCATA
1 ATATTAAAATTAAATAAAATCTATTTCGAGTTTTATTCCCGCCGTTCAACAGATTTTATTCCATT
5741877 TTTTATTTTGTTTCCAAACAAG
66 TTTTATTTTGTTTCCAAACAAG
* *
5741899 -TATTAAAATTAAATAAAACTCTATTTCGAGATTTATTCCCCCCGTTCAACAGATTTTATTCCAT
1 ATATTAAAATTAAATAAAA-TCTATTTCGAGTTTTATTCCCGCCGTTCAACAGATTTTATTCCA-
* **
5741963 TTTTTTCTTTTGTTTCCAAATGAG
64 TTTTTTATTTTGTTTCCAAACAAG
* * * * * *
5741987 -TATTAAACTAAAATAAAATCTATTTCGGGGTTTATTCCTGTCGTTCAACAGATTTTATTCCATT
1 ATATTAAAATTAAATAAAATCTATTTCGAGTTTTATTCCCGCCGTTCAACAGATTTTATTCCA--
5742051 TTTTTTATTTTGTTTCCAAACAAG
64 TTTTTTATTTTGTTTCCAAACAAG
* * *
5742075 -TATTAAAATTAAATAAAATCTATTTTGGGTTTTATTCCCGCCGTTCAACAGATTTTATTTCATT
1 ATATTAAAATTAAATAAAATCTATTTCGAGTTTTATTCCCGCCGTTCAACAGATTTTATTCCATT
*
5742139 TTTTATTTTGTTGT-CAAACGAG
66 TTTTATTTTGTT-TCCAAACAAG
* * * * * * *
5742161 AAATTAAAATTAAATAAAATCTGTTTTGGGTTTTATTCCCGCCGTTAAATAGACTTTATTCCATT
1 ATATTAAAATTAAATAAAATCTATTTCGAGTTTTATTCCCGCCGTTCAACAGATTTTATTCCATT
*
5742226 TTTTATTTTGTTGCCAAA-AGAG
66 TTTTATTTTGTTTCCAAACA-AG
* * * * ** *
5742248 AAATTAAAATTAAATAAAATATGTTTC-AGGTTTTATTCTCGTTGTTCAATAGATTTTATTCCAT
1 ATATTAAAATTAAATAAAATCTATTTCGA-GTTTTATTCCCGCCGTTCAACAGATTTTATTCCAT
* *
5742312 TTTTTATTTT-TTGCCAAACGAG
65 TTTTTATTTTGTTTCCAAACAAG
* * * *
5742334 AAATTAAAATTAAATAAAATTTGTTTCGGGTTTTATTCCCGCC
1 ATATTAAAATTAAATAAAATCTATTTCGAGTTTTATTCCCGCC
5742377 TTTATTCCAT
Statistics
Matches: 420, Mismatches: 48, Indels: 21
0.86 0.10 0.04
Matches are distributed among these distances:
86 86 0.20
87 221 0.53
88 113 0.27
ACGTcount: A:0.32, C:0.14, G:0.10, T:0.44
Consensus pattern (87 bp):
ATATTAAAATTAAATAAAATCTATTTCGAGTTTTATTCCCGCCGTTCAACAGATTTTATTCCATT
TTTTATTTTGTTTCCAAACAAG
Found at i:5742150 original size:174 final size:174
Alignment explanation
Indices: 5741814--5742551 Score: 691
Period size: 174 Copynumber: 4.3 Consensus size: 174
5741804 GAAAATAAAT
* ** * *
5741814 ATTAAAATTAAATAAAATCTATTTCGACATTTATT-CTCGCCGTTCAACAGATTTTATTTCATAT
1 ATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCT-GCCGTTCAACAGATTTTATTCCATTT
* * *
5741878 TTTATTTTGTTTCCAAACAAG-TATTAAAATTAAATAAAACTCTATTTCGAGATTTATTCCCCCC
65 TTTATTTTGTTTCCAAACAAGAAATTAAAATTAAATAAAA-TCTATTTCGGGATTTATTCCCGCC
* * *
5741942 GTTCAACAGATTTTATTCCATTTTTTTCTTTTGTTTCCAAATGAG-T
129 GTTCAACAGATTTTATTCCA-TTTTTTATTTTGTTTCCAAACGAGAA
* * * * *
5741988 ATTAAACTAAAATAAAATCTATTTCGGGGTTTATTCCTGTCGTTCAACAGATTTTATTCCATTTT
1 ATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCTGCCGTTCAACAGATTTTATTCCA--TT
* * *
5742053 TTTTATTTTGTTTCCAAACAAG-TATTAAAATTAAATAAAATCTATTTTGGGTTTTATTCCCGCC
64 TTTTATTTTGTTTCCAAACAAGAAATTAAAATTAAATAAAATCTATTTCGGGATTTATTCCCGCC
*
5742117 GTTCAACAGATTTTATTTCATTTTTTATTTTGTTGT-CAAACGAGAA
129 GTTCAACAGATTTTATTCCATTTTTTATTTTGTT-TCCAAACGAGAA
* * * * * *
5742163 ATTAAAATTAAATAAAATCTGTTTTGGGTTTTATTCCCGCCGTTAAATAGACTTTATTCCATTTT
1 ATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCTGCCGTTCAACAGATTTTATTCCATTTT
* * * * * * **
5742228 TTATTTTGTTGCCAAA-AGAGAAATTAAAATTAAATAAAATATGTTTCAGGTTTTATTCTCGTTG
66 TTATTTTGTTTCCAAACA-AGAAATTAAAATTAAATAAAATCTATTTCGGGATTTATTCCCGCCG
* *
5742292 TTCAATAGATTTTATTCCATTTTTTATTTT-TTGCCAAACGAGAA
130 TTCAACAGATTTTATTCCATTTTTTATTTTGTTTCCAAACGAGAA
* *
5742336 ATTAAAATTAAATAAAATTTGTTTCGGGTTTTATT-C--CCG--C--C----TTTATTCCATTTT
1 ATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCTGCCGTTCAACAGATTTTATTCCA-TTT
* * * * * *
5742390 TTTATTTT-TTTCTAAACGAGAAATTTAAATTAAATAAAATCT-GTTCTGGGATTTAATCTCGCC
65 TTTATTTTGTTTCCAAACAAGAAATTAAAATTAAATAAAATCTATTTC-GGGATTTATTCCCGCC
* * * * * * **
5742453 GTTTAATAGAATTTATTCGA-TTTTAATTTTGTTTCTAAATTAG-A
129 GTTCAACAGATTTTATTCCATTTTTTATTTTGTTTCCAAACGAGAA
** * * *
5742497 ATT-AAATCGAAT--AATCTGTTTCGAGATTTATT-CTCGTCGTTTAACAGATTTTATT
1 ATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCT-GCCGTTCAACAGATTTTATT
5742552 AGATCTTGAT
Statistics
Matches: 473, Mismatches: 68, Indels: 51
0.80 0.11 0.09
Matches are distributed among these distances:
158 18 0.04
160 7 0.01
161 18 0.04
162 73 0.15
163 11 0.02
165 1 0.00
169 6 0.01
170 3 0.01
172 2 0.00
173 66 0.14
174 134 0.28
175 93 0.20
176 41 0.09
ACGTcount: A:0.31, C:0.13, G:0.10, T:0.45
Consensus pattern (174 bp):
ATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCTGCCGTTCAACAGATTTTATTCCATTTT
TTATTTTGTTTCCAAACAAGAAATTAAAATTAAATAAAATCTATTTCGGGATTTATTCCCGCCGT
TCAACAGATTTTATTCCATTTTTTATTTTGTTTCCAAACGAGAA
Found at i:5742285 original size:262 final size:257
Alignment explanation
Indices: 5741812--5742551 Score: 762
Period size: 262 Copynumber: 2.9 Consensus size: 257
5741802 TTGAAAATAA
*** *
5741812 ATATTAAAATTAAATAAAATCTATTTCGACATTTATTCTCGCCGTTCAACAGATTTTATTTCATA
1 ATATTAAAATTAAATAAAATCTATTTCGGGTTTTATTC-CGCCGTTCAACAGATTTTATTTCATT
* * * * * *
5741877 TTTTATTTTGTTTCCAAACAAG-TATTAAAATTAAATAAAACTCTATTTCGAGATTTATTCCCCC
65 TTTTATTTTGTTT-CAAACGAGAAATTAAAATTAAATAAAA-TCTGTTTTGGGATTTATTCCCGC
* * * * * * * *
5741941 CGTTCAACAGATTTTATTCCATTTTTTTCTTTTGTTTCCAAATGAGTATTAAACTAAAATAAAAT
128 CGTTAAATAGAATTTATTCCA-TTTTTTATTTTGTTGCCAAAAGAGAATTAAAATAAAATAAAAT
* * *
5742006 CTATTTCGGGGTTTATTC-CTGTCGTTCAACAGATTTTATTCCATTTTTTTTATTTTGTTTCCAA
192 ATATTTCAGGGTTTATTCTC-GTCGTTCAACAGATTTTATTCCA--TTTTTTATTTT-TTGCCAA
5742070 ACAAG
253 ACAAG
*
5742075 -TATTAAAATTAAATAAAATCTATTTTGGGTTTTATTCCCGCCGTTCAACAGATTTTATTTCATT
1 ATATTAAAATTAAATAAAATCTATTTCGGGTTTTATT-CCGCCGTTCAACAGATTTTATTTCATT
*
5742139 TTTTATTTTGTTGTCAAACGAGAAATTAAAATTAAATAAAATCTGTTTTGGGTTTTATTCCCGCC
65 TTTTATTTTGTT-TCAAACGAGAAATTAAAATTAAATAAAATCTGTTTTGGGATTTATTCCCGCC
* *
5742204 GTTAAATAGACTTTATTCCATTTTTTATTTTGTTGCCAAAAGAGAAATTAAAATTAAATAAAATA
129 GTTAAATAGAATTTATTCCATTTTTTATTTTGTTGCCAAAAGAG-AATTAAAATAAAATAAAATA
* * * * *
5742269 TGTTTCAGGTTTTATTCTCGTTGTTCAATAGATTTTATTCCATTTTTTATTTTTTGCCAAACGAG
193 TATTTCAGGGTTTATTCTCGTCGTTCAACAGATTTTATTCCATTTTTTATTTTTTGCCAAACAAG
* * * *
5742334 AAATTAAAATTAAATAAAATTTGTTTCGGGTTTTATT-C-CCG--C--C----TTTATTCCATTT
1 ATATTAAAATTAAATAAAATCTATTTCGGGTTTTATTCCGCCGTTCAACAGATTTTATTTCA-TT
* * * *
5742389 TTTTATTTT-TTTCTAAACGAGAAATTTAAATTAAATAAAATCTGTTCTGGGATTTAATCTCGCC
65 TTTTATTTTGTTTC-AAACGAGAAATTAAAATTAAATAAAATCTGTTTTGGGATTTATTCCCGCC
* * * * * ** ** *
5742453 GTTTAATAGAATTTATTCGA-TTTTAATTTTGTTTCTAAATTAGAATT-AAATCGAAT--AATCT
129 GTTAAATAGAATTTATTCCATTTTTTATTTTGTTGCCAAAAGAGAATTAAAATAAAATAAAATAT
* * *
5742514 GTTTC-GAGATTTATTCTCGTCGTTTAACAGATTTTATT
194 ATTTCAG-GGTTTATTCTCGTCGTTCAACAGATTTTATT
5742552 AGATCTTGAT
Statistics
Matches: 414, Mismatches: 54, Indels: 37
0.82 0.11 0.07
Matches are distributed among these distances:
243 1 0.00
244 36 0.09
246 7 0.02
247 4 0.01
248 20 0.05
249 72 0.17
250 11 0.03
253 1 0.00
255 1 0.00
257 3 0.01
258 1 0.00
259 10 0.02
260 43 0.10
261 21 0.05
262 163 0.39
263 20 0.05
ACGTcount: A:0.31, C:0.13, G:0.10, T:0.45
Consensus pattern (257 bp):
ATATTAAAATTAAATAAAATCTATTTCGGGTTTTATTCCGCCGTTCAACAGATTTTATTTCATTT
TTTATTTTGTTTCAAACGAGAAATTAAAATTAAATAAAATCTGTTTTGGGATTTATTCCCGCCGT
TAAATAGAATTTATTCCATTTTTTATTTTGTTGCCAAAAGAGAATTAAAATAAAATAAAATATAT
TTCAGGGTTTATTCTCGTCGTTCAACAGATTTTATTCCATTTTTTATTTTTTGCCAAACAAG
Found at i:5742532 original size:82 final size:82
Alignment explanation
Indices: 5742439--5742623 Score: 194
Period size: 82 Copynumber: 2.3 Consensus size: 82
5742429 TCTGTTCTGG
* * * * * **
5742439 GATTTAATCTCGCCGTTTAATAGAATTTATTCGATTTTAATTTTGTTTCTAAA-TTAGAATTAAA
1 GATTTATTCTCGCCGTTTAACAGAATTTATTAGATCTTAA-TTTGTTTCCAAACGAAGAATT-AA
* * *
5742503 TCGAATAA-TCTGTTTCGA
64 TCAAAGAATTATGTTTCGA
* * * *
5742521 GATTTATTCTCGTCGTTTAACAGATTTTATTAGATCTTGATTTGTTTCCAAACGAAGACTTAATC
1 GATTTATTCTCGCCGTTTAACAGAATTTATTAGATCTTAATTTGTTTCCAAACGAAGAATTAATC
*
5742586 AAAGAATTATGTTTCGG
66 AAAGAATTATGTTTCGA
*
5742603 GATTTATTCCCGCCGTTTAAC
1 GATTTATTCTCGCCGTTTAAC
5742624 CAATTTTATT
Statistics
Matches: 84, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
81 19 0.23
82 65 0.77
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (82 bp):
GATTTATTCTCGCCGTTTAACAGAATTTATTAGATCTTAATTTGTTTCCAAACGAAGAATTAATC
AAAGAATTATGTTTCGA
Found at i:5745841 original size:28 final size:30
Alignment explanation
Indices: 5745803--5745872 Score: 90
Period size: 30 Copynumber: 2.3 Consensus size: 30
5745793 GTATCTAACA
* *
5745803 ATTTAAATATAAATTATTTAATTTTTATTT-T
1 ATTTATATATAAA-TATTT-ATTTATATTTAT
5745834 ATTT-TATATAAATATTTATTTATATTTAT
1 ATTTATATATAAATATTTATTTATATTTAT
5745863 ATTTATATAT
1 ATTTATATAT
5745873 CTTGTTTGCT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
28 9 0.26
29 10 0.29
30 12 0.34
31 4 0.11
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (30 bp):
ATTTATATATAAATATTTATTTATATTTAT
Found at i:5745865 original size:12 final size:11
Alignment explanation
Indices: 5745816--5745870 Score: 51
Period size: 12 Copynumber: 4.9 Consensus size: 11
5745806 TAAATATAAA
5745816 TTATTTA-ATTT
1 TTATTTATA-TT
5745827 TTATTT-TATT
1 TTATTTATATT
* *
5745837 TTATATAAATAT
1 TTATTTATAT-T
5745849 TTATTTATATT
1 TTATTTATATT
5745860 TATATTTATAT
1 T-TATTTATAT
5745871 ATCTTGTTTG
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
10 7 0.19
11 11 0.31
12 18 0.50
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (11 bp):
TTATTTATATT
Found at i:5750497 original size:23 final size:24
Alignment explanation
Indices: 5750446--5750498 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 24
5750436 TATTATGCTG
**
5750446 AATATGTTAAAAATGTTTTAATTAT
1 AATAT-TTAAAAAAATTTTAATTAT
5750471 --TATTTAAAAAAATTTT-ATTAT
1 AATATTTAAAAAAATTTTAATTAT
5750492 AATATTT
1 AATATTT
5750499 GAATTGATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
21 5 0.21
22 11 0.46
23 8 0.33
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (24 bp):
AATATTTAAAAAAATTTTAATTAT
Found at i:5753847 original size:25 final size:25
Alignment explanation
Indices: 5753761--5753847 Score: 77
Period size: 26 Copynumber: 3.3 Consensus size: 25
5753751 TTAAGAACAC
5753761 TTTATTTTTATTAATTTAGCCATTTTTAT
1 TTTATTTTTA-TAATTTA---ATTTTTAT
**
5753790 TTTATTTTTATAATTTTGTTTTTAGT
1 TTTATTTTTATAATTTAATTTTTA-T
* *
5753816 TTAATTTTTA-CATTCTAATTTTTAT
1 TTTATTTTTATAATT-TAATTTTTAT
5753841 TTTATTT
1 TTTATTT
5753848 GCTTTAGTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
25 16 0.33
26 17 0.35
28 6 0.12
29 10 0.20
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.69
Consensus pattern (25 bp):
TTTATTTTTATAATTTAATTTTTAT
Found at i:5755252 original size:25 final size:26
Alignment explanation
Indices: 5755219--5755278 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 26
5755209 CCCAGCCCAT
*
5755219 TTTTAAAAT-AAACATAAAAAAATTA
1 TTTTAAAATAAAAAATAAAAAAATTA
5755244 TTTTAAAATAAAAAAATAAAAAAATTA
1 TTTTAAAAT-AAAAAATAAAAAAATTA
5755271 TTTTAAAA
1 TTTTAAAA
5755279 GTACTTTAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 9 0.28
27 23 0.72
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (26 bp):
TTTTAAAATAAAAAATAAAAAAATTA
Found at i:5756772 original size:24 final size:23
Alignment explanation
Indices: 5756728--5756773 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
5756718 AAAATAATTG
* **
5756728 GAAAAGAAATCTAAAGCCTAAAA
1 GAAAAGAAAACTAAAAACTAAAA
5756751 GAAAAGAAAAACTAAAAACTAAA
1 GAAAAG-AAAACTAAAAACTAAA
5756774 TTATAGGGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.67, C:0.11, G:0.11, T:0.11
Consensus pattern (23 bp):
GAAAAGAAAACTAAAAACTAAAA
Found at i:5764128 original size:20 final size:20
Alignment explanation
Indices: 5764103--5764140 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
5764093 CAAATTTCTA
5764103 AAATTAAAAACATATGAATT
1 AAATTAAAAACATATGAATT
* *
5764123 AAATTATAAATATATGAA
1 AAATTAAAAACATATGAA
5764141 AAGTTTACCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.32
Consensus pattern (20 bp):
AAATTAAAAACATATGAATT
Found at i:5771860 original size:10 final size:11
Alignment explanation
Indices: 5771845--5771873 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
5771835 TCCAAAGGTG
5771845 TGAATTGAAT-
1 TGAATTGAATA
5771855 TGAATTGAATA
1 TGAATTGAATA
5771866 TGAATTGA
1 TGAATTGA
5771874 TATTTAATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.41, C:0.00, G:0.21, T:0.38
Consensus pattern (11 bp):
TGAATTGAATA
Found at i:5772483 original size:24 final size:24
Alignment explanation
Indices: 5772412--5772569 Score: 127
Period size: 25 Copynumber: 6.4 Consensus size: 24
5772402 AACTTATCGA
* * *
5772412 TTAATGGCTCTCCTGAGCTTCTCG
1 TTAATGGCTCACATGAGCTTCCCG
* * * * *
5772436 ATACTGGCTCACTTAAACCTTCCCG
1 TTAATGGCTCACAT-GAGCTTCCCG
* **
5772461 TTATTGGCTCGTATGAGCTTCCCG
1 TTAATGGCTCACATGAGCTTCCCG
* **
5772485 TTAATGGCTCTCCGGAGCTTCCCG
1 TTAATGGCTCACATGAGCTTCCCG
* *
5772509 TTACATGGCTCACATAAGCTTCCCA
1 TTA-ATGGCTCACATGAGCTTCCCG
*
5772534 TTACATGGCTCACATGAGCTTCCTG
1 TTA-ATGGCTCACATGAGCTTCCCG
5772559 TTATATGGCTC
1 TTA-ATGGCTC
5772570 GAAAGAGGGC
Statistics
Matches: 104, Mismatches: 28, Indels: 3
0.77 0.21 0.02
Matches are distributed among these distances:
24 40 0.38
25 64 0.62
ACGTcount: A:0.18, C:0.30, G:0.19, T:0.33
Consensus pattern (24 bp):
TTAATGGCTCACATGAGCTTCCCG
Found at i:5772494 original size:73 final size:74
Alignment explanation
Indices: 5772412--5772569 Score: 194
Period size: 73 Copynumber: 2.1 Consensus size: 74
5772402 AACTTATCGA
* * * * * **
5772412 TTAATGGCTCTCCTGAGCTTCTCGATAC-TGGCTCACTTAAACCTTCCCGTTA-TTGGCTCGTAT
1 TTAATGGCTCTCCGGAGCTTCCCGATACATGGCTCACAT-AACCTTCCCATTACATGGCTCACAT
5772475 GAGCTTCCCG
65 GAGCTTCCCG
* *
5772485 TTAATGGCTCTCCGGAGCTTCCCGTTACATGGCTCACATAAGCTTCCCATTACATGGCTCACATG
1 TTAATGGCTCTCCGGAGCTTCCCGATACATGGCTCACATAACCTTCCCATTACATGGCTCACATG
*
5772550 AGCTTCCTG
66 AGCTTCCCG
5772559 TTATATGGCTC
1 TTA-ATGGCTC
5772570 GAAAGAGGGC
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
73 36 0.50
74 29 0.40
75 7 0.10
ACGTcount: A:0.18, C:0.30, G:0.19, T:0.33
Consensus pattern (74 bp):
TTAATGGCTCTCCGGAGCTTCCCGATACATGGCTCACATAACCTTCCCATTACATGGCTCACATG
AGCTTCCCG
Done.