Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60343961
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 596159 characters in sequence are not A, C, G, or T
File 199 of 204
Found at i:58906538 original size:20 final size:20
Alignment explanation
Indices: 58906513--58906573 Score: 88
Period size: 20 Copynumber: 3.0 Consensus size: 20
58906503 ATTCAATATG
58906513 TACATAGATGGTGTCATACA
1 TACATAGATGGTGTCATACA
*
58906533 TACATAGA-GAGTTTCATACA
1 TACATAGATG-GTGTCATACA
*
58906553 TACATATATGGTGTCATACA
1 TACATAGATGGTGTCATACA
58906573 T
1 T
58906574 GCATTCATAC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
19 1 0.03
20 34 0.94
21 1 0.03
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33
Consensus pattern (20 bp):
TACATAGATGGTGTCATACA
Found at i:58907651 original size:214 final size:213
Alignment explanation
Indices: 58907257--58907680 Score: 523
Period size: 214 Copynumber: 2.0 Consensus size: 213
58907247 TGGATTTAGA
* * * *
58907257 TTTAAGAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACTCAGCACGTTAAGGCATGTTT
1 TTTAAAAGGATATTTGACTATTTGGTCAAACGAGAAATCGAAACTCAGCACGTTAAGGCACGTTT
** * *
58907322 TCTTGATTTTTTAAACGCAAAATATTGCCTTACTGTAAAAGTTTAAAAAGGATATTTGAGTATTT
66 TCTCAATTTTTCAAACGCAAAATATTGCCTTACTGTAAAAGTTTAAAAAGGATATTCGAGTATTT
* * *
58907387 GGTCGTACGGGAAATCGAAATCCAGCACGTTACAGCACGTTCTCTCGATTTTCCAAACGCAAAAT
131 GGTCGAAAGGGAAATCGAAATCCAACACGTTACAGCACGTTCTCTCGATTTTCCAAACGCAAAAT
58907452 ATTACCTTACTTTGAAAT
196 ATTACCTTACTTTGAAAT
*
58907470 TTTAAAAGGATATTTGACTTATTTGGTCAAACGAGAAATCGAAAC-CTAGCACGTTAGGGCACGT
1 TTTAAAAGGATATTTGAC-TATTTGGTCAAACGAGAAATCGAAACTC-AGCACGTTAAGGCACGT
* ** * *
58907534 TTTCTCAATTTTTCAAACGTAAAATATTGCCTTGTTTTGAAAGTTTAAAAAGGATATTCG-GTTA
64 TTTCTCAATTTTTCAAACGCAAAATATTGCCTTACTGTAAAAGTTTAAAAAGGATATTCGAG-TA
* * ** * * * * *
58907598 TTTGGTC-AAAGGAGTAATCGAAA-CTTAACACGTTAGGGCACGTTTTTTCGATTTTCTAAATGT
128 TTTGGTCGAAAGG-GAAATCGAAATC-CAACACGTTACAGCACGTTCTCTCGATTTTCCAAACGC
* *
58907661 GAAATATTACCTTATTTTGA
191 AAAATATTACCTTACTTTGA
58907681 TTTTTTTTTT
Statistics
Matches: 178, Mismatches: 28, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
213 22 0.12
214 156 0.88
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (213 bp):
TTTAAAAGGATATTTGACTATTTGGTCAAACGAGAAATCGAAACTCAGCACGTTAAGGCACGTTT
TCTCAATTTTTCAAACGCAAAATATTGCCTTACTGTAAAAGTTTAAAAAGGATATTCGAGTATTT
GGTCGAAAGGGAAATCGAAATCCAACACGTTACAGCACGTTCTCTCGATTTTCCAAACGCAAAAT
ATTACCTTACTTTGAAAT
Found at i:58907666 original size:107 final size:108
Alignment explanation
Indices: 58907263--58907680 Score: 463
Period size: 107 Copynumber: 3.9 Consensus size: 108
58907253 TAGATTTAAG
* * * * *
58907263 AGGATATTTG-GCTATTTGGTCGAACGAGAAATCGAAACTCAGCACGTTAAGGCATGTTTTCTTG
1 AGGATATTTGAGTTATTTGGTCAAACGAGAAATCGAAACTCAGCACGTTAGGGCACGTTTTCTCG
* * * *
58907327 ATTTTTTAAACGCAAAATATTGCCTTACTGTAAAAGTTTAAAA
66 ATTTTCTAAACGCAAAATATTACCTTACTTTGAAAGTTTAAAA
** * ** *
58907370 AGGATATTTGAG-TATTTGGTCGTACGGGAAATCGAAA-TCCAGCACGTTACAGCACGTTCTCTC
1 AGGATATTTGAGTTATTTGGTCAAACGAGAAATCGAAACT-CAGCACGTTAGGGCACGTTTTCTC
* *
58907433 GATTTTCCAAACGCAAAATATTACCTTACTTTGAAA-TTTTAAA
65 GATTTTCTAAACGCAAAATATTACCTTACTTTGAAAGTTTAAAA
*
58907476 AGGATATTTGACTTATTTGGTCAAACGAGAAATCGAAAC-CTAGCACGTTAGGGCACGTTTTCTC
1 AGGATATTTGAGTTATTTGGTCAAACGAGAAATCGAAACTC-AGCACGTTAGGGCACGTTTTCTC
* * * **
58907540 AATTTT-TCAAACGTAAAATATTGCCTTGTTTTGAAAGTTTAAAA
65 GATTTTCT-AAACGCAAAATATTACCTTACTTTGAAAGTTTAAAA
* * * * * *
58907584 AGGATATTCG-GTTATTTGGTCAAAGGAGTAATCGAAACTTAACACGTTAGGGCACGTTTTTTCG
1 AGGATATTTGAGTTATTTGGTCAAACGAGAAATCGAAACTCAGCACGTTAGGGCACGTTTTCTCG
* ** *
58907648 ATTTTCTAAATGTGAAATATTACCTTATTTTGA
66 ATTTTCTAAACGCAAAATATTACCTTACTTTGA
58907681 TTTTTTTTTT
Statistics
Matches: 263, Mismatches: 39, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
106 19 0.07
107 227 0.86
108 17 0.06
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.34
Consensus pattern (108 bp):
AGGATATTTGAGTTATTTGGTCAAACGAGAAATCGAAACTCAGCACGTTAGGGCACGTTTTCTCG
ATTTTCTAAACGCAAAATATTACCTTACTTTGAAAGTTTAAAA
Found at i:58909288 original size:102 final size:101
Alignment explanation
Indices: 58909104--58909546 Score: 525
Period size: 102 Copynumber: 4.4 Consensus size: 101
58909094 GTGAAAGTGA
* * *
58909104 TGGTCACGTGTGTAGTACTATGTGTAGGCTGCTACGTGTACTTGA-AAGAAAT-GTCACATGCGT
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAAC-TGATAA-AAATGGTCACATGCGT
58909167 AGTACTAAGTGAAGGCTACAATGTGTACCGAGAAGCTT
64 AGTACTAAGTGAAGGCTACAATGTGTACCGAGAAGCTT
* *
58909205 TGGTCACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAACAGATAAATAATGGTCACATGCGTA
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACTGATAAA-AATGGTCACATGCGTA
*
58909270 GTACTAAGTGAAGGCTACAATATGTACCGAGAAGCTT
65 GTACTAAGTGAAGGCTACAATGTGTACCGAGAAGCTT
* * * * * *
58909307 TGGTCATGTGTGTAGTACTGTGTGAAGGCTAGTACGTGAATTGATAAATGATGGTCACATGTGTA
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACTGATAAA-AATGGTCACATGCGTA
* *
58909372 GTACTAAGTGAAGGCTACTATGTGTACCGAAAAGCTT
65 GTACTAAGTGAAGGCTACAATGTGTACCGAGAAGCTT
* * * * * * * *
58909409 TAGTCACGTATGTAGTTCTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGATCACGTGTGTA
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACTGATAAAA-ATGGTCACATGCGTA
* * * * * ***
58909473 GTACTATGTGAAGGCTACTACGTGAACC-ATAAAAAT
65 GTACTAAGTGAAGGCTACAATGTGTACCGAGAAGCTT
* *
58909509 TGATCACGTATGTAGTACTATGTGAAGGCTACTACGTG
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTG
58909547 TATCGAATGA
Statistics
Matches: 301, Mismatches: 37, Indels: 9
0.87 0.11 0.03
Matches are distributed among these distances:
100 42 0.14
101 83 0.28
102 176 0.58
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (101 bp):
TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACTGATAAAAATGGTCACATGCGTAG
TACTAAGTGAAGGCTACAATGTGTACCGAGAAGCTT
Found at i:58909480 original size:50 final size:50
Alignment explanation
Indices: 58909104--58909546 Score: 349
Period size: 51 Copynumber: 8.8 Consensus size: 50
58909094 GTGAAAGTGA
* * * * **
58909104 TGGTCACGTGTGTAGTACTATGTGTAGGCTGCTACGTGTA-CTTGAAAGAAA
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGT-AAA-ACT
* * * * * * *
58909155 T-GTCACATGCGTAGTACTAAGTGAAGGCTACAATGTGTACCG-AGAAGCTT
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTA-AAAC-T
* * *
58909205 TGGTCACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAACAGATAAATA-A
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAA-ACT
* * * * ** * *
58909256 TGGTCACATGCGTAGTACTAAGTGAAGGCTACAATATGTACCG-AGAAGCTT
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTA-AAAC-T
* * * ** ***
58909307 TGGTCATGTGTGTAGTACTGTGTGAAGGCTAGTACGTGAATTGATAAATGA
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACT
* * * *
58909358 TGGTCACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCG-AAAAGCTT
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAA-C-T
* * *
58909409 TAGTCACGTATGTAGTTCTATGTGAAGGCTACTACGTGAACCGTAAAACT
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACT
* * *
58909459 TGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCATAAAAAT
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACT
* *
58909509 TGATCACGTATGTAGTACTATGTGAAGGCTACTACGTG
1 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTG
58909547 TATCGAATGA
Statistics
Matches: 304, Mismatches: 73, Indels: 31
0.75 0.18 0.08
Matches are distributed among these distances:
49 5 0.02
50 118 0.39
51 171 0.56
52 8 0.03
53 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (50 bp):
TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACT
Found at i:58910464 original size:5 final size:5
Alignment explanation
Indices: 58910447--58910509 Score: 65
Period size: 5 Copynumber: 12.6 Consensus size: 5
58910437 TGCTTGATAA
* * * *
58910447 AATGG AATAG AATGG AATGG TAT-G ACATGG AATAG TATGG AATGG AATGG
1 AATGG AATGG AATGG AATGG AATGG A-ATGG AATGG AATGG AATGG AATGG
*
58910497 TATGG AATGG AAT
1 AATGG AATGG AAT
58910510 ATATATATAT
Statistics
Matches: 46, Mismatches: 10, Indels: 4
0.77 0.17 0.07
Matches are distributed among these distances:
4 1 0.02
5 43 0.93
6 2 0.04
ACGTcount: A:0.40, C:0.02, G:0.33, T:0.25
Consensus pattern (5 bp):
AATGG
Found at i:58910476 original size:15 final size:15
Alignment explanation
Indices: 58910456--58910509 Score: 83
Period size: 15 Copynumber: 3.6 Consensus size: 15
58910446 AAATGGAATA
58910456 GAATGGAATGGTAT-
1 GAATGGAATGGTATG
*
58910470 GACATGGAATAGTATG
1 GA-ATGGAATGGTATG
58910486 GAATGGAATGGTATG
1 GAATGGAATGGTATG
58910501 GAATGGAAT
1 GAATGGAAT
58910510 ATATATATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.06
15 32 0.89
16 2 0.06
ACGTcount: A:0.37, C:0.02, G:0.35, T:0.26
Consensus pattern (15 bp):
GAATGGAATGGTATG
Found at i:58915035 original size:30 final size:30
Alignment explanation
Indices: 58914994--58915093 Score: 155
Period size: 30 Copynumber: 3.3 Consensus size: 30
58914984 GTTTGAGGGG
*
58914994 GGATCCGCGCGTCGACCCGGCCCGGTTCCA
1 GGATCAGCGCGTCGACCCGGCCCGGTTCCA
* *
58915024 GGATCATCGCGTCGACCCGGCCTGGTTCCA
1 GGATCAGCGCGTCGACCCGGCCCGGTTCCA
*
58915054 GGATCCGCGCGTCGACCCGGCCCGGTTCCA
1 GGATCAGCGCGTCGACCCGGCCCGGTTCCA
*
58915084 GGATCCGCGC
1 GGATCAGCGC
58915094 ATATTCCTTT
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 64 1.00
ACGTcount: A:0.11, C:0.41, G:0.33, T:0.15
Consensus pattern (30 bp):
GGATCAGCGCGTCGACCCGGCCCGGTTCCA
Found at i:58915408 original size:3 final size:3
Alignment explanation
Indices: 58915400--58915433 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
58915390 TATTTTCTCC
*
58915400 TTA TTA TTA TTA ATA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
58915434 GTACATACAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:58915802 original size:24 final size:25
Alignment explanation
Indices: 58915757--58915807 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 25
58915747 ATATTCATTC
** *
58915757 ATTTTATATATATATGTTTATGTAT
1 ATTTTATATATATATGCATATGCAT
*
58915782 ATTTTTTA-ATATATGCATATGCAT
1 ATTTTATATATATATGCATATGCAT
58915806 AT
1 AT
58915808 GCATATTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
24 15 0.68
25 7 0.32
ACGTcount: A:0.33, C:0.04, G:0.08, T:0.55
Consensus pattern (25 bp):
ATTTTATATATATATGCATATGCAT
Found at i:58917263 original size:16 final size:17
Alignment explanation
Indices: 58917233--58917264 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
58917223 AGACATGCAA
58917233 AGTAGCAACAGAGAAAC
1 AGTAGCAACAGAGAAAC
58917250 AGTAGCAA-AGAGAAA
1 AGTAGCAACAGAGAAA
58917265 TAATAAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.56, C:0.12, G:0.25, T:0.06
Consensus pattern (17 bp):
AGTAGCAACAGAGAAAC
Found at i:58919096 original size:73 final size:71
Alignment explanation
Indices: 58918975--58919124 Score: 246
Period size: 73 Copynumber: 2.1 Consensus size: 71
58918965 AAAGAGAAAT
58918975 AATAAACAATGTAATATTGGCAGGCCATGGATTGCAACGTTTTCAAAAAAAAGGGAGAAATACAC
1 AATAAACAATGTAATATTGGCAGGCCATGGATTGCAACGTTTTC--AAAAAAGGGAGAAATACAC
58919040 AAATTTTG
64 AAATTTTG
* * *
58919048 AATAAACAATGTAATATTGGTAGGCCATGGATTGTAACGTTTTTAAAAAAGGGAGAAATACACAA
1 AATAAACAATGTAATATTGGCAGGCCATGGATTGCAACGTTTTCAAAAAAGGGAGAAATACACAA
*
58919113 ATTTTT
66 ATTTTG
58919119 AATAAA
1 AATAAA
58919125 AAAAAGAACA
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
71 32 0.44
73 41 0.56
ACGTcount: A:0.45, C:0.10, G:0.18, T:0.27
Consensus pattern (71 bp):
AATAAACAATGTAATATTGGCAGGCCATGGATTGCAACGTTTTCAAAAAAGGGAGAAATACACAA
ATTTTG
Found at i:58919818 original size:16 final size:17
Alignment explanation
Indices: 58919791--58919824 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
58919781 CACACAAAGC
58919791 AGCAACAGAGAAACAAT
1 AGCAACAGAGAAACAAT
*
58919808 AGCAA-AGAGAAATAAT
1 AGCAACAGAGAAACAAT
58919824 A
1 A
58919825 AACAATGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.62, C:0.12, G:0.18, T:0.09
Consensus pattern (17 bp):
AGCAACAGAGAAACAAT
Found at i:58922364 original size:16 final size:17
Alignment explanation
Indices: 58922334--58922367 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
58922324 AGACATGCAA
58922334 AGTAGCAACAGAGAAAC
1 AGTAGCAACAGAGAAAC
58922351 AGTAGCAA-AGAGAAAC
1 AGTAGCAACAGAGAAAC
58922367 A
1 A
58922368 ATAAACAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.56, C:0.15, G:0.24, T:0.06
Consensus pattern (17 bp):
AGTAGCAACAGAGAAAC
Found at i:58924310 original size:33 final size:34
Alignment explanation
Indices: 58924253--58924323 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 34
58924243 TTCTTTTTTT
* *
58924253 TTTCTTTTTTTTATACCGTTTATACATACAAATA
1 TTTCTTTTTTTAATACCGTGTATACATACAAATA
* * *
58924287 TTTC-TTTTTTAATACTGTGTATACATATATATA
1 TTTCTTTTTTTAATACCGTGTATACATACAAATA
58924320 TTTC
1 TTTC
58924324 AAAGGTGTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 28 0.88
34 4 0.12
ACGTcount: A:0.28, C:0.13, G:0.04, T:0.55
Consensus pattern (34 bp):
TTTCTTTTTTTAATACCGTGTATACATACAAATA
Found at i:58924862 original size:856 final size:851
Alignment explanation
Indices: 58917143--58927235 Score: 10501
Period size: 856 Copynumber: 11.9 Consensus size: 851
58917133 AATAGAAACC
* * * *
58917143 CTAGCCCCACCACCTCTTCGCGCTGTACCCTCCACGTGCCGTCTGATACCTTTCTGCCATCGTTA
1 CTAGCCGCACCACCTCTTCGCGCCGTACCCTCCACGTGCCGTCTGACACCTTTCTGCCGTCGTTA
* *
58917208 CCTGCAAGGAAGAACAGACATGCAAAGTAGCAACAGAGAAACAGTAGCAAAGAGAAATAATAAAC
66 CCTGCAAGGAAGAACAGACACGCAAAGCAGCAACAGAGAAACAGTAGCAAAGAGAAATAATAAAC
*
58917273 AATGTAATATTGGCAGGCCATGGATTGTAACGTTTTCAAAAAAAGGGGGAAATACACAAATTTTG
131 AATGTAATATTGGCAGGCCATGGATTGTAACGTTTTCAAAAAAAGGGAGAAATACACAAATTTTG
* *
58917338 AATAAACAAAAAAGAACAGATTCAAAGCATACAAACAAAAAATATAACAACCAAGCAAA-AAAAA
196 AATAAACAAAAAAGAACAGATTCAAAGCATACAAACGAAAAATATAGCAACCAAGCAAAGAAAAA
* * * *
58917402 GTGAGAAACGTGCAAAGGTCCTCTTCATTTTTATTTTC-TTTGTTTTT-TTTTTTTGAAACTGTT
261 GTGAGAAACGTGCAATGGTCCTCTTCATTTTTATTTTCTTTTTTTTTTCTTTTTTTTAAACCGTT
*
58917465 TATACATACAAATATTTCTTTTTTAATACTGTGTATACTTATATATGTATTTCAAAGGTGTATGA
326 TATACATACAAATATTTCTTTTTTAATACTGTGTATACATATATA-GTATTTCAAAGGTGTATGA
* * * * *
58917530 AAAGAGAAACTTACCCCTTTTTCTTTGATTTCTCCGAAAAAAGAGACTTTTGGCCTTCCGGTCG-
390 AAAGAGAAACTTA-CCCTTTCTCTTTGATTTCACCAAAAAAAGGGACTTTTGGCCTTCCAGTCGC
* * * * * * * * * * *
58917594 --CCGTCGACAGTAGCGCTGTCGCCGGATACCTGTGGCCGACGTGGCAGCAGTTTGTCGGATTCT
454 TACCGACGACAGCA-C-C-GTCGCCAGATATCGGTGGTCGACGCGACAGCAGTTCGCCGAATTCT
* * *
58917657 GGAAAAGGGGAAAGAGTTTTCGAGAGAAAATTTTGGTTTTTTTTGGAGAAGTGTAGAAATGA-GG
516 GGAAAAGGGGAAAGAGTTTTGGAGAGAAAATTTTGG-TTTTTTTGGAGAAGTGCAGAAAT-ATAG
* *
58917721 C-ATTTTTATTTAAAAAAATTAACTTAAATAGGCCCTACGAAACGACGTCGTTTTGGGCCAGTGC
579 CTA-TTTTA---AAAAAAATTGACTTAAATAGGCCCTACGAAACGGCGTCGTTTTGGGCCAGTGC
* ** * * *
58917785 TCCAGACGACAAAACGGCGTCGTTTTGTCCCTTGACCCATGCACACGACCCAACCTACCAGGGGA
640 TCCAGACGACAAAAC-GCGTCGTTTAG-CCCTTGACCCGCGCGCGCGACCCAACCTGCCAGGGGA
** * * *
58917850 TCCTCGTGTTTTCAATTTTTGGGTTATTTATGCAGCATGTCCTTTCGATTTTTCCACATATTTTA
703 TCAGCGCGTTTTCAACTTTTGGGTTATTTATGCAGCATGTCCTTCCGATTTTTCCACATATTTTA
58917915 ATTAGATCC---------TTTTTGTTTCTTTTATTTCGGCCTGATAATTTTGCTTTT-AGCAAAA
768 ATTAGATCCTTTTTTTTATTTTTGTTTCTTTTATTTCGGCCTGATAATTTTG-TTTTCAGCAAAA
*
58917970 TAGAAACCTTAGCCCCACCA
832 TAGAAACCCTAGCCCCACCA
* * * * *
58917990 CTAGCCCCACCACCTCTTCGCGCCATACCCTCCACGTGCCGTCTAACACCTTTCTACCATCGTTA
1 CTAGCCGCACCACCTCTTCGCGCCGTACCCTCCACGTGCCGTCTGACACCTTTCTGCCGTCGTTA
** ** *
58918055 CCTGCAAGGAAGAACAGACACGCAAAGCAATAGTAGAGAAATAGTAGCAAAGAGAAATAATAAAC
66 CCTGCAAGGAAGAACAGACACGCAAAGCAGCAACAGAGAAACAGTAGCAAAGAGAAATAATAAAC
* * * *
58918120 AATGTAATATTAGCAGGCCATGGATTGTAACGTTTTCAAGAACAGGGAGAAAT-----AGTTTTG
131 AATGTAATATTGGCAGGCCATGGATTGTAACGTTTTCAAAAAAAGGGAGAAATACACAAATTTTG
*
58918180 AATAAACAAAAAAGCAACAGATTCAAAGCATACAAACGAAAAATATAGAAACCAAGCAAAGAAAA
196 AATAAACAAAAAAG-AACAGATTCAAAGCATACAAACGAAAAATATAGCAACCAAGCAAAGAAAA
* * * * *
58918245 AGTGAGAAACATGCAAAGGTCTTCTTCATTTTTATGTTCTTTGTTTTTTCTTATTTTTTGAAACC
260 AGTGAGAAACGTGCAATGGTCCTCTTCATTTTTATTTTCTTTTTTTTTTCTT-TTTTTT-AAACC
* *
58918310 ATTTATACATACAAATATTTCTTTTTTAATACTGTCTATACATATATATGTATTTCAAAGGTGTA
323 GTTTATACATACAAATATTTCTTTTTTAATACTGTGTATACATATATA-GTATTTCAAAGGTGTA
* * * ***
58918375 TGAAAAGAGAAACTTACCCCTTCCTCTTTGATTTCACCGAAAAAAGGGACATTTGGCCTTTTGGT
387 TGAAAAGAGAAACTTA-CCCTTTCTCTTTGATTTCACCAAAAAAAGGGACTTTTGGCCTTCCAGT
* *** * ** * ** * * *
58918440 TGCCGTCGACAACAGTGCCATTACCAGATATCGGTGGCCGACG-AAGCAGCGGTTCGCC-AGATT
451 CGCTACCGACGACAGCACCGTCGCCAGATATCGGTGGTCGACGCGA-CAGCAGTTCGCCGA-ATT
* * * *
58918503 CTGGAAAAGCAGTAAA-AGTTTTGGAGAGAAAATTTTGGTTTCTTTATTGGAGAAATGCATAAAT
514 CTGGAAAAG-GGGAAAGAGTTTTGGAGAGAAAATTTTGG-TT-TTT-TTGGAGAAGTGCAGAAAT
* * * *
58918567 GA-GGCTATTTAAAAAAAAACAATTTGACTTAAATAGGCCCTACGAAACGACGTCGTTTTGAGCC
575 -ATAGCTATTT--TAAAAAA-AA-TTGACTTAAATAGGCCCTACGAAACGGCGTCGTTTTGGGCC
* * * * * * * * *
58918631 AGTGCTCCAGACCAAAAAAGGCATCGTTTAGCCCCTTGACCCGTGTGCACGACCCAACTTGTCAG
635 AGTGCTCCAGACGACAAAACGCGTCGTTTAG-CCCTTGACCCGCGCGCGCGACCCAACCTGCCAG
* * *
58918696 GGGATCCGCGCGTTTTCATCTTTTGGGTTATTTATGCAGCATGTCCTTCCAATTTTTCCACATAT
699 GGGATCAGCGCGTTTTCAACTTTTGGGTTATTTATGCAGCATGTCCTTCCGATTTTTCCACATAT
*
58918761 TTTAATTAGATACTTTTTTTGATTATTTTTGTTTCTTTTATCTT-GGCCTGATAATTTTGTTTTC
764 TTTAATTAGAT-CCTTTTTT--TTATTTTTGTTTCTTTTAT-TTCGGCCTGATAATTTTGTTTTC
*
58918825 AGCAAAATA-AAAACCTGAGCCCCACCA
825 AGCAAAATAGAAACCCT-AGCCCCACCA
* * * *
58918852 CTAGCCGCACCACCTCTTCGCGCCGTACCATCCACGTGCCGTCTGACACCTTTCTACCATCATTA
1 CTAGCCGCACCACCTCTTCGCGCCGTACCCTCCACGTGCCGTCTGACACCTTTCTGCCGTCGTTA
*
58918917 CCTGCAAGGAAGAACAGACACGCAAAGCAGCAACAGAAAAACAGTAGCAAAGAGAAATAATAAAC
66 CCTGCAAGGAAGAACAGACACGCAAAGCAGCAACAGAGAAACAGTAGCAAAGAGAAATAATAAAC
*
58918982 AATGTAATATTGGCAGGCCATGGATTGCAACGTTTTCAAAAAAAAGGGAGAAATACACAAATTTT
131 AATGTAATATTGGCAGGCCATGGATTGTAACGTTTTC-AAAAAAAGGGAGAAATACACAAATTTT
** * * ** * * * *
58919047 GAATAAACAATGTAATATTGGTAGGCCATGGATTGTAACGTTTTTAAAAAAGGGAGAAATACA-C
195 GAATAAACAA---AA-A-----AGAACA--GATT-CAAAG--CAT-ACAAA-CGAAAAATATAGC
**** * ** ** * * * ** **** ** ****
58919111 AA--ATTTTTAATAAAAA-AAAGAACATATTCAA-AGT-ATACAAACA-AAAAATATAGCAAACA
244 AACCA-AGCAAAGAAAAAGTGAGAA-ACGTGCAATGGTCCT-C-TTCATTTTTAT-TTTC-TTTT
************* * * ** * * * ** *
58919170 AGCAAAGAAAAAGTGAGAAACGTGCAAAGGTCCTCTTCATTTTATTTTCTTTTTTAATATTGTGT
303 TTTTTTCTTTTTTTTA-AACCGT--TTA--TAC-ATACA-AATA-TTTCTTTTTTAATACTGTGT
* * *
58919235 ATACGTATATATGTATTTCAAAGGTGTATAAAAAGAGAAACTTACCGCTTCCTCTTTGATTTCAC
360 ATACATATATA-GTATTTCAAAGGTGTATGAAAAGAGAAACTTACC-CTTTCTCTTTGATTTCAC
* ** * *** ** * * *
58919300 CAAAAAAAAGGGACTTTTGACCTTCTGGTCACCGTCGACGACAGCGTCGTCGCCGGATACCAGTG
423 C-AAAAAAAGGGACTTTTGGCCTTCCAGTCGCTACCGACGACAGCACCGTCGCCAGATATCGGTG
* * * *
58919365 GCCGACGCTG-CAGCAGTT-------TGCT------------AGA-TTCT-GA-A-AAAAATTTG
487 GTCGACGC-GACAGCAGTTCGCCGAATTCTGGAAAAGGGGAAAGAGTTTTGGAGAGAAAATTTTG
* * * ***** *
58919406 GTTTTTTTGGAGAAGTACAGAAATGA-GGTTATTTTAAATTTTTTTGACTTAAATAGGCTCTACG
551 GTTTTTTTGGAGAAGTGCAGAAAT-ATAGCTATTTTAAAAAAAATTGACTTAAATAGGCCCTACG
* * *
58919470 AAATGGCGTCGTTTTGGGCCAGTGCTCCAGACAACAAAACGGCGTCGTTTAGGCCCTTTA-CC-C
615 AAACGGCGTCGTTTTGGGCCAGTGCTCCAGACGACAAAAC-GCGTCGTTTA-GCCCTTGACCCGC
* * * * ** *
58919533 GCGCGCGACCTAACTTGCTAGGGGATCCGCGCGTTTTCAACTTTTTCGTTATTTCTGCAGCATGT
678 GCGCGCGACCCAACCTGCCAGGGGATCAGCGCGTTTTCAACTTTTGGGTTATTTATGCAGCATGT
*
58919598 CCTTCTGATTTTTCCACATATTTTAATTAGAT-C--------ATTTTTGTTTCTTTTATTTCGGC
743 CCTTCCGATTTTTCCACATATTTTAATTAGATCCTTTTTTTTATTTTTGTTTCTTTTATTTCGGC
* * *
58919654 CTGACAATTTTGTTTTCAGCAACATAGAAACCCAAGCCCCACCA
808 CTGATAATTTTGTTTTCAGCAAAATAGAAACCCTAGCCCCACCA
* * * * * *
58919698 TTAGCCGCACCACATCTTCGCGTCGTATCCTCCACGTGCCGTCTAACACCCTTCTGCCGTCGTTA
1 CTAGCCGCACCACCTCTTCGCGCCGTACCCTCCACGTGCCGTCTGACACCTTTCTGCCGTCGTTA
* * *
58919763 CCTGCAAGGAGGAACAGACACACAAAGCAGCAACAGAGAAACAATAGCAAAGAGAAATAATAAAC
66 CCTGCAAGGAAGAACAGACACGCAAAGCAGCAACAGAGAAACAGTAGCAAAGAGAAATAATAAAC
* *
58919828 AATGTAATATTGGCAGGCCATGGATTGTAACGTTTTCAAAAAAAGTGAGAATTACACAAATTTTG
131 AATGTAATATTGGCAGGCCATGGATTGTAACGTTTTCAAAAAAAGGGAGAAATACACAAATTTTG
* *
58919893 AATAAACAAAAAAGAATAGATTCAAAGTATACAAACG-AAAA-ATAGCAACCAAGCAAAG-AAAA
196 AATAAACAAAAAAGAACAGATTCAAAGCATACAAACGAAAAATATAGCAACCAAGCAAAGAAAAA
* * * *
58919955 GCGAGAAACGTGCAATGGTCCTCTTCA-TTTTATTTTC----TTTGTT-TTTTATTGAAACCGTT
261 GTGAGAAACGTGCAATGGTCCTCTTCATTTTTATTTTCTTTTTTTTTTCTTTTTTTTAAACCGTT
* **
58920014 TATACATACAAATATTTCTTTTTTAATACTGTGTATACATATATATGTACTTCAAAGGAATATGA
326 TATACATACAAATATTTCTTTTTTAATACTGTGTATACATATATA-GTATTTCAAAGGTGTATGA
* * *
58920079 AAAGAGAAACTTACCCCTTTCTCTTTGATTTCACCAAAAAAAGAGACTTTTGGCCTTCTAGTCAC
390 AAAGAGAAACTTA-CCCTTTCTCTTTGATTTCACCAAAAAAAGGGACTTTTGGCCTTCCAGTCGC
* * * * * * * * * * *
58920144 -CCTCGACGACAGCGCCGTCGCCGGAAACCGGTGGCCAACGCGGCAGCAGTTCCCCGGATTCTGA
454 TAC-CGACGACAGCACCGTCGCCAGATATCGGTGGTCGACGCGACAGCAGTTCGCCGAATTCTGG
* *
58920208 AAAAGTGGAAAGAGTTTTGGAGAGAAAATTTTGTTTTTTTTTGGAGAAGTGCAGAAATGA-AGCT
518 AAAAGGGGAAAGAGTTTTGGAGAGAAAATTTTG-GTTTTTTTGGAGAAGTGCAGAAAT-ATAGCT
* * * *
58920272 ATTTTTTTAAAAAAATTGACTTAAATAGGCCTTATGAAACGGCGTCGTTTTGGGCCAGTGCTCTA
581 A--TTTTAAAAAAAATTGACTTAAATAGGCCCTACGAAACGGCGTCGTTTTGGGCCAGTGCTCCA
* * ** ** * *
58920337 GACGTCAAAACGACGTCGTTTAGCCCTTTTACATGTTCGCGCGACCCAACCTGCTAGGGGATCTG
644 GACGACAAAACG-CGTCGTTTAGCCC-TTGACCCGCGCGCGCGACCCAACCTGCCAGGGGATCAG
* * * *
58920402 CGCGTTTTCAACTTTTGGGTTATTTATGCAACATGTCCTCCCAATTTTTCTACATATTTTAATTA
707 CGCGTTTTCAACTTTTGGGTTATTTATGCAGCATGTCCTTCCGATTTTTCCACATATTTTAATTA
* * * * *
58920467 GA---------TAATTTTTGTTTATTTTATTTCGGCCTGATAGTTTTTTTTTTCAGCAAGATAGA
772 GATCCTTTTTTTTATTTTTGTTTCTTTTATTTCGGCCTGATA-ATTTTGTTTTCAGCAAAATAGA
* * **
58920523 AACCCTAGACCAATAA
836 AACCCTAGCCCCACCA
* * * * *
58920539 CTAGCTGCACCACCTCTTCGCG-CGATACCCTTCACGTGCCGTCTAACATCTTTCTGCCATCGTT
1 CTAGCCGCACCACCTCTTCGCGCCG-TACCCTCCACGTGCCGTCTGACACCTTTCTGCCGTCGTT
* **
58920603 GCCTGCAAGGAAGAACAGACACGCAAAGCAAAAACAGAGAAACAGTAGCAAAGAGAAATAATAAA
65 ACCTGCAAGGAAGAACAGACACGCAAAGCAGCAACAGAGAAACAGTAGCAAAGAGAAATAATAAA
* * *
58920668 CAATGTAATATTGGCAGGCCAGGGATTGTTACGTTTTCAAAAAAAGGGAGAAAAACACAAATTTT
130 CAATGTAATATTGGCAGGCCATGGATTGTAACGTTTTCAAAAAAAGGGAGAAATACACAAATTTT
* * * *
58920733 GAATAAACAAAAAAGGACAGATTCAAAGCACAGAAACGAAAAATATAGCAACCAAACAAAGAAAA
195 GAATAAACAAAAAAGAACAGATTCAAAGCATACAAACGAAAAATATAGCAACCAAGCAAAGAAAA
* * * *
58920798 ATTAAGAAATGTGCAAAT-GTCCTCTTCATTTTTA----------TTTTTATTTTTTTTAAACCG
260 AGTGAGAAACGTGC-AATGGTCCTCTTCATTTTTATTTTCTTTTTTTTTTCTTTTTTTTAAACCG
* * *
58920852 TTTATACATACAAATATTTCTTTTTTAATATTGTGTGTGCATATATATGTATTTCAAAGGTGTAT
324 TTTATACATACAAATATTTCTTTTTTAATACTGTGTATACATATATA-GTATTTCAAAGGTGTAT
* * * * *
58920917 GAAAAGAGAAACTTACCCCCTTCTCTTTGATTTCACTGAAAAAAA-TGACTTTTGGCCTTTCAAT
388 GAAAAGAGAAACTTA-CCCTTTCTCTTTGATTTCAC-CAAAAAAAGGGACTTTTGGCCTTCCAGT
* ** * * ** * *** * * * *
58920981 CACTGTCGACAACAACGTCATCGCC-GAATATTTCTGATCGATGCGGCAGC-GATTCGCCGGATT
451 CGCTACCGACGACAGCACCGTCGCCAG-ATATCGGTGGTCGACGCGACAGCAG-TTCGCCGAATT
* * *
58921044 CTGGAAAAAGGGAAAGAGTTTTGGAGAGAAAATTTTTGTTTTTTTTGGAGAAGTGTAGAAATGA-
514 CTGGAAAAGGGGAAAGAGTTTTGGAGAGAAAA-TTTTGGTTTTTTTGGAGAAGTGCAGAAAT-AT
* ** * *
58921108 GGCTATTTTTTTAAAAAAAATTGACTTAAATAGGCCCTACGAAATAGCGTCGTTTTTGGCTAGTG
577 AGCTA---TTTTAAAAAAAATTGACTTAAATAGGCCCTACGAAACGGCGTCGTTTTGGGCCAGTG
* * * * * *
58921173 CTCCATATGAAAAAACGACATCGTTTAGCCCCTTGACCTGCGCGTGCGACCCAACCTGCCAGGGG
639 CTCCAGACGACAAAACG-CGTCGTTTAG-CCCTTGACCCGCGCGCGCGACCCAACCTGCCAGGGG
* *
58921238 ATCCA-CGCGTTTTCAACTTTTGGGTTATTTAAGCAGCATGTCCTTCCGATTTTT-CACATAGTT
702 AT-CAGCGCGTTTTCAACTTTTGGGTTATTTATGCAGCATGTCCTTCCGATTTTTCCACATATTT
*
58921301 TAATTAGATCCTCTTTGTTTATTTTTGTTTCTTTTATTTCGGCCTGATAA-TTT-TTTTCAGCAA
766 TAATTAGATCCT-TTTTTTTATTTTTGTTTCTTTTATTTCGGCCTGATAATTTTGTTTTCAGCAA
* *
58921364 AATAGAAAGCCTAACCCCACCA
830 AATAGAAACCCTAGCCCCACCA
* * *
58921386 CTAGCCGCACCACCTCTTCGCGCTGTACCCTCCACGTGCTGTCTGACACCTTTCTGCCATCGTTA
1 CTAGCCGCACCACCTCTTCGCGCCGTACCCTCCACGTGCCGTCTGACACCTTTCTGCCGTCGTTA
* * * * *
58921451 CCTGCAAGGAAGAACAGATACGCAAAGCAGTAAGAGAGAAACAATAGAAAAG-GAAATAATAAAC
66 CCTGCAAGGAAGAACAGACACGCAAAGCAGCAACAGAGAAACAGTAGCAAAGAGAAATAATAAAC
* * *
58921515 AATGTAATATTGGCAGGCCATAGATTGTAACATTTTCAAAAAATGGGAGAAATACACAAATTTTG
131 AATGTAATATTGGCAGGCCATGGATTGTAACGTTTTCAAAAAAAGGGAGAAATACACAAATTTTG
* * *
58921580 AATAAATAAAAAAGAACAGATTCAAAGCAAACAAACGAAAAATATTGCAACCAAGCAAAGAAAAA
196 AATAAACAAAAAAGAACAGATTCAAAGCATACAAACGAAAAATATAGCAACCAAGCAAAGAAAAA
* * * *
58921645 GTGAGAAAGGTGTAAAGGTCCTCTTAATTTTTATTTTCTATTTTCTTTGTTTTTTCTTTTTTTTT
261 GTGAGAAACGTGCAATGGTCCTCTTCATTTTTATTTTC-----T-TTT-TTTTTTC--TTTTTTT
*
58921710 TGAAACCGTTTATACAAACAAATATTTCTTTTTTAATACTGTGTATACATATATATGTATTTCAA
317 T-AAACCGTTTATACATACAAATATTTCTTTTTTAATACTGTGTATACATATATA-GTATTTCAA
* *
58921775 AGGTGTATGAAAAGAGAAACTTACCCTTTTCTCTTTGATTTCACCCAAAAAAAGGGAATTTTGGG
380 AGGTGTATGAAAAGAGAAACTTACCC-TTTCTCTTTGATTTCA-CCAAAAAAAGGGACTTTTGGC
* * ** * * ** * * *
58921840 CTTCGAGTCACTGTCGATGGCAGCACCGTCGCTGGATATCGGTGGTCGACGTGGCAGCGGTTCGC
443 CTTCCAGTCGCTACCGACGACAGCACCGTCGCCAGATATCGGTGGTCGACGCGACAGCAGTTCGC
* *
58921905 CGAATTTTGGAAAATGGGAAAGAGTTTTGGATG-GAAAATTTTGGTTTTTTTGGAGAAGTGCAGA
508 CGAATTCTGGAAAAGGGGAAAGAGTTTTGGA-GAGAAAATTTTGGTTTTTTTGGAGAAGTGCAGA
* * *
58921969 AAT-TAGGCTATTTTTTAAAAAAAATTAACTTAAATAGGCCCTACGAAATGGTGTCGTTTTGGGC
572 AATATA-GCTA--TTTTAAAAAAAATTGACTTAAATAGGCCCTACGAAACGGCGTCGTTTTGGGC
* * * * * * * *
58922033 CAGTGCTCCAGAGGACAAAATGGCGTTGTTTAGCCTCTTGACCCGTGCGTGCGATCCAGCTTGCC
634 CAGTGCTCCAGACGACAAAA-CGCGTCGTTTAGCC-CTTGACCCGCGCGCGCGACCCAACCTGCC
* * ** *
58922098 AGCGGATCCGCGCGTTTTCAACTTTTGGGTTATAAATGCAGCATGTCCTTCCGATTTTTCCACTT
697 AGGGGATCAGCGCGTTTTCAACTTTTGGGTTATTTATGCAGCATGTCCTTCCGATTTTTCCACAT
* *
58922163 ATTTTTATTAGATCC---------TTTTTGTTTATTTTATTTCGGCCTGATAATTTTGTTTTCAG
762 ATTTTAATTAGATCCTTTTTTTTATTTTTGTTTCTTTTATTTCGGCCTGATAATTTTGTTTTCAG
*
58922219 CAAAATAGAAACCCTAGCCTCACCA
827 CAAAATAGAAACCCTAGCCCCACCA
* *
58922244 CTAGCCGCACCACCTCTTCGCGCCGTACCCTCAACGTGCCGTCTGACACCTTTCTGCCATCGTTA
1 CTAGCCGCACCACCTCTTCGCGCCGTACCCTCCACGTGCCGTCTGACACCTTTCTGCCGTCGTTA
* * *
58922309 CCTGCAAGGAAGAACAGACATGCAAAGTAGCAACAGAGAAACAGTAGCAAAGAGAAACAATAAAC
66 CCTGCAAGGAAGAACAGACACGCAAAGCAGCAACAGAGAAACAGTAGCAAAGAGAAATAATAAAC
*** *
58922374 AATGTAATATTGGCAGGCTGCGGATTGTAACGTTTTCAAAAAAAGAGAGAAATACACAAATTTTG
131 AATGTAATATTGGCAGGCCATGGATTGTAACGTTTTCAAAAAAAGGGAGAAATACACAAATTTTG
* * *
58922439 AATAAACAAAAAAAAACAAATTCAAAGCATACAAATGAAAAATATAGCAACCAAGCAAAGAAAAA
196 AATAAACAAAAAAGAACAGATTCAAAGCATACAAACGAAAAATATAGCAACCAAGCAAAGAAAAA
* * * * *
58922504 GTGAGAAACGTGC-AT--T--T-TT-A-TTTT-CTTT-GTTTTTTTCTCTTTTTTTGAAACCATT
261 GTGAGAAACGTGCAATGGTCCTCTTCATTTTTATTTTCTTTTTTTTTTCTTTTTTTTAAACCGTT
* * * *
58922559 TATAGATACATATATTTCTTTTTTAATACTGTATATACATATATATGTATTTCAAAGTTGTATGA
326 TATACATACAAATATTTCTTTTTTAATACTGTGTATACATATATA-GTATTTCAAAGGTGTATGA
* * *** * * *
58922624 AAAGAGAAATTTACCCCATTCTCTTTGATTTCAATGAAAAAAGAGACTCTTGGCCTTCCGGTCGC
390 AAAGAGAAACTTA-CCCTTTCTCTTTGATTTCACCAAAAAAAGGGACTTTTGGCCTTCCAGTCGC
* ** * ** * * * * * * *
58922689 CACCGACGGTAGCACCGTCGCAAGATATCACTAGCCGATGCGACAACGGTTTGCCAAATTCTGGA
454 TACCGACGACAGCACCGTCGCCAGATATCGGTGGTCGACGCGACAGCAGTTCGCCGAATTCTGGA
* *
58922754 AAAGGGGAAAGAGTTTTGGAGATAAAATTTTGGTTTTTTTTGGAGAAGTGCGGAAATATAGCTAT
519 AAAGGGGAAAGAGTTTTGGAGAGAAAATTTTGG-TTTTTTTGGAGAAGTGCAGAAATATAGCTAT
* * * * *** *
58922819 TTTAAGAAAAATTAACTTAAATAGG-CGTACGACAC-GCTGTCGTTTTATACCAATGCTCCAGAC
583 TTTAAAAAAAATTGACTTAAATAGGCCCTACGAAACGGC-GTCGTTTTGGGCCAGTGCTCCAGAC
* * * *
58922882 GACAAAACCGTGTCGTTTAGCCCATTGACCCGAGCGTGCGACCCAACCTGCCATGGGATCAGCGC
647 GACAAAA-CGCGTCGTTTAGCCC-TTGACCCGCGCGCGCGACCCAACCTGCCAGGGGATCAGCGC
* * * ** *
58922947 ATTTTTAACTTTTGGGTTATTTATGGAGCATGTCCTTCCGCCTTTTCCAGATATTTTAATTAGAT
710 GTTTTCAACTTTTGGGTTATTTATGCAGCATGTCCTTCCGATTTTTCCACATATTTTAATTAGAT
*
58923012 CC-TTTTTTTATTTTTGTTTCTTTTATTTCGGCCTGATAATTTTGTTTTCAGCAAAATAAAAACC
775 CCTTTTTTTTATTTTTGTTTCTTTTATTTCGGCCTGATAATTTTGTTTTCAGCAAAATAGAAACC
58923076 CTAG--CC-CCA
840 CTAGCCCCACCA
* * *
58923085 C---CCGAACCACCTCTTCGCGCCGTACCCTCCACGTGCCGTCTGACACCTTTCTACCGTCATTA
1 CTAGCCGCACCACCTCTTCGCGCCGTACCCTCCACGTGCCGTCTGACACCTTTCTGCCGTCGTTA
** * *
58923147 CCTTTAAGGAAGAACAGACATGCAAAGCAGCAACAGAGAAACAGTAGCAAAGGGAAATAATAAAC
66 CCTGCAAGGAAGAACAGACACGCAAAGCAGCAACAGAGAAACAGTAGCAAAGAGAAATAATAAAC
* * *
58923212 AATGTAATATTGGCTGGCCATGGATTGCAACATTTTCAAAAAAAAGGGAGAAATACACAAATTTT
131 AATGTAATATTGGCAGGCCATGGATTGTAACGTTTTC-AAAAAAAGGGAGAAATACACAAATTTT
* *
58923277 GAATAAACAAAAAAGAACAGATTCAAAGCATACAAACAAAAAATATATCAACCAAGCAAAGAAAA
195 GAATAAACAAAAAAGAACAGATTCAAAGCATACAAACGAAAAATATAGCAACCAAGCAAAGAAAA
* *
58923342 AGTGAGAAACGTGCAAAGGTCCTCTTCATTTTTATTTTCTTTGTTTTCTCTTTTTTTTTTTGAAA
260 AGTGAGAAACGTGCAATGGTCCTCTTCATTTTTATTTTCTTT-TTTT-T-TTCTTTTTTTT-AAA
* *
58923407 CCATTTATACATACAAATATTTCTTTTTTCATACTGTGTATACATATATATATGTATTTCAAAGG
321 CCGTTTATACATACAAATATTTCTTTTTTAATACTGTGTATAC--ATATATA-GTATTTCAAAGG
*
58923472 TGTATGAAAAGAGAAACTTACCCTTTTCTCTTTGATTTCACC-GAAAAAGGGACTTTTGGCCTTC
383 TGTATGAAAAGAGAAACTTACCC-TTTCTCTTTGATTTCACCAAAAAAAGGGACTTTTGGCCTTC
* ** * ** * * * *
58923536 CAGACGCTAATGACGGCAGTGCCATCGCCAGATACCGGT-GTCCAACGCGACATC-GATTCGCCG
447 CAGTCGCTACCGACGACAGCACCGTCGCCAGATATCGGTGGT-CGACGCGACAGCAG-TTCGCCG
* * *
58923599 GATTCTGGAAAAAGGGAAAGAGTTTTGGAGAGAAAATTTTGGTGTTTTTTGGAAAAGTGCA-AAA
510 AATTCTGGAAAAGGGGAAAGAGTTTTGGAGAGAAAATTTTGGT-TTTTTTGGAGAAGTGCAGAAA
***** * * **
58923663 -ATGAGGCTATTTTAAATTTTTTTTTAACTTAAATAGGCCCTATGAAACAACGTCGTTTTGGGCC
574 TAT-A-GCTATTTTAAA--AAAAATTGACTTAAATAGGCCCTACGAAACGGCGTCGTTTTGGGCC
* * * *
58923727 AGTGCTCCAGACAACAAAATGGCGTCGTTTAGACCCTTGACCCGCGCTCGCGACCCAACCTACCA
635 AGTGCTCCAGACGACAAAA-CGCGTCGTTTAG-CCCTTGACCCGCGCGCGCGACCCAACCTGCCA
* * * *
58923792 GGGGCTTA-CACGTTTTCAACTTTTGGGTCATTTATGCAGCATGTCCTTCCGATTTTTCCACATA
698 GGGGATCAGCGCGTTTTCAACTTTTGGGTTATTTATGCAGCATGTCCTTCCGATTTTTCCACATA
* *
58923856 TTTTAATTAGATCCTTTCTGTTTATTTTTGTTTCTTTTTATCTCGGCCTGATAATTTTGTTTTCA
763 TTTTAATTAGATCCTTT-TTTTTATTTTTGTTTC-TTTTATTTCGGCCTGATAATTTTGTTTTCA
* *
58923921 GCAACATAGAATCCCTAGCCCCACCA
826 GCAAAATAGAAACCCTAGCCCCACCA
* * * *
58923947 CTAGTCGCACCACCTCTTCGCACCGTACCCTCCACGTGCTGCCTGACACCTTTCTGCCGTCGTTA
1 CTAGCCGCACCACCTCTTCGCGCCGTACCCTCCACGTGCCGTCTGACACCTTTCTGCCGTCGTTA
* * * * * * *
58924012 CCTGTAAGGATGAATAGACACACAAAGCAACAACATG-GAAACATTATCAAAGAGAAATAATAAA
66 CCTGCAAGGAAGAACAGACACGCAAAGCAGCAACA-GAGAAACAGTAGCAAAGAGAAATAAT--A
* * * * * *
58924076 AAAAATGTAATATTGGCA-GCCATGGAATGTAACATTTTCTAAAAAAGGGAGAACTACAAAAATT
128 AACAATGTAATATTGGCAGGCCATGGATTGTAACGTTTTCAAAAAAAGGGAGAAATACACAAATT
* *
58924140 TTGAATAAACAAAAAA-AATTACATTCAAAGCATACAAA-GAAAAAATATAGCAACCAAGCAAAG
193 TTGAATAAACAAAAAAGAA-CAGATTCAAAGCATACAAACG-AAAAATATAGCAACCAAGCAAAG
* *
58924203 AAAAAGTGAGAAACGTGCAATGGTCCTCTTCATTTTTAGTTTCTTTTTTTTTTCTTTTTTTTATA
256 AAAAAGTGAGAAACGTGCAATGGTCCTCTTCATTTTTATTTTCTTTTTTTTTTCTTTTTTTTAAA
58924268 CCGTTTATACATACAAATATTTCTTTTTTAATACTGTGTATACATATATA-TATTTCAAAGGTGT
321 CCGTTTATACATACAAATATTTCTTTTTTAATACTGTGTATACATATATAGTATTTCAAAGGTGT
* ** * *
58924332 ATGGAAAGAGAAACTTACCCTATTCTCTTTGATTTCACCAAATAAAATAGACTCTTAGCCTTCCA
386 ATGAAAAGAGAAACTTACCCT-TTCTCTTTGATTTCACCAAA-AAAAGGGACTTTTGGCCTTCCA
* * * * * * *
58924397 GTCGCCACCGACGATAGCACCGTCACCAGATATCGATGGTCGATGCGACAGTAGTTCACCGAATT
449 GTCGCTACCGACGACAGCACCGTCGCCAGATATCGGTGGTCGACGCGACAGCAGTTCGCCGAATT
*
58924462 CTGGAAAAGGGGAAAGAGTTTTGGAGAGAAATTTTTGGTTTTTTTAGGCA-AAGTGCAGAAATAT
514 CTGGAAAAGGGGAAAGAGTTTTGGAGAGAAAATTTTGGTTTTTTT-GG-AGAAGTGCAGAAATAT
* * * *
58924526 AGCTATTTTAAGAAAAATTGACTTAAATAGG-CTTACGACACGGCGTCGTTTTAGGCCAGTGCTC
577 AGCTATTTTAAAAAAAATTGACTTAAATAGGCCCTACGAAACGGCGTCGTTTTGGGCCAGTGCTC
* * *
58924590 CAGACGACAAAACTGTGTCGTTTAGCCCATTGACCCGAGCGCGCGACCCAACCTGCCATGGGATC
642 CAGACGACAAAAC-GCGTCGTTTAGCCC-TTGACCCGCGCGCGCGACCCAACCTGCCAGGGGATC
* * * * *
58924655 AGCGCGTTTTTAACTTTTTGGTTATTTATGCAGCATGTCCTGCCGACTTTTCCAGATATTTTAAT
705 AGCGCGTTTTCAACTTTTGGGTTATTTATGCAGCATGTCCTTCCGATTTTTCCACATATTTTAAT
*
58924720 TAGATCCTTTTTGTTTATTTTTGTTTCTTTTACTTCGGCCTGATAATTTTGTTTTCAGCAAAATA
770 TAGATCCTTTTT-TTTATTTTTGTTTCTTTTATTTCGGCCTGATAATTTTGTTTTCAGCAAAATA
58924785 GAAACCCTAGCCCCACCA
834 GAAACCCTAGCCCCACCA
* * *
58924803 CTAGCAGCACCACCTCTTCACGCCGTACCCTCCACGTGCTGTCTGACACCTTTCTGCCGTCGTTA
1 CTAGCCGCACCACCTCTTCGCGCCGTACCCTCCACGTGCCGTCTGACACCTTTCTGCCGTCGTTA
* * * * *
58924868 CCTACAAGTAAAAACAGACACGCAAAGCAGCAACAGAGAAACAGTAGCAAAGATAAACAATAAAC
66 CCTGCAAGGAAGAACAGACACGCAAAGCAGCAACAGAGAAACAGTAGCAAAGAGAAATAATAAAC
* *
58924933 AATGTAATATTGGCAGGCCATGGATTGTAACGTTTTCAAAAAAAGGAAGAAATACACAAATTTTT
131 AATGTAATATTGGCAGGCCATGGATTGTAACGTTTTCAAAAAAAGGGAGAAATACACAAATTTTG
* *
58924998 AATAAACAAAAAAGAACAGATTCAAACCATACAAACAAAAAATATAGCAACCAAGCAAAGAAAAA
196 AATAAACAAAAAAGAACAGATTCAAAGCATACAAACGAAAAATATAGCAACCAAGCAAAGAAAAA
58925063 GTGAGAAACGTGCAATGGTCCTCTTCATTTTTATTTTCTTTGTTTTCTCTT-TTTTTTTTGAAAC
261 GTGAGAAACGTGCAATGGTCCTCTTCATTTTTATTTTCTTT-TTTT-T-TTCTTTTTTTT-AAAC
*
58925127 CGTTTATACATACAAATATTTCTTTTTTCATACTGTGTATACATATATATATATATGTATTTCAA
322 CGTTTATACATACAAATATTTCTTTTTTAATACTGTGTATAC------ATATATA-GTATTTCAA
* * * *
58925192 AGGTGTATGAAAAGAGAAACTTACCCCTTTCTCTTTGATTTCATCGAAAAAAGGAACTTTTGGCA
380 AGGTGTATGAAAAGAGAAACTTA-CCCTTTCTCTTTGATTTCACCAAAAAAAGGGACTTTTGGCC
* * * * * * * * ** * * *
58925257 TTCTAGCCGCTATCGACGGCAACGCCATCGCTAGATATCGGT-GTCCGACATGGCAAC-GATTCA
444 TTCCAGTCGCTACCGACGACAGCACCGTCGCCAGATATCGGTGGT-CGACGCGACAGCAG-TTCG
* * *
58925320 CCGGATTCTGGAAAAGGGGAATGAGTTTTGGAGAGAAAATTTTGGTGTTTTTTGGAGAAGTGCAA
507 CCGAATTCTGGAAAAGGGGAAAGAGTTTTGGAGAGAAAATTTTGGT-TTTTTTGGAGAAGTGCAG
**** * *
58925385 AAATGAT-GCTATTTTAAAATGTTTTTCACTTAAATAGGCCCTACGAAAC-GCATCGTTTTGGGC
571 AAAT-ATAGCTATTTTAAAA-AAAATTGACTTAAATAGGCCCTACGAAACGGCGTCGTTTTGGGC
* * * * *
58925448 CAGTGCTGCAGACGACAAAACGGCGTCGTTTAGCCCCTTGACCCGCTCGCGCGACCCGACCTACA
634 CAGTGCTCCAGACGACAAAAC-GCGTCGTTTAG-CCCTTGACCCGCGCGCGCGACCCAACCTGCC
*
58925513 AGGGGATCTAG-GCGTTTTCAACTTTTGGGTTATTTATGCAGCATGTCCTTCCGATTTTTCCACT
697 AGGGGATC-AGCGCGTTTTCAACTTTTGGGTTATTTATGCAGCATGTCCTTCCGATTTTTCCACA
58925577 TATTTTAATTAGATCC---------TTTTTGTTTCTTTTATTTCGGCCTGATAATTTTGTTTTCA
761 TATTTTAATTAGATCCTTTTTTTTATTTTTGTTTCTTTTATTTCGGCCTGATAATTTTGTTTTCA
* * * *
58925633 GCAACATAGAAGCCCTATCCCTACCA
826 GCAAAATAGAAACCCTAGCCCCACCA
* * ** *
58925659 CTAGCCACACCACCTCTTCGCGCCGTACCCTCCACGTACTATCTGACACCTTTCTACCGTCGTTA
1 CTAGCCGCACCACCTCTTCGCGCCGTACCCTCCACGTGCCGTCTGACACCTTTCTGCCGTCGTTA
* * * *
58925724 CTTGTAAGGAAGAACAGACACGCAAAGCAGCAACAGAGAAACATTAGCAAAGAGAAATAAAAAAA
66 CCTGCAAGGAAGAACAGACACGCAAAGCAGCAACAGAGAAACAGTAGCAAAGAGAAAT-AATAAA
* * *
58925789 CAATGTAATATTGGCAGGCCATGGATTGTAACGTCTTCAAAAAAAGGGAGAACTACAGAAATTTC
130 CAATGTAATATTGGCAGGCCATGGATTGTAACGTTTTCAAAAAAAGGGAGAAATACACAAATTT-
* *
58925854 T-AATAAACAAAAAA-AAAATGGATTCAAAGCATACAAACGAAAAATATAGCAACCATGCAAAGA
194 TGAATAAACAAAAAAGAACA--GATTCAAAGCATACAAACGAAAAATATAGCAACCAAGCAAAGA
* *
58925917 AAAAGTGAGAAACGTGCAATGGTCGTCTTCATTTTTATTTTCTTTGTTTTTTCTTTTTTTTTAAA
257 AAAAGTGAGAAACGTGCAATGGTCCTCTTCATTTTTATTTTCTTTTTTTTTTC-TTTTTTTTAAA
58925982 CCGTTTATACATACAAATATTTCTTTTTTAATACTGTGTATACATATATATGTATTTCAAAGGTG
321 CCGTTTATACATACAAATATTTCTTTTTTAATACTGTGTATACATATATA-GTATTTCAAAGGTG
* *
58926047 TATAAAAAGAGAAACTTACCCCTTTCTCTTTGATTTAACCGAAAAAAATGGG-CTTTTGGCCTTC
385 TATGAAAAGAGAAACTTA-CCCTTTCTCTTTGATTTCACC-AAAAAAA-GGGACTTTTGGCCTTC
* ** * * * * * *
58926111 CAATCGCTGTCGACGACAGCGA-TGTCACC-GAATATCGGTGGCCGACGCGACAGCGGTTC-ACA
447 CAGTCGCTACCGACGACAGC-ACCGTCGCCAG-ATATCGGTGGTCGACGCGACAGCAGTTCGCCG
* * *
58926173 AGATTCTGGAAAAGGGGAAAAAGTTTTGGAGAAAAAATTTTGATTTTTTTGGAGAAGTGCAGAAA
510 A-ATTCTGGAAAAGGGGAAAGAGTTTTGGAGAGAAAATTTTGGTTTTTTTGGAGAAGTGCAGAAA
* * *
58926238 TGA-GGATATTTTAAAAAAAATTTGACTTAAATAGGCCCTACGAAATGGCGTCGTTTTGGGCCAG
574 T-ATAGCTATTTTAAAAAAAA-TTGACTTAAATAGGCCCTACGAAACGGCGTCGTTTTGGGCCAG
* * * * ** * * *
58926302 TGCTCCAGACGACAAAA-GATGGCATTTAGCCCCTTGATCCATGCGCACGACCTAACCTGCAAGG
637 TGCTCCAGACGACAAAACG-CGTCGTTTAG-CCCTTGACCCGCGCGCGCGACCCAACCTGCCAGG
* * * * * * *
58926366 GAATCCA-CACGCTTTT-AACTTTTGGGTTCTTTATGTAGGATGTCCTTCTGATTTATCCACATA
700 GGAT-CAGCGCG-TTTTCAACTTTTGGGTTATTTATGCAGCATGTCCTTCCGATTTTTCCACATA
* * *
58926429 TTTTAATTAGA---TTCTTTTT-TTTTTGTTTCTTTTATTTCTGCCTGATAATTTTGTTTTAAGC
763 TTTTAATTAGATCCTTTTTTTTATTTTTGTTTCTTTTATTTCGGCCTGATAATTTTGTTTTCAGC
*
58926490 AAAATAGAAACCCTAACCCCACCA
828 AAAATAGAAACCCTAGCCCCACCA
** * * *
58926514 CTAGCCGCACCACCTCTTCGCGTTGTTCCCTCTACGTGCCGTCTGACACCTTTCTACCGTCGTTA
1 CTAGCCGCACCACCTCTTCGCGCCGTACCCTCCACGTGCCGTCTGACACCTTTCTGCCGTCGTTA
* * * * *
58926579 CCTGCAAGGAATAACAGACACGCAAAGCAACAATATAGAAATAGTAGCAAAGAGAAATAATAAAC
66 CCTGCAAGGAAGAACAGACACGCAAAGCAGCAACAGAGAAACAGTAGCAAAGAGAAATAATAAAC
* * * *
58926644 AATGTAATATTGCCAGGCTATAGATTGTAACGTTTTAAAAAAAAGGGGAGAAATACACAAATTTT
131 AATGTAATATTGGCAGGCCATGGATTGTAACGTTTTCAAAAAAA-GGGAGAAATACACAAATTTT
* * *
58926709 GAATAAAGAAAAAAGAACAGATTCAAAGCATACGAACGAAAAATATTGCAACCAAGC--------
195 GAATAAACAAAAAAGAACAGATTCAAAGCATACAAACGAAAAATATAGCAACCAAGCAAAGAAAA
* * *
58926766 ------AAA---GC-----TCCTCTTCATTTTTATTTTCTATATTTTTTCATTTTTTTGAAACCG
260 AGTGAGAAACGTGCAATGGTCCTCTTCATTTTTATTTTCTTTTTTTTTTC-TTTTTTTTAAACCG
* *
58926817 TTTATACATACAAATATTTCTTTTTTAATAATGTGTATACATATATATGTATTTCAAAGGTGTGT
324 TTTATACATACAAATATTTCTTTTTTAATACTGTGTATACATATATA-GTATTTCAAAGGTGTAT
* * * *
58926882 AAAAAGAGAAACTTACCCTTTTCTCTTTGATTTCACCGAAAAAAGGGACTTTTGGCCTTTCGGTC
388 GAAAAGAGAAACTTACCC-TTTCTCTTTGATTTCACCAAAAAAAGGGACTTTTGGCCTTCCAGTC
** * * * * * * * * *
58926947 GCTGTCGACGATAGCGA-CATCACCGGATACCGGTGGCCGACACGGCAGCAGTTC-CCTAGATTC
452 GCTACCGACGACAGC-ACCGTCGCCAGATATCGGTGGTCGACGCGACAGCAGTTCGCCGA-ATTC
* * * *
58927010 TGGAAAAGTGGG-AAGAGTTTTGGAGGGAAAATTTTAGTTTTTTTTGGAGAAGTGCAGAAATGTG
515 TGGAAAAG-GGGAAAGAGTTTTGGAGAGAAAATTTT-GGTTTTTTTGGAGAAGTGCAGAAATATA
*** *
58927074 GCTATTTTAAAAAAAATTGACTTAAATAGGCCCTACGAAACTATGTTGTTTTGGGCCAGTGCTCC
578 GCTATTTTAAAAAAAATTGACTTAAATAGGCCCTACGAAACGGCGTCGTTTTGGGCCAGTGCTCC
* * * * * * *
58927139 AGATGACAAAACGGCGTCGTGTAGCCCATTGACCCCCGCGCGGGACCTAACATGCCATGGGATTC
643 AGACGACAAAAC-GCGTCGTTTAGCCC-TTGACCCGCGCGCGCGACCCAACCTGCCAGGGGA-TC
*
58927204 -GCGCGTTTTCAACTTTTGGGTTCTTTATGCAG
705 AGCGCGTTTTCAACTTTTGGGTTATTTATGCAG
58927236 AATGCACCTT
Statistics
Matches: 7828, Mismatches: 1097, Indels: 657
0.82 0.11 0.07
Matches are distributed among these distances:
811 1 0.00
812 69 0.01
813 76 0.01
814 4 0.00
815 3 0.00
816 2 0.00
818 1 0.00
819 3 0.00
820 5 0.00
821 4 0.00
827 4 0.00
828 19 0.00
829 10 0.00
830 9 0.00
831 169 0.02
832 239 0.03
833 7 0.00
834 5 0.00
835 10 0.00
836 166 0.02
837 33 0.00
838 318 0.04
839 226 0.03
840 365 0.05
841 400 0.05
842 38 0.00
843 61 0.01
844 120 0.02
845 56 0.01
846 363 0.05
847 308 0.04
848 195 0.02
849 16 0.00
850 378 0.05
851 199 0.03
852 16 0.00
853 51 0.01
854 226 0.03
855 394 0.05
856 573 0.07
857 320 0.04
858 380 0.05
859 362 0.05
860 23 0.00
861 60 0.01
862 218 0.03
863 46 0.01
864 23 0.00
865 506 0.06
866 386 0.05
867 121 0.02
868 20 0.00
869 4 0.00
870 1 0.00
871 2 0.00
872 1 0.00
876 2 0.00
877 2 0.00
878 4 0.00
879 4 0.00
880 11 0.00
881 22 0.00
882 9 0.00
883 9 0.00
885 2 0.00
886 3 0.00
887 4 0.00
888 79 0.01
889 62 0.01
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (851 bp):
CTAGCCGCACCACCTCTTCGCGCCGTACCCTCCACGTGCCGTCTGACACCTTTCTGCCGTCGTTA
CCTGCAAGGAAGAACAGACACGCAAAGCAGCAACAGAGAAACAGTAGCAAAGAGAAATAATAAAC
AATGTAATATTGGCAGGCCATGGATTGTAACGTTTTCAAAAAAAGGGAGAAATACACAAATTTTG
AATAAACAAAAAAGAACAGATTCAAAGCATACAAACGAAAAATATAGCAACCAAGCAAAGAAAAA
GTGAGAAACGTGCAATGGTCCTCTTCATTTTTATTTTCTTTTTTTTTTCTTTTTTTTAAACCGTT
TATACATACAAATATTTCTTTTTTAATACTGTGTATACATATATAGTATTTCAAAGGTGTATGAA
AAGAGAAACTTACCCTTTCTCTTTGATTTCACCAAAAAAAGGGACTTTTGGCCTTCCAGTCGCTA
CCGACGACAGCACCGTCGCCAGATATCGGTGGTCGACGCGACAGCAGTTCGCCGAATTCTGGAAA
AGGGGAAAGAGTTTTGGAGAGAAAATTTTGGTTTTTTTGGAGAAGTGCAGAAATATAGCTATTTT
AAAAAAAATTGACTTAAATAGGCCCTACGAAACGGCGTCGTTTTGGGCCAGTGCTCCAGACGACA
AAACGCGTCGTTTAGCCCTTGACCCGCGCGCGCGACCCAACCTGCCAGGGGATCAGCGCGTTTTC
AACTTTTGGGTTATTTATGCAGCATGTCCTTCCGATTTTTCCACATATTTTAATTAGATCCTTTT
TTTTATTTTTGTTTCTTTTATTTCGGCCTGATAATTTTGTTTTCAGCAAAATAGAAACCCTAGCC
CCACCA
Found at i:58927669 original size:29 final size:29
Alignment explanation
Indices: 58927626--58927769 Score: 143
Period size: 29 Copynumber: 4.9 Consensus size: 29
58927616 TTTTAATTAA
* *
58927626 AAAATTGCAATTTGACCCCTAAACTTTTCT
1 AAAATTACATTTTGACCCCTAAA-TTTTCT
58927656 AAAATTACA-TTTGA-CCCTAAACTTTT-T
1 AAAATTACATTTTGACCCCTAAA-TTTTCT
* * *
58927683 AAAATTACATTTTGACCCTTATATTTTTT
1 AAAATTACATTTTGACCCCTAAATTTTCT
*
58927712 AAAAGTACATTTTGACCCTCTAAATTTTCT
1 AAAATTACATTTTGACCC-CTAAATTTTCT
* *
58927742 CGAAATTACACTTTTG-CCCCAAAATTTT
1 -AAAATTACA-TTTTGACCCCTAAATTTT
58927770 TGCTGCGTTT
Statistics
Matches: 98, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
27 10 0.10
28 21 0.21
29 28 0.29
30 24 0.24
31 10 0.10
32 5 0.05
ACGTcount: A:0.33, C:0.20, G:0.06, T:0.41
Consensus pattern (29 bp):
AAAATTACATTTTGACCCCTAAATTTTCT
Found at i:58928121 original size:21 final size:21
Alignment explanation
Indices: 58928080--58928132 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
58928070 GAAAAGTCGC
*
58928080 AAGCAACCAAAAAGAAAAGCA
1 AAGCAAACAAAAAGAAAAGCA
**
58928101 AAGCAAACAAAAAGAGTAGCA
1 AAGCAAACAAAAAGAAAAGCA
58928122 AA--AAACAAAAA
1 AAGCAAACAAAAA
58928133 AACAAAAGAG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 9 0.31
21 20 0.69
ACGTcount: A:0.70, C:0.15, G:0.13, T:0.02
Consensus pattern (21 bp):
AAGCAAACAAAAAGAAAAGCA
Found at i:58928299 original size:25 final size:23
Alignment explanation
Indices: 58928265--58928318 Score: 81
Period size: 25 Copynumber: 2.3 Consensus size: 23
58928255 GCAAGGTCGA
*
58928265 AAAAAGGAAAAAGAAATAGAGAAG
1 AAAAAGGAAAAAGAAAAAGAG-AG
58928289 AAGAAAGGAAAAAGAAAAAGAGAG
1 AA-AAAGGAAAAAGAAAAAGAGAG
58928313 AAAAAG
1 AAAAAG
58928319 AAAGAAATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 4 0.14
24 6 0.21
25 18 0.64
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.02
Consensus pattern (23 bp):
AAAAAGGAAAAAGAAAAAGAGAG
Found at i:58928309 original size:17 final size:16
Alignment explanation
Indices: 58928274--58928321 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 16
58928264 AAAAAAGGAA
*
58928274 AAAGAAATAGAGAAGAAG
1 AAAGAAA-A-AGAAAAAG
58928292 AAAGGAAAAAGAAAAAG
1 AAA-GAAAAAGAAAAAG
*
58928309 AGAGAAAAAGAAA
1 AAAGAAAAAGAAA
58928322 GAAATAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 10 0.37
17 9 0.33
18 4 0.15
19 4 0.15
ACGTcount: A:0.73, C:0.00, G:0.25, T:0.02
Consensus pattern (16 bp):
AAAGAAAAAGAAAAAG
Found at i:58928320 original size:27 final size:25
Alignment explanation
Indices: 58928267--58928322 Score: 76
Period size: 27 Copynumber: 2.2 Consensus size: 25
58928257 AAGGTCGAAA
* *
58928267 AAAGGAAAAAGAAATAGAGAAGAAG
1 AAAGGAAAAAGAAAGAGAGAAAAAG
58928292 AAAGGAAAAAGAAAAAGAGAGAAAAAG
1 AAAGGAAAAAG--AAAGAGAGAAAAAG
58928319 AAAG
1 AAAG
58928323 AAATAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 11 0.41
27 16 0.59
ACGTcount: A:0.71, C:0.00, G:0.27, T:0.02
Consensus pattern (25 bp):
AAAGGAAAAAGAAAGAGAGAAAAAG
Found at i:58928825 original size:20 final size:21
Alignment explanation
Indices: 58928800--58928839 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
58928790 AAAAAATATT
58928800 CAAAAATCCTCGT-TTTTAAA
1 CAAAAATCCTCGTATTTTAAA
*
58928820 CAAAAATTCTCGTATTTTAA
1 CAAAAATCCTCGTATTTTAA
58928840 TAAAATCCCG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.40, C:0.17, G:0.05, T:0.38
Consensus pattern (21 bp):
CAAAAATCCTCGTATTTTAAA
Found at i:58929138 original size:19 final size:18
Alignment explanation
Indices: 58929114--58929219 Score: 78
Period size: 19 Copynumber: 5.8 Consensus size: 18
58929104 TCAGATATTT
58929114 TCGTGTTTCTAAAAAATTC
1 TCGTGTTTC-AAAAAATTC
58929133 TCGTGTTTCACAAAAATT-
1 TCGTGTTTCA-AAAAATTC
*
58929151 TCGTCTTTTC--AAAATTC
1 TCGT-GTTTCAAAAAATTC
* *
58929168 CCGTGTTTC-AAAAATTT
1 TCGTGTTTCAAAAAATTC
*
58929185 TCATGTTTTCAAAAAAATTTC
1 TCGTG-TTTC-AAAAAA-TTC
*
58929206 TCTTG-TTCAAAAAA
1 TCGTGTTTCAAAAAA
58929220 ATTTTTGTGT
Statistics
Matches: 71, Mismatches: 8, Indels: 17
0.74 0.08 0.18
Matches are distributed among these distances:
16 10 0.14
17 12 0.17
18 15 0.21
19 23 0.32
20 5 0.07
21 6 0.08
ACGTcount: A:0.33, C:0.17, G:0.08, T:0.42
Consensus pattern (18 bp):
TCGTGTTTCAAAAAATTC
Found at i:58929173 original size:35 final size:34
Alignment explanation
Indices: 58929126--58929198 Score: 101
Period size: 34 Copynumber: 2.1 Consensus size: 34
58929116 GTGTTTCTAA
* *
58929126 AAAATTCTCGTGTTTCACAAAAATTTCGTCTTTTC
1 AAAATTCCCGTGTTTCA-AAAAATTTCATCTTTTC
* *
58929161 AAAATTCCCGTGTTTCAAAAATTTTCATGTTTTC
1 AAAATTCCCGTGTTTCAAAAAATTTCATCTTTTC
58929195 AAAA
1 AAAA
58929199 AAATTTCTCT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
34 18 0.53
35 16 0.47
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.41
Consensus pattern (34 bp):
AAAATTCCCGTGTTTCAAAAAATTTCATCTTTTC
Found at i:58929203 original size:53 final size:53
Alignment explanation
Indices: 58929115--58929217 Score: 138
Period size: 53 Copynumber: 1.9 Consensus size: 53
58929105 CAGATATTTT
* *
58929115 CGTGTTTCTAAAAAATTCTCGTGTTTCACAAAAATTTCGTCTT-TTCAAAATTCC
1 CGTGTTTC-AAAAAATTCTCATGTTTCAAAAAAATTTC-TCTTGTTCAAAATTCC
*
58929169 CGTGTTTC-AAAAATTTTCATGTTTTCAAAAAAATTTCTCTTGTTCAAAA
1 CGTGTTTCAAAAAATTCTCATG-TTTCAAAAAAATTTCTCTTGTTCAAAA
58929218 AAATTTTTGT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
52 15 0.34
53 21 0.48
54 8 0.18
ACGTcount: A:0.32, C:0.17, G:0.09, T:0.42
Consensus pattern (53 bp):
CGTGTTTCAAAAAATTCTCATGTTTCAAAAAAATTTCTCTTGTTCAAAATTCC
Found at i:58929230 original size:18 final size:19
Alignment explanation
Indices: 58929177--58929231 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
58929167 CCCGTGTTTC
*
58929177 AAAAATTTTCATGTTTTCAA
1 AAAAATTTTC-TGTGTTCAA
58929197 AAAAATTTCTCT-TGTTCAA
1 AAAAATTT-TCTGTGTTCAA
58929216 AAAAATTTT-TGTGTTC
1 AAAAATTTTCTGTGTTC
58929232 TTTTTTTAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
17 1 0.03
18 6 0.19
19 14 0.44
20 9 0.28
21 2 0.06
ACGTcount: A:0.36, C:0.11, G:0.07, T:0.45
Consensus pattern (19 bp):
AAAAATTTTCTGTGTTCAA
Found at i:58929460 original size:15 final size:15
Alignment explanation
Indices: 58929442--58929471 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
58929432 AAAAAATTCG
58929442 CGTGTTTAAAAAAAT
1 CGTGTTTAAAAAAAT
*
58929457 CGTGTTTCAAAAAAT
1 CGTGTTTAAAAAAAT
58929472 TTTCATGTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.10, G:0.13, T:0.33
Consensus pattern (15 bp):
CGTGTTTAAAAAAAT
Found at i:58929481 original size:18 final size:18
Alignment explanation
Indices: 58929397--58929472 Score: 63
Period size: 17 Copynumber: 4.4 Consensus size: 18
58929387 TGTTTTTTTT
58929397 AAAAATTCTCGTGTTTC-
1 AAAAATTCTCGTGTTTCA
* *
58929414 ACAAA-TCTTCATGTTTTCA
1 AAAAATTC-TCGTG-TTTCA
*
58929433 AAAAATTCGCGTGTTT-A
1 AAAAATTCTCGTGTTTCA
*
58929450 AAAAA--ATCGTGTTTCA
1 AAAAATTCTCGTGTTTCA
58929466 AAAAATT
1 AAAAATT
58929473 TTCATGTTTT
Statistics
Matches: 45, Mismatches: 7, Indels: 13
0.69 0.11 0.20
Matches are distributed among these distances:
15 7 0.16
16 8 0.18
17 14 0.31
18 7 0.16
19 7 0.16
20 2 0.04
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.37
Consensus pattern (18 bp):
AAAAATTCTCGTGTTTCA
Found at i:58929507 original size:18 final size:18
Alignment explanation
Indices: 58929426--58929510 Score: 61
Period size: 18 Copynumber: 4.7 Consensus size: 18
58929416 AAATCTTCAT
58929426 GTTTTC-AAAAAATTCGC
1 GTTTTCAAAAAAATTCGC
*
58929443 GTGTTT-AAAAAAA-TCGT
1 GT-TTTCAAAAAAATTCGC
* **
58929460 G-TTTCAAAAAATTTTCAT
1 GTTTTCAAAAAA-ATTCGC
*
58929478 GTTTTTAAAAAAAAATTCGC
1 G-TTTT-CAAAAAAATTCGC
58929498 GTTTTCAAAAAAA
1 GTTTTCAAAAAAA
58929511 AATCTCGTGT
Statistics
Matches: 52, Mismatches: 8, Indels: 15
0.69 0.11 0.20
Matches are distributed among these distances:
15 3 0.06
16 6 0.12
17 6 0.12
18 20 0.38
19 4 0.08
20 7 0.13
21 6 0.12
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (18 bp):
GTTTTCAAAAAAATTCGC
Found at i:58929525 original size:20 final size:20
Alignment explanation
Indices: 58929484--58929526 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
58929474 TCATGTTTTT
*
58929484 AAAAAAAAATTCGCGTTTTC
1 AAAAAAAAATTCGCGTTGTC
*
58929504 AAAAAAAAA-TCTCGTGTGTC
1 AAAAAAAAATTCGCGT-TGTC
58929524 AAA
1 AAA
58929527 TTTTCGTGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.49, C:0.14, G:0.12, T:0.26
Consensus pattern (20 bp):
AAAAAAAAATTCGCGTTGTC
Found at i:58929561 original size:19 final size:18
Alignment explanation
Indices: 58929524--58929566 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
58929514 CTCGTGTGTC
* *
58929524 AAATTTTCGTGTTTTCAA
1 AAATTTTCGTATTTCCAA
58929542 AAATTTCTCGTATTTCC-A
1 AAATTT-TCGTATTTCCAA
58929560 AAATTTT
1 AAATTTT
58929567 TAACTTTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 1 0.05
18 13 0.59
19 8 0.36
ACGTcount: A:0.30, C:0.14, G:0.07, T:0.49
Consensus pattern (18 bp):
AAATTTTCGTATTTCCAA
Found at i:58929689 original size:17 final size:17
Alignment explanation
Indices: 58929677--58929877 Score: 153
Period size: 17 Copynumber: 11.8 Consensus size: 17
58929667 AAAAAAAATG
58929677 TCGTGTTTTAAAAATTT
1 TCGTGTTTTAAAAATTT
58929694 TCGTGTTTCT-AAAA-TT
1 TCGTGTTT-TAAAAATTT
* *
58929710 TCACTGTTTTAAAAATTC
1 TC-GTGTTTTAAAAATTT
* *
58929728 TCGTG-TTTCAAAATTG
1 TCGTGTTTTAAAAATTT
58929744 TCGTGTTTTAAAAATTT
1 TCGTGTTTTAAAAATTT
58929761 TCGTGTTTCT-AAAATTT
1 TCGTGTTT-TAAAAATTT
* * **
58929778 TCCTGTTTTAAGAATCC
1 TCGTGTTTTAAAAATTT
* * *
58929795 TCGTGTTTCAAAAAAAATG
1 TCGTGTTT--TAAAAATTT
*
58929814 TCGCGTTTTAAAAATTT
1 TCGTGTTTTAAAAATTT
*
58929831 TCGTG-TTTAAAAATTC
1 TCGTGTTTTAAAAATTT
* * * *
58929847 CCGTG-CTTCAAAATTC
1 TCGTGTTTTAAAAATTT
58929863 TCGTGTTTTTAAAAA
1 TCGTG-TTTTAAAAA
58929878 AAAAGGTTCT
Statistics
Matches: 144, Mismatches: 29, Indels: 21
0.74 0.15 0.11
Matches are distributed among these distances:
16 47 0.33
17 75 0.52
18 11 0.08
19 11 0.08
ACGTcount: A:0.29, C:0.13, G:0.12, T:0.45
Consensus pattern (17 bp):
TCGTGTTTTAAAAATTT
Found at i:58929723 original size:34 final size:33
Alignment explanation
Indices: 58929671--58929838 Score: 178
Period size: 34 Copynumber: 4.9 Consensus size: 33
58929661 TGTTTCAAAA
* *
58929671 AAAATGTCGTGTTTTAAAAATTTTCGTGTTTCT
1 AAAATTTCCTGTTTTAAAAATTTTCGTGTTTCT
*
58929704 AAAATTTCACTGTTTTAAAAATTCTCGTGTTTC-
1 AAAATTTC-CTGTTTTAAAAATTTTCGTGTTTCT
*
58929737 AAAATTGTCGTGTTTTAAAAATTTTCGTGTTTCT
1 AAAATT-TCCTGTTTTAAAAATTTTCGTGTTTCT
* ** *
58929771 AAAATTTTCCTGTTTTAAGAATCCTCGTGTTTCAAAA
1 AAAA-TTTCCTGTTTTAAAAATTTTCGTGTTTC---T
*
58929808 AAAATGTCGC-GTTTTAAAAATTTTCGTGTTT
1 AAAATTTC-CTGTTTTAAAAATTTTCGTGTTT
58929839 AAAAATTCCC
Statistics
Matches: 113, Mismatches: 14, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
33 35 0.31
34 50 0.44
35 2 0.02
36 21 0.19
37 5 0.04
ACGTcount: A:0.29, C:0.12, G:0.13, T:0.46
Consensus pattern (33 bp):
AAAATTTCCTGTTTTAAAAATTTTCGTGTTTCT
Found at i:58929751 original size:67 final size:68
Alignment explanation
Indices: 58929658--58929838 Score: 267
Period size: 67 Copynumber: 2.6 Consensus size: 68
58929648 AAACAGAAAA
58929658 TCGTGTTTCAAAAAAAATGTCGTGTTTTAAAAATTTTCGTGTTTCTAAAA-TTTCACTGTTTTAA
1 TCGTGTTTC--AAAAAATGTCGTGTTTTAAAAATTTTCGTGTTTCTAAAATTTTC-CTGTTTTAA
*
58929722 AAATTC
63 AAATCC
* *
58929728 TCGTGTTTC-AAAATTGTCGTGTTTTAAAAATTTTCGTGTTTCTAAAATTTTCCTGTTTTAAGAA
1 TCGTGTTTCAAAAAATGTCGTGTTTTAAAAATTTTCGTGTTTCTAAAATTTTCCTGTTTTAAAAA
58929792 TCC
66 TCC
*
58929795 TCGTGTTTCAAAAAAAATGTCGCGTTTTAAAAATTTTCGTGTTT
1 TCGTGTTTC--AAAAAATGTCGTGTTTTAAAAATTTTCGTGTTT
58929839 AAAAATTCCC
Statistics
Matches: 102, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
67 59 0.58
68 4 0.04
70 39 0.38
ACGTcount: A:0.29, C:0.12, G:0.13, T:0.45
Consensus pattern (68 bp):
TCGTGTTTCAAAAAATGTCGTGTTTTAAAAATTTTCGTGTTTCTAAAATTTTCCTGTTTTAAAAA
TCC
Found at i:58932282 original size:857 final size:857
Alignment explanation
Indices: 58930250--58933674 Score: 4478
Period size: 853 Copynumber: 4.0 Consensus size: 857
58930240 AGGTCGCTAC
* * *
58930250 ATATATGTATTTGAAAGGTGTATAAAAAGAGAAACTTACCCCTTTCTCTTTGATTTCACCGAAAA
1 ATATATGTATTTCAAAGGTGTATGAAAAGAGAAACTTACCCCTTTCTCTTTGATTTCACCAAAAA
* * ** * * * * * * *
58930315 AAATG-ACATTTGGCCTTTCGGTCATCGTCAACGATAGCGACGTCTCCGGATACCGATGGCTGAC
66 AAAGGAACTTTTGGCCTTTCGGTCGCCGTCGACGACAGCGTCATCGCCGGATACCGGTGGCCGAC
* *
58930379 GCGGCAGCGGTTCGCCGGATTCTGGAAAAGGGGAAAGAGTTTTGGAGAGAAAATTTTGGTTTTTT
131 GCGGCATCAGTTCGCCGGATTCTGGAAAAGGGGAAAGAGTTTTGGAGAGAAAATTTTGGTTTTTT
* *
58930444 TTGGAGAAGTGCAGAAATGAGGCTATTTT-TAAAAAATTGACTTAAATAGGCCTTACGAAACGGC
196 TTGGAGAAGTGCAGAAATGAGGCTATTTTAAAAAAAATTGACTTAAATAGGCCCTACGAAACGGC
* * * * * * * * * *
58930508 GTCATTTTGGGTCAGTGCTCCAAACGACGAAACGACATCGTTTAGCCCATTGA-CCACCGTGCGC
261 GTCGTTTTTGGCCACTGCTCCAGACGACAAAACGGCGTCGTTTAGCCC-TTGACCCA-TGCGCGC
* * * * ** *
58930572 GACCTAACCTGCCAAGGGGTCCGCGCGTTTTCAACTTTTGGGTTCTTTATCCAGCATGTCCTTCC
324 GACCCAACCTGCCAAGGGATCCGCGTGTTTTCAACTTTTGGGTTATTTATGTAGCATGTCCTTTC
* *
58930637 GATTTTTCCACATAATTTAATTAGATCCTTTTTGTTTATTTTTGTTTCTTTTATTTCGGCCTAAT
389 GATTTTTCCACATATTTTAATTAGATCCTTTTTGTTTATTTTTGTTTCTTTTATTTCGGCCTGAT
* * * * * *
58930702 AATTTTGATTTCAGCAAAATAGAAACCCTAGCCCCACCACCAGCTGCACTACCTCTTCGCGTCAT
454 AATTTTGTTTTCAGCAAAATAAAAACCCTAGCCCCACCACTAGCCGCACCACCTCTTCGCGCCAT
* * * *
58930767 ACCCTCCCCGTGCCGTCTGACACCTTTCTGCCGTCGTTACCTGTAAGGAAGAACAGACACACAAA
519 ACCCTCCACGTGCCGTCTGACACCTTTCTGCCATCGTTACCTGCAAGGAAGAACAGACACGCAAA
* * *
58930832 GCAGCAACAAAGAAACAGTAGCAAAGAGAAATAATAAACAATGTAATATTGGTAGGCCATGGATT
584 GCAGCAACAGAGAAACAATAGCAAAGAGAAATAATAAACAATGTAATATTGGCAGGCCATGGATT
* * *
58930897 GTAACGTTTTCAAAAAAATGGAGAAATACACAAATTTCGAATAAACAAAAAAGAACATATTGAAA
649 GTAACGTTTTCAAAAAAAGGGAGAAATACACAAATTTTGAATAAACAAAAAAGAACATATTCAAA
* * * *
58930962 GCATACAAACGAAAAATATAGCAACAAAGCAAAGAAACAGTGAGAAACATGCAAAAGTCCTCTTC
714 GCATACAAACGAAAAATATAGCAACCAAGCAAAGAAAAAGTGAGAAACGTGCAAAGGTCCTCTTC
*
58931027 ATTTTTATTTTCTTTGATTTTTCTTTTTTTTTTTGAAATCGTTTATACATACAAATATTTCTTTT
779 ATTTTTATTTTCTTTG----TT-TTTTTTTTTTTGAAACCGTTTATACATACAAATATTTCTTTT
** *
58931092 TTAATACAATGTAT-TTAT
839 TTAATACTGTGTATACTAT
* *
58931110 ATATATGTATTTCAAAGGTGTATGAAAAGAGAAACTTACCCCTTTCTCTTCGATTTCACAAAAAA
1 ATATATGTATTTCAAAGGTGTATGAAAAGAGAAACTTACCCCTTTCTCTTTGATTTCACCAAAAA
* * * * * *
58931175 AAAAGAGACTTTTGGCCTTTCGGTCGCCATCGACGGCAGCGTCGTCGCCGGATACCTGTGGCCAA
66 AAAGGA-ACTTTTGGCCTTTCGGTCGCCGTCGACGACAGCGTCATCGCCGGATACCGGTGGCCGA
* * * *
58931240 CACGGCAACGGTTCTCCGGATTCTGGAAAAGGGGAAAGAGTTTTGGAGAGAAAATTTTGGTTTTT
130 CGCGGCATCAGTTCGCCGGATTCTGGAAAAGGGGAAAGAGTTTTGGAGAGAAAATTTTGGTTTTT
* *
58931305 TTT-GAGAAGTGCAGAAATGAGGCTATTTTAAAAAAAATTGACTTAAATAGGCCCTACAAAATGG
195 TTTGGAGAAGTGCAGAAATGAGGCTATTTTAAAAAAAATTGACTTAAATAGGCCCTACGAAACGG
* * * *
58931369 CGTCGTTTTTGGCCACTGCTCCAGACGACAAAACGGTGTCATTTAGCTCATTGACCCATGCGCAC
260 CGTCGTTTTTGGCCACTGCTCCAGACGACAAAACGGCGTCGTTTAGC-CCTTGACCCATGCGCGC
* * * * * * *
58931434 GACCCAACGTGCC-AGGGATCTGCATTTTTTTAACTTTTGGGTAATTTATGTACCATGTCCTTTC
324 GACCCAACCTGCCAAGGGATCCGCGTGTTTTCAACTTTTGGGTTATTTATGTAGCATGTCCTTTC
* *
58931498 GATTTTTTCACATATTTTAATTAGATCCTTTTTGTTTATTTTTGTTTCTTTTATTTCAGCCTGAT
389 GATTTTTCCACATATTTTAATTAGATCCTTTTTGTTTATTTTTGTTTCTTTTATTTCGGCCTGAT
* * * * * ***
58931563 AA-TTT-TTTTCAAG-AAAATAGAAGCCCTAGCCCCACCACTAGCTGTACCACCTCTTCACGTTG
454 AATTTTGTTTTC-AGCAAAATAAAAACCCTAGCCCCACCACTAGCCGCACCACCTCTTCGCGCCA
* * * *
58931625 TACCCTCCATGTGCCATCTGACACCTTTCTGCCATCATTTCCTGCAAGGAAGAACAGACACGCAA
518 TACCCTCCACGTGCCGTCTGACACCTTTCTGCCATCGTTACCTGCAAGGAAGAACAGACACGCAA
* * * * *
58931690 AGCAGCAATAGAGAAATAGTAGCAAAGAGAAATAATAAACAATGTACTATTGGCAGGCTATAGG-
583 AGCAGCAACAGAGAAACAATAGCAAAGAGAAATAATAAACAATGTAATATTGGCAGGCCAT-GGA
* ** *
58931754 TTGTAACATTTAAAAAAAAAAGGGAGAAATACACAAATTTTGAATAAACAAAAAAGAACAGATTC
647 TTGTAACGTTT-TCAAAAAAAGGGAGAAATACACAAATTTTGAATAAACAAAAAAGAACATATTC
* ** * * * *
58931819 AAAGCATACGAACGAAAAATATTCCAAGCAAGCAAAGAAAAAGTGAGTAATGTGCAAAGCTCCTC
711 AAAGCATACAAACGAAAAATATAGCAACCAAGCAAAGAAAAAGTGAGAAACGTGCAAAGGTCCTC
* **
58931884 TTCATTTTTATTTTCTTTGTGTTTTTTTTTTCAAAACCGTTTATACATACAAATATTTCTTTTTT
776 TTCATTTTTATTTTCTTTGTTTTTTTTTTTTTGAAACCGTTTATACATACAAATATTTCTTTTTT
58931949 AATACTGTGTATACATAT
841 AATACTGTGTATAC-TAT
* * *
58931967 ATATATGTATTTCAAAGGTGT-GGAAAAAGAGAAACTTACCCCTTTCTATTTGATTTCACCGAAA
1 ATATATGTATTTCAAAGGTGTATG-AAAAGAGAAACTTACCCCTTTCTCTTTGATTTCACCAAAA
* * * * * * *
58932031 GAAAGGAACTTTTGGCCTTTCAGTCGCCGTCGACGATAGTGCCATCGCTGGATAGCGGTGGCCGA
65 AAAAGGAACTTTTGGCCTTTCGGTCGCCGTCGACGACAGCGTCATCGCCGGATACCGGTGGCCGA
* * * *
58932096 TGCGGCATCAGTTCGCTGGATTCTGGAAAAGGGGAAAGAGTTTTGGGGGGAAAATTTTGGTTTTT
130 CGCGGCATCAGTTCGCCGGATTCTGGAAAAGGGGAAAGAGTTTTGGAGAGAAAATTTTGGTTTTT
* * *
58932161 CTTGGAGAAGTGAAGAAATGAGGCTAATTTT-AAAAAAATTGACTTAAATAGGCCCTATGAAACG
195 TTTGGAGAAGTGCAGAAATGAGGCT-ATTTTAAAAAAAATTGACTTAAATAGGCCCTACGAAACG
* * *
58932225 GCATCGTTTTAT-GCCACTGCTCTAGACGACAAAATGGCGTCGTTTAGCACCTTGACCCATGCGC
259 GCGTCGTTTT-TGGCCACTGCTCCAGACGACAAAACGGCGTCGTTTAGC-CCTTGACCCATGCGC
*
58932289 GCGACCCAACTTGCCAAGGGATCCGCGTGTTTTCAACTTTTGGGTTATTTATGTAGCATGTCC-T
322 GCGACCCAACCTGCCAAGGGATCCGCGTGTTTTCAACTTTTGGGTTATTTATGTAGCATGTCCTT
* * * *
58932353 TCTGATTTTTCCACATATTTTAATTATATCCTTTTT-TAT-TTTTTGTTTCTTTTATTTTGGCTT
387 TC-GATTTTTCCACATATTTTAATTAGATCCTTTTTGTTTATTTTTGTTTCTTTTATTTCGGCCT
* *
58932416 G-TCAATTTTGTTTTCAGCAAAATAAAAACCCTAGCCCCACCACTAGCCGCAGCACCTCTTCGCA
451 GAT-AATTTTGTTTTCAGCAAAATAAAAACCCTAGCCCCACCACTAGCCGCACCACCTCTTCGCG
* * * * * *
58932480 CCATACCCTTCACGTGCCGTCTGAGACTTTTCTACCATCGTTACCTGCAAGGAAGAATAGACATG
515 CCATACCCTCCACGTGCCGTCTGACACCTTTCTGCCATCGTTACCTGCAAGGAAGAACAGACACG
* *
58932545 CAAAGCAACAACAGAGAAACAATAGCAAAGAGAAATAATAAACAATGCAATATTGGCAGGCCATG
580 CAAAGCAGCAACAGAGAAACAATAGCAAAGAGAAATAATAAACAATGTAATATTGGCAGGCCATG
*
58932610 GATTGTAACGTTTTCAAAAAAAGGGAGAAATACACAAATTTTGAATAAACAAAAAAGACCATATT
645 GATTGTAACGTTTTCAAAAAAAGGGAGAAATACACAAATTTTGAATAAACAAAAAAGAACATATT
* * * *
58932675 CAAAGCATTCAAACGGAAAATATAGCAACCAAACAAAGAAAAAGTGAGAAACGTGCAAAGGTCAT
710 CAAAGCATACAAACGAAAAATATAGCAACCAAGCAAAGAAAAAGTGAGAAACGTGCAAAGGTCCT
* * *** * * * *
58932740 CGTC-----GA-CGGCCTT-TCTTTTTTTTTTTGAAATCATTTATACATACAAATATTTCTTTTT
775 CTTCATTTTTATTTTCTTTGTTTTTTTTTTTTTGAAACCGTTTATACATACAAATATTTCTTTTT
*
58932798 TAATATTGTGTATAC-AT
840 TAATACTGTGTATACTAT
58932815 ATATATGTATTTCAAAGGTGTATGAAAAGAGAAACTTACCCCTTTCTCTTTGATTTCACCAAAAA
1 ATATATGTATTTCAAAGGTGTATGAAAAGAGAAACTTACCCCTTTCTCTTTGATTTCACC--AAA
* * * * *
58932880 AAAAAGGAA-TTTTGGCCTTTCGGTCGTCGTCGACGGCAACGTCATCACCGGATACCAGTGGCCG
64 AAAAAGGAACTTTTGGCCTTTCGGTCGCCGTCGACGACAGCGTCATCGCCGGATACCGGTGGCCG
* * * *
58932944 ACGCTGCAGTGA-TTCGCCGGATTCTAGAAAAGGGGAAAGAGTTTTGGAGAGAAAATTTTAGTTT
129 ACGCGGCA-TCAGTTCGCCGGATTCTGGAAAAGGGGAAAGAGTTTTGGAGAGAAAATTTT-GGTT
* *
58933008 TTTTTTGGAGAAGTGCAGAAATAAGGCTATTTTAAAAAAAAAATTTGACTTAAATACGCCCTACG
192 TTTTTTGGAGAAGTGCAGAAATGAGGCTATTTT--AAAAAAAA-TTGACTTAAATAGGCCCTACG
* * *
58933073 AAATGGCGTCGTTTTTGGCCAGTGCTCCAGACGACAAAACGGCGTCGTTTAGCCCCTTGACCCAC
254 AAACGGCGTCGTTTTTGGCCACTGCTCCAGACGACAAAACGGCGTCGTTTAG-CCCTTGACCCAT
* * * *
58933138 GCGCGCGATCGAACCTGCCAGGGGATCCGCGTGTTTTCAAC--TTGGGTTATTTATGGAGCATGT
318 GCGCGCGACCCAACCTGCCAAGGGATCCGCGTGTTTTCAACTTTTGGGTTATTTATGTAGCATGT
** *
58933201 TATTTCGATTTTTCCACATATTTTAATTAGATCCTTTTTATTTATTTTTGTTTCTTTTATTTCGG
383 CCTTTCGATTTTTCCACATATTTTAATTAGATCCTTTTTGTTTATTTTTGTTTCTTTTATTTCGG
* * * *
58933266 TCTGATAATTTTGTTTTCAACAAAATAAAAACCCTATCCCTACCACTAGCCGCACCACCTCTTCG
448 CCTGATAATTTTGTTTTCAGCAAAATAAAAACCCTAGCCCCACCACTAGCCGCACCACCTCTTCG
* * * * *
58933331 CGCCGTACCCTCCACGTGCCGTCTGACACCTTTCTGCCGTCGTTACCTACAAGGAATAATAGACA
513 CGCCATACCCTCCACGTGCCGTCTGACACCTTTCTGCCATCGTTACCTGCAAGGAAGAACAGACA
*
58933396 CGCAAAGCAGCAACAGAGAAACAATAGCAAAGAGAAATAATAAACAATGTAATATTGGTAGGCCA
578 CGCAAAGCAGCAACAGAGAAACAATAGCAAAGAGAAATAATAAACAATGTAATATTGGCAGGCCA
* * * *
58933461 TGGATTGTAATGTTTTCAAAAAAATGGAGAAATACACAAATTTTGAATAAACAAAATAGAATATA
643 TGGATTGTAACGTTTTCAAAAAAAGGGAGAAATACACAAATTTTGAATAAACAAAAAAGAACATA
** *
58933526 TTCAAAGCATACAAACGAAAAATGCAACAACCAAGCAAAGAAAAAGTGAGAAACGTGCAAAGGTC
708 TTCAAAGCATACAAACGAAAAATATAGCAACCAAGCAAAGAAAAAGTGAGAAACGTGCAAAGGTC
*
58933591 CTCTTCATTTTTATTTTCTTTGTTTTTTACTTTTTTTTTGAAACCGTTTATGCATACAAATATTT
773 CTCTTCATTTTTATTTTCTTTG--TTTT--TTTTTTTTTGAAACCGTTTATACATACAAATATTT
* *
58933656 CTTTTGTAGTACTGTGTAT
834 CTTTTTTAATACTGTGTAT
58933675 GTAGCGACCT
Statistics
Matches: 2218, Mismatches: 300, Indels: 90
0.85 0.12 0.03
Matches are distributed among these distances:
848 58 0.03
849 99 0.04
850 94 0.04
851 56 0.03
852 14 0.01
853 428 0.19
854 2 0.00
855 52 0.02
856 132 0.06
857 300 0.14
858 242 0.11
859 171 0.08
860 191 0.09
861 128 0.06
862 199 0.09
863 4 0.00
864 48 0.02
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (857 bp):
ATATATGTATTTCAAAGGTGTATGAAAAGAGAAACTTACCCCTTTCTCTTTGATTTCACCAAAAA
AAAGGAACTTTTGGCCTTTCGGTCGCCGTCGACGACAGCGTCATCGCCGGATACCGGTGGCCGAC
GCGGCATCAGTTCGCCGGATTCTGGAAAAGGGGAAAGAGTTTTGGAGAGAAAATTTTGGTTTTTT
TTGGAGAAGTGCAGAAATGAGGCTATTTTAAAAAAAATTGACTTAAATAGGCCCTACGAAACGGC
GTCGTTTTTGGCCACTGCTCCAGACGACAAAACGGCGTCGTTTAGCCCTTGACCCATGCGCGCGA
CCCAACCTGCCAAGGGATCCGCGTGTTTTCAACTTTTGGGTTATTTATGTAGCATGTCCTTTCGA
TTTTTCCACATATTTTAATTAGATCCTTTTTGTTTATTTTTGTTTCTTTTATTTCGGCCTGATAA
TTTTGTTTTCAGCAAAATAAAAACCCTAGCCCCACCACTAGCCGCACCACCTCTTCGCGCCATAC
CCTCCACGTGCCGTCTGACACCTTTCTGCCATCGTTACCTGCAAGGAAGAACAGACACGCAAAGC
AGCAACAGAGAAACAATAGCAAAGAGAAATAATAAACAATGTAATATTGGCAGGCCATGGATTGT
AACGTTTTCAAAAAAAGGGAGAAATACACAAATTTTGAATAAACAAAAAAGAACATATTCAAAGC
ATACAAACGAAAAATATAGCAACCAAGCAAAGAAAAAGTGAGAAACGTGCAAAGGTCCTCTTCAT
TTTTATTTTCTTTGTTTTTTTTTTTTTGAAACCGTTTATACATACAAATATTTCTTTTTTAATAC
TGTGTATACTAT
Found at i:58933431 original size:16 final size:17
Alignment explanation
Indices: 58933404--58933437 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
58933394 CACGCAAAGC
58933404 AGCAACAGAGAAACAAT
1 AGCAACAGAGAAACAAT
*
58933421 AGCAA-AGAGAAATAAT
1 AGCAACAGAGAAACAAT
58933437 A
1 A
58933438 AACAATGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.62, C:0.12, G:0.18, T:0.09
Consensus pattern (17 bp):
AGCAACAGAGAAACAAT
Found at i:58934085 original size:20 final size:20
Alignment explanation
Indices: 58934060--58934138 Score: 60
Period size: 20 Copynumber: 4.2 Consensus size: 20
58934050 CAACTTTTTC
58934060 TTTTCTGAAAACACGAAAAT
1 TTTTCTGAAAACACGAAAAT
* * *
58934080 TTTTCTTAAAATA--AAAGAA
1 TTTTCTGAAAACACGAAA-AT
*
58934099 TTTT-AG-AAACACG-AAAT
1 TTTTCTGAAAACACGAAAAT
* *
58934116 TTTTTTAAAAACACGAAAAT
1 TTTTCTGAAAACACGAAAAT
58934136 TTT
1 TTT
58934139 GAAACACGAG
Statistics
Matches: 44, Mismatches: 9, Indels: 12
0.68 0.14 0.18
Matches are distributed among these distances:
17 9 0.20
18 5 0.11
19 12 0.27
20 18 0.41
ACGTcount: A:0.47, C:0.10, G:0.08, T:0.35
Consensus pattern (20 bp):
TTTTCTGAAAACACGAAAAT
Found at i:58934121 original size:19 final size:19
Alignment explanation
Indices: 58934099--58934220 Score: 83
Period size: 19 Copynumber: 6.5 Consensus size: 19
58934089 AATAAAAGAA
58934099 TTTTAGAAACACGAAATTT
1 TTTTAGAAACACGAAATTT
* *
58934118 TTTTAAAAACACGAAA--A
1 TTTTAGAAACACGAAATTT
*
58934135 TTTT-GAAACACGAGATTTT
1 TTTTAGAAACACGA-AATTT
* * *
58934154 TTTTTGAAAACAAGAAGTTT
1 TTTTAG-AAACACGAAATTT
* *
58934174 CTTTTTGAAACACGAAA-AT
1 -TTTTAGAAACACGAAATTT
*
58934193 TTTTA-AAACACAAAATTT
1 TTTTAGAAACACGAAATTT
*
58934211 GTTTTTGAAA
1 -TTTTAGAAA
58934221 ACATAAAAAT
Statistics
Matches: 80, Mismatches: 14, Indels: 17
0.72 0.13 0.15
Matches are distributed among these distances:
16 8 0.10
17 14 0.17
18 5 0.06
19 24 0.30
20 16 0.20
21 13 0.16
ACGTcount: A:0.43, C:0.10, G:0.11, T:0.37
Consensus pattern (19 bp):
TTTTAGAAACACGAAATTT
Found at i:58934143 original size:35 final size:35
Alignment explanation
Indices: 58934068--58934156 Score: 103
Period size: 35 Copynumber: 2.5 Consensus size: 35
58934058 TCTTTTCTGA
58934068 AAACACGAAAATTTTTCTTAAAATAAAAGAATTTTAG
1 AAACACG-AAATTTTT-TTAAAATAAAAGAATTTTAG
58934105 AAACACGAAATTTTTTTAAAA-ACACGAA-AATTTT-G
1 AAACACGAAATTTTTTTAAAATA-A--AAGAATTTTAG
*
58934140 AAACACGAGATTTTTTT
1 AAACACGAAATTTTTTT
58934157 TTGAAAACAA
Statistics
Matches: 48, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
34 1 0.02
35 24 0.50
36 14 0.29
37 9 0.19
ACGTcount: A:0.47, C:0.10, G:0.09, T:0.34
Consensus pattern (35 bp):
AAACACGAAATTTTTTTAAAATAAAAGAATTTTAG
Found at i:58934160 original size:20 final size:22
Alignment explanation
Indices: 58934135--58934188 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 22
58934125 AACACGAAAA
*
58934135 TTTTGAAACACGAG-A-TTTTT
1 TTTTGAAACACGAGAAGTTTCT
*
58934155 TTTTGAAA-ACAAGAAGTTTCT
1 TTTTGAAACACGAGAAGTTTCT
58934176 TTTTGAAACACGA
1 TTTTGAAACACGA
58934189 AAATTTTTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 4 0.14
20 9 0.32
21 12 0.43
22 3 0.11
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.39
Consensus pattern (22 bp):
TTTTGAAACACGAGAAGTTTCT
Found at i:58934207 original size:16 final size:17
Alignment explanation
Indices: 58934175--58934210 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
58934165 AAGAAGTTTC
*
58934175 TTTTTGAAACACGAAAA
1 TTTTTAAAACACGAAAA
58934192 TTTTTAAAACAC-AAAA
1 TTTTTAAAACACGAAAA
58934208 TTT
1 TTT
58934211 GTTTTTGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.47, C:0.11, G:0.06, T:0.36
Consensus pattern (17 bp):
TTTTTAAAACACGAAAA
Found at i:58934221 original size:21 final size:21
Alignment explanation
Indices: 58934135--58934233 Score: 61
Period size: 21 Copynumber: 5.0 Consensus size: 21
58934125 AACACGAAAA
* * *
58934135 TTTTG-AAACACGAGATTTTT
1 TTTTGAAAACACAAAATTTGT
* *
58934155 TTTTGAAAACA-AGAAGTTTCT
1 TTTTGAAAACACA-AAATTTGT
58934176 TTTTG-AAACACGAAAA----T
1 TTTTGAAAACAC-AAAATTTGT
58934193 TTTT-AAAACACAAAATTTGT
1 TTTTGAAAACACAAAATTTGT
*
58934213 TTTTGAAAACATAAAAATTTG
1 TTTTGAAAACA-CAAAATTTG
58934234 GATAAAATAC
Statistics
Matches: 62, Mismatches: 6, Indels: 20
0.70 0.07 0.23
Matches are distributed among these distances:
16 4 0.06
17 11 0.18
20 15 0.24
21 23 0.37
22 9 0.15
ACGTcount: A:0.41, C:0.09, G:0.11, T:0.38
Consensus pattern (21 bp):
TTTTGAAAACACAAAATTTGT
Found at i:58934232 original size:22 final size:20
Alignment explanation
Indices: 58934192--58934233 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
58934182 AACACGAAAA
*
58934192 TTTTTAAAACACAAAATTTG
1 TTTTTAAAACAAAAAATTTG
58934212 TTTTTGAAAACATAAAAATTTG
1 TTTTT-AAAACA-AAAAATTTG
58934234 GATAAAATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 5 0.26
21 6 0.32
22 8 0.42
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.40
Consensus pattern (20 bp):
TTTTTAAAACAAAAAATTTG
Found at i:58934285 original size:17 final size:17
Alignment explanation
Indices: 58934259--58934372 Score: 75
Period size: 17 Copynumber: 6.3 Consensus size: 17
58934249 ACGAGGATTT
58934259 TTTTTGAAACACGAAAA
1 TTTTTGAAACACGAAAA
* * **
58934276 TTTATGAAACATGGCCAA
1 TTTTTGAAACA-CGAAAA
*
58934294 TTCTTTGAAAACATGAAAA
1 TT-TTTG-AAACACGAAAA
* *
58934313 TTTTTGAAAGACGAGAATTT
1 TTTTTGAAACACGA-AA--A
*
58934333 TTTTTGAAAACACGGAAA
1 TTTTTG-AAACACGAAAA
* *
58934351 TTTATGAAACACGGAAA
1 TTTTTGAAACACGAAAA
58934368 TTTTT
1 TTTTT
58934373 TTTTTGAAAA
Statistics
Matches: 74, Mismatches: 16, Indels: 14
0.71 0.15 0.13
Matches are distributed among these distances:
17 31 0.42
18 16 0.22
19 8 0.11
20 13 0.18
21 6 0.08
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (17 bp):
TTTTTGAAACACGAAAA
Found at i:58934352 original size:38 final size:38
Alignment explanation
Indices: 58934244--58934412 Score: 143
Period size: 38 Copynumber: 4.4 Consensus size: 38
58934234 GATAAAATAC
* * *
58934244 GAAACACGAGGATTTTTTTTG-AAACACGAAAATTTAT
1 GAAACACGAGAATTTTTTTTGAAAACAAGAAAATTTTT
* * *
58934281 GAAACATG-GCCAA--TTCTTTGAAAACATGAAAATTTTT
1 GAAACACGAG--AATTTTTTTTGAAAACAAGAAAATTTTT
* * * *
58934318 GAAAGACGAGAATTTTTTTTGAAAACACGGAAATTTAT
1 GAAACACGAGAATTTTTTTTGAAAACAAGAAAATTTTT
58934356 GAAACACG-GAAATTTTTTTTTTGAAAACAAGAAAATTTTT
1 GAAACACGAG-AA--TTTTTTTTGAAAACAAGAAAATTTTT
*
58934396 GAAATAC-AGGAATTTTT
1 GAAACACGA-GAATTTTT
58934413 AAAAACACGA
Statistics
Matches: 105, Mismatches: 16, Indels: 21
0.74 0.11 0.15
Matches are distributed among these distances:
36 9 0.09
37 28 0.27
38 36 0.34
40 31 0.30
41 1 0.01
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.34
Consensus pattern (38 bp):
GAAACACGAGAATTTTTTTTGAAAACAAGAAAATTTTT
Found at i:58934412 original size:18 final size:18
Alignment explanation
Indices: 58934292--58934478 Score: 53
Period size: 20 Copynumber: 9.8 Consensus size: 18
58934282 AAACATGGCC
* *
58934292 AATTCTTTGAAAACATGA
1 AATTTTTTGAAAACAAGA
* *
58934310 AAATTTTTGAAAGACGAGA
1 AATTTTTTGAAA-ACAAGA
* *
58934329 ATTTTTTTTGAAAACACGGA
1 A-ATTTTTTGAAAACA-AGA
* *
58934349 AA-TTTATG-AAACACGGA
1 AATTTTTTGAAAACA-AGA
58934366 AATTTTTTTTTTGAAAACAAGA
1 AA----TTTTTTGAAAACAAGA
* *
58934388 AAATTTTTGAAATAC-AGG
1 AATTTTTTGAAA-ACAAGA
* *
58934406 AA-TTTTTAAAAACACGA
1 AATTTTTTGAAAACAAGA
* *
58934423 GATTGTTTTTTAAAA-AACCCGGA
1 -AAT-TTTTTGAAAACAA----GA
58934446 AA-TTTTTGAAATACAAGA
1 AATTTTTTGAAA-ACAAGA
58934464 AATTTTTCTGAAAAC
1 AATTTTT-TGAAAAC
58934479 GCAAAAATTT
Statistics
Matches: 125, Mismatches: 22, Indels: 43
0.66 0.12 0.23
Matches are distributed among these distances:
16 2 0.02
17 20 0.16
18 33 0.26
19 16 0.13
20 34 0.27
21 1 0.01
22 12 0.10
23 7 0.06
ACGTcount: A:0.43, C:0.09, G:0.13, T:0.34
Consensus pattern (18 bp):
AATTTTTTGAAAACAAGA
Found at i:58935433 original size:7 final size:7
Alignment explanation
Indices: 58935423--58935502 Score: 63
Period size: 7 Copynumber: 11.0 Consensus size: 7
58935413 TTATTTTTCC
58935423 TTTTCTT
1 TTTTCTT
*
58935430 TTTTTTT
1 TTTTCTT
58935437 CTCTTTCTCT
1 -T-TTTCT-T
*
58935447 TTTT-TA
1 TTTTCTT
58935453 TTTTCTT
1 TTTTCTT
58935460 TTTTCTT
1 TTTTCTT
*
58935467 TCTTCTT
1 TTTTCTT
*
58935474 CTTTCTT
1 TTTTCTT
*
58935481 CTTTCTT
1 TTTTCTT
58935488 TCTTTCTT
1 T-TTTCTT
*
58935496 TCTTCTT
1 TTTTCTT
58935503 CCCTTTTTCT
Statistics
Matches: 59, Mismatches: 9, Indels: 10
0.76 0.12 0.13
Matches are distributed among these distances:
6 4 0.07
7 38 0.64
8 11 0.19
9 5 0.08
10 1 0.02
ACGTcount: A:0.01, C:0.21, G:0.00, T:0.78
Consensus pattern (7 bp):
TTTTCTT
Found at i:58935451 original size:25 final size:24
Alignment explanation
Indices: 58935423--58935494 Score: 81
Period size: 25 Copynumber: 2.9 Consensus size: 24
58935413 TTATTTTTCC
58935423 TTTTCTTTTTTTTTCTCTTTCTCTT
1 TTTTCTTTTTTTTT-TCTTTCTCTT
*
58935448 TTTTATTTTCTTTTTTCTTTCTTCTT
1 TTTTCTTTT-TTTTTTCTTTC-TCTT
* * *
58935474 CTTTCTTCTTTCTTTCTTTCT
1 TTTTCTTTTTTTTTTCTTTCT
58935495 TTCTTCTTCC
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
24 1 0.03
25 24 0.60
26 15 0.38
ACGTcount: A:0.01, C:0.21, G:0.00, T:0.78
Consensus pattern (24 bp):
TTTTCTTTTTTTTTTCTTTCTCTT
Found at i:58935470 original size:29 final size:29
Alignment explanation
Indices: 58935423--58935503 Score: 87
Period size: 29 Copynumber: 2.8 Consensus size: 29
58935413 TTATTTTTCC
* *
58935423 TTTTCTTTTTTTTTCTCTTTC-TCTTTTTT
1 TTTTCTTTTTTCTT-TCTTTCTTCTTTCTT
58935452 ATTTTCTTTTTTCTTTC-TTCTTCTTTCTT
1 -TTTTCTTTTTTCTTTCTTTCTTCTTTCTT
*
58935481 CTTTCTTTCTTTCTTTC-TTCTTC
1 TTTTCTTT-TTTCTTTCTTTCTTC
58935504 CCTTTTTCTT
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
28 10 0.22
29 23 0.50
30 13 0.28
ACGTcount: A:0.01, C:0.22, G:0.00, T:0.77
Consensus pattern (29 bp):
TTTTCTTTTTTCTTTCTTTCTTCTTTCTT
Found at i:58935478 original size:21 final size:19
Alignment explanation
Indices: 58935425--58935502 Score: 76
Period size: 19 Copynumber: 4.3 Consensus size: 19
58935415 ATTTTTCCTT
*
58935425 TTCTTT-TTTTTTCTCTTTC
1 TTCTTTCTTTCTT-TCTTTC
* *
58935444 -TCTTT-TTTATTTTCTTTT
1 TTCTTTCTTT-CTTTCTTTC
58935462 TTCTTTC-TTC-TTCTTTC
1 TTCTTTCTTTCTTTCTTTC
58935479 TTCTTTCTTTCTTTCTTTC
1 TTCTTTCTTTCTTTCTTTC
58935498 TTCTT
1 TTCTT
58935503 CCCTTTTTCT
Statistics
Matches: 51, Mismatches: 3, Indels: 10
0.80 0.05 0.16
Matches are distributed among these distances:
17 13 0.25
18 16 0.31
19 22 0.43
ACGTcount: A:0.01, C:0.22, G:0.00, T:0.77
Consensus pattern (19 bp):
TTCTTTCTTTCTTTCTTTC
Found at i:58935484 original size:42 final size:41
Alignment explanation
Indices: 58935405--58935521 Score: 105
Period size: 41 Copynumber: 2.9 Consensus size: 41
58935395 TGTTAATTAA
* *
58935405 TTTTTTATTTATTTTTCCTTTTCTTTTTTTTTCTCTTTCTC
1 TTTTTTATTTATTTTTCCTTTTCTTCTTCTTTCTCTTTCTC
* *
58935446 TTTTTTATTTTCTTTTTTC-TTTCTTCTTCTTTCTTCTTTCT-
1 TTTTTTA-TTTATTTTTCCTTTTCTTCTTCTTTC-TCTTTCTC
* * * * * *
58935487 TTCTTTCTTTCTTCTTCCCTTT-TTCTTCCTTCTCT
1 TTTTTTATTTATTTTTCCTTTTCTTCTTCTTTCTCT
58935522 GTTCAGCAGT
Statistics
Matches: 64, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
39 3 0.05
40 18 0.28
41 27 0.42
42 16 0.25
ACGTcount: A:0.03, C:0.23, G:0.00, T:0.74
Consensus pattern (41 bp):
TTTTTTATTTATTTTTCCTTTTCTTCTTCTTTCTCTTTCTC
Found at i:58935503 original size:3 final size:4
Alignment explanation
Indices: 58935454--58935499 Score: 64
Period size: 4 Copynumber: 12.5 Consensus size: 4
58935444 TCTTTTTTAT
58935454 TTTC TTT- TTTC TTTC -TTC -TTC TTTC -TTC TTTC TTTC TTTC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
58935498 TT
1 TT
58935500 CTTCCCTTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
3 12 0.31
4 27 0.69
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:58935519 original size:29 final size:29
Alignment explanation
Indices: 58935461--58935519 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 29
58935451 TATTTTCTTT
*
58935461 TTTCTTTCTTCTTCTTTCTTCTTTCTTTC
1 TTTCTTTCTTCTTCTTTCTTCTTTCCTTC
58935490 TTTCTTTCTTCTTCCCTTT-TTC-TTCCTTC
1 TTTCTTTCTTCTT--CTTTCTTCTTTCCTTC
58935519 T
1 T
58935520 CTGTTCAGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
29 20 0.74
30 3 0.11
31 4 0.15
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (29 bp):
TTTCTTTCTTCTTCTTTCTTCTTTCCTTC
Found at i:58935626 original size:12 final size:12
Alignment explanation
Indices: 58935609--58935680 Score: 51
Period size: 12 Copynumber: 6.1 Consensus size: 12
58935599 CTCTCCTCTC
58935609 TTTTCTTCTTTT
1 TTTTCTTCTTTT
*
58935621 TTTTCTTCTTTAC
1 TTTTCTTCTTT-T
*
58935634 TCTT-TTC-TTT
1 TTTTCTTCTTTT
*
58935644 TTTTCCTCTTTT
1 TTTTCTTCTTTT
* * *
58935656 GCTTGCTTGTTTT
1 -TTTTCTTCTTTT
58935669 TTTTCTT-TTTT
1 TTTTCTTCTTTT
58935680 T
1 T
58935681 GCCTCTTGGT
Statistics
Matches: 45, Mismatches: 11, Indels: 9
0.69 0.17 0.14
Matches are distributed among these distances:
10 3 0.07
11 9 0.20
12 22 0.49
13 11 0.24
ACGTcount: A:0.01, C:0.18, G:0.04, T:0.76
Consensus pattern (12 bp):
TTTTCTTCTTTT
Found at i:58935688 original size:24 final size:25
Alignment explanation
Indices: 58935641--58935688 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
58935631 TACTCTTTTC
*
58935641 TTTTTTTCCTCTTTTGCTTGCTTGT
1 TTTTTTTCCTCTTTTGCCTGCTTGT
* *
58935666 TTTTTTTCTTTTTTTGCCT-CTTG
1 TTTTTTTCCTCTTTTGCCTGCTTG
58935689 GTTGTTTTGC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.00, C:0.19, G:0.10, T:0.71
Consensus pattern (25 bp):
TTTTTTTCCTCTTTTGCCTGCTTGT
Found at i:58936038 original size:30 final size:30
Alignment explanation
Indices: 58936003--58936148 Score: 136
Period size: 30 Copynumber: 4.9 Consensus size: 30
58935993 AAACGTAGTA
**
58936003 AAAGTTTTAGGGCCAAAACATAATTTTGAG
1 AAAGTTTTAGGGCCAAAATGTAATTTTGAG
* * *
58936033 AAAG-TTCAGGGGTCAAAATGTAATTTAGA-
1 AAAGTTTTA-GGGCCAAAATGTAATTTTGAG
* *
58936062 AAAGTTTAAGGGTCAAAATGTAATTTTGAG
1 AAAGTTTTAGGGCCAAAATGTAATTTTGAG
* *
58936092 AAAGTTTATAGGTCAAAAATGTAATTTT-AG
1 AAAGTTT-TAGGGCCAAAATGTAATTTTGAG
* * *
58936122 AAAATTTTAGGGGTCAAAATGCAATTT
1 AAAGTTTTA-GGGCCAAAATGTAATTT
58936149 ATTTTAAACA
Statistics
Matches: 95, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
29 28 0.29
30 51 0.54
31 16 0.17
ACGTcount: A:0.41, C:0.06, G:0.21, T:0.32
Consensus pattern (30 bp):
AAAGTTTTAGGGCCAAAATGTAATTTTGAG
Found at i:58936066 original size:29 final size:30
Alignment explanation
Indices: 58936023--58936149 Score: 150
Period size: 29 Copynumber: 4.2 Consensus size: 30
58936013 GGCCAAAACA
* *
58936023 TAATTTTGAGAAAGTTCAGGGGTCAAAATG
1 TAATTTAGAGAAAGTTTAGGGGTCAAAATG
*
58936053 TAATTTAGA-AAAGTTTAAGGGTCAAAATG
1 TAATTTAGAGAAAGTTTAGGGGTCAAAATG
* **
58936082 TAATTTTGAGAAAGTTTATAGGTCAAAAATG
1 TAATTTAGAGAAAGTTTAGGGGTC-AAAATG
*
58936113 TAATTTTAGA-AAATTTTAGGGGTCAAAATG
1 TAA-TTTAGAGAAAGTTTAGGGGTCAAAATG
*
58936143 CAATTTA
1 TAATTTA
58936150 TTTTAAACAC
Statistics
Matches: 83, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
29 30 0.36
30 28 0.34
31 20 0.24
32 5 0.06
ACGTcount: A:0.41, C:0.05, G:0.20, T:0.34
Consensus pattern (30 bp):
TAATTTAGAGAAAGTTTAGGGGTCAAAATG
Found at i:58936079 original size:59 final size:61
Alignment explanation
Indices: 58936002--58936140 Score: 183
Period size: 59 Copynumber: 2.3 Consensus size: 61
58935992 TAAACGTAGT
* * *
58936002 AAAAGTTTTAGGGCCAAAACATAATTTTGAGAAAGTTCAGGGGTC-AAAATGTAA-TTTAG
1 AAAAGTTTAAGGGTCAAAACATAATTTTGAGAAAGTTCAGAGGTCAAAAATGTAATTTTAG
** * *
58936061 AAAAGTTTAAGGGTCAAAATGTAATTTTGAGAAAGTTTATAGGTCAAAAATGTAATTTTAG
1 AAAAGTTTAAGGGTCAAAACATAATTTTGAGAAAGTTCAGAGGTCAAAAATGTAATTTTAG
* *
58936122 AAAATTTTAGGGGTCAAAA
1 AAAAGTTTAAGGGTCAAAA
58936141 TGCAATTTAT
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
59 38 0.55
60 9 0.13
61 22 0.32
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.31
Consensus pattern (61 bp):
AAAAGTTTAAGGGTCAAAACATAATTTTGAGAAAGTTCAGAGGTCAAAAATGTAATTTTAG
Found at i:58936137 original size:31 final size:30
Alignment explanation
Indices: 58936023--58936148 Score: 150
Period size: 30 Copynumber: 4.2 Consensus size: 30
58936013 GGCCAAAACA
*
58936023 TAATTTT-GAGAAAGTTCAGGGGTCAAAATG
1 TAATTTTAGA-AAAGTTTAGGGGTCAAAATG
*
58936053 TAA-TTTAGAAAAGTTTAAGGGTCAAAATG
1 TAATTTTAGAAAAGTTTAGGGGTCAAAATG
**
58936082 TAATTTT-GAGAAAGTTTATAGGTCAAAAATG
1 TAATTTTAGA-AAAGTTTAGGGGTC-AAAATG
*
58936113 TAATTTTAGAAAATTTTAGGGGTCAAAATG
1 TAATTTTAGAAAAGTTTAGGGGTCAAAATG
*
58936143 CAATTT
1 TAATTT
58936149 ATTTTAAACA
Statistics
Matches: 83, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
29 26 0.31
30 31 0.37
31 24 0.29
32 2 0.02
ACGTcount: A:0.40, C:0.05, G:0.21, T:0.34
Consensus pattern (30 bp):
TAATTTTAGAAAAGTTTAGGGGTCAAAATG
Found at i:58936822 original size:92 final size:88
Alignment explanation
Indices: 58936666--58936835 Score: 277
Period size: 92 Copynumber: 1.9 Consensus size: 88
58936656 TATGAGTTGA
*
58936666 TTTTTGAAAAACAGAAATTAAAAATACCTCGGCGTGTGCCCGGGGCTCAACTCACCTCTAGCAAT
1 TTTTTGAAAAACAGAAATTAAAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTAGCAAT
*
58936731 ATGAGTTGATTTTGATTTTTGTT
66 ATGAGTCGATTTTGATTTTTGTT
*
58936754 TTTTTGAAAAACAGAAATTTAAAAGAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCG
1 TTTTTGAAAAACAGAAA-TT--AA-AAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTAG
58936819 CAATATGAGTCGATTTT
62 CAATATGAGTCGATTTT
58936836 TGAAAAACAG
Statistics
Matches: 75, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
88 17 0.23
89 2 0.03
91 2 0.03
92 54 0.72
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (88 bp):
TTTTTGAAAAACAGAAATTAAAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTAGCAAT
ATGAGTCGATTTTGATTTTTGTT
Found at i:58936853 original size:92 final size:87
Alignment explanation
Indices: 58936669--58936856 Score: 207
Period size: 92 Copynumber: 2.1 Consensus size: 87
58936659 GAGTTGATTT
*
58936669 TTGAAAAACAGAAATTAAAAATACCTCGGCGTGTGCCCGGGGCTCAACTCACCTCTAGCAATATG
1 TTGAAAAACAGAAATTAAAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTAGCAATATG
* ***** ***
58936734 AGTTGATTTTGATTTTTGTTTTT
66 AGTCGATTTTGAAAACAG-TAAA
*
58936757 TTGAAAAACAGAAATTTAAAAGAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCAA
1 TTGAAAAACAGAAA-TT--AA-AAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTAGCAA
58936822 TATGAGTCGATTTTTGAAAAACAG-AAA
62 TATGAGTCGA-TTTTG-AAAACAGTAAA
58936849 TTGAAAAA
1 TTGAAAAA
58936857 TACCTCAGCG
Statistics
Matches: 83, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
88 14 0.17
89 2 0.02
91 2 0.02
92 58 0.70
93 5 0.06
94 2 0.02
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (87 bp):
TTGAAAAACAGAAATTAAAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTAGCAATATG
AGTCGATTTTGAAAACAGTAAA
Found at i:58936881 original size:166 final size:156
Alignment explanation
Indices: 58936329--58937572 Score: 1132
Period size: 157 Copynumber: 7.8 Consensus size: 156
58936319 GCGACTCAAA
* * *
58936329 GCTCAACTCACCTCTTG-AATTATGAGTTGATTTTTTGGAAAACAGAAATTGAAAAGAATACCTC
1 GCTCAACTCACCTCTCGCAA-TATGAGTTGA-TTTTTGAAAAACAGAAATT-AAAAAAATACCTC
* * * *
58936393 GACATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA-GTTGA--TTTTTAAAAAACAAAAA
63 GGC--GTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGGTTGATTTTTTTGAAAAACAGAAA
* * *
58936455 TTT---A-AAATACCTCAGCTTGCGACCCGAG
126 TTTAAAAGAAATACCTCGGCATGTG-CCCGAG
* * * *
58936483 GCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACGGAAATT--TAAAATACTTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAAAATACCTC-G-
* * * * * *
58936546 GTGTGACCCGAGGCTCAACACACTTCTAGCAATAT-AAGTTGA--TTTTTGACAAACAGAATTTT
64 GCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGGTTGATTTTTTTGAAAAACAGAAATTT
* ** *
58936608 CAGGGAAATACCTCAGCATGTGACCCGAG
129 AAAAGAAATACCTCGGCATGTG-CCCGAG
58936637 GCTCAACTCACC-CTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT--AAAAATACCTCGGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAAAATACCTCGGC
* *
58936699 GTGTGCCCGGGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGATTTTTGTTTTTTTGAAAA
66 GTG-ACCCGAGGCTCAACTCACCTCTAGCAATATGAG--G---TTGA------TTTTTTTGAAAA
*
58936764 ACAGAAATTTAAAAGAAATACCTCGGCGTGTGCCCGAG
119 ACAGAAATTTAAAAGAAATACCTCGGCATGTGCCCGAG
* * *
58936802 GCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAAAACAGAAATT-GAAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAAAATACCTCGGC
* * * *
58936866 GTGACTCGAGGCTCAACTCACCTCTCGCAATATGA-GTTGATTTTTTTAAAAAACAGAAA-TT-G
66 GTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGGTTGATTTTTTTGAAAAACAGAAATTTAA
* *
58936928 AA-AAATACCTCGGCGTGTGCCCGAT
131 AAGAAATACCTCGGCATGTGCCCGAG
*
58936953 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTGATTTTTGTTTTTGGAAAAATAGAAATTTAA
1 GCTCAACTCACCTCTCGCAATATGA---G---TTGA------TTTTT-GAAAAACAGAAA-TTAA
* *
58937018 AAGAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCGCAATATGA-GTTGATTTTTTTG
52 AA-AAATACCTCGGCGTG-ACCCGAGGCTCAACTCACCTCTAGCAATATGAGGTTGATTTTTTTG
* ***
58937082 AAAAACAAAAATTTAAAAGAAATACCTCGGCATGTGTTTGAG
115 AAAAACAGAAATTTAAAAGAAATACCTCGGCATGTGCCCGAG
* *
58937124 GCTCAACTCACCTCTCGCAATATGAGTTGATATTTGAAAAACAGAAATTAAAAAAATACGTCGGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAAAATACCTCGGC
* * * * *
58937189 GTGCGACCCGAGACTCAACTCACCTC-ACGTAATATG-CGCTGATTTTTTTGAAAAACAAAAATT
66 GT--GACCCGAGGCTCAACTCACCTCTA-GCAATATGAGGTTGATTTTTTTGAAAAACAGAAATT
*
58937252 TAAAAGAAATACCTCGGCATGTGTCCGAG
128 TAAAAGAAATACCTCGGCATGTGCCCGAG
*
58937281 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTAAAAAAAATACCTCGG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT-AAAAAAATACCTCGG
* * * * *
58937346 CGTGCGACCTGAGACTCAACTCACATC-ACGTAATATGA-GCTGA--TTTTTGAAAAACAGAAAT
65 CGT--GACCCGAGGCTCAACTCACCTCTA-GCAATATGAGGTTGATTTTTTTGAAAAACAGAAAT
* * **
58937407 TT---A-AAATACCTCAGCGTACGACCCGAG
127 TTAAAAGAAATACCTCGGCATGTG-CCCGAG
** ** * *
58937434 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAGTAAAAATTGAAAAGAATACCTC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATT-AAAAAAATACCTC
* * * *
58937499 GGCATGCGACCCGAGGCTCAACTCACCTCTTGCACTATGAGTTGATTGATTTTTTT-TAAAACAG
63 GGC--GTGACCCGAGGCTCAACTCACCTCTAGCAATATGAG--G-TTGATTTTTTTGAAAAACAG
*
58937563 AAATTGAAAA
123 AAATTTAAAA
58937573 ATATTTCTTG
Statistics
Matches: 928, Mismatches: 96, Indels: 123
0.81 0.08 0.11
Matches are distributed among these distances:
149 1 0.00
150 59 0.06
151 52 0.06
152 42 0.05
153 99 0.11
154 78 0.08
155 59 0.06
156 32 0.03
157 135 0.15
158 71 0.08
159 7 0.01
160 16 0.02
161 5 0.01
163 7 0.01
164 11 0.01
165 24 0.03
166 100 0.11
167 30 0.03
168 53 0.06
169 2 0.00
170 2 0.00
171 43 0.05
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (156 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAAAATACCTCGGC
GTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGGTTGATTTTTTTGAAAAACAGAAATTTAA
AAGAAATACCTCGGCATGTGCCCGAG
Found at i:58937059 original size:91 final size:86
Alignment explanation
Indices: 58936666--58937572 Score: 647
Period size: 80 Copynumber: 11.3 Consensus size: 86
58936656 TATGAGTTGA
* * *
58936666 TTTTTGAAAAACAGAAA-TT--AA-AAATACCTCGGCGTGTGCCCGGGGCTCAACTCACCTCTAG
1 TTTTTGAAAAACAAAAATTTAAAAGAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCG
58936727 CAATATGAGTTGATTTTGATTTTTGTT
66 CAATATGAGTTGATTTTGA------TT
*
58936754 TTTTTGAAAAACAGAAATTTAAAAGAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCG
1 TTTTTGAAAAACAAAAATTTAAAAGAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCG
*
58936819 CAATATGA---G---TCGA--
66 CAATATGAGTTGATTTTGATT
* * * * *
58936832 TTTTTGAAAAACAGAAA-TT-GAA-AAATACCTCAGCGTG-ACTCGAGGCTCAACTCACCTCTCG
1 TTTTTGAAAAACAAAAATTTAAAAGAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCG
58936893 CAATATGA---G---TTGATT
66 CAATATGAGTTGATTTTGATT
* * * *
58936908 TTTTTAAAAAACAGAAA-TT-GAA-AAATACCTCGGCGTGTGCCCGATGCTCAACTCACCTCTCG
1 TTTTTGAAAAACAAAAATTTAAAAGAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCG
58936970 CAATATGAGTTGATTTTGATTTTT
66 CAATATGAGTTGATTTTGA---TT
* *
58936994 GTTTTTGGAAAAATAGAAATTTAAAAGAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCT
1 -TTTTT-GAAAAACAAAAATTTAAAAGAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCT
58937059 CGCAATATGA---G---TTGATT
64 CGCAATATGAGTTGATTTTGATT
* ***
58937076 TTTTTGAAAAACAAAAATTTAAAAGAAATACCTCGGCATGTGTTTGAGGCTCAACTCACCTCTCG
1 TTTTTGAAAAACAAAAATTTAAAAGAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCG
58937141 CAATATGAGTTGA---T-A--
66 CAATATGAGTTGATTTTGATT
* * * * *
58937156 --TTTGAAAAACAGAAA-TTAAAA-AAATACGTCGGCGTGCGACCCGAGACTCAACTCACCTCAC
1 TTTTTGAAAAACAAAAATTTAAAAGAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTC
* * *
58937217 GTAATAT--G-CG---CTGATT
65 GCAATATGAGTTGATTTTGATT
* *
58937233 TTTTTGAAAAACAAAAATTTAAAAGAAATACCTCGGCATGTGTCCGAGGCTCAACTCACCTCTCG
1 TTTTTGAAAAACAAAAATTTAAAAGAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCG
58937298 CAATATGA---G---TTGA--
66 CAATATGAGTTGATTTTGATT
* * * * * * * *
58937311 TTTTTGAAAAATAGAAA-TTAAAAAAAATACCTCGGCGTGCGACCTGAGACTCAACTCACATCAC
1 TTTTTGAAAAACAAAAATTTAAAAGAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTC
* *
58937375 GTAATATGA---G---CTGA--
65 GCAATATGAGTTGATTTTGATT
* * **
58937389 TTTTTGAAAAACAGAAATTT---A-AAATACCTCAGCGTACGACCCGAGGCTCAACTCACCTCTC
1 TTTTTGAAAAACAAAAATTTAAAAGAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTC
58937450 GCAATATGAGTTGA--TT--TT
65 GCAATATGAGTTGATTTTGATT
** * * * *
58937468 TTTTT--AAAGTAAAAATTGAAAAG-AATACCTCGGCATGCGACCCGAGGCTCAACTCACCTCTT
1 TTTTTGAAAAACAAAAATTTAAAAGAAATACCTCGGCGTGTG-CCCGAGGCTCAACTCACCTCTC
*
58937530 GCACTATGAGTTGA--TTGATT
65 GCAATATGAGTTGATTTTGATT
* * *
58937550 TTTTT-TAAAACAGAAATTGAAAA
1 TTTTTGAAAAACAAAAATTTAAAA
58937573 ATATTTCTTG
Statistics
Matches: 692, Mismatches: 76, Indels: 107
0.79 0.09 0.12
Matches are distributed among these distances:
74 36 0.05
75 58 0.08
76 52 0.08
77 90 0.13
78 92 0.13
79 22 0.03
80 149 0.22
81 19 0.03
82 10 0.01
83 20 0.03
85 4 0.01
86 5 0.01
87 5 0.01
88 28 0.04
89 5 0.01
90 2 0.00
91 49 0.07
92 46 0.07
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.28
Consensus pattern (86 bp):
TTTTTGAAAAACAAAAATTTAAAAGAAATACCTCGGCGTGTGCCCGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTGATT
Found at i:58937128 original size:80 final size:81
Alignment explanation
Indices: 58936329--58937572 Score: 1183
Period size: 75 Copynumber: 15.7 Consensus size: 81
58936319 GCGACTCAAA
* * *
58936329 GCTCAACTCACCTCTTG-AATTATGAGTTGA-TTTTTTGGAAAACAGAAATTGAAAAG-AATACC
1 GCTCAACTCACCTCTCGCAA-TATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAGAAATACC
* *
58936391 TCGACATGTGACCCGAG
65 TCGGCGTGTGACCCGAG
* *
58936408 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTAAAAAACAAAAATTT---A-AAATACCT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAGAAATACCT
* * *
58936467 CAGCTTGCGACCCGAG
66 CGGCGTGTGACCCGAG
* * *
58936483 GCTCAACTCACCTCTCACAATATGAGTTGA--TTTTTGAAAAACGGAAATTT---A-AAATACTT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAGAAATACCT
*
58936542 CAGCGTGTGACCCGAG
66 CGGCGTGTGACCCGAG
* * * * * * * **
58936558 GCTCAACACACTTCTAGCAATATAAGTTGA--TTTTTGACAAACAGAATTTTCAGGGAAATACCT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAGAAATACCT
* *
58936621 CAGCATGTGACCCGAG
66 CGGCGTGTGACCCGAG
58936637 GCTCAACTCACC-CTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAA-TT--AA-AAATACCT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAGAAATACCT
*
58936695 CGGCGTGTG-CCCGGG
66 CGGCGTGTGACCCGAG
*
58936710 GCTCAACTCACCTCTAGCAATATGAGTTGATTTTGATTTTTGTTTTTTTGAAAAACAGAAATTTA
1 GCTCAACTCACCTCTCGCAATATGA---G---TTGA------TTTTTTTGAAAAACAGAAATTTA
58936775 AAAGAAATACCTCGGCGTGTG-CCCGAG
54 AAAGAAATACCTCGGCGTGTGACCCGAG
* *
58936802 GCTCAACTCACCTCTCGCAATATGAGTCGA--TTTTTGAAAAACAGAAA-TT-GAA-AAATACCT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAGAAATACCT
* *
58936862 CAGC--GTGACTCGAG
66 CGGCGTGTGACCCGAG
* *
58936876 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAAACAGAAA-TT-GAA-AAATACCT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAGAAATACCT
*
58936938 CGGCGTGTG-CCCGAT
66 CGGCGTGTGACCCGAG
*
58936953 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTGATTTTTGTTTTTGGAAAAATAGAAATTTAA
1 GCTCAACTCACCTCTCGCAATATGA---G---TTGA---TT-TTTTT-GAAAAACAGAAATTTAA
58937018 AAGAAATACCTCGGCGTGTG-CCCGAG
55 AAGAAATACCTCGGCGTGTGACCCGAG
*
58937044 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTTAAAAGAAATACCT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAGAAATACCT
* ***
58937109 CGGCATGTG-TTTGAG
66 CGGCGTGTGACCCGAG
* *
58937124 GCTCAACTCACCTCTCGCAATATGAGTTGA--TATTTGAAAAACAGAAA-TTAAAA-AAATACGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAGAAATACCT
*
58937185 CGGCGTGCGACCCGAG
66 CGGCGTGTGACCCGAG
* * * * * *
58937201 ACTCAACTCACCTCACGTAATATGCGCTGATTTTTTTGAAAAACAAAAATTTAAAAGAAATACCT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAGAAATACCT
* *
58937266 CGGCATGTG-TCCGAG
66 CGGCGTGTGACCCGAG
* *
58937281 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAATAGAAA-TTAAAAAAAATACCT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAGAAATACCT
* *
58937343 CGGCGTGCGACCTGAG
66 CGGCGTGTGACCCGAG
* * * * *
58937359 ACTCAACTCACATCACGTAATATGAGCTGA--TTTTTGAAAAACAGAAATTT---A-AAATACCT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAGAAATACCT
* **
58937418 CAGCGTACGACCCGAG
66 CGGCGTGTGACCCGAG
** ** * *
58937434 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAGTAAAAATTGAAAAG-AATACCT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAGAAATACCT
* *
58937498 CGGCATGCGACCCGAG
66 CGGCGTGTGACCCGAG
* * ** *
58937514 GCTCAACTCACCTCTTGCACTATGAGTTGATTGATTTTTTTTAAAACAGAAATTGAAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-T--TTTTTTGAAAAACAGAAATTTAAAA
58937573 ATATTTCTTG
Statistics
Matches: 986, Mismatches: 119, Indels: 116
0.81 0.10 0.10
Matches are distributed among these distances:
73 20 0.02
74 60 0.06
75 187 0.19
76 49 0.05
77 103 0.10
78 141 0.14
79 75 0.08
80 159 0.16
81 20 0.02
82 2 0.00
83 26 0.03
85 4 0.00
86 5 0.01
87 5 0.01
88 28 0.03
89 5 0.01
90 2 0.00
91 49 0.05
92 46 0.05
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (81 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAGAAATACCT
CGGCGTGTGACCCGAG
Found at i:58938446 original size:20 final size:19
Alignment explanation
Indices: 58938423--58938475 Score: 70
Period size: 20 Copynumber: 2.7 Consensus size: 19
58938413 TTCATCTTGA
*
58938423 TTTTTCTTTTTTTTCTTTTT
1 TTTTTGTTTTTTTT-TTTTT
58938443 TTTTTGTTTTTTGTTTTTTT
1 TTTTTGTTTTTT-TTTTTTT
*
58938463 GTTTTGTTTTTTT
1 TTTTTGTTTTTTT
58938476 AGGCATAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 1 0.03
20 27 0.90
21 2 0.07
ACGTcount: A:0.00, C:0.04, G:0.08, T:0.89
Consensus pattern (19 bp):
TTTTTGTTTTTTTTTTTTT
Found at i:58938490 original size:1 final size:1
Alignment explanation
Indices: 58938423--58938475 Score: 52
Period size: 1 Copynumber: 53.0 Consensus size: 1
58938413 TTCATCTTGA
* * * * * *
58938423 TTTTTCTTTTTTTTCTTTTTTTTTTGTTTTTTGTTTTTTTGTTTTGTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
58938476 AGGCATAATA
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 40 1.00
ACGTcount: A:0.00, C:0.04, G:0.08, T:0.89
Consensus pattern (1 bp):
T
Found at i:58944537 original size:17 final size:17
Alignment explanation
Indices: 58944515--58944734 Score: 130
Period size: 17 Copynumber: 12.8 Consensus size: 17
58944505 GAGAACCTTT
58944515 TTTTTAAAACACGAGAA
1 TTTTTAAAACACGAGAA
*
58944532 TTTTT-AAACAC-AAAA
1 TTTTTAAAACACGAGAA
* * *
58944547 ATTTTAGAAACATGAAAA
1 TTTTTA-AAACACGAGAA
* * *
58944565 TTTTTAAAACGCGACATTTT
1 TTTTTAAAACACGAGA---A
* *
58944585 TTTTTGAAACACGAGGA
1 TTTTTAAAACACGAGAA
* *
58944602 TTCTTAAAACA-GGGAA
1 TTTTTAAAACACGAGAA
* * *
58944618 ATTTTAGAAACACAAAAA
1 TTTTTA-AAACACGAGAA
58944636 TTTTTAAAACAC-A-ACA
1 TTTTTAAAACACGAGA-A
*
58944652 TTTTTGAAACACGAGAA
1 TTTTTAAAACACGAGAA
*
58944669 TTTTTAAAACA-GGGAA
1 TTTTTAAAACACGAGAA
*
58944685 ATTTTAGAAACACGA-AA
1 TTTTTA-AAACACGAGAA
* *
58944702 ATTTTAAAACACGACATA
1 TTTTTAAAACACGAGA-A
*
58944720 TTTTTTGAAACACGA
1 -TTTTTAAAACACGA
58944735 TTTTTTGTTT
Statistics
Matches: 157, Mismatches: 30, Indels: 30
0.72 0.14 0.14
Matches are distributed among these distances:
15 8 0.05
16 43 0.27
17 63 0.40
18 19 0.12
19 12 0.08
20 12 0.08
ACGTcount: A:0.46, C:0.12, G:0.11, T:0.30
Consensus pattern (17 bp):
TTTTTAAAACACGAGAA
Found at i:58944558 original size:33 final size:33
Alignment explanation
Indices: 58944516--58944712 Score: 166
Period size: 33 Copynumber: 5.8 Consensus size: 33
58944506 AGAACCTTTT
*
58944516 TTTTA-AAACACGAGAATTTTTAAACACA-AAAA
1 TTTTAGAAACACGAAAATTTTTAAA-ACAGAAAA
* * **
58944548 TTTTAGAAACATGAAAATTTTTAAAACGCGACATTTT
1 TTTTAGAAACACGAAAATTTTTAAAAC-AGA-A--AA
* ** * *
58944585 TTTTTGAAACACGAGGATTCTTAAAACAGGGAAA
1 TTTTAGAAACACGAAAATTTTTAAAACA-GAAAA
* * *
58944619 TTTTAGAAACACAAAAATTTTTAAAACACAACA
1 TTTTAGAAACACGAAAATTTTTAAAACAGAAAA
* * *
58944652 TTTTTGAAACACGAGAATTTTTAAAACAGGGAAA
1 TTTTAGAAACACGAAAATTTTTAAAACA-GAAAA
58944686 TTTTAGAAACACGAAAA-TTTTAAAACA
1 TTTTAGAAACACGAAAATTTTTAAAACA
58944713 CGACATATTT
Statistics
Matches: 127, Mismatches: 30, Indels: 15
0.74 0.17 0.09
Matches are distributed among these distances:
32 7 0.06
33 54 0.43
34 41 0.32
35 1 0.01
36 1 0.01
37 23 0.18
ACGTcount: A:0.47, C:0.12, G:0.11, T:0.30
Consensus pattern (33 bp):
TTTTAGAAACACGAAAATTTTTAAAACAGAAAA
Found at i:58944740 original size:67 final size:68
Alignment explanation
Indices: 58944514--58944740 Score: 259
Period size: 67 Copynumber: 3.3 Consensus size: 68
58944504 CGAGAACCTT
* * * *
58944514 TTTTTTAAAACACGAGAATTTTTAAACACA--AAAATTTTAGAAACATGAAAATTTTTAAAACGC
1 TTTTTTGAAACAC--GAATTTTTAAA-ACAGGGAAATTTTAGAAACACGAAAATTTTTAAAACAC
*
58944577 GACATTT
63 GACA-TA
* *
58944584 TTTTTTGAAACACGAGGATTCTTAAAACAGGGAAATTTTAGAAACACAAAAATTTTTAAAACAC-
1 TTTTTTGAAACACGA--ATTTTTAAAACAGGGAAATTTTAGAAACACGAAAATTTTTAAAACACG
*
58944648 A-ACA
64 ACATA
58944652 -TTTTTGAAACACGAGAATTTTTAAAACAGGGAAATTTTAGAAACACGAAAA-TTTTAAAACACG
1 TTTTTTGAAACAC--GAATTTTTAAAACAGGGAAATTTTAGAAACACGAAAATTTTTAAAACACG
58944715 ACATA
64 ACATA
*
58944720 TTTTTTGAAACACGATTTTTT
1 TTTTTTGAAACACGAATTTTT
58944741 GTTTTTTCAA
Statistics
Matches: 136, Mismatches: 12, Indels: 21
0.80 0.07 0.12
Matches are distributed among these distances:
66 11 0.08
67 53 0.39
68 4 0.03
69 18 0.13
70 21 0.15
71 29 0.21
ACGTcount: A:0.44, C:0.12, G:0.11, T:0.33
Consensus pattern (68 bp):
TTTTTTGAAACACGAATTTTTAAAACAGGGAAATTTTAGAAACACGAAAATTTTTAAAACACGAC
ATA
Found at i:58944863 original size:17 final size:17
Alignment explanation
Indices: 58944829--58944883 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 17
58944819 AAGTGAAAAT
58944829 TTTTTGAAATACGA-GAAA
1 TTTTTGAAA-AC-ACGAAA
58944847 TTTTTGAAAACACGAAA
1 TTTTTGAAAACACGAAA
* *
58944864 -ATTTG-AAACACGAGA
1 TTTTTGAAAACACGAAA
58944879 TTTTT
1 TTTTT
58944884 TTTTTGAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
15 9 0.28
16 8 0.25
17 6 0.19
18 9 0.28
ACGTcount: A:0.42, C:0.09, G:0.15, T:0.35
Consensus pattern (17 bp):
TTTTTGAAAACACGAAA
Found at i:58944865 original size:18 final size:17
Alignment explanation
Indices: 58944823--58944876 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 17
58944813 GGCAAAAAGT
*
58944823 GAAAATTTTTTGAAATAC
1 GAAAA-TTTTTGAAACAC
58944841 GAGAAATTTTTGAAAACAC
1 GA-AAATTTTTG-AAACAC
58944860 GAAAA--TTTGAAACAC
1 GAAAATTTTTGAAACAC
58944875 GA
1 GA
58944877 GATTTTTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
15 8 0.24
16 4 0.12
18 11 0.33
19 10 0.30
ACGTcount: A:0.48, C:0.09, G:0.15, T:0.28
Consensus pattern (17 bp):
GAAAATTTTTGAAACAC
Found at i:58944903 original size:20 final size:20
Alignment explanation
Indices: 58944865--58944914 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
58944855 AACACGAAAA
58944865 TTTGAAACACGAGATTTTTTT
1 TTTGAAA-ACGAGATTTTTTT
58944886 TTTGAAAACGCA-ATTTTTTT
1 TTTGAAAACG-AGATTTTTTT
*
58944906 TTTAAAAAC
1 TTTGAAAAC
58944915 ATGAAAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 19 0.70
21 8 0.30
ACGTcount: A:0.34, C:0.10, G:0.10, T:0.46
Consensus pattern (20 bp):
TTTGAAAACGAGATTTTTTT
Found at i:58944932 original size:18 final size:18
Alignment explanation
Indices: 58944911--58944997 Score: 65
Period size: 18 Copynumber: 4.9 Consensus size: 18
58944901 TTTTTTTTAA
*
58944911 AAACATGAAAATTTTTTG
1 AAACACGAAAATTTTTTG
*
58944929 AAACACG---ATTTTTTT
1 AAACACGAAAATTTTTTG
**
58944944 AAACACGCGAATTTTTTG
1 AAACACGAAAATTTTTTG
* * *
58944962 AAAACATGAAGA-TTTGTG
1 -AAACACGAAAATTTTTTG
58944980 AAACACGAGAAATTTTTT
1 AAACACGA-AAATTTTTT
58944998 TTAAAAAAAC
Statistics
Matches: 52, Mismatches: 11, Indels: 11
0.70 0.15 0.15
Matches are distributed among these distances:
15 14 0.27
17 7 0.13
18 20 0.38
19 11 0.21
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.36
Consensus pattern (18 bp):
AAACACGAAAATTTTTTG
Found at i:58944941 original size:15 final size:17
Alignment explanation
Indices: 58944920--58944964 Score: 58
Period size: 15 Copynumber: 2.7 Consensus size: 17
58944910 AAAACATGAA
58944920 AATTTTTTGAAACA-CG
1 AATTTTTTGAAACACCG
*
58944936 -ATTTTTTTAAACACGCG
1 AATTTTTTGAAACAC-CG
58944953 AATTTTTTGAAA
1 AATTTTTTGAAA
58944965 ACATGAAGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 12 0.50
17 2 0.08
18 10 0.42
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.42
Consensus pattern (17 bp):
AATTTTTTGAAACACCG
Found at i:58944958 original size:17 final size:16
Alignment explanation
Indices: 58944920--58944987 Score: 57
Period size: 15 Copynumber: 4.1 Consensus size: 16
58944910 AAAACATGAA
58944920 AATTTTTTGAAACACG
1 AATTTTTTGAAACACG
*
58944936 -ATTTTTTTAAACACGCG
1 AATTTTTTGAAACA--CG
*
58944953 AATTTTTTGAAAACATG
1 AATTTTTTG-AAACACG
* *
58944970 AAGATTTGTGAAACACG
1 AA-TTTTTTGAAACACG
58944987 A
1 A
58944988 GAAATTTTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
15 12 0.29
17 12 0.29
18 12 0.29
19 5 0.12
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (16 bp):
AATTTTTTGAAACACG
Found at i:58945169 original size:17 final size:18
Alignment explanation
Indices: 58945037--58945239 Score: 123
Period size: 18 Copynumber: 11.2 Consensus size: 18
58945027 AATTTTCTAT
*
58945037 AAAACACGAAAAATTTTG
1 AAAACACGAAAATTTTTG
* *
58945055 AAAGCACG-TAATTTTT-
1 AAAACACGAAAATTTTTG
** *
58945071 AAAATGCGAGAA-TTTTG
1 AAAACACGAAAATTTTTG
* *
58945088 GAAACACGAAAATTTATCTAAA
1 AAAACACGAAAATTT-T-T--G
*
58945110 AAAACACGAAAGTTTTTG
1 AAAACACGAAAATTTTTG
* *
58945128 AAATGCGA-GAAATTTTTTTG
1 AAA-AC-ACGAAA-ATTTTTG
*
58945148 AAAACATGAAAATTTTTG
1 AAAACACGAAAATTTTTG
**
58945166 -AAACACGGGAA-TTTTG
1 AAAACACGAAAATTTTTG
* *
58945182 AAAACACGAGAATTTTTT
1 AAAACACGAAAATTTTTG
*
58945200 AGAAACACGAAAATTTCTG
1 A-AAACACGAAAATTTTTG
58945219 AAAAC-CTGAAAATTTTTG
1 AAAACAC-GAAAATTTTTG
58945237 AAA
1 AAA
58945240 TGCGATTTTT
Statistics
Matches: 142, Mismatches: 28, Indels: 30
0.71 0.14 0.15
Matches are distributed among these distances:
16 14 0.10
17 35 0.25
18 41 0.29
19 26 0.18
20 12 0.08
21 1 0.01
22 13 0.09
ACGTcount: A:0.46, C:0.10, G:0.15, T:0.29
Consensus pattern (18 bp):
AAAACACGAAAATTTTTG
Found at i:58945205 original size:19 final size:18
Alignment explanation
Indices: 58945111--58945215 Score: 74
Period size: 17 Copynumber: 5.8 Consensus size: 18
58945101 TTATCTAAAA
*
58945111 AAACACGA-AAGTTTTTG
1 AAACACGAGAATTTTTTG
**
58945128 AAATGCGAGAAATTTTTTTG
1 AAACACGAG-AA-TTTTTTG
* *
58945148 AAAACATGA-AAATTTTTG
1 -AAACACGAGAATTTTTTG
*
58945166 AAACACGGGAA--TTTTG
1 AAACACGAGAATTTTTTG
58945182 AAAACACGAGAATTTTTTAG
1 -AAACACGAGAATTTTTT-G
*
58945202 AAACACGAAAATTT
1 AAACACGAGAATTT
58945216 CTGAAAACCT
Statistics
Matches: 68, Mismatches: 11, Indels: 16
0.72 0.12 0.17
Matches are distributed among these distances:
16 5 0.07
17 22 0.32
18 8 0.12
19 21 0.31
20 7 0.10
21 5 0.07
ACGTcount: A:0.44, C:0.10, G:0.16, T:0.30
Consensus pattern (18 bp):
AAACACGAGAATTTTTTG
Found at i:58945215 original size:36 final size:34
Alignment explanation
Indices: 58945037--58945239 Score: 131
Period size: 34 Copynumber: 5.6 Consensus size: 34
58945027 AATTTTCTAT
* * *
58945037 AAAACACGAAAAATTTTGAAAGCACG-TAATTTTT
1 AAAACACGAAAATTTTTGAAA-CACGAAAATTTTG
** * * *
58945071 AAAATGCGAGAATTTTGGAAACACGAAAATTTATCTAAA
1 AAAACACGAAAATTTTTGAAACACGAAAA-TT-T-T--G
* **
58945110 AAAACACGAAAGTTTTTGAAATGCGAGAAATTTTTTTG
1 AAAACACGAAAATTTTTGAAACACGA-AAA---TTTTG
* **
58945148 AAAACATGAAAATTTTTGAAACACGGGAATTTTG
1 AAAACACGAAAATTTTTGAAACACGAAAATTTTG
*
58945182 AAAACACGAGAATTTTTTAGAAACACGAAAATTTCTG
1 AAAACACGA-AAATTTTT-GAAACACGAAAATTT-TG
58945219 AAAAC-CTGAAAATTTTTGAAA
1 AAAACAC-GAAAATTTTTGAAA
58945240 TGCGATTTTT
Statistics
Matches: 130, Mismatches: 26, Indels: 25
0.72 0.14 0.14
Matches are distributed among these distances:
33 4 0.03
34 31 0.24
35 13 0.10
36 22 0.17
37 12 0.09
38 21 0.16
39 19 0.15
40 4 0.03
41 1 0.01
42 3 0.02
ACGTcount: A:0.46, C:0.10, G:0.15, T:0.29
Consensus pattern (34 bp):
AAAACACGAAAATTTTTGAAACACGAAAATTTTG
Found at i:58945292 original size:71 final size:70
Alignment explanation
Indices: 58945145--58945293 Score: 162
Period size: 71 Copynumber: 2.1 Consensus size: 70
58945135 AGAAATTTTT
*
58945145 TTGAAAACATGAAAATTTTTGAAACACGGGAATTTTGAAAACACGAGAATTTTTTAGAAACACGA
1 TTGAAAACATGAAAATTTTTGAAACACGCGAATTTTGAAAACACGAGAATTTTTTAGAAACACGA
*
58945210 AAATT
66 AAATC
* * * *
58945215 TCTGAAAACCTGAAAATTTTTG-AA-ATGCGATTTTTTTAAAACAC-AGGAATTTCCTTT-GAAA
1 T-TGAAAACATGAAAATTTTTGAAACACGCGA-ATTTTGAAAACACGA-GAATTT--TTTAGAAA
58945276 CACGAAAACTC
61 CACGAAAA-TC
58945287 TTGAAAA
1 TTGAAAA
58945294 TGCGAAGAGT
Statistics
Matches: 67, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
69 5 0.07
70 20 0.30
71 37 0.55
72 5 0.07
ACGTcount: A:0.43, C:0.13, G:0.14, T:0.30
Consensus pattern (70 bp):
TTGAAAACATGAAAATTTTTGAAACACGCGAATTTTGAAAACACGAGAATTTTTTAGAAACACGA
AAATC
Found at i:58946010 original size:14 final size:14
Alignment explanation
Indices: 58945993--58946045 Score: 56
Period size: 14 Copynumber: 3.9 Consensus size: 14
58945983 CTTTTTTATT
58945993 TCTTTCTTTTTCTC
1 TCTTTCTTTTTCTC
*
58946007 TCTTT-TTCTTTTTC
1 TCTTTCTT-TTTCTC
*
58946021 -CTTTCTTCTTCTC
1 TCTTTCTTTTTCTC
*
58946034 TATTTCTTTTTC
1 TCTTTCTTTTTC
58946046 CTTTTTTCGA
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
13 10 0.32
14 21 0.68
ACGTcount: A:0.02, C:0.26, G:0.00, T:0.72
Consensus pattern (14 bp):
TCTTTCTTTTTCTC
Found at i:58946039 original size:25 final size:23
Alignment explanation
Indices: 58945998--58946051 Score: 81
Period size: 25 Copynumber: 2.3 Consensus size: 23
58945988 TTATTTCTTT
*
58945998 CTTTTTCTCTCTTTTTCTTTTTC
1 CTTTTTCTCTCTATTTCTTTTTC
58946021 CTTTCTTCTTCTCTATTTCTTTTTC
1 CTTT-TTC-TCTCTATTTCTTTTTC
58946046 CTTTTT
1 CTTTTT
58946052 TCGACCTTGC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 4 0.14
24 5 0.18
25 19 0.68
ACGTcount: A:0.02, C:0.26, G:0.00, T:0.72
Consensus pattern (23 bp):
CTTTTTCTCTCTATTTCTTTTTC
Found at i:58946053 original size:14 final size:14
Alignment explanation
Indices: 58945995--58946053 Score: 52
Period size: 14 Copynumber: 4.3 Consensus size: 14
58945985 TTTTTATTTC
58945995 TTTCTTTTTCTCTCTT
1 TTTCTTTTTC-CT-TT
58946011 TTTCTTTTTCCTTT
1 TTTCTTTTTCCTTT
* * *
58946025 CTTC-TTCT-C-TA
1 TTTCTTTTTCCTTT
58946036 TTTCTTTTTCCTTT
1 TTTCTTTTTCCTTT
58946050 TTTC
1 TTTC
58946054 GACCTTGCCC
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
11 4 0.12
12 4 0.12
13 4 0.12
14 10 0.29
15 2 0.06
16 10 0.29
ACGTcount: A:0.02, C:0.25, G:0.00, T:0.73
Consensus pattern (14 bp):
TTTCTTTTTCCTTT
Found at i:58946210 original size:21 final size:21
Alignment explanation
Indices: 58946176--58946227 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
58946166 GAAGTTGCTC
58946176 TTTTGTTT--TTTGCTACTCT
1 TTTTGTTTGCTTTGCTACTCT
**
58946195 TTTTGTTTGCTTTGCTTTTCT
1 TTTTGTTTGCTTTGCTACTCT
*
58946216 TTTTGGTTGCTT
1 TTTTGTTTGCTT
58946228 GCGACTTTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 8 0.29
21 20 0.71
ACGTcount: A:0.02, C:0.13, G:0.15, T:0.69
Consensus pattern (21 bp):
TTTTGTTTGCTTTGCTACTCT
Found at i:58946591 original size:30 final size:29
Alignment explanation
Indices: 58946551--58946712 Score: 128
Period size: 30 Copynumber: 5.4 Consensus size: 29
58946541 GTTTTGGGGA
* *
58946551 AAAAGTGTAATTTCGAGAAAATTTAAGGGTT
1 AAAA-TGTAATTT-GAGAAAATTTAGGGGTC
* * *
58946582 AAAATGTAATTTTAAAAAATATAGGGGTC
1 AAAATGTAATTTGAGAAAATTTAGGGGTC
* *
58946611 AAAATATAATTT-AGAAAAGTTTAGGGGGTT
1 AAAATGTAATTTGAGAAAA-TTTA-GGGGTC
* * *
58946641 GAAATATAATTTTGAGAAATTTTAGGGGTC
1 AAAATGTAA-TTTGAGAAAATTTAGGGGTC
* * *
58946671 AAAATGTAATTTTAAAAAAGTTTAGAGGTC
1 AAAATGTAATTTGAGAAAA-TTTAGGGGTC
* *
58946701 AAATTGCAATTT
1 AAAATGTAATTT
58946713 TTAATTAAAT
Statistics
Matches: 106, Mismatches: 20, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
28 5 0.05
29 33 0.31
30 52 0.49
31 11 0.10
32 5 0.05
ACGTcount: A:0.43, C:0.03, G:0.20, T:0.34
Consensus pattern (29 bp):
AAAATGTAATTTGAGAAAATTTAGGGGTC
Found at i:58946609 original size:29 final size:29
Alignment explanation
Indices: 58946568--58946703 Score: 130
Period size: 30 Copynumber: 4.6 Consensus size: 29
58946558 TAATTTCGAG
* * *
58946568 AAAATTTAAGGGTTAAAATGTAATTTTAA
1 AAAATTTAGGGGTCAAAATATAATTTTAA
*
58946597 AAAATATAGGGGTCAAAATATAA-TTTAGA
1 AAAATTTAGGGGTCAAAATATAATTTTA-A
* ** *
58946626 AAAGTTTAGGGGGTTGAAATATAATTTTGAG
1 AAAATTTA-GGGGTCAAAATATAATTTT-AA
* *
58946657 AAATTTTAGGGGTCAAAATGTAATTTTAA
1 AAAATTTAGGGGTCAAAATATAATTTTAA
*
58946686 AAAAGTTTAGAGGTCAAA
1 AAAA-TTTAGGGGTCAAA
58946704 TTGCAATTTT
Statistics
Matches: 86, Mismatches: 16, Indels: 9
0.77 0.14 0.08
Matches are distributed among these distances:
28 4 0.05
29 30 0.35
30 41 0.48
31 10 0.12
32 1 0.01
ACGTcount: A:0.45, C:0.02, G:0.20, T:0.33
Consensus pattern (29 bp):
AAAATTTAGGGGTCAAAATATAATTTTAA
Found at i:58948256 original size:3 final size:3
Alignment explanation
Indices: 58948248--58948304 Score: 53
Period size: 3 Copynumber: 18.3 Consensus size: 3
58948238 CCCTTTTTTG
* *
58948248 TTA TTA TTA TTA TTA TTA TTA -GA TTAA TTAA TCTA ATA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TT-A TT-A T-TA TTA TTA TTA TTA
*
58948295 CTA TTA TTA T
1 TTA TTA TTA T
58948305 ATTTTCCCTT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
2 1 0.02
3 36 0.80
4 7 0.16
5 1 0.02
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:58956271 original size:3 final size:3
Alignment explanation
Indices: 58956263--58956295 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
58956253 AGCTTCACGA
58956263 CCG CCG CCG CCG CCG CCG CCG CCG TCC- CCG CCG
1 CCG CCG CCG CCG CCG CCG CCG CCG -CCG CCG CCG
58956296 TCATCACCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 24 0.86
4 2 0.07
ACGTcount: A:0.00, C:0.67, G:0.30, T:0.03
Consensus pattern (3 bp):
CCG
Found at i:58956346 original size:3 final size:3
Alignment explanation
Indices: 58956338--58956371 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
58956328 GGATACAATC
58956338 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
58956372 TGTCATCCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:58957528 original size:11 final size:14
Alignment explanation
Indices: 58957495--58957521 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
58957485 TTTACATAGA
58957495 ATTTTTAAATTATG
1 ATTTTTAAATTATG
58957509 ATTTTTAAATTAT
1 ATTTTTAAATTAT
58957522 TTTTAAAGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (14 bp):
ATTTTTAAATTATG
Found at i:58957580 original size:31 final size:31
Alignment explanation
Indices: 58957545--58957619 Score: 82
Period size: 32 Copynumber: 2.4 Consensus size: 31
58957535 TAAACCTTTT
* *
58957545 TAAAATTTTATATAAAA-T-ATATATTAAAAAG
1 TAAAATTTTA-AAAAAAGTAATA-ATAAAAAAG
58957576 TAAAAGTTTTAAAAAAAGTAATAATAAAAAAG
1 TAAAA-TTTTAAAAAAAGTAATAATAAAAAAG
*
58957608 TAAAAGTTTAAA
1 TAAAATTTTAAA
58957620 TTTTATATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
31 16 0.42
32 19 0.50
33 3 0.08
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (31 bp):
TAAAATTTTAAAAAAAGTAATAATAAAAAAG
Found at i:58957728 original size:29 final size:30
Alignment explanation
Indices: 58957630--58957720 Score: 87
Period size: 36 Copynumber: 2.9 Consensus size: 30
58957620 TTTTATATAA
*
58957630 ATAATATTTAAAATTTTAAAAAAATAATTTCAAAT
1 ATAATATTTAAAA-TTT--AAAAA-AATGT-AAAT
* *
58957665 ATATATATTTAAAATTTAAAAAAATTTAAAA
1 ATA-ATATTTAAAATTTAAAAAAATGTAAAT
58957696 ATAATATTT-AAATTT-AAAAAATGTA
1 ATAATATTTAAAATTTAAAAAAATGTA
58957721 TATTATAAAA
Statistics
Matches: 53, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
28 9 0.17
29 6 0.11
30 6 0.11
31 6 0.11
32 5 0.09
33 5 0.09
35 6 0.11
36 10 0.19
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.40
Consensus pattern (30 bp):
ATAATATTTAAAATTTAAAAAAATGTAAAT
Found at i:58957777 original size:4 final size:4
Alignment explanation
Indices: 58957768--58957793 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
58957758 TAAAATTAAT
58957768 AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AA
58957794 AATAAGGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:58964514 original size:15 final size:15
Alignment explanation
Indices: 58964489--58964521 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
58964479 GGCCCAATTA
58964489 CAACACCCAATA-CC
1 CAACACCCAATAGCC
58964503 CAACAGCCCAATAGCC
1 CAACA-CCCAATAGCC
58964519 CAA
1 CAA
58964522 AATCATCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.29
15 7 0.41
16 5 0.29
ACGTcount: A:0.42, C:0.45, G:0.06, T:0.06
Consensus pattern (15 bp):
CAACACCCAATAGCC
Found at i:58965506 original size:3 final size:3
Alignment explanation
Indices: 58965500--58965592 Score: 75
Period size: 3 Copynumber: 31.0 Consensus size: 3
58965490 TTTAGTCGCT
* *
58965500 TTA TTA TT- TTG TTTA TT- TTA TTA TTA TTA TTA TTA TTA TTTA CTA
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
* * * * *
58965545 TTA TTA TCT- TTA CTA TTA TTG TTA GTA TTA TTA CTA CTA TTA TTA
1 TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
58965590 TTA
1 TTA
58965593 CATCATTATA
Statistics
Matches: 73, Mismatches: 11, Indels: 12
0.76 0.11 0.12
Matches are distributed among these distances:
2 5 0.07
3 62 0.85
4 6 0.08
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:58965911 original size:87 final size:88
Alignment explanation
Indices: 58965737--58965911 Score: 189
Period size: 89 Copynumber: 2.0 Consensus size: 88
58965727 CATATTTTCG
* * * *
58965737 TATATTTTATAATTTGTATATACATATACTTATATCTATATTTTCTAATTCTTATAAATATATTT
1 TATACTTTATAATTCGTATATACATATA-TTATATCTATATTTTCTAATTATTATAAATATATAT
* *
58965802 ATATGTACATACTTATATTTTTTA
65 AAATGTACATACTTATACTTTTTA
* * *
58965826 TATACTTTCTAATTCGTATATACCTAT-TTATATCTATATTTT-TAATATATTTTAAACATATAT
1 TATACTTTATAATTCGTATATACATATATTATATCTATATTTTCTAAT-TATTAT-AA-ATATAT
58965889 ATAAATGT-CACTA-TT-TACTTTTT
63 ATAAATGTACA-TACTTATACTTTTT
58965912 TTTATTTTTT
Statistics
Matches: 73, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
86 4 0.05
87 26 0.36
88 6 0.08
89 37 0.51
ACGTcount: A:0.34, C:0.10, G:0.02, T:0.54
Consensus pattern (88 bp):
TATACTTTATAATTCGTATATACATATATTATATCTATATTTTCTAATTATTATAAATATATATA
AATGTACATACTTATACTTTTTA
Found at i:58978326 original size:44 final size:44
Alignment explanation
Indices: 58978216--58978555 Score: 198
Period size: 44 Copynumber: 7.8 Consensus size: 44
58978206 ATTATACAGG
* *** *
58978216 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGA-ATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGACA---GAGA
* *
58978262 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGACAGAGA
* * **
58978306 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACA-CTA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGACAGAGA
* * * * *
58978349 TCCTATCTCCCTGA-AGTTACAGTGGAGCGGATT-AAAATAAAGGA
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGACAGA-GA
* * * * * * *
58978393 CCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCA-TCAG-G-
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGACAGAGA
* * * * **
58978434 TCTTATTTCCCTGAGGTTACAGCGGAGTAGACCGAAGA-ATTGCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGACA--G-AGA
* * * *
58978480 TCTTATCTCCCTGAGGTTACAGCGGAGCAGATTAAAGACATA-A
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGACAGAGA
* *
58978523 TCCTATCTCCCTGA-AGTTACAGTGGAGCGGATT
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATT
58978556 AAAATAAAGA
Statistics
Matches: 229, Mismatches: 51, Indels: 31
0.74 0.16 0.10
Matches are distributed among these distances:
41 28 0.12
42 6 0.03
43 58 0.25
44 68 0.30
45 2 0.01
46 65 0.28
47 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (44 bp):
TCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGACAGAGA
Found at i:58978570 original size:87 final size:90
Alignment explanation
Indices: 58978216--58978580 Score: 283
Period size: 87 Copynumber: 4.2 Consensus size: 90
58978206 ATTATACAGG
* * * * *
58978216 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGA-ATTTCAGATCTTATCTCCCTGAGGTT
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACA-TTCAGATCCTATCTCCCTGAAGTT
* ***
58978280 ACAGTGGAGCAGATT-GAAGCCAGAGA
65 ACAGTGGAGCAGATTAAAATAAAGA-A
* *
58978306 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACA--C-TATCCTATCTCCCTGAAGTTA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACATTCAGATCCTATCTCCCTGAAGTTA
* *
58978368 CAGTGGAGCGGATTAAAATAAAGGA
66 CAGTGGAGCAGATTAAAATAAAGAA
* * ** * * * * *
58978393 CCTTATCTCTCTGA-AGTTACAGTAGAGTAGATC---G-CA-TCAGGTCTTATTTCCCTGAGGTT
1 TCTTATCTCCCTGAGA-TTACAGCGGAGCAGATCAAAGACATTCAGATCCTATCTCCCTGAAGTT
* * ** **
58978452 ACAGCGGAGTAGACCGAAGAATTGCAG-A
65 ACAGTGGAGCAGA-TTAA-AA-TAAAGAA
* *
58978480 TCTTATCTCCCTGAGGTTACAGCGGAGCAGATTAAAGACA-T-A-ATCCTATCTCCCTGAAGTTA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACATTCAGATCCTATCTCCCTGAAGTTA
*
58978542 CAGTGGAGCGGATTAAAATAAAGAA
66 CAGTGGAGCAGATTAAAATAAAGAA
*
58978567 TCTTATCTCTCTGA
1 TCTTATCTCCCTGA
58978581 ATTGGCAGTA
Statistics
Matches: 212, Mismatches: 49, Indels: 31
0.73 0.17 0.11
Matches are distributed among these distances:
83 2 0.01
84 2 0.01
85 25 0.12
86 6 0.03
87 102 0.48
88 10 0.05
89 25 0.12
90 36 0.17
91 4 0.02
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.27
Consensus pattern (90 bp):
TCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACATTCAGATCCTATCTCCCTGAAGTTA
CAGTGGAGCAGATTAAAATAAAGAA
Found at i:58979921 original size:3 final size:3
Alignment explanation
Indices: 58979915--58980004 Score: 69
Period size: 3 Copynumber: 30.0 Consensus size: 3
58979905 TTTAGTCGCT
* *
58979915 TTA TTA TT- TTG TTTA TT- TTA TTA TTA TTA TTA TTA TTTA CTA TTA
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA
* * * * *
58979960 TTA TCT- TTA CTA TTA TTG TTA GTA TTA TTA CTA CTA TTA TTA TTA
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
58980005 CCATCATTAT
Statistics
Matches: 70, Mismatches: 11, Indels: 12
0.75 0.12 0.13
Matches are distributed among these distances:
2 5 0.07
3 59 0.84
4 6 0.09
ACGTcount: A:0.28, C:0.06, G:0.03, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:58980324 original size:87 final size:88
Alignment explanation
Indices: 58980150--58980324 Score: 189
Period size: 89 Copynumber: 2.0 Consensus size: 88
58980140 CATATTTTCG
* * * *
58980150 TATATTTTATAATTTGTATATACATATACTTATATCTATATTTTCTAATTCTTATAAATATATTT
1 TATACTTTATAATTCGTATATACATATA-TTATATCTATATTTTCTAATTATTATAAATATATAT
* *
58980215 ATATGTACATACTTATATTTTTTA
65 AAATGTACATACTTATACTTTTTA
* * *
58980239 TATACTTTCTAATTCGTATATACCTAT-TTATATCTATATTTT-TAATATATTTTAAACATATAT
1 TATACTTTATAATTCGTATATACATATATTATATCTATATTTTCTAAT-TATTAT-AA-ATATAT
58980302 ATAAATGT-CACTA-TT-TACTTTTT
63 ATAAATGTACA-TACTTATACTTTTT
58980325 TTATTTTTTA
Statistics
Matches: 73, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
86 4 0.05
87 26 0.36
88 6 0.08
89 37 0.51
ACGTcount: A:0.34, C:0.10, G:0.02, T:0.54
Consensus pattern (88 bp):
TATACTTTATAATTCGTATATACATATATTATATCTATATTTTCTAATTATTATAAATATATATA
AATGTACATACTTATACTTTTTA
Found at i:58981956 original size:50 final size:51
Alignment explanation
Indices: 58981879--58981990 Score: 163
Period size: 51 Copynumber: 2.2 Consensus size: 51
58981869 TAATCCTGTT
* * * ** *
58981879 TGGGACATGACATTGGCACCGAGATGAG-AGGTCCCCTGTAAGACCATGTC
1 TGGGACATGGCATGGGCACCGACATGAGAACATCCCATGTAAGACCATGTC
58981929 TGGGACATGGCATGGGCACCGACATGAGAACATCCCATGTAAGACCATGTC
1 TGGGACATGGCATGGGCACCGACATGAGAACATCCCATGTAAGACCATGTC
58981980 TGGGACATGGC
1 TGGGACATGGC
58981991 TTTGGCATGT
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
50 25 0.45
51 30 0.55
ACGTcount: A:0.27, C:0.24, G:0.30, T:0.19
Consensus pattern (51 bp):
TGGGACATGGCATGGGCACCGACATGAGAACATCCCATGTAAGACCATGTC
Found at i:58985879 original size:32 final size:32
Alignment explanation
Indices: 58985838--58985934 Score: 178
Period size: 32 Copynumber: 3.1 Consensus size: 32
58985828 TACTTTTTTC
*
58985838 GTATACTGATACATGCTATTAACACGAAAAAA
1 GTATACTGATACCTGCTATTAACACGAAAAAA
58985870 GTATACTGATACCTGCTATTAACACGAAAAAA
1 GTATACTGATACCTGCTATTAACACGAAAAAA
58985902 GTATACTGATACCTGCTATTAACAC-AAAAAA
1 GTATACTGATACCTGCTATTAACACGAAAAAA
58985933 GT
1 GT
58985935 GAAAAAAAAT
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
31 8 0.12
32 56 0.88
ACGTcount: A:0.44, C:0.18, G:0.12, T:0.26
Consensus pattern (32 bp):
GTATACTGATACCTGCTATTAACACGAAAAAA
Found at i:58985962 original size:173 final size:176
Alignment explanation
Indices: 58985730--58986047 Score: 500
Period size: 176 Copynumber: 1.8 Consensus size: 176
58985720 TCCATCTCAG
* * *
58985730 ATACTGATACTTGTTATTGACACTAAAAAAGTAAAAAAAAAATTTCCACAAAAAAGGTGGTACCA
1 ATACTGATACCTGCTATTAACACTAAAAAAGTAAAAAAAAAATTTCCACAAAAAAGGTGGTACCA
* *
58985795 GCCATTGGCAGGCCACCAC-CAAAATA-TTTTTTTTACTTTTTTCGTATACTGATACATGCTATT
66 GCCATTGACAGGCCACCACAAAAAATATTTTTTTTTACTTTTTTCGTATACTGATACATGCTATT
58985858 AACACGAAAAAAGTATACTGATACCTGCTATTAACACGAAAAAAGT
131 AACACGAAAAAAGTATACTGATACCTGCTATTAACACGAAAAAAGT
* * *
58985904 ATACTGATACCTGCTATTAACAC-AAAAAAGT-GAAAAAAAATTTCCCACAAAAAAGGTGGTGCT
1 ATACTGATACCTGCTATTAACACTAAAAAAGTAAAAAAAAAATTT-CCACAAAAAAGGTGGTACC
* *
58985967 GGCCATTGACAGGCCACCACAAAAAAATATTTTTTTTTACTTTTTTCGTATACTGATACTTGCTA
65 AGCCATTGACAGGCCACCAC-AAAAAATATTTTTTTTTACTTTTTTCGTATACTGATACATGCTA
58986032 TTAACACGAAAAAAGT
129 TTAACACGAAAAAAGT
58986048 GAAAACAAAA
Statistics
Matches: 130, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
172 11 0.08
173 43 0.33
174 20 0.15
175 6 0.05
176 50 0.38
ACGTcount: A:0.40, C:0.18, G:0.13, T:0.29
Consensus pattern (176 bp):
ATACTGATACCTGCTATTAACACTAAAAAAGTAAAAAAAAAATTTCCACAAAAAAGGTGGTACCA
GCCATTGACAGGCCACCACAAAAAATATTTTTTTTTACTTTTTTCGTATACTGATACATGCTATT
AACACGAAAAAAGTATACTGATACCTGCTATTAACACGAAAAAAGT
Found at i:58987314 original size:32 final size:32
Alignment explanation
Indices: 58987273--58987339 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
58987263 TATTTTTTTT
58987273 TACTTTTTTCGTGTTAATAGCAAGTATCAATA
1 TACTTTTTTCGTGTTAATAGCAAGTATCAATA
* *
58987305 TACTTTTTTCGTGTTAATAGCAGGTATCAGTA
1 TACTTTTTTCGTGTTAATAGCAAGTATCAATA
58987337 TAC
1 TAC
58987340 GAAAAAAGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.43
Consensus pattern (32 bp):
TACTTTTTTCGTGTTAATAGCAAGTATCAATA
Found at i:58987320 original size:147 final size:142
Alignment explanation
Indices: 58987159--58987443 Score: 417
Period size: 147 Copynumber: 2.0 Consensus size: 142
58987149 TTTTTTTTTC
* *
58987159 ACTTTTTTCTTGTTAATAGCAGGTATCAGTATACGAAAAAAGTAAAAAAAAATTATTTTTTTTGT
1 ACTTTTTTCGTGTTAATAGCAGGTATCAGTATACGAAAAAAGTAAAAAAAAA-TA--TTTTTGGT
* * * * *
58987224 GGTGGCCTGCCAATGGCCAACACCACCTTTTTTGTGAGATATTTTTTTTTACTTTTTTCGTGTTA
63 GGTGACCTGCCAATGGCCAACACCAACTTTTTTGTG-G-GATTTTTTTTTACTATTTTCGTGTCA
58987289 ATAGCAAGTATCAATAT
126 ATAGCAAGTATCAATAT
58987306 ACTTTTTTCGTGTTAATAGCAGGTATCAGTATACGAAAAAAGTAAAAAAAAATATTTTTGGTGGT
1 ACTTTTTTCGTGTTAATAGCAGGTATCAGTATACGAAAAAAGTAAAAAAAAATATTTTTGGTGGT
*** *
58987371 GACCTGCCAATGGCTGGCATCAACTTTTTTGTGGGATTTTTTTTTACTATTTTCGTGTCAATAGC
66 GACCTGCCAATGGCCAACACCAACTTTTTTGTGGGATTTTTTTTTACTATTTTCGTGTCAATAGC
*
58987436 AGGTATCA
131 AAGTATCA
58987444 GTATCTCAGA
Statistics
Matches: 126, Mismatches: 12, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
142 35 0.28
143 1 0.01
144 37 0.29
146 2 0.02
147 51 0.40
ACGTcount: A:0.29, C:0.13, G:0.17, T:0.40
Consensus pattern (142 bp):
ACTTTTTTCGTGTTAATAGCAGGTATCAGTATACGAAAAAAGTAAAAAAAAATATTTTTGGTGGT
GACCTGCCAATGGCCAACACCAACTTTTTTGTGGGATTTTTTTTTACTATTTTCGTGTCAATAGC
AAGTATCAATAT
Found at i:58989823 original size:38 final size:38
Alignment explanation
Indices: 58989767--58989844 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
58989757 AGGCAATACA
*
58989767 GTTAATTATAATGTACTAAATATTATACAAAATCTATG
1 GTTAATTATAATGCACTAAATATTATACAAAATCTATG
58989805 GTTAATTATAATGCACTAAATATTATACAAAATCTATG
1 GTTAATTATAATGCACTAAATATTATACAAAATCTATG
58989843 GT
1 GT
58989845 AATCAGGTCC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.38
Consensus pattern (38 bp):
GTTAATTATAATGCACTAAATATTATACAAAATCTATG
Found at i:58998048 original size:107 final size:108
Alignment explanation
Indices: 58997861--58998059 Score: 346
Period size: 107 Copynumber: 1.9 Consensus size: 108
58997851 TTTTTTTAAT
* *
58997861 TAAGGAAATATTTCGCGTTTGGAAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGGTTTC
1 TAAGGAAATATTTCGCGTTTGGAAAATTCGAGAAAACGTGCCCTAACGTGCTGAGTTTCGATTTC
*
58997926 TCGTTCGACCAAATAGCCGAATATCCTTTTTAAACTTTCTAAA
66 TCGTTCGACCAAATAGCCAAATATCCTTTTTAAACTTTCTAAA
*
58997969 TAAGGCAATATTTCGCGTTTGGAAAATT-GAGAAAACGTGCCCTAACGTGCTGAGTTTCGATTTC
1 TAAGGAAATATTTCGCGTTTGGAAAATTCGAGAAAACGTGCCCTAACGTGCTGAGTTTCGATTTC
*
58998033 TCGTTCGACTAAATAGCCAAATATCCT
66 TCGTTCGACCAAATAGCCAAATATCCT
58998060 CTTAAAGCTT
Statistics
Matches: 86, Mismatches: 5, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
107 59 0.69
108 27 0.31
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32
Consensus pattern (108 bp):
TAAGGAAATATTTCGCGTTTGGAAAATTCGAGAAAACGTGCCCTAACGTGCTGAGTTTCGATTTC
TCGTTCGACCAAATAGCCAAATATCCTTTTTAAACTTTCTAAA
Found at i:59005272 original size:132 final size:132
Alignment explanation
Indices: 59005035--59006208 Score: 1960
Period size: 132 Copynumber: 8.9 Consensus size: 132
59005025 TGAAGTCATT
*
59005035 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAAATAGTAGGTCTTGTCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTA
*
59005100 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGC
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
59005165 AG
131 AG
59005167 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTA
59005232 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
*
59005297 AA
131 AG
* *
59005299 AAAGCAGATCTTATCTTCATGTATTGGCGTGAAGTAAATCAAAGATAGTAGGTCTTGTCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTA
*
59005364 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAATAGATCGC
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
59005429 AG
131 AG
* *
59005431 AATGCAGATCTTGTCTTCATGTATTAGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTA
* * *
59005496 TATTGGTAAGAAGTGAATCGACGATGCAGATCTTATCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
59005561 AG
131 AG
59005563 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTA
*
59005628 TATTGATAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
59005693 AG
131 AG
*
59005695 AAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTA
59005760 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
59005825 AG
131 AG
*
59005827 AAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTA
* * *
59005892 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGA
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
59005957 AG
131 AG
59005959 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTA
* * *
59006024 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGA
66 TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
59006089 AG
131 AG
* * * * * * *
59006091 AAAGCA-ACTCTTGTCTTCCTATATTGGTAG-GAAGTGGATCGATA-AT-GCAGATCTTGTCTTC
1 AAAGCAGA-TCTTGTCTTCATGTATTGG-CGTGAAGTAGATC-AAAGATAGTAGGTCTTGTCTTC
* * * * * *
59006152 CCATATTGGTGGCATGAAGTAGATCGAAGATAGCTGATCTTGTCTTCCTATATTGGT
63 CTATATTGGT---AGGAAGTGGATCGACGAT-GCAGATCTTGTCTTCCCATATTGGT
59006209 AAGAAGTGGA
Statistics
Matches: 993, Mismatches: 42, Indels: 11
0.95 0.04 0.01
Matches are distributed among these distances:
131 23 0.02
132 929 0.94
133 3 0.00
134 16 0.02
135 22 0.02
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (132 bp):
AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGGTCTTGTCTTCCTA
TATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
AG
Found at i:59006318 original size:40 final size:40
Alignment explanation
Indices: 59006274--59006425 Score: 225
Period size: 40 Copynumber: 3.8 Consensus size: 40
59006264 AGATTACAGA
*
59006274 TCTTATCTCCCTAAGCAATAGTGGAGCGGATCGCATCAAG
1 TCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAG
** *
59006314 TCTTATCTCCCTAAGCAATAGTGGAGCAGA-CAAAACCACAG
1 TCTTATCTCCCTAAGCAATAGTGGAGCAGATC-GCATCA-AG
59006355 ATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAG
1 -TCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAG
*
59006396 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA
1 TCTTATCTCCCTAAGCAATAGTGGAGCAGA
59006426 CTAAAAACAC
Statistics
Matches: 100, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
39 1 0.01
40 61 0.61
41 4 0.04
42 33 0.33
43 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (40 bp):
TCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAG
Found at i:59006368 original size:82 final size:83
Alignment explanation
Indices: 59006269--59006441 Score: 303
Period size: 82 Copynumber: 2.1 Consensus size: 83
59006259 ATCGAAGATT
*
59006269 ACAGATCTTATCTCCCTAAGCAATAGTGGAGCGGATCGCATCAAGTCTTATCTCCCTAAGCAATA
1 ACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAATA
*
59006334 GTGGAGCAGAC-AAAACC
66 GTGGAGCAGACTAAAAAC
*
59006351 ACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTA
1 ACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAATA
59006416 GTGGAGCAGACTAAAAAC
66 GTGGAGCAGACTAAAAAC
*
59006434 ACAAATCT
1 ACAGATCT
59006442 CATCCCCATG
Statistics
Matches: 86, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
82 74 0.86
83 12 0.14
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (83 bp):
ACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAATA
GTGGAGCAGACTAAAAAC
Found at i:59008702 original size:107 final size:108
Alignment explanation
Indices: 59008515--59008713 Score: 346
Period size: 107 Copynumber: 1.9 Consensus size: 108
59008505 TTTTTTTAAT
*
59008515 TAAGGAAATATTTCGCGTTTGGAAAATTCGAGAAAACGTGCCCTAACATGCTGGGTTTCGGTTTC
1 TAAGGAAATATTTCGCGTTTGGAAAATTCGAGAAAACGTGCCCTAACATGCTGGGTTTCGATTTC
*
59008580 TCGTTCGACCAAATAGCCGAATATCCTTTTTAAACTTTCTAAA
66 TCGTTCGACCAAATAGCCAAATATCCTTTTTAAACTTTCTAAA
* *
59008623 TAAGGCAATATTTCGCGTTTGGAAAA-TCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTTC
1 TAAGGAAATATTTCGCGTTTGGAAAATTCGAGAAAACGTGCCCTAACATGCTGGGTTTCGATTTC
*
59008687 TCGTTCGACTAAATAGCCAAATATCCT
66 TCGTTCGACCAAATAGCCAAATATCCT
59008714 CTTAAAGCTT
Statistics
Matches: 86, Mismatches: 5, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
107 61 0.71
108 25 0.29
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (108 bp):
TAAGGAAATATTTCGCGTTTGGAAAATTCGAGAAAACGTGCCCTAACATGCTGGGTTTCGATTTC
TCGTTCGACCAAATAGCCAAATATCCTTTTTAAACTTTCTAAA
Found at i:59011016 original size:26 final size:26
Alignment explanation
Indices: 59010961--59011017 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
59010951 GCATTATAAA
*
59010961 ATATATAAAAATATATGTATACAAGG
1 ATATATAAAAATATAAGTATACAAGG
*
59010987 ATATATAAATAA-ATAAGATATA-AAGT
1 ATATATAAA-AATATAAG-TATACAAGG
59011013 ATATA
1 ATATA
59011018 GATATGGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 21 0.78
27 6 0.22
ACGTcount: A:0.58, C:0.02, G:0.09, T:0.32
Consensus pattern (26 bp):
ATATATAAAAATATAAGTATACAAGG
Found at i:59011436 original size:29 final size:30
Alignment explanation
Indices: 59011390--59011446 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
59011380 AATTTTTTTG
* *
59011390 CATTTTAACCCTATACTTTTC-AAAATTTA
1 CATTTTAACCCCAAACTTTTCTAAAATTTA
*
59011419 CATTTTGACCCCAAACTTTTCTAAAATT
1 CATTTTAACCCCAAACTTTTCTAAAATT
59011447 AAATTTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 18 0.75
30 6 0.25
ACGTcount: A:0.33, C:0.23, G:0.02, T:0.42
Consensus pattern (30 bp):
CATTTTAACCCCAAACTTTTCTAAAATTTA
Found at i:59011506 original size:60 final size:59
Alignment explanation
Indices: 59011401--59011512 Score: 147
Period size: 60 Copynumber: 1.9 Consensus size: 59
59011391 ATTTTAACCC
* **
59011401 TATACTTTTCAAAATTTACATTTTGACCCCAAACTTTTCTAAAATTAAATTTCAACCAT
1 TATACTTTTCAAAATTTACACTTTGACCCCAAACTTTAATAAAATTAAATTTCAACCAT
*
59011460 TATACTTTCTCAAAATTT-CACTTTGACCCCTAAACTATTAAT-AAATTACATTT
1 TATACTTT-TCAAAATTTACACTTTGACCCC-AAACT-TTAATAAAATTAAATTT
59011513 TAGCCCATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
59 19 0.41
60 24 0.52
61 3 0.07
ACGTcount: A:0.37, C:0.21, G:0.02, T:0.41
Consensus pattern (59 bp):
TATACTTTTCAAAATTTACACTTTGACCCCAAACTTTAATAAAATTAAATTTCAACCAT
Found at i:59012090 original size:8 final size:8
Alignment explanation
Indices: 59012069--59012160 Score: 62
Period size: 8 Copynumber: 11.2 Consensus size: 8
59012059 GGGTTCGCCC
*
59012069 AAAGAAGA
1 AAAGAAAA
*
59012077 AGAGAAAA
1 AAAGAAAA
59012085 AAAG-AAA
1 AAAGAAAA
59012092 AAAGAAAA
1 AAAGAAAA
*
59012100 AGAGAAAGA
1 AAAGAAA-A
* *
59012109 AAATAGAA
1 AAAGAAAA
*
59012117 AAATAAAA
1 AAAGAAAA
*
59012125 AGAGAAAA
1 AAAGAAAA
59012133 AATAGAAAA
1 AA-AGAAAA
59012142 ATAA-AAGAA
1 A-AAGAA-AA
*
59012151 AAATAAAA
1 AAAGAAAA
59012159 AA
1 AA
59012161 TAAAAAACAA
Statistics
Matches: 67, Mismatches: 11, Indels: 12
0.74 0.12 0.13
Matches are distributed among these distances:
7 7 0.10
8 41 0.61
9 18 0.27
10 1 0.01
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.05
Consensus pattern (8 bp):
AAAGAAAA
Found at i:59012092 original size:6 final size:6
Alignment explanation
Indices: 59012083--59012159 Score: 68
Period size: 6 Copynumber: 12.8 Consensus size: 6
59012073 AAGAAGAGAA
* * *
59012083 AAAAAG AAAAAAG AAAAAG AGAAAG AAAATAG AAAAAT AAAAAG AGAAA-
1 AAAAAG -AAAAAG AAAAAG AAAAAG AAAA-AG AAAAAG AAAAAG AAAAAG
* * *
59012132 AAATAG AAAAA- TAAAAG AAAAAT AAAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAA
59012160 ATAAAAAACA
Statistics
Matches: 56, Mismatches: 11, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
5 7 0.12
6 37 0.66
7 12 0.21
ACGTcount: A:0.81, C:0.00, G:0.13, T:0.06
Consensus pattern (6 bp):
AAAAAG
Found at i:59012094 original size:7 final size:7
Alignment explanation
Indices: 59012082--59012172 Score: 57
Period size: 7 Copynumber: 13.6 Consensus size: 7
59012072 GAAGAAGAGA
59012082 AAAAAAG
1 AAAAAAG
59012089 AAAAAAG
1 AAAAAAG
59012096 -AAAAAG
1 AAAAAAG
*
59012102 -AGAAAG
1 AAAAAAG
*
59012108 AAAATAG
1 AAAAAAG
59012115 AAAAATA-
1 AAAAA-AG
*
59012122 AAAAGAG
1 AAAAAAG
*
59012129 AAAAAAT
1 AAAAAAG
*
59012136 AGAAAA-
1 AAAAAAG
*
59012142 ATAAAAG
1 AAAAAAG
*
59012149 -AAAAAT
1 AAAAAAG
*
59012155 AAAAAAT
1 AAAAAAG
*
59012162 AAAAAAC
1 AAAAAAG
59012169 AAAA
1 AAAA
59012173 GTTTAGAACA
Statistics
Matches: 67, Mismatches: 12, Indels: 10
0.75 0.13 0.11
Matches are distributed among these distances:
6 21 0.31
7 45 0.67
8 1 0.01
ACGTcount: A:0.81, C:0.01, G:0.11, T:0.07
Consensus pattern (7 bp):
AAAAAAG
Found at i:59012102 original size:23 final size:23
Alignment explanation
Indices: 59012069--59012142 Score: 94
Period size: 25 Copynumber: 3.1 Consensus size: 23
59012059 GGGTTCGCCC
*
59012069 AAAGAAGAAGAGAAAAAAAGAAA
1 AAAGAAAAAGAGAAAAAAAGAAA
*
59012092 AAAGAAAAAGAGAAAGAAAATAGAA
1 AAAGAAAAAGAGAAA-AAAAGA-AA
*
59012117 AAATAAAAAGAGAAAAAATAGAAA
1 AAAGAAAAAGAGAAAAAA-AGAAA
59012141 AA
1 AA
59012143 TAAAAGAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
23 14 0.32
24 12 0.27
25 18 0.41
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.04
Consensus pattern (23 bp):
AAAGAAAAAGAGAAAAAAAGAAA
Found at i:59012109 original size:19 final size:19
Alignment explanation
Indices: 59012083--59012133 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
59012073 AAGAAGAGAA
59012083 AAAAAGAAAAAAGAAAAAG
1 AAAAAGAAAAAAGAAAAAG
* * *
59012102 AGAAAGAAAATAGAAAAAT
1 AAAAAGAAAAAAGAAAAAG
59012121 AAAAAGAGAAAAA
1 AAAAAGA-AAAAA
59012134 ATAGAAAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 22 0.85
20 4 0.15
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (19 bp):
AAAAAGAAAAAAGAAAAAG
Found at i:59012134 original size:34 final size:33
Alignment explanation
Indices: 59012083--59012167 Score: 102
Period size: 34 Copynumber: 2.6 Consensus size: 33
59012073 AAGAAGAGAA
* *
59012083 AAAAAGAAAAAAG-AAAAAGAGAAAGAA-AATAG
1 AAAAATAAAAAAGAAAAAAGAGAAA-AATAAAAG
*
59012115 AAAAATAAAAAGAGAAAAAATAGAAAAATAAAAG
1 AAAAATAAAAA-AGAAAAAAGAGAAAAATAAAAG
*
59012149 AAAAATAAAAAATAAAAAA
1 AAAAATAAAAAAGAAAAAA
59012168 CAAAAGTTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
32 10 0.22
33 11 0.24
34 25 0.54
ACGTcount: A:0.81, C:0.00, G:0.12, T:0.07
Consensus pattern (33 bp):
AAAAATAAAAAAGAAAAAAGAGAAAAATAAAAG
Found at i:59012143 original size:23 final size:23
Alignment explanation
Indices: 59012076--59012166 Score: 104
Period size: 23 Copynumber: 4.1 Consensus size: 23
59012066 CCCAAAGAAG
*
59012076 AAGAGAAAAAA-AGAAAAAAGAAA
1 AAGAGAAAAAATAG-AAAAATAAA
59012099 AAGAGAAAGAAAATAGAAAAATAAA
1 AAGAG-AA-AAAATAGAAAAATAAA
59012124 AAGAGAAAAAATAGAAAAAT--A
1 AAGAGAAAAAATAGAAAAATAAA
59012145 AA-AG-AAAAATA-AAAAATAAA
1 AAGAGAAAAAATAGAAAAATAAA
59012165 AA
1 AA
59012167 ACAAAAGTTT
Statistics
Matches: 62, Mismatches: 1, Indels: 13
0.82 0.01 0.17
Matches are distributed among these distances:
18 6 0.10
19 7 0.11
20 5 0.08
21 3 0.05
23 18 0.29
24 4 0.06
25 17 0.27
26 2 0.03
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.07
Consensus pattern (23 bp):
AAGAGAAAAAATAGAAAAATAAA
Done.