Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60343961
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 596159 characters in sequence are not A, C, G, or T
File 204 of 204
Found at i:60216969 original size:103 final size:103
Alignment explanation
Indices: 60216848--60217051 Score: 347
Period size: 103 Copynumber: 2.0 Consensus size: 103
60216838 CAAATGGGTC
*
60216848 GGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCCTTCCACATTTAAAATACGGTGGAATCAGCACTTAGCAACC
* **
60216913 ACCAAT-AGGTAGGGGAATCAACACTTAGCAACCCCTCG
66 ACCAATGA-ATAGGGGAATCAACACACAGCAACCCCTCG
60216951 GGGGAATCAGCACTTAGCAACCCCCTTCCACATTTAAAATACGGTGGAATCAGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCCTTCCACATTTAAAATACGGTGGAATCAGCACTTAGCAACC
*
60217016 ACCAATGAATAGGGGAATCAGCACACAGCAACCCCT
66 ACCAATGAATAGGGGAATCAACACACAGCAACCCCT
60217052 TTATATGCAA
Statistics
Matches: 95, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
103 94 0.99
104 1 0.01
ACGTcount: A:0.34, C:0.29, G:0.19, T:0.18
Consensus pattern (103 bp):
GGGGAATCAGCACTTAGCAACCCCCTTCCACATTTAAAATACGGTGGAATCAGCACTTAGCAACC
ACCAATGAATAGGGGAATCAACACACAGCAACCCCTCG
Found at i:60217037 original size:179 final size:179
Alignment explanation
Indices: 60216711--60217050 Score: 488
Period size: 179 Copynumber: 1.9 Consensus size: 179
60216701 AACCGTTGTT
* * * * *
60216711 GGTGGATTCCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGGGG
1 GGTGGAATCAGCACTTAGCACCACCAATGAATAGGGGAATCAACACACAGCAACCCCTTCGGGGG
* * *
60216776 AATCAGCACTTAGCAACCCCCTTCACATTTCAGATGCGGTGGAATCAGCACTTAGCAACCACCAA
66 AATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCACCAA
** * **
60216841 ATGGGTCGGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATAC
131 ATGAATAGGGGAATCAGCACACAGCAACCCCCTTTCACATTTAAAATAC
* **
60216890 GGTGGAATCAGCACTTAGCAACCACCAAT-AGGTAGGGGAATCAACACTTAGCAACCCC-TCGGG
1 GGTGGAATCAGCACTTAGC-ACCACCAATGA-ATAGGGGAATCAACACACAGCAACCCCTTCGGG
60216953 GGAATCAGCACTTAGCAACCCCCTTCCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCAC
64 GGAATCAGCACTTAGCAACCCCCTT-CACATTTAAAATACGGTGGAATCAGCACTTAGCAACCAC
60217018 C-AATGAATAGGGGAATCAGCACACAGCAACCCC
128 CAAATGAATAGGGGAATCAGCACACAGCAACCCC
60217051 TTTATATGCA
Statistics
Matches: 142, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
179 74 0.52
180 68 0.48
ACGTcount: A:0.32, C:0.29, G:0.21, T:0.18
Consensus pattern (179 bp):
GGTGGAATCAGCACTTAGCACCACCAATGAATAGGGGAATCAACACACAGCAACCCCTTCGGGGG
AATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCACCAA
ATGAATAGGGGAATCAGCACACAGCAACCCCCTTTCACATTTAAAATAC
Found at i:60217416 original size:31 final size:30
Alignment explanation
Indices: 60217385--60217442 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
60217375 CCATCCAACT
60217385 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
60217415 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
60217443 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:60220179 original size:38 final size:38
Alignment explanation
Indices: 60220128--60220204 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
60220118 CTAATTGAAG
*
60220128 AATAAATGACAGAGTCTTTGAGGGAGGGGATTTGGTAT
1 AATAAATGACAGAGTCTTTGAGGGAGGGAATTTGGTAT
60220166 AATAAATGACAGAGTCTTTGAGGGAGGGAATTTGGTAT
1 AATAAATGACAGAGTCTTTGAGGGAGGGAATTTGGTAT
60220204 A
1 A
60220205 TCTCAAACTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.34, C:0.05, G:0.32, T:0.29
Consensus pattern (38 bp):
AATAAATGACAGAGTCTTTGAGGGAGGGAATTTGGTAT
Found at i:60251558 original size:19 final size:18
Alignment explanation
Indices: 60251505--60251558 Score: 63
Period size: 19 Copynumber: 2.9 Consensus size: 18
60251495 AATAGAAGTT
*
60251505 TTAAAAATTATTTAACAA
1 TTAAAAATTATTTAATAA
* *
60251523 TTACAAAATTAATTAATGA
1 TTA-AAAATTATTTAATAA
60251542 TTAAAAATTATTATAAT
1 TTAAAAATTATT-TAAT
60251559 TATATTTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
18 11 0.37
19 19 0.63
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.41
Consensus pattern (18 bp):
TTAAAAATTATTTAATAA
Found at i:60253070 original size:33 final size:34
Alignment explanation
Indices: 60253009--60253075 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 34
60252999 TAAAATTTAA
* *
60253009 ATATTTTTAACTTATATTAATAATAAATAATAAT
1 ATATATTTAAATTATATTAATAATAAATAATAAT
* *
60253043 ATATATTTAAATTAT-TTTATATTAAATAATAAT
1 ATATATTTAAATTATATTAATAATAAATAATAAT
60253076 TAAACTTATA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 16 0.55
34 13 0.45
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (34 bp):
ATATATTTAAATTATATTAATAATAAATAATAAT
Found at i:60255344 original size:33 final size:32
Alignment explanation
Indices: 60255282--60255348 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 32
60255272 AATAAAATTT
*
60255282 AAATATTTTATATTATATTAATAATAATAATA
1 AAATATTTTAAATTATATTAATAATAATAATA
*
60255314 AAATATATTTAAATTATTTTATATTAAATAATAAT
1 AAATAT-TTTAAATTATATTA-A-T-AATAATAAT
60255349 TAAACTTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
32 6 0.21
33 12 0.41
34 1 0.03
35 1 0.03
36 9 0.31
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (32 bp):
AAATATTTTAAATTATATTAATAATAATAATA
Found at i:60257147 original size:33 final size:34
Alignment explanation
Indices: 60257080--60257147 Score: 93
Period size: 33 Copynumber: 2.0 Consensus size: 34
60257070 AATAAAATTT
* *
60257080 AAATATTTTTAACTTATATTAATAATAAATAATA
1 AAATATATTTAAATTATATTAATAATAAATAATA
* *
60257114 AAATATATTTAAATTAT-TTTATATTAAATAATA
1 AAATATATTTAAATTATATTAATAATAAATAATA
60257147 A
1 A
60257148 TTAAACTTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
33 15 0.50
34 15 0.50
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (34 bp):
AAATATATTTAAATTATATTAATAATAAATAATA
Found at i:60258143 original size:26 final size:26
Alignment explanation
Indices: 60258107--60258158 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
60258097 AAGATGTAAG
60258107 GTAAAATTAAGAAGGGTAGGTTTCGT
1 GTAAAATTAAGAAGGGTAGGTTTCGT
60258133 GTAAAATTAAGAAGGGTAGGTTTCGT
1 GTAAAATTAAGAAGGGTAGGTTTCGT
60258159 ATTTATTATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.04, G:0.31, T:0.31
Consensus pattern (26 bp):
GTAAAATTAAGAAGGGTAGGTTTCGT
Found at i:60258841 original size:34 final size:33
Alignment explanation
Indices: 60258791--60258858 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 33
60258781 AATAAAATTT
* *
60258791 AAATATTTTTATATTATATTAATAATAAATAATA
1 AAATATATTTAAATTAT-TTAATAATAAATAATA
* *
60258825 AAATATATTTAAATTATTTTATATTAAATAATA
1 AAATATATTTAAATTATTTAATAATAAATAATA
60258858 A
1 A
60258859 TTAAACTTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
33 15 0.50
34 15 0.50
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (33 bp):
AAATATATTTAAATTATTTAATAATAAATAATA
Found at i:60264621 original size:13 final size:13
Alignment explanation
Indices: 60264603--60264632 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
60264593 TTTTAGTTTT
*
60264603 ATTGGGTTGGGTA
1 ATTGGGTTAGGTA
60264616 ATTGGGTTAGGTA
1 ATTGGGTTAGGTA
60264629 ATTG
1 ATTG
60264633 AGTTTGGGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.40
Consensus pattern (13 bp):
ATTGGGTTAGGTA
Found at i:60266899 original size:2 final size:2
Alignment explanation
Indices: 60266892--60266916 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
60266882 CTAATACAAA
60266892 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
60266917 CTTGGAGCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:60267518 original size:27 final size:27
Alignment explanation
Indices: 60267487--60267543 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
60267477 CATATATTGT
60267487 TGGCATTAGCGGTAAGAATATTCAAAC
1 TGGCATTAGCGGTAAGAATATTCAAAC
*
60267514 TGGCATTATCGGTAAGAATATTCAAAC
1 TGGCATTAGCGGTAAGAATATTCAAAC
60267541 TGG
1 TGG
60267544 AATATATCTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (27 bp):
TGGCATTAGCGGTAAGAATATTCAAAC
Found at i:60268779 original size:16 final size:15
Alignment explanation
Indices: 60268758--60268793 Score: 63
Period size: 16 Copynumber: 2.3 Consensus size: 15
60268748 TGTGCTTAGT
60268758 AGGGAAGAAAATAGA
1 AGGGAAGAAAATAGA
60268773 GAGGGAAGAAAATAGA
1 -AGGGAAGAAAATAGA
60268789 AGGGA
1 AGGGA
60268794 TGATGAGAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 5 0.25
16 15 0.75
ACGTcount: A:0.56, C:0.00, G:0.39, T:0.06
Consensus pattern (15 bp):
AGGGAAGAAAATAGA
Found at i:60271127 original size:3 final size:3
Alignment explanation
Indices: 60271119--60271143 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
60271109 GCATATATAT
60271119 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
60271144 GTGAGATGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:60275456 original size:26 final size:26
Alignment explanation
Indices: 60275426--60275476 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
60275416 GCTTAGTAAG
*
60275426 TTCGTATAATGGGAAATTAACTTACT
1 TTCGTATAACGGGAAATTAACTTACT
60275452 TTCGTATAACGGGAAATTAACTTAC
1 TTCGTATAACGGGAAATTAACTTAC
60275477 CATTTAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (26 bp):
TTCGTATAACGGGAAATTAACTTACT
Found at i:60275872 original size:25 final size:25
Alignment explanation
Indices: 60275844--60275924 Score: 85
Period size: 25 Copynumber: 3.2 Consensus size: 25
60275834 AACATGTAAG
60275844 CGGGAAGCTCTTTCGAGCCATATAA
1 CGGGAAGCTCTTTCGAGCCATATAA
*
60275869 CGGGAAGCT-TATGT-GAGCCATGTAA
1 CGGGAAGCTCT-T-TCGAGCCATATAA
* * **
60275894 TGGGAAGCTCATTCGAGCTGTATAA
1 CGGGAAGCTCTTTCGAGCCATATAA
60275919 CGGGAA
1 CGGGAA
60275925 ATTCAAGCGA
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
24 2 0.04
25 42 0.93
26 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (25 bp):
CGGGAAGCTCTTTCGAGCCATATAA
Found at i:60275937 original size:50 final size:51
Alignment explanation
Indices: 60275836--60275938 Score: 120
Period size: 50 Copynumber: 2.0 Consensus size: 51
60275826 CTCATGCAAA
* * * *
60275836 CATGTAAGCGGGAAGCTCTTTCGAGCCATATAACGGGAAGCTTATGTGAGC
1 CATGTAAGCGGGAAGCTCATTCGAGCCATATAACGGGAAGATTAAGCGAGC
* **
60275887 CATGTAA-TGGGAAGCTCATTCGAGCTGTATAACGGGAA-ATTCAAGCGAGC
1 CATGTAAGCGGGAAGCTCATTCGAGCCATATAACGGGAAGATT-AAGCGAGC
60275937 CA
1 CA
60275939 ATATTGGGAA
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
49 2 0.05
50 35 0.80
51 7 0.16
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.22
Consensus pattern (51 bp):
CATGTAAGCGGGAAGCTCATTCGAGCCATATAACGGGAAGATTAAGCGAGC
Found at i:60275993 original size:27 final size:26
Alignment explanation
Indices: 60275953--60276015 Score: 76
Period size: 27 Copynumber: 2.5 Consensus size: 26
60275943 TGGGAAGTTT
*
60275953 TGAAA-AGCCATTAATCAATAAGCTC
1 TGAAAGAGCCATTAATCAAGAAGCTC
* *
60275978 ATGAAAGAGCCTTTAATCAGGAAGCTC
1 -TGAAAGAGCCATTAATCAAGAAGCTC
60276005 TG-AAGAGCCAT
1 TGAAAGAGCCAT
60276016 ATATTGGGAC
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
25 8 0.25
26 7 0.22
27 17 0.53
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.22
Consensus pattern (26 bp):
TGAAAGAGCCATTAATCAAGAAGCTC
Found at i:60277152 original size:13 final size:13
Alignment explanation
Indices: 60277134--60277163 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
60277124 AGCCCAAACT
60277134 CAATTACCCAACC
1 CAATTACCCAACC
*
60277147 CAATTACCCAACT
1 CAATTACCCAACC
60277160 CAAT
1 CAAT
60277164 AAAACTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.20
Consensus pattern (13 bp):
CAATTACCCAACC
Found at i:60277317 original size:9 final size:9
Alignment explanation
Indices: 60277305--60277381 Score: 75
Period size: 9 Copynumber: 8.4 Consensus size: 9
60277295 AATAAAAAAA
60277305 AATTCGGGT
1 AATTCGGGT
*
60277314 AATTCAGGT
1 AATTCGGGT
*
60277323 ATTTTTC-GGT
1 A--ATTCGGGT
*
60277333 AATTCGGTT
1 AATTCGGGT
*
60277342 AATTCGGTT
1 AATTCGGGT
* *
60277351 AATTCAGAT
1 AATTCGGGT
60277360 AATTCGGGT
1 AATTCGGGT
60277369 AATTCGGGT
1 AATTCGGGT
60277378 AATT
1 AATT
60277382 TTTAACCAAA
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
8 3 0.05
9 47 0.82
10 4 0.07
11 3 0.05
ACGTcount: A:0.26, C:0.10, G:0.23, T:0.40
Consensus pattern (9 bp):
AATTCGGGT
Found at i:60288308 original size:16 final size:16
Alignment explanation
Indices: 60288286--60288354 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
60288276 TTTGGTTCGC
60288286 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
60288302 CGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
60288318 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
60288335 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
60288351 TGTA
1 TGTA
60288355 ATAGCTAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:60288332 original size:33 final size:32
Alignment explanation
Indices: 60288286--60288354 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
60288276 TTTGGTTCGC
60288286 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
*
60288318 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGCGTATTGGATTAGAGG
60288351 TGTA
1 TGTA
60288355 ATAGCTAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 6 0.17
33 29 0.83
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (32 bp):
TGTATTGGATTAGAGGCGTATTGGATTAGAGG
Found at i:60288419 original size:44 final size:45
Alignment explanation
Indices: 60288335--60288425 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
60288325 GGATTAGAGG
* * *
60288335 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
60288380 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
60288424 TG
1 TG
60288426 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:60288786 original size:120 final size:120
Alignment explanation
Indices: 60288573--60289040 Score: 893
Period size: 120 Copynumber: 3.9 Consensus size: 120
60288563 ATCATATTTA
*
60288573 AACATAATTATTATTAAATATATTTTAATTACAA-TATATAATTTAATAAAATTCTTAATAATTA
1 AACATAATTATTATTAAATATATTTTAATTA-AACTATATAATTTAAAAAAATTCTTAATAATTA
*
60288637 ATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
65 ATATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
60288693 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
60288758 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
60288813 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
60288878 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
60288933 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
*
60288998 TGTTCTTATATTAATTTACTCAAATCATAATATATGATACTGT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGT
60289041 TGATGCTAGT
Statistics
Matches: 344, Mismatches: 3, Indels: 2
0.99 0.01 0.01
Matches are distributed among these distances:
119 2 0.01
120 342 0.99
ACGTcount: A:0.47, C:0.07, G:0.02, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:60297613 original size:13 final size:13
Alignment explanation
Indices: 60297594--60297655 Score: 61
Period size: 13 Copynumber: 4.8 Consensus size: 13
60297584 TAAACTAAAT
60297594 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
* *
60297607 TTCTCAAAATCAC
1 TTTTCAAAAGCAC
* *
60297620 TTTTCCACAGCAC
1 TTTTCAAAAGCAC
**
60297633 TTTTCAAAAATAC
1 TTTTCAAAAGCAC
*
60297646 TTTTTAAAAG
1 TTTTCAAAAG
60297656 TAATGAAGAA
Statistics
Matches: 37, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
13 37 1.00
ACGTcount: A:0.37, C:0.23, G:0.05, T:0.35
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:60297623 original size:26 final size:26
Alignment explanation
Indices: 60297594--60297655 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
60297584 TAAACTAAAT
60297594 TTTTCAAAAGCACTTCTC-AAAATCAC
1 TTTTCAAAAGCACTTCTCAAAAAT-AC
* * *
60297620 TTTTCCACAGCACTTTTCAAAAATAC
1 TTTTCAAAAGCACTTCTCAAAAATAC
*
60297646 TTTTTAAAAG
1 TTTTCAAAAG
60297656 TAATGAAGAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
26 24 0.83
27 5 0.17
ACGTcount: A:0.37, C:0.23, G:0.05, T:0.35
Consensus pattern (26 bp):
TTTTCAAAAGCACTTCTCAAAAATAC
Found at i:60298719 original size:18 final size:18
Alignment explanation
Indices: 60298684--60298721 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
60298674 GAGTTGATCC
*
60298684 AAATAACTCGATTAATTT
1 AAATAACTCGACTAATTT
60298702 AAATAACTCGAACT-ATTT
1 AAATAACTCG-ACTAATTT
60298720 AA
1 AA
60298722 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 16 0.89
19 2 0.11
ACGTcount: A:0.47, C:0.13, G:0.05, T:0.34
Consensus pattern (18 bp):
AAATAACTCGACTAATTT
Found at i:60301385 original size:3 final size:3
Alignment explanation
Indices: 60301377--60301409 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
60301367 AAGCATAATT
60301377 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
60301410 GCTTACAGCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:60308015 original size:15 final size:15
Alignment explanation
Indices: 60307995--60308023 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
60307985 AAATAAGTCT
60307995 AATTTATTAAAAAGA
1 AATTTATTAAAAAGA
60308010 AATTTATTAAAAAG
1 AATTTATTAAAAAG
60308024 TTAGAAGCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (15 bp):
AATTTATTAAAAAGA
Found at i:60311198 original size:60 final size:58
Alignment explanation
Indices: 60311112--60311223 Score: 152
Period size: 60 Copynumber: 1.9 Consensus size: 58
60311102 GTAGTCAACA
* * * * *
60311112 AACTATTAATATTTTTTTTTTGGTCATTTAATTATAAAAAGTTATAAAATGAATACTT
1 AACTATTAATATTTCTTTTTTAGTCATTCAACTATAAAAAGTTACAAAATGAATACTT
*
60311170 AACTATTAATAAATTTCTTTTTTAGTCATTCAACTATGAAAAGTTACAAAATGA
1 AACTATTAAT--ATTTCTTTTTTAGTCATTCAACTATAAAAAGTTACAAAATGA
60311224 TTACATAGAT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
58 10 0.22
60 36 0.78
ACGTcount: A:0.41, C:0.08, G:0.07, T:0.44
Consensus pattern (58 bp):
AACTATTAATATTTCTTTTTTAGTCATTCAACTATAAAAAGTTACAAAATGAATACTT
Found at i:60312488 original size:19 final size:21
Alignment explanation
Indices: 60312464--60312504 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
60312454 CTACAGCAAT
60312464 CTAAAAA-ACA-TCAAAATTA
1 CTAAAAACACAGTCAAAATTA
60312483 CTAAAAACGACAGTCAAAATTA
1 CTAAAAAC-ACAGTCAAAATTA
60312505 TTTACATGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.37
21 3 0.16
22 9 0.47
ACGTcount: A:0.59, C:0.17, G:0.05, T:0.20
Consensus pattern (21 bp):
CTAAAAACACAGTCAAAATTA
Found at i:60316717 original size:120 final size:120
Alignment explanation
Indices: 60316586--60317114 Score: 877
Period size: 120 Copynumber: 4.4 Consensus size: 120
60316576 CAAACTTTAG
60316586 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
* *
60316651 TTATATGTTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTT
66 TTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
*
60316706 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTATATAGTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
*
60316771 TTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTT
66 TTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
*
60316826 ATTAAATTATATATTTTTATTAAATTATA-TT--TAATAATTATGTTAAATTATATTTTATAGTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
*
60316888 TTATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTT
66 TTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
*
60316943 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAGA-TATATTTTATAGT
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAA-ATTATATTTTATAGT
* * * * * *
60317007 ATCATATATTATTATTTTAGTAAATTCAGATAAAAATATTGATTATTAAGAATTTT
65 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
* *
60317063 ATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAAT
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTAT-TTTAAAT
60317115 ATGATTAAAT
Statistics
Matches: 387, Mismatches: 16, Indels: 11
0.93 0.04 0.03
Matches are distributed among these distances:
117 111 0.29
118 2 0.01
119 2 0.01
120 267 0.69
121 5 0.01
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (120 bp):
ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
TTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTT
Found at i:60316723 original size:18 final size:18
Alignment explanation
Indices: 60316702--60316855 Score: 76
Period size: 18 Copynumber: 8.9 Consensus size: 18
60316692 ATATTAAGAA
60316702 TTTTATTAAATTATATAT
1 TTTTATTAAATTATATAT
60316720 TTTTATTAAA-T-TATA-
1 TTTTATTAAATTATATAT
* *
60316735 -TTTAAT-AATAAT-TAT
1 TTTTATTAAATTATATAT
* * *
60316750 TTTAAATTATATTATATAG
1 TTT-TATTAAATTATATAT
* * *
60316769 TATTA-TATATTAT-GA-
1 TTTTATTAAATTATATAT
*
60316784 TTTTATTAAATTCATATAA
1 TTTTATTAAATT-ATATAT
*** * *
60316803 GAATATTTAATATTA-AGAA
1 TTTTA-TTAA-ATTATATAT
60316822 TTTTATTAAATTATATAT
1 TTTTATTAAATTATATAT
60316840 TTTTATTAAATTATAT
1 TTTTATTAAATTATAT
60316856 TTAATAATTA
Statistics
Matches: 100, Mismatches: 22, Indels: 28
0.67 0.15 0.19
Matches are distributed among these distances:
13 2 0.02
14 7 0.07
15 5 0.05
16 12 0.12
17 17 0.17
18 38 0.38
19 11 0.11
20 5 0.05
21 3 0.03
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.55
Consensus pattern (18 bp):
TTTTATTAAATTATATAT
Found at i:60317007 original size:237 final size:237
Alignment explanation
Indices: 60316586--60317100 Score: 852
Period size: 237 Copynumber: 2.2 Consensus size: 237
60316576 CAAACTTTAG
*
60316586 ATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTATAGTA
1 ATTAAATTATATATTTTTATTAAATTATA-TT--TAATAATTATGTTAAATTATATTTTATAGTA
* **
60316651 TTATATGTTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTAT
63 TTATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTAT
* *
60316716 ATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTATATAGTATTATATATTA
128 ATATTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTATATAGTATCATATATTA
* * * *
60316781 TGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTT
193 TGATTTTAGTAAATTCAGATAAAAATATTGAATATTAAGAATTTT
60316826 ATTAAATTATATATTTTTATTAAATTATATTTAATAATTATGTTAAATTATATTTTATAGTATTA
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAATTATGTTAAATTATATTTTATAGTATTA
60316891 TATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATA
66 TATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATA
* *
60316956 TTTTTATTAAATTATATTTAATAATAATTATGTTAAGA-TATATTTTATAGTATCATATATTATT
131 TTTTTATTAAATTATATTTAATAATAATTATGTTAA-ATTATATTATATAGTATCATATATTATG
*
60317020 ATTTTAGTAAATTCAGATAAAAATATTGATTATTAAGAATTTT
195 ATTTTAGTAAATTCAGATAAAAATATTGAATATTAAGAATTTT
* *
60317063 ATTAAATTATATATTTTAATTAAAATATATTTAATAAT
1 ATTAAATTATATATTTTTATTAAATTATATTTAATAAT
60317101 AATTATGTTT
Statistics
Matches: 259, Mismatches: 15, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
237 227 0.88
238 1 0.00
239 2 0.01
240 29 0.11
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (237 bp):
ATTAAATTATATATTTTTATTAAATTATATTTAATAATTATGTTAAATTATATTTTATAGTATTA
TATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATA
TTTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTATATAGTATCATATATTATGA
TTTTAGTAAATTCAGATAAAAATATTGAATATTAAGAATTTT
Found at i:60317086 original size:18 final size:17
Alignment explanation
Indices: 60317058--60317092 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
60317048 ATTATTAAGA
*
60317058 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
60317075 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
60317093 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:60317347 original size:16 final size:16
Alignment explanation
Indices: 60317328--60317379 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
60317318 GATTTGCTAT
* * *
60317328 TACATCTCTATTCCAT
1 TACACCTCTAATCCAA
60317344 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
60317360 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
60317376 TACA
1 TACA
60317380 GCGAACCAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.31
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:60317767 original size:8 final size:8
Alignment explanation
Indices: 60317756--60317782 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
60317746 TATTTAATTT
60317756 TAAATATA
1 TAAATATA
60317764 TAAATATA
1 TAAATATA
60317772 TAAATATA
1 TAAATATA
60317780 TAA
1 TAA
60317783 GTTTTTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
TAAATATA
Found at i:60322110 original size:91 final size:91
Alignment explanation
Indices: 60321940--60322147 Score: 251
Period size: 91 Copynumber: 2.3 Consensus size: 91
60321930 TAAGCAGGAA
* ** *
60321940 AATTACAAAAATTATTATTTATTATATTGTATTTTTGGGCACTTAGTCTTGAGTATAGTGTTGCA
1 AATTATAAAAATTATTATTTATTATATTGTATTTTTGGAAACTTAGTCTTGAGTATAGTGCTGCA
60322005 AAAATATTTTTTTTATTTTCT-GAAAT
66 AAAATATTTTTTTTATTTT-TAGAAAT
* *
60322031 AATTATAAAAATTATTATTTATTCTATTTTATTTTTGGAAACTTGAGT-TTGAGTATAGTGCTG-
1 AATTATAAAAATTATTATTTATTATATTGTATTTTTGGAAACTT-AGTCTTGAGTATAGTGCTGC
* * **
60322094 TAAAATTTTTTATTTTATTTTTAGGGAT
65 AAAAATATTTT-TTTTATTTTTAGAAAT
* * *
60322122 AACTATAAAAACTATTATTTTTTATA
1 AATTATAAAAATTATTATTTATTATA
60322148 CTTCATTTTT
Statistics
Matches: 100, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
90 10 0.10
91 87 0.87
92 3 0.03
ACGTcount: A:0.33, C:0.05, G:0.11, T:0.50
Consensus pattern (91 bp):
AATTATAAAAATTATTATTTATTATATTGTATTTTTGGAAACTTAGTCTTGAGTATAGTGCTGCA
AAAATATTTTTTTTATTTTTAGAAAT
Found at i:60323092 original size:78 final size:78
Alignment explanation
Indices: 60322963--60323109 Score: 240
Period size: 78 Copynumber: 1.9 Consensus size: 78
60322953 CTCATATTCT
* * *
60322963 ACCATTAAACCATGATCCCTTGATCTCACCGGCTGGGAGAGTCGGTGATCATGTTGATAACGATC
1 ACCATTAAACCATGACCCCTTGATCTCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGATC
60323028 ACCACGGAGTTCG
66 ACCACGGAGTTCG
* * *
60323041 ACCATTAAACCATGACCCCTTGATCTCATCAGCTAGGAGAGTTGGTGATCATGTTGATAGCGATC
1 ACCATTAAACCATGACCCCTTGATCTCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGATC
60323106 ACCA
66 ACCA
60323110 TGGACTTTGT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
78 63 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (78 bp):
ACCATTAAACCATGACCCCTTGATCTCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGATC
ACCACGGAGTTCG
Found at i:60335335 original size:21 final size:21
Alignment explanation
Indices: 60335311--60335351 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
60335301 GAATTTCCCC
60335311 TGTCCGGGTCAG-TTGTTTTAG
1 TGTCCGGGTCAGATT-TTTTAG
*
60335332 TGTCCGGTTCAGATTTTTTA
1 TGTCCGGGTCAGATTTTTTA
60335352 TGCTTCTGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.12, C:0.15, G:0.27, T:0.46
Consensus pattern (21 bp):
TGTCCGGGTCAGATTTTTTAG
Found at i:60339593 original size:19 final size:20
Alignment explanation
Indices: 60339569--60339607 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
60339559 CAATTGTTTT
60339569 AAAA-TTAA-ATAAGTTTAAA
1 AAAATTTAATATAA-TTTAAA
60339588 AAAATTTAATATAATTTAAA
1 AAAATTTAATATAATTTAAA
60339608 TTTTAAGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 10 0.56
21 4 0.22
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (20 bp):
AAAATTTAATATAATTTAAA
Found at i:60342910 original size:15 final size:15
Alignment explanation
Indices: 60342890--60342918 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
60342880 TATGTTCTTG
60342890 ATCATTAAAATTTTA
1 ATCATTAAAATTTTA
60342905 ATCATTAAAATTTT
1 ATCATTAAAATTTT
60342919 CTCACCTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (15 bp):
ATCATTAAAATTTTA
Found at i:60343302 original size:516 final size:518
Alignment explanation
Indices: 60342380--60343330 Score: 1640
Period size: 516 Copynumber: 1.8 Consensus size: 518
60342370 TCGATTTCCT
* *
60342380 TTTTAATTATTAAAATTTTCTCACCTTGTGCAGTTTCTCCCCATAATCCTCAGACTGTATCTTTC
1 TTTTAATCATTAAAATTTTCTCACCTTGTGCAGGTTCTCCCCATAATCCTCAGACTGTATCTTTC
* * *
60342445 TTGGAATTGCTAGATCTTCCTTATGTTCTTGATAATGCATTGGACTCCAGGGATACTCCTGTTTC
66 TTGGAATTGCTAGA--TTCCTTATGTTCTTGACAATGCATCGGACTCCAGGGATACTCCTGCTTC
*
60342510 ATTGCCTCAAAAGGGTAAAGAGTTTTCTATTTACCTTGTCCCACTCAGTTTTGATGATATTACAG
129 ATTGCCTAAAAAGGGTAAAGAGTTTTCTATTTACCTTGTCCCACTCAGTTTTGATGATATTACAG
* *
60342575 CGTCCGGTATGTGATAGGCCAGTTTAGGATTATTCTAGTTCAGGAAAAGACCTTTTCAGGAGTTT
194 CGTCCGGCATGTGATAGGCCAGTTTAGGATTATTCGAGTTCAGGAAAAGACCTTTTCAGGAGTTT
* *
60342640 TGGAGAAATCACCTCGAATAACCAAGCTTTTGAAGCTTTCAAGTCAATAATCCGTTAAACAAATG
259 TGGAGAAATCACCTCGAATAAACAAGCTTTTGAAGCTTTCAAGTCAATAATCCGTCAAACAAATG
* *
60342705 AATGGAGGGCTTTAAACAAAGCCAACAGTTTTTTCGGGTTTACCTATTTATTTTAAATATATAAT
324 AATGGAGGGCTTTAAACAAAGCCAACAATTGTTTCGGGTTTACCTATTTATTTTAAATATATAAT
*
60342770 ACAGAACACACTCAGATAAATATAATATATTATGAAGCTGATTTTCAGTGAGTTTTTGTCACATC
389 ACAGAACACACTCAGATAAATATAATATATTATAAAGCTGATTTTCAGTGAGTTTTTGTCACATC
60342835 TTTTTATTTCTTGCTCAGCAGAGTATTGTTGGGATTGCTAGATCTTATGTTCTTGATCATTAAAA
454 TTTTTATTTCTTGCTCAGCAGAGTATTGTTGGGATTGCTAGATCTTATGTTCTTGATCATTAAAA
*
60342900 TTTTAATCATTAAAATTTTCTCACCTT-TGTAGGTTCTCCCCATAATCCTCAGACTGTATCTTTC
1 TTTTAATCATTAAAATTTTCTCACCTTGTGCAGGTTCTCCCCATAATCCTCAGACTGTATCTTTC
*
60342964 TTGGGATTGCTAGA-T-CTTATGTTCTTGACAATGCATCGGACTCCAGGGATACTCCTGCTTCAT
66 TTGGAATTGCTAGATTCCTTATGTTCTTGACAATGCATCGGACTCCAGGGATACTCCTGCTTCAT
* *
60343027 TGCTTAAAAAGGGTAAAGAGTTTTCTATTTACCTTGTCCCACTCAGTTTTGATGATGTTACAGCG
131 TGCCTAAAAAGGGTAAAGAGTTTTCTATTTACCTTGTCCCACTCAGTTTTGATGATATTACAGCG
*
60343092 TCCGGCATGTGATAGGCCAGTTTAGGATTATTCGAGTTCAGGGAAAATACCTTTTCAGGAGTTTT
196 TCCGGCATGTGATAGGCCAGTTTAGGATTATTCGAGTTCA-GGAAAAGACCTTTTCAGGAGTTTT
*
60343157 GGAGAAATCACCTCGAATAAACAAGCTTTTGAAGCTTTCAAGTTAATAATCCGTCAAA-ATAATG
260 GGAGAAATCACCTCGAATAAACAAGCTTTTGAAGCTTTCAAGTCAATAATCCGTCAAACA-AATG
*
60343221 AATGGAGGGCTTTAAACAAAGCCAACAATTGTTTCGGGTTTACCTATTTATTTTAAATATATAGT
324 AATGGAGGGCTTTAAACAAAGCCAACAATTGTTTCGGGTTTACCTATTTATTTTAAATATATAAT
**
60343286 ATGGAACACACTCAGATAAATATAATATATTATAAAGCTGATTTT
389 ACAGAACACACTCAGATAAATATAATATATTATAAAGCTGATTTT
60343331 GTCTTTGCCC
Statistics
Matches: 407, Mismatches: 22, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
515 146 0.36
516 187 0.46
519 48 0.12
520 26 0.06
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.36
Consensus pattern (518 bp):
TTTTAATCATTAAAATTTTCTCACCTTGTGCAGGTTCTCCCCATAATCCTCAGACTGTATCTTTC
TTGGAATTGCTAGATTCCTTATGTTCTTGACAATGCATCGGACTCCAGGGATACTCCTGCTTCAT
TGCCTAAAAAGGGTAAAGAGTTTTCTATTTACCTTGTCCCACTCAGTTTTGATGATATTACAGCG
TCCGGCATGTGATAGGCCAGTTTAGGATTATTCGAGTTCAGGAAAAGACCTTTTCAGGAGTTTTG
GAGAAATCACCTCGAATAAACAAGCTTTTGAAGCTTTCAAGTCAATAATCCGTCAAACAAATGAA
TGGAGGGCTTTAAACAAAGCCAACAATTGTTTCGGGTTTACCTATTTATTTTAAATATATAATAC
AGAACACACTCAGATAAATATAATATATTATAAAGCTGATTTTCAGTGAGTTTTTGTCACATCTT
TTTATTTCTTGCTCAGCAGAGTATTGTTGGGATTGCTAGATCTTATGTTCTTGATCATTAAAA
Done.