Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60343961
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 596159 characters in sequence are not A, C, G, or T
File 24 of 204
Found at i:6906049 original size:18 final size:18
Alignment explanation
Indices: 6906004--6906052 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
6905994 GATAATAACC
6906004 ATAATAATAAATAATGTA
1 ATAATAATAAATAATGTA
*
6906022 ACAATAATAAATAATGGT-
1 ATAATAATAAATAAT-GTA
*
6906040 ATAATGATAAATA
1 ATAATAATAAATA
6906053 TTTTTAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
18 25 0.93
19 2 0.07
ACGTcount: A:0.59, C:0.02, G:0.08, T:0.31
Consensus pattern (18 bp):
ATAATAATAAATAATGTA
Found at i:6907751 original size:14 final size:14
Alignment explanation
Indices: 6907732--6907776 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
6907722 TTAATTTTCG
6907732 TAAAATATAAAAAC
1 TAAAATATAAAAAC
* *
6907746 TAAAATTTGAAAAAT
1 TAAAATAT-AAAAAC
*
6907761 TAAAATATAAAGAC
1 TAAAATATAAAAAC
6907775 TA
1 TA
6907777 CCCTCTCAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
14 13 0.52
15 12 0.48
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.27
Consensus pattern (14 bp):
TAAAATATAAAAAC
Found at i:6910963 original size:36 final size:36
Alignment explanation
Indices: 6910923--6911008 Score: 163
Period size: 36 Copynumber: 2.4 Consensus size: 36
6910913 ATCTTGCCCG
*
6910923 AAACGACGTCGTTTTGGGGTTTATGGAACCAGGCCA
1 AAACGACGTCGTTTTGGAGTTTATGGAACCAGGCCA
6910959 AAACGACGTCGTTTTGGAGTTTATGGAACCAGGCCA
1 AAACGACGTCGTTTTGGAGTTTATGGAACCAGGCCA
6910995 AAACGACGTCGTTT
1 AAACGACGTCGTTT
6911009 CAATACCCTA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 49 1.00
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.26
Consensus pattern (36 bp):
AAACGACGTCGTTTTGGAGTTTATGGAACCAGGCCA
Found at i:6912550 original size:18 final size:18
Alignment explanation
Indices: 6912529--6912564 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
6912519 GTAGAACCAT
6912529 GCCTTAGTGTATCTACAG
1 GCCTTAGTGTATCTACAG
6912547 GCCTTAGTGTATCTACAG
1 GCCTTAGTGTATCTACAG
6912565 TGAACTTGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (18 bp):
GCCTTAGTGTATCTACAG
Found at i:6914947 original size:42 final size:42
Alignment explanation
Indices: 6914881--6915039 Score: 149
Period size: 42 Copynumber: 3.7 Consensus size: 42
6914871 CAAAAAGAAC
* * * * *
6914881 GTATAATTCATGGACAATATTACTTGGCTTAATGTATGGCAT
1 GTATGATTCATGAACAATAGTACTTAGTTTAATGTATGGCAT
*
6914923 GTATGATTCATGAACAATAGTACTTAGTTTAATGTATGCCAT
1 GTATGATTCATGAACAATAGTACTTAGTTTAATGTATGGCAT
* * *
6914965 GCATGATGTATGAT-ATGAACAATAGTACTCAATTTAAAGTATGGCAT
1 G--T-ATG-AT--TCATGAACAATAGTACTTAGTTTAATGTATGGCAT
* * *
6915012 GTATGATGCATGAACGATGGTACTTAGT
1 GTATGATTCATGAACAATAGTACTTAGT
6915040 AAAAAGCACG
Statistics
Matches: 95, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
42 52 0.55
43 2 0.02
44 4 0.04
45 4 0.04
46 2 0.02
47 30 0.32
48 1 0.01
ACGTcount: A:0.33, C:0.11, G:0.20, T:0.35
Consensus pattern (42 bp):
GTATGATTCATGAACAATAGTACTTAGTTTAATGTATGGCAT
Found at i:6914987 original size:47 final size:49
Alignment explanation
Indices: 6914921--6915024 Score: 140
Period size: 47 Copynumber: 2.2 Consensus size: 49
6914911 AATGTATGGC
* * *
6914921 ATGTATGATTCATGAACAATAGTACTTAGTTTAATGTATGCCATGCATG
1 ATGTATGATTCATGAACAATAGTACTCAATTTAAAGTATGCCATGCATG
* *
6914970 ATGTATGA-T-ATGAACAATAGTACTCAATTTAAAGTATGGCATGTATG
1 ATGTATGATTCATGAACAATAGTACTCAATTTAAAGTATGCCATGCATG
*
6915017 ATGCATGA
1 ATGTATGA
6915025 ACGATGGTAC
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
47 40 0.82
48 1 0.02
49 8 0.16
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.35
Consensus pattern (49 bp):
ATGTATGATTCATGAACAATAGTACTCAATTTAAAGTATGCCATGCATG
Found at i:6922809 original size:16 final size:17
Alignment explanation
Indices: 6922785--6922819 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
6922775 GAATGGAATT
6922785 AAATGTTTG-AAATTTA
1 AAATGTTTGAAAATTTA
*
6922801 AAATTTTTGAAAATTTA
1 AAATGTTTGAAAATTTA
6922818 AA
1 AA
6922820 TTTGATTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (17 bp):
AAATGTTTGAAAATTTA
Found at i:6922820 original size:16 final size:15
Alignment explanation
Indices: 6922783--6922822 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
6922773 TAGAATGGAA
*
6922783 TTAAATGTTTGAAAT
1 TTAAATTTTTGAAAT
6922798 TTAAAATTTTTGAAAAT
1 TT-AAATTTTTG-AAAT
6922815 TTAAATTT
1 TTAAATTT
6922823 GATTTATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 2 0.09
16 14 0.64
17 6 0.27
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.50
Consensus pattern (15 bp):
TTAAATTTTTGAAAT
Found at i:6922950 original size:75 final size:80
Alignment explanation
Indices: 6922804--6922953 Score: 204
Period size: 75 Copynumber: 1.9 Consensus size: 80
6922794 AAATTTAAAA
* *
6922804 TTTTTGAAAATTTAAATTTGATTTATTTTGAATTTAAATTTTTTAAAAACAAAAACTTAAAATTT
1 TTTTAGAAAAATTAAATTTGATTTATTTTGAATTTAAATTTTTTAAAAACAAAAACTTAAAATTT
6922869 TAAAAGTTAACAAAC
66 TAAAAGTTAACAAAC
* * *
6922884 TTTTAGAAAAATTAAATTTGA-TT-TTTT-ATTTTAAA-TTTTT-GAAATAAAAACTTAAATATT
1 TTTTAGAAAAATTAAATTTGATTTATTTTGAATTTAAATTTTTTAAAAACAAAAACTTAAA-ATT
6922944 TT-AAAGTTAA
65 TTAAAAGTTAA
6922954 GAATTTTTTT
Statistics
Matches: 64, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
75 22 0.34
76 10 0.16
77 7 0.11
78 4 0.06
79 2 0.03
80 19 0.30
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.46
Consensus pattern (80 bp):
TTTTAGAAAAATTAAATTTGATTTATTTTGAATTTAAATTTTTTAAAAACAAAAACTTAAAATTT
TAAAAGTTAACAAAC
Found at i:6924610 original size:17 final size:17
Alignment explanation
Indices: 6924588--6924621 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
6924578 TTAAATTAAT
*
6924588 TTAAATTAATTTTCCAA
1 TTAAATAAATTTTCCAA
6924605 TTAAATAAATTTTCCAA
1 TTAAATAAATTTTCCAA
6924622 CCCAATTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (17 bp):
TTAAATAAATTTTCCAA
Found at i:6925798 original size:21 final size:21
Alignment explanation
Indices: 6925761--6925825 Score: 69
Period size: 23 Copynumber: 3.0 Consensus size: 21
6925751 CCTGATCAGT
*
6925761 ATACGACACATAAGTGCCTGA
1 ATACGACACAAAAGTGCCTGA
* *
6925782 A-ACGACACACGAAGTGCCTAAA
1 ATACGACACA-AAAGTGCCT-GA
6925804 ATACGACACATAAAGTGCCTGA
1 ATACGACACA-AAAGTGCCTGA
6925826 TCGGCAAAGC
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
20 8 0.22
21 9 0.25
22 3 0.08
23 16 0.44
ACGTcount: A:0.42, C:0.25, G:0.18, T:0.15
Consensus pattern (21 bp):
ATACGACACAAAAGTGCCTGA
Found at i:6926976 original size:26 final size:27
Alignment explanation
Indices: 6926923--6926986 Score: 112
Period size: 26 Copynumber: 2.4 Consensus size: 27
6926913 ATAAAAAATA
6926923 ACCAAAATATTATAACTTTTTTTTATTT
1 ACCAAAATATTATAAC-TTTTTTTATTT
6926951 ACCAAAATATTATAA-TTTTTTTATTT
1 ACCAAAATATTATAACTTTTTTTATTT
6926977 ACCAAAATAT
1 ACCAAAATAT
6926987 ACCAAAAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
26 21 0.58
28 15 0.42
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.48
Consensus pattern (27 bp):
ACCAAAATATTATAACTTTTTTTATTT
Found at i:6927698 original size:15 final size:15
Alignment explanation
Indices: 6927678--6927707 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
6927668 ATTACCAAAA
6927678 TAGAGTTTATTAAAT
1 TAGAGTTTATTAAAT
6927693 TAGAGTTTATTAAAT
1 TAGAGTTTATTAAAT
6927708 GCGAATAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47
Consensus pattern (15 bp):
TAGAGTTTATTAAAT
Found at i:6928027 original size:27 final size:28
Alignment explanation
Indices: 6927993--6928057 Score: 123
Period size: 27 Copynumber: 2.4 Consensus size: 28
6927983 TTTTTTTGGT
6927993 ATATTTTGGTAAATAAAAAAAA-TTATA
1 ATATTTTGGTAAATAAAAAAAAGTTATA
6928020 ATATTTTGGTAAATAAAAAAAAGTTATA
1 ATATTTTGGTAAATAAAAAAAAGTTATA
6928048 ATATTTTGGT
1 ATATTTTGGT
6928058 TATTTTTTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 22 0.59
28 15 0.41
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.40
Consensus pattern (28 bp):
ATATTTTGGTAAATAAAAAAAAGTTATA
Found at i:6931087 original size:10 final size:10
Alignment explanation
Indices: 6931069--6931100 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
6931059 ATAATTATAC
*
6931069 TACAAATATT
1 TACATATATT
6931079 TACATATATT
1 TACATATATT
6931089 TACATATATT
1 TACATATATT
6931099 TA
1 TA
6931101 TTACACGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (10 bp):
TACATATATT
Found at i:6931287 original size:22 final size:22
Alignment explanation
Indices: 6931259--6931303 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
6931249 TATTTTCCAT
*
6931259 TTTAGTCCTTTTTCCTAATTAC
1 TTTAGTCATTTTTCCTAATTAC
*
6931281 TTTAGTCATTTTTCCTACTTAC
1 TTTAGTCATTTTTCCTAATTAC
6931303 T
1 T
6931304 CTTAATTAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.22, G:0.04, T:0.56
Consensus pattern (22 bp):
TTTAGTCATTTTTCCTAATTAC
Found at i:6933721 original size:25 final size:26
Alignment explanation
Indices: 6933657--6933721 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 26
6933647 AAGCTCTCTC
*
6933657 TCGAGCCATATAACGGGAAGCTCATG
1 TCGAGCTATATAACGGGAAGCTCATG
*
6933683 T-GAG-TCATGTAACGGGAAGCTCAT-
1 TCGAGCT-ATATAACGGGAAGCTCATG
*
6933707 TCGAGCTATACAACG
1 TCGAGCTATATAACG
6933722 AAAAGTTCAT
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
24 1 0.03
25 29 0.91
26 2 0.06
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.22
Consensus pattern (26 bp):
TCGAGCTATATAACGGGAAGCTCATG
Found at i:6937226 original size:36 final size:37
Alignment explanation
Indices: 6937151--6937257 Score: 105
Period size: 37 Copynumber: 2.9 Consensus size: 37
6937141 AAAAATAAGG
* **
6937151 AGATGAACATGAGTGATTCTTTGCAAATAAAAGGTGA
1 AGATAAACATGAGTGATTCTTTGCAAATAAAAGACGA
6937188 AGATAAACATGAGT-AGTTCTTTGCAAA-AAAAGACGA
1 AGATAAACATGAGTGA-TTCTTTGCAAATAAAAGACGA
* * * *
6937224 AGAT-GACA-GATGTGATTCTCTGTAAACAAAAGAC
1 AGATAAACATGA-GTGATTCTTTGCAAATAAAAGAC
6937258 AGAGATGAAT
Statistics
Matches: 60, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
34 2 0.03
35 14 0.23
36 20 0.33
37 24 0.40
ACGTcount: A:0.43, C:0.11, G:0.21, T:0.24
Consensus pattern (37 bp):
AGATAAACATGAGTGATTCTTTGCAAATAAAAGACGA
Found at i:6937592 original size:15 final size:16
Alignment explanation
Indices: 6937562--6937599 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
6937552 TTTTGTTTAC
6937562 AAATTTAAATTTTCAA
1 AAATTTAAATTTTCAA
6937578 AAATTTAAA-TTTCAA
1 AAATTTAAATTTTCAA
*
6937593 AATTTTA
1 AAATTTA
6937600 CTCCCATTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (16 bp):
AAATTTAAATTTTCAA
Found at i:6938008 original size:9 final size:9
Alignment explanation
Indices: 6937981--6938040 Score: 50
Period size: 9 Copynumber: 6.2 Consensus size: 9
6937971 TTAATTTTTT
6937981 AAATATAAA
1 AAATATAAA
6937990 AAAT-TCAAA
1 AAATAT-AAA
6937999 AAATATAAA
1 AAATATAAA
6938008 AAAGTATTTAAA
1 AAA-TA--TAAA
*
6938020 AAAGCATAAA
1 AAA-TATAAA
*
6938030 AATTATAAA
1 AAATATAAA
6938039 AA
1 AA
6938041 TATTTTTAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
8 1 0.02
9 24 0.56
10 9 0.21
12 9 0.21
ACGTcount: A:0.70, C:0.03, G:0.03, T:0.23
Consensus pattern (9 bp):
AAATATAAA
Found at i:6945553 original size:17 final size:16
Alignment explanation
Indices: 6945514--6945558 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
6945504 TACTTTATGC
*
6945514 AAAATATTTTTTATTTA
1 AAAATA-TTTTTATTCA
*
6945531 ATAATATTTTTATCTCA
1 AAAATATTTTTAT-TCA
6945548 AAAATATTTTT
1 AAAATATTTTT
6945559 GAAAAGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 7 0.29
17 17 0.71
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (16 bp):
AAAATATTTTTATTCA
Found at i:6951161 original size:13 final size:13
Alignment explanation
Indices: 6951143--6951168 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6951133 ATTTTGGTAC
6951143 TTTTGGTTCAATA
1 TTTTGGTTCAATA
6951156 TTTTGGTTCAATA
1 TTTTGGTTCAATA
6951169 GCATGTATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.15, T:0.54
Consensus pattern (13 bp):
TTTTGGTTCAATA
Found at i:6953039 original size:16 final size:16
Alignment explanation
Indices: 6953014--6953047 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
6953004 TGCAAGGGAC
6953014 ACACGGCCGTGTCACT
1 ACACGGCCGTGTCACT
* *
6953030 ACACGTCCGTGTCTCT
1 ACACGGCCGTGTCACT
6953046 AC
1 AC
6953048 CCGTATGTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.38, G:0.21, T:0.24
Consensus pattern (16 bp):
ACACGGCCGTGTCACT
Found at i:6956954 original size:19 final size:20
Alignment explanation
Indices: 6956930--6957060 Score: 88
Period size: 21 Copynumber: 6.3 Consensus size: 20
6956920 CAAATGTGCC
6956930 AACAGAAGCT-TGAA-AGCTG
1 AACAGAAGCTAT-AAGAGCTG
6956949 AACAGAAGCTCATAAGAGCTG
1 AACAGAAGCT-ATAAGAGCTG
* * * *
6956970 AACAGAAACTCTTAAGAGTTA
1 AACAGAAGCT-ATAAGAGCTG
6956991 AACAGAAGATCT-TAAGAGCTG
1 AACAGAAG--CTATAAGAGCTG
** * *
6957012 AACAGAAAATCATTAGAGTTG
1 AACAGAAGCT-ATAAGAGCTG
* *
6957033 AACAGAAGCTCGTAAGAGTTG
1 AACAGAAGCT-ATAAGAGCTG
6957054 AACAGAA
1 AACAGAA
6957061 AGTAAAACAC
Statistics
Matches: 90, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
19 11 0.12
20 2 0.02
21 75 0.83
23 2 0.02
ACGTcount: A:0.45, C:0.15, G:0.22, T:0.18
Consensus pattern (20 bp):
AACAGAAGCTATAAGAGCTG
Found at i:6956970 original size:21 final size:21
Alignment explanation
Indices: 6956944--6957060 Score: 126
Period size: 21 Copynumber: 5.6 Consensus size: 21
6956934 GAAGCTTGAA
6956944 AGCTGAACAGAAGCTCATAAG
1 AGCTGAACAGAAGCTCATAAG
* *
6956965 AGCTGAACAGAAACTCTTAAG
1 AGCTGAACAGAAGCTCATAAG
* * * *
6956986 AGTTAAACAGAAGATCTTAAG
1 AGCTGAACAGAAGCTCATAAG
** *
6957007 AGCTGAACAGAAAATCATTAG
1 AGCTGAACAGAAGCTCATAAG
* *
6957028 AGTTGAACAGAAGCTCGTAAG
1 AGCTGAACAGAAGCTCATAAG
*
6957049 AGTTGAACAGAA
1 AGCTGAACAGAA
6957061 AGTAAAACAC
Statistics
Matches: 80, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 80 1.00
ACGTcount: A:0.44, C:0.15, G:0.22, T:0.19
Consensus pattern (21 bp):
AGCTGAACAGAAGCTCATAAG
Found at i:6956997 original size:42 final size:42
Alignment explanation
Indices: 6956949--6957061 Score: 156
Period size: 42 Copynumber: 2.7 Consensus size: 42
6956939 TTGAAAGCTG
*
6956949 AACAGAAGCTCATAAGAGCTGAACAGAAACTC-TTAAGAGTTA
1 AACAGAAGCTCATAAGAGCTGAACAGAAAATCATT-AGAGTTA
* * *
6956991 AACAGAAGATCTTAAGAGCTGAACAGAAAATCATTAGAGTTG
1 AACAGAAGCTCATAAGAGCTGAACAGAAAATCATTAGAGTTA
* *
6957033 AACAGAAGCTCGTAAGAGTTGAACAGAAA
1 AACAGAAGCTCATAAGAGCTGAACAGAAA
6957062 GTAAAACACG
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
42 61 0.97
43 2 0.03
ACGTcount: A:0.46, C:0.14, G:0.21, T:0.19
Consensus pattern (42 bp):
AACAGAAGCTCATAAGAGCTGAACAGAAAATCATTAGAGTTA
Found at i:6958741 original size:18 final size:19
Alignment explanation
Indices: 6958710--6958749 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
6958700 AGGCTAACCA
6958710 TGACTGTTTCTAGCTACTT
1 TGACTGTTTCTAGCTACTT
*
6958729 TGAC-GTTTTTAGCTACTT
1 TGACTGTTTCTAGCTACTT
6958747 TGA
1 TGA
6958750 AACGCTAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.47
Consensus pattern (19 bp):
TGACTGTTTCTAGCTACTT
Found at i:6963337 original size:36 final size:31
Alignment explanation
Indices: 6963297--6963373 Score: 91
Period size: 36 Copynumber: 2.3 Consensus size: 31
6963287 TTTTACTGTC
6963297 ACTGTAATGGGCTATAAGGCCCACACTGATACTGA
1 ACTGTAATGGGCTA-AA-GCCCA-ACTGA-ACTGA
*
6963332 TACTGTAATAGGCTAAAGCCCAACTGAACTGA
1 -ACTGTAATGGGCTAAAGCCCAACTGAACTGA
6963364 ACTGTTAATG
1 ACTG-TAATG
6963374 AATTGGGCTT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
31 4 0.11
32 9 0.24
33 5 0.13
34 5 0.13
35 2 0.05
36 13 0.34
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.25
Consensus pattern (31 bp):
ACTGTAATGGGCTAAAGCCCAACTGAACTGA
Found at i:6965628 original size:9 final size:9
Alignment explanation
Indices: 6965616--6965816 Score: 67
Period size: 9 Copynumber: 23.6 Consensus size: 9
6965606 TGATATATAT
6965616 TTATGTAAG
1 TTATGTAAG
6965625 TTATGTAAG
1 TTATGTAAG
*
6965634 TTATGATATG
1 TTATG-TAAG
* * **
6965644 ATATAT-TT
1 TTATGTAAG
6965652 TTATGT-A-
1 TTATGTAAG
*
6965659 TTACGTAAG
1 TTATGTAAG
*
6965668 TTATGATATG
1 TTATG-TAAG
* * *
6965678 ATATCT-AT
1 TTATGTAAG
6965686 TTATGTAAG
1 TTATGTAAG
*
6965695 TTATGTAAT
1 TTATGTAAG
6965704 TTATG--A-
1 TTATGTAAG
*
6965710 -TATGTATAT
1 TTATGTA-AG
6965719 TTATGT-A-
1 TTATGTAAG
6965726 TTATGTAAG
1 TTATGTAAG
*
6965735 TTATGATATG
1 TTATG-TAAG
* * *
6965745 ATATAT-AT
1 TTATGTAAG
6965753 TTATGTAAG
1 TTATGTAAG
6965762 TTATGTAA-
1 TTATGTAAG
*
6965770 TT-TAT-AG
1 TTATGTAAG
*
6965777 -TATGATATAT
1 TTATG-TA-AG
6965787 TTATGT-A-
1 TTATGTAAG
6965794 TTATGTAAG
1 TTATGTAAG
6965803 TTATGTAAG
1 TTATGTAAG
6965812 TTATG
1 TTATG
6965817 ATCCACAGTT
Statistics
Matches: 141, Mismatches: 29, Indels: 44
0.66 0.14 0.21
Matches are distributed among these distances:
5 4 0.03
6 2 0.01
7 21 0.15
8 22 0.16
9 63 0.45
10 25 0.18
11 4 0.03
ACGTcount: A:0.33, C:0.01, G:0.16, T:0.50
Consensus pattern (9 bp):
TTATGTAAG
Found at i:6965630 original size:36 final size:36
Alignment explanation
Indices: 6965589--6965818 Score: 305
Period size: 36 Copynumber: 6.4 Consensus size: 36
6965579 ATCCAAAGTT
6965589 TTATGTAAGTTATGATATGATATATATTTATGTAAG
1 TTATGTAAGTTATGATATGATATATATTTATGTAAG
*
6965625 TTATGTAAGTTATGATATGATATATTTTTATGT-A-
1 TTATGTAAGTTATGATATGATATATATTTATGTAAG
* *
6965659 TTACGTAAGTTATGATATGATATCTATTTATGTAAG
1 TTATGTAAGTTATGATATGATATATATTTATGTAAG
*
6965695 TTATGTAATTTATGATATG---TATATTTATGT-A-
1 TTATGTAAGTTATGATATGATATATATTTATGTAAG
6965726 TTATGTAAGTTATGATATGATATATATTTATGTAAG
1 TTATGTAAGTTATGATATGATATATATTTATGTAAG
*
6965762 TTATGTAATTTAT-AGTATGATATATTTATGTATTATGTAAG
1 TTATGTAAGTTATGA-TATGATATA--TA--T-TTATGTAAG
6965803 TTATGTAAGTTATGAT
1 TTATGTAAGTTATGAT
6965819 CCACAGTTTT
Statistics
Matches: 170, Mismatches: 10, Indels: 23
0.84 0.05 0.11
Matches are distributed among these distances:
31 18 0.11
32 1 0.01
33 10 0.06
34 41 0.24
35 4 0.02
36 70 0.41
38 2 0.01
40 1 0.01
41 22 0.13
42 1 0.01
ACGTcount: A:0.34, C:0.01, G:0.16, T:0.50
Consensus pattern (36 bp):
TTATGTAAGTTATGATATGATATATATTTATGTAAG
Found at i:6965715 original size:14 final size:14
Alignment explanation
Indices: 6965696--6965744 Score: 62
Period size: 14 Copynumber: 3.3 Consensus size: 14
6965686 TTATGTAAGT
6965696 TATGTAATTTATGA
1 TATGTAATTTATGA
6965710 TATGTATATTTATGTA
1 TATGTA-ATTTATG-A
*
6965726 TTATGTAAGTTATGA
1 -TATGTAATTTATGA
6965741 TATG
1 TATG
6965745 ATATATATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
14 10 0.32
15 8 0.26
16 7 0.23
17 6 0.19
ACGTcount: A:0.33, C:0.00, G:0.16, T:0.51
Consensus pattern (14 bp):
TATGTAATTTATGA
Found at i:6965754 original size:67 final size:68
Alignment explanation
Indices: 6965589--6965807 Score: 370
Period size: 67 Copynumber: 3.2 Consensus size: 68
6965579 ATCCAAAGTT
*
6965589 TTATGTAAGTTATGATATGATATATATTTATGTAAGTTATGTAAGTTATGATATGATATATTTTT
1 TTATGTAAGTTATGATATGATATATATTTATGTAAGTTATGTAATTTATGATATGATATA--TTT
6965654 ATGTA
64 ATGTA
* *
6965659 TTACGTAAGTTATGATATGATATCTATTTATGTAAGTTATGTAATTTATGATATG-TATATTTAT
1 TTATGTAAGTTATGATATGATATATATTTATGTAAGTTATGTAATTTATGATATGATATATTTAT
6965723 GTA
66 GTA
6965726 TTATGTAAGTTATGATATGATATATATTTATGTAAGTTATGTAATTTAT-AGTATGATATATTTA
1 TTATGTAAGTTATGATATGATATATATTTATGTAAGTTATGTAATTTATGA-TATGATATATTTA
6965790 TGTA
65 TGTA
6965794 TTATGTAAGTTATG
1 TTATGTAAGTTATG
6965808 TAAGTTATGA
Statistics
Matches: 142, Mismatches: 5, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
66 1 0.01
67 59 0.42
68 26 0.18
69 4 0.03
70 52 0.37
ACGTcount: A:0.34, C:0.01, G:0.16, T:0.50
Consensus pattern (68 bp):
TTATGTAAGTTATGATATGATATATATTTATGTAAGTTATGTAATTTATGATATGATATATTTAT
GTA
Found at i:6965851 original size:94 final size:92
Alignment explanation
Indices: 6965752--6965950 Score: 280
Period size: 98 Copynumber: 2.1 Consensus size: 92
6965742 ATGATATATA
* *
6965752 TTTATGTAAGTTATGTAATTTAT-AGTATG-ATATATTTATGT-A-TTATGTAAGTTATGTAAGT
1 TTTATGTAAGTTATGTAAGTTATGA-TATGAATATATTTATGTAAGTTATGTAAATTATGTAAGT
*
6965813 TATGATCCACAGTTTTTTTTTATTCTTTAAATG
65 TATGATCCAAAG---TTTTTT-TT-TTTAAATG
6965846 TTTATGTAAGTTATGTAAGTTATGATATGATATATATTTATGTAAGTTATGTAAATTATGTAAGT
1 TTTATGTAAGTTATGTAAGTTATGATATGA-ATATATTTATGTAAGTTATGTAAATTATGTAAGT
6965911 TATGATCCAAAGTTTTTTTTTTTAAATG
65 TATGATCCAAAGTTTTTTTTTTTAAATG
6965939 TTTATGTAAGTT
1 TTTATGTAAGTT
6965951 GTGATTATCA
Statistics
Matches: 97, Mismatches: 3, Indels: 11
0.87 0.03 0.10
Matches are distributed among these distances:
93 20 0.21
94 28 0.29
95 7 0.07
96 12 0.12
97 1 0.01
98 29 0.30
ACGTcount: A:0.31, C:0.03, G:0.15, T:0.51
Consensus pattern (92 bp):
TTTATGTAAGTTATGTAAGTTATGATATGAATATATTTATGTAAGTTATGTAAATTATGTAAGTT
ATGATCCAAAGTTTTTTTTTTTAAATG
Found at i:6965860 original size:137 final size:129
Alignment explanation
Indices: 6965589--6965905 Score: 330
Period size: 137 Copynumber: 2.4 Consensus size: 129
6965579 ATCCAAAGTT
*
6965589 TTATGTAAGTTATGATATGATATATATTTATGTAAGTTATGTAAGTTATGATATGATATATTTTT
1 TTATGTAAGTTATGATATGATATATATTTATGTAAGTTATGTAAATTATGATATGATATA-TTTT
6965654 ATGTATTACGTAAGTTATGATATGATATCTATTTATGTAAGTTATGTAATTTATGATATGTATAT
65 ATGTATTACGTAAGTTATGATATGATATCTATTTATGTAAGTTATGTAATTTATGATATGT-TA-
6965719 TTATG
128 --A-G
*
6965724 TATTATGTAAGTTATGATATGATATATATTTATGTAAGTTATGTAATTTAT-AGTATGATATA-T
1 --TTATGTAAGTTATGATATGATATATATTTATGTAAGTTATGTAAATTATGA-TATGATATATT
* ** *
6965787 TTATGTATTATGTAAGTTATGTAAGTTATGATCCA-C-AGTTT-T-T-TTTTAT-T-CTTTAAAT
63 TTATGTATTACGTAAGTTATG--A--TATGAT--ATCTA-TTTATGTAAGTTATGTAATTT--AT
*
6965845 GTTTATG-TAAG
119 G-ATATGTTAAG
6965856 TTATGTAAGTTATGATATGATATATATTTATGTAAGTTATGTAAATTATG
1 TTATGTAAGTTATGATATGATATATATTTATGTAAGTTATGTAAATTATG
6965906 TAAGTTATGA
Statistics
Matches: 161, Mismatches: 7, Indels: 30
0.81 0.04 0.15
Matches are distributed among these distances:
130 48 0.30
132 1 0.01
133 1 0.01
135 24 0.15
136 4 0.02
137 65 0.40
138 5 0.03
139 8 0.05
140 4 0.02
141 1 0.01
ACGTcount: A:0.33, C:0.02, G:0.15, T:0.50
Consensus pattern (129 bp):
TTATGTAAGTTATGATATGATATATATTTATGTAAGTTATGTAAATTATGATATGATATATTTTA
TGTATTACGTAAGTTATGATATGATATCTATTTATGTAAGTTATGTAATTTATGATATGTTAAG
Found at i:6965861 original size:9 final size:9
Alignment explanation
Indices: 6965847--6965914 Score: 75
Period size: 9 Copynumber: 7.6 Consensus size: 9
6965837 CTTTAAATGT
6965847 TTATGTAAG
1 TTATGTAAG
6965856 TTATGTAAG
1 TTATGTAAG
*
6965865 TTATGATATG
1 TTATG-TAAG
* * *
6965875 ATATAT-AT
1 TTATGTAAG
6965883 TTATGTAAG
1 TTATGTAAG
*
6965892 TTATGTAAA
1 TTATGTAAG
6965901 TTATGTAAG
1 TTATGTAAG
6965910 TTATG
1 TTATG
6965915 ATCCAAAGTT
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
8 4 0.09
9 37 0.79
10 6 0.13
ACGTcount: A:0.35, C:0.00, G:0.18, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:6966762 original size:13 final size:13
Alignment explanation
Indices: 6966744--6966789 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
6966734 GATTTGTTAT
6966744 TTCTTTTGTTTAC
1 TTCTTTTGTTTAC
** * *
6966757 TTCTTTTCATAAT
1 TTCTTTTGTTTAC
6966770 TTCTTTTGTTTAC
1 TTCTTTTGTTTAC
6966783 TTCTTTT
1 TTCTTTT
6966790 CATTTTGTTT
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.11, C:0.15, G:0.04, T:0.70
Consensus pattern (13 bp):
TTCTTTTGTTTAC
Found at i:6966778 original size:26 final size:26
Alignment explanation
Indices: 6966742--6966792 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
6966732 AAGATTTGTT
6966742 ATTTCTTTTGTTTACTTCTTTTCATA
1 ATTTCTTTTGTTTACTTCTTTTCATA
6966768 ATTTCTTTTGTTTACTTCTTTTCAT
1 ATTTCTTTTGTTTACTTCTTTTCAT
6966793 TTTGTTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.14, C:0.16, G:0.04, T:0.67
Consensus pattern (26 bp):
ATTTCTTTTGTTTACTTCTTTTCATA
Found at i:6967148 original size:71 final size:71
Alignment explanation
Indices: 6966855--6967213 Score: 210
Period size: 72 Copynumber: 5.1 Consensus size: 71
6966845 AAACTATTTT
* * * * * * * * * *
6966855 ACTTAATATCAAAACTCAATAAATCAAATTAATTTAATCTTCTCAAAACATATAACTTGAATAAA
1 ACTTAATATCGAAATTCAATAAATCGAACTAAATTAAGCTTCTAAAAATACATAAC-TAAATAAA
*
6966920 CGGTTTT
65 CGGTTTC
* * * * * *
6966927 ACTTAATATCGAAACTCAATGAATCGAACTAAAAT-AGACTTTTAAAAAATACATAATTGAATAA
1 ACTTAATATCGAAATTCAATAAATCGAACTAAATTAAG-CTTCT-AAAAATACATAACTAAATAA
*
6966991 ATGG-TTC
64 ACGGTTTC
* * ** * * * * * *
6966998 TACTTAATATCGGAATTCAATAAATTGAACT-AATT--TTTTTTTAAAATGCATAATTAAACAAG
1 -ACTTAATATCGAAATTCAATAAATCGAACTAAATTAAGCTTCTAAAAATACATAACTAAATAAA
* *
6967060 TGGTTTT
65 CGGTTTC
** * * **
6967067 ACTTTGTATC-AAATTTCAATAAATCAAACTAAATTAAGCTTCTGAAAATGTATAACTAAATAAA
1 ACTTAATATCGAAA-TTCAATAAATCGAACTAAATTAAGCTTCTAAAAATACATAACTAAATAAA
6967131 CGGTTTC
65 CGGTTTC
* * * * * *
6967138 ACTTAATATCAAAACTT-AATAAATTGAACTAAATTAACCTTATTAAAAACACATAATTAAATAA
1 ACTTAATATCGAAA-TTCAATAAATCGAACTAAATTAAGCTT-CTAAAAATACATAACTAAATAA
* *
6967202 ACGATTTT
64 ACGGTTTC
6967210 ACTT
1 ACTT
6967214 TATAATTAAT
Statistics
Matches: 221, Mismatches: 56, Indels: 20
0.74 0.19 0.07
Matches are distributed among these distances:
67 2 0.01
68 41 0.19
69 10 0.05
71 59 0.27
72 100 0.45
73 9 0.04
ACGTcount: A:0.45, C:0.13, G:0.07, T:0.35
Consensus pattern (71 bp):
ACTTAATATCGAAATTCAATAAATCGAACTAAATTAAGCTTCTAAAAATACATAACTAAATAAAC
GGTTTC
Found at i:6968707 original size:103 final size:106
Alignment explanation
Indices: 6968587--6968855 Score: 382
Period size: 109 Copynumber: 2.5 Consensus size: 106
6968577 GAATAACAAG
* *
6968587 GGGGTTGCTCAGTGCTGATTCCCCCAAGGGGTTGCTTAGTGCTGATT-C-C-CCGACTCTTTGGT
1 GGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCACTCCGACTCTTTGGT
*
6968649 GGTTGCTAAGTGTTGATTCCACCATATCCTTGAATGTGAAA
66 GGTTGCTAAGTGCTGATTCCACCATATCCTTGAATGTGAAA
6968690 GGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGACTCCGACTCTTT
1 GGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATT--CC-ACTCCGACTCTTT
6968755 GGTGGTTGCTAAGTGCTGATTCCACCATATCCTTGAATGTGAAA
63 GGTGGTTGCTAAGTGCTGATTCCACCATATCCTTGAATGTGAAA
* * *
6968799 GGGGTTGCTAAGTGTTGATTTCCCGAATCACTGGTGGTTGCTAAGTGCTGATTCCAC
1 GGGGTTGCTAAGTGCTGA-TTCCC---CCA-AGG-GGTTGCTAAGTGCTGATTCCAC
6968856 CATATCCTTG
Statistics
Matches: 148, Mismatches: 6, Indels: 15
0.88 0.04 0.09
Matches are distributed among these distances:
103 45 0.30
106 1 0.01
108 1 0.01
109 70 0.47
110 5 0.03
112 2 0.01
113 4 0.03
114 2 0.01
115 18 0.12
ACGTcount: A:0.18, C:0.22, G:0.28, T:0.32
Consensus pattern (106 bp):
GGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCACTCCGACTCTTTGGT
GGTTGCTAAGTGCTGATTCCACCATATCCTTGAATGTGAAA
Found at i:6968726 original size:27 final size:27
Alignment explanation
Indices: 6968688--6968740 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
6968678 TTGAATGTGA
6968688 AAGGGGTTGCTAAGTGCTGATTCCCCC
1 AAGGGGTTGCTAAGTGCTGATTCCCCC
6968715 AAGGGGTTGCTAAGTGCTGATTCCCC
1 AAGGGGTTGCTAAGTGCTGATTCCCC
6968741 GACTCCGACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (27 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCC
Found at i:6968855 original size:76 final size:77
Alignment explanation
Indices: 6968715--6968933 Score: 323
Period size: 77 Copynumber: 2.8 Consensus size: 77
6968705 TGATTCCCCC
*
6968715 AAGGGGTTGCTAAGTGCTGATTCCCCGACTCCGACTCTTTGGTGGTTGCTAAGTGCTGATTCCAC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAAT-C-A--C--TGGTGGTTGCTAAGTGCTGATTCCAC
*
6968780 CATATCCTTGAATGT-GA
60 CATATCCTTGAATGTAAA
* *
6968797 AAGGGGTTGCTAAGTGTTGATTTCCCGAATCACTGGTGGTTGCTAAGTGCTGATTCCACCATATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGATTCCACCATATC
6968862 CTTGAATGTAAA
66 CTTGAATGTAAA
* *
6968874 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCACTGGTGGTTGTTAAGTGCTGAATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGATTCCACC
6968934 GATAACGGTT
Statistics
Matches: 128, Mismatches: 8, Indels: 7
0.90 0.06 0.05
Matches are distributed among these distances:
76 41 0.32
77 57 0.45
78 1 0.01
80 1 0.01
81 1 0.01
82 27 0.21
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (77 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGATTCCACCATATC
CTTGAATGTAAA
Found at i:6971058 original size:13 final size:13
Alignment explanation
Indices: 6971040--6971080 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
6971030 CCAATTTTCC
6971040 CTTTTCTTTCTTT
1 CTTTTCTTTCTTT
6971053 CTTTTCTTTCTTT
1 CTTTTCTTTCTTT
*
6971066 CCTTTT-TTTCCTT
1 -CTTTTCTTTCTTT
6971079 CT
1 CT
6971081 CTGTTTCGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 2 0.08
13 19 0.73
14 5 0.19
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (13 bp):
CTTTTCTTTCTTT
Found at i:6974381 original size:39 final size:39
Alignment explanation
Indices: 6974338--6974415 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 39
6974328 TGTGAGGCCG
* *
6974338 TGTGGGTCACACGGGCT-ATGCCAATTTAGGCGTGTGGGC
1 TGTGGGCCACACGGG-TAAGGCCAATTTAGGCGTGTGGGC
*
6974377 TGTGGGCCACACGGGTAAGGCCAATTTGGGCGTGTGGGC
1 TGTGGGCCACACGGGTAAGGCCAATTTAGGCGTGTGGGC
6974416 CTAAATTTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
38 1 0.03
39 34 0.97
ACGTcount: A:0.15, C:0.21, G:0.41, T:0.23
Consensus pattern (39 bp):
TGTGGGCCACACGGGTAAGGCCAATTTAGGCGTGTGGGC
Found at i:6977365 original size:30 final size:30
Alignment explanation
Indices: 6977331--6977390 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
6977321 TGTTCATTAG
*
6977331 CCTACTCGTTATATAGATCTAAATATTTGT
1 CCTACTCATTATATAGATCTAAATATTTGT
* *
6977361 CCTACTCATTATATGGATCTCAATATTTGT
1 CCTACTCATTATATAGATCTAAATATTTGT
6977391 TCTAATGTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.18, G:0.10, T:0.43
Consensus pattern (30 bp):
CCTACTCATTATATAGATCTAAATATTTGT
Found at i:6978250 original size:13 final size:13
Alignment explanation
Indices: 6978232--6978261 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
6978222 TAAAATCTCC
6978232 GGAAATGTTTTAT
1 GGAAATGTTTTAT
6978245 GGAAATGTTTTAT
1 GGAAATGTTTTAT
6978258 GGAA
1 GGAA
6978262 TATTAGCTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.27, T:0.40
Consensus pattern (13 bp):
GGAAATGTTTTAT
Found at i:6982644 original size:21 final size:21
Alignment explanation
Indices: 6982619--6982662 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
6982609 AACTGATATT
6982619 AACGTTGACATGAATTAATTA
1 AACGTTGACATGAATTAATTA
6982640 AACGTTGACATGAATTAATTA
1 AACGTTGACATGAATTAATTA
6982661 AA
1 AA
6982663 TTATCTCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.45, C:0.09, G:0.14, T:0.32
Consensus pattern (21 bp):
AACGTTGACATGAATTAATTA
Found at i:6990450 original size:40 final size:41
Alignment explanation
Indices: 6990400--6990933 Score: 588
Period size: 40 Copynumber: 12.8 Consensus size: 41
6990390 GGTTTCTTTC
6990400 ATCTGCTCCACTACTGCTTAGGGAGATAAGA-CTTGATGTG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTGATGTG
* ** *
6990440 ATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGGTTTCTTTCG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATC---TTGATGT-G
6990485 -TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTTGATGTG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTGATGTG
** *
6990524 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTTTTTTTTG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATC------TTGATGTG
* *
6990571 -TCTGCTCCACTACTGCTTAGAGAGATAAGA-CTTGATGCG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTGATGTG
** *
6990610 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATC---TTGATGT-G
*
6990655 -TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTTGATGTA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTGATGTG
* *
6990694 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-T-GATGTG
*
6990737 -TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTTGATGCG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTGATGTG
** * * *
6990776 ATCTATTTCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-T-GATGTG
* *
6990819 -TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-T-GATGTG
*
6990861 -TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTTGATGCG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTGATGTG
6990900 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
6990934 GTGGTTCTGT
Statistics
Matches: 422, Mismatches: 43, Indels: 57
0.81 0.08 0.11
Matches are distributed among these distances:
39 11 0.03
40 186 0.44
41 13 0.03
42 101 0.24
43 8 0.02
44 66 0.16
45 3 0.01
46 29 0.07
47 5 0.01
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (41 bp):
ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTGATGTG
Found at i:6990501 original size:84 final size:84
Alignment explanation
Indices: 6990374--6990930 Score: 780
Period size: 84 Copynumber: 6.7 Consensus size: 84
6990364 CATTGCAACT
* *
6990374 TTAGGGAGATAGGAT-TGGTTTCTTTCATCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATG
1 TTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATG
*
6990438 TGATCTGCTCCACTATTGC
66 TGATCTGCTCCACTACTGC
6990457 TTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATG
1 TTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATG
6990522 TGATCTGCTCCACTACTGC
66 TGATCTGCTCCACTACTGC
* * *
6990541 TTAGGGAGATAAGATCTGGTTTTTTTTTTGTCTGCTCCACTACTGCTTAGAGAGATAAGACTTGA
1 TTAGGGAGATAAGATCTGG--TTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGA
*
6990606 TGCGATCTGCTCCACTACTGC
64 TGTGATCTGCTCCACTACTGC
6990627 TTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATG
1 TTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATG
*
6990692 TAATCTGCTCCACTACTGC
66 TGATCTGCTCCACTACTGC
*
6990711 TTAGGGAGATAAGATCTGTGGTTC--T-GTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGAT
1 TTAGGGAGATAAGATCTG-GTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGAT
* ** *
6990773 GCGATCTATTTCACTACTGC
65 GTGATCTGCTCCACTACTGC
*
6990793 TTAGGGAGATAAGATCTGTGGTTC--T-GTCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTG
1 TTAGGGAGATAAGATCTG-GTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-T-
* *
6990855 GTTCTG-TCTGCTCCACTACTGC
62 GATGTGATCTGCTCCACTACTGC
** *
6990877 TTAGGGAGATAAGA-C----TTGATGCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 TTAGGGAGATAAGATCTGGTTTCTTTCG-TCTGCTCCACTACTGCTTAGGGAGATAAGA
6990931 TCTGTGGTTC
Statistics
Matches: 437, Mismatches: 26, Indels: 23
0.90 0.05 0.05
Matches are distributed among these distances:
78 2 0.00
81 1 0.00
82 138 0.32
83 18 0.04
84 191 0.44
85 7 0.02
86 80 0.18
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.33
Consensus pattern (84 bp):
TTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATG
TGATCTGCTCCACTACTGC
Found at i:6990598 original size:170 final size:166
Alignment explanation
Indices: 6990401--6990930 Score: 795
Period size: 170 Copynumber: 3.2 Consensus size: 166
6990391 GTTTCTTTCA
* *
6990401 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATCTGCTCCACTATTGCTTAGGGAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGA
6990466 TAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATCTGCT
66 TAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATCTGCT
** *
6990531 CCACTACTGCTTAGGGAGATAAGATCTGGTTTTTTTTTTG
131 CCACTACTGCTTAGGGAGATAAGATCT-G---TGGTTCTG
*
6990571 TCTGCTCCACTACTGCTTAGAGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGA
*
6990636 TAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTAATCTGCT
66 TAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATCTGCT
6990701 CCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTG
131 CCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTG
** *
6990737 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTATTTCACTACTGCTTAGGGAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGA
* * *
6990802 TAAGATCTGTGGTTC--T-GTCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTG-TC
66 TAAGATCTG-GTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-T-GATGTGATC
* *
6990863 TGCTCCACTACTGCTTAGGGAGATAAGA-CT-TGATGC-G
127 TGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTG
6990900 ATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 -TCTGCTCCACTACTGCTTAGGGAGATAAGA
6990931 TCTGTGGTTC
Statistics
Matches: 338, Mismatches: 17, Indels: 16
0.91 0.05 0.04
Matches are distributed among these distances:
163 1 0.00
164 65 0.19
165 5 0.01
166 106 0.31
167 7 0.02
169 1 0.00
170 153 0.45
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (166 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGA
TAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATCTGCT
CCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTG
Found at i:6990934 original size:124 final size:124
Alignment explanation
Indices: 6990400--6990943 Score: 696
Period size: 124 Copynumber: 4.4 Consensus size: 124
6990390 GGTTTCTTTC
* * *
6990400 ATCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-T-GATGTGATCTGCTCCACTATTGCTTAGG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTG-TCTGCTCCACTACTGCTTAGG
* *
6990462 GAGATAAGATCTG-GTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTG
65 GAGATAAGATCTGTGGTTC--T-GTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCG
** *
6990524 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTTTTTTTTGTCTGCTCCACTACTGCTT
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-G---TGGTTCTGTCTGCTCCACTACTGCTT
* * * **
6990589 AGAGAGATAAGA-CT-TGATGC-GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCT
62 AGGGAGATAAGATCTGTGGTTCTG-TCTGCTCCACTACTGCTTAGGGAGATAAGA-C----TTGA
*
6990651 TTCG
121 TGCG
* **
6990655 -TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-TGATGT-AATCTGCTCCACTACTGCTTAGG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGT-TCTGTCTGCTCCACTACTGCTTAGG
6990716 GAGATAAGATCTGTGGTTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCG
65 GAGATAAGATCTGTGGTTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCG
** *
6990776 ATCTATTTCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTGTCTGCTCCACTACTGCTTAGGG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTGTCTGCTCCACTACTGCTTAGGG
6990841 AGATAAGATCTGTGGTTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCG
66 AGATAAGATCTGTGGTTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCG
6990900 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTGT
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTGT
6990944 TCTCTGGGGA
Statistics
Matches: 368, Mismatches: 30, Indels: 44
0.83 0.07 0.10
Matches are distributed among these distances:
121 5 0.01
122 27 0.07
123 3 0.01
124 187 0.51
125 7 0.02
126 64 0.17
127 2 0.01
129 7 0.02
130 59 0.16
131 7 0.02
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (124 bp):
ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTGTCTGCTCCACTACTGCTTAGGG
AGATAAGATCTGTGGTTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCG
Found at i:7003917 original size:16 final size:16
Alignment explanation
Indices: 7003896--7003930 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7003886 CAATTTGTAG
7003896 AAAAGAAAAAAAAATA
1 AAAAGAAAAAAAAATA
**
7003912 AAAAGAAAAGTAAATA
1 AAAAGAAAAAAAAATA
7003928 AAA
1 AAA
7003931 TAGATAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.83, C:0.00, G:0.09, T:0.09
Consensus pattern (16 bp):
AAAAGAAAAAAAAATA
Found at i:7007569 original size:33 final size:34
Alignment explanation
Indices: 7007490--7007569 Score: 87
Period size: 33 Copynumber: 2.4 Consensus size: 34
7007480 TAAAACTAAC
7007490 GATACATAAAATATTTTAAAAACTTTAAATATAAT
1 GATACATAAAATA-TTTAAAAACTTTAAATATAAT
* * *
7007525 -A-ACA-AATAATATTTAAATAGTTT-TATATAAT
1 GATACATAA-AATATTTAAAAACTTTAAATATAAT
7007556 GATACATAAAATAT
1 GATACATAAAATAT
7007570 AAACTAATCT
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
31 7 0.18
32 13 0.34
33 15 0.39
34 3 0.08
ACGTcount: A:0.54, C:0.05, G:0.04, T:0.38
Consensus pattern (34 bp):
GATACATAAAATATTTAAAAACTTTAAATATAAT
Found at i:7014243 original size:18 final size:18
Alignment explanation
Indices: 7014211--7014245 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7014201 TTTTTATAAG
*
7014211 TATTTTTTTCGAATTTTA
1 TATTTTTTTAGAATTTTA
*
7014229 TATTTTTTTATAATTTT
1 TATTTTTTTAGAATTTT
7014246 CTTACGACTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.71
Consensus pattern (18 bp):
TATTTTTTTAGAATTTTA
Found at i:7014306 original size:10 final size:10
Alignment explanation
Indices: 7014293--7014353 Score: 51
Period size: 9 Copynumber: 6.4 Consensus size: 10
7014283 TTTCTATATA
7014293 TTTTACAATT
1 TTTTACAATT
7014303 TTTTA-AGATT
1 TTTTACA-ATT
*
7014313 TTTATA-AA-A
1 TTT-TACAATT
7014322 TTTTACAA-T
1 TTTTACAATT
*
7014331 TTTTATAATT
1 TTTTACAATT
7014341 TTTTAC-ATT
1 TTTTACAATT
7014350 TTTT
1 TTTT
7014354 TCTAATTTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
8 2 0.05
9 20 0.47
10 18 0.42
11 3 0.07
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (10 bp):
TTTTACAATT
Found at i:7014315 original size:19 final size:19
Alignment explanation
Indices: 7014293--7014382 Score: 71
Period size: 19 Copynumber: 4.8 Consensus size: 19
7014283 TTTCTATATA
*
7014293 TTTTACAATTTTTTA-AGAT
1 TTTTATAATTTTTTACA-AT
**
7014312 TTTTATAAAATTTTACAAT
1 TTTTATAATTTTTTACAAT
*
7014331 TTTTATAATTTTTTACATTT
1 TTTTATAATTTTTTACA-AT
* *
7014351 TTTTCTAA--TTTTAAATAT
1 TTTTATAATTTTTTACA-AT
7014369 TTTTAT-ATTTTTTA
1 TTTTATAATTTTTTA
7014383 TTAAAATTTA
Statistics
Matches: 57, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
17 1 0.02
18 13 0.23
19 34 0.60
20 9 0.16
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.63
Consensus pattern (19 bp):
TTTTATAATTTTTTACAAT
Found at i:7020484 original size:15 final size:15
Alignment explanation
Indices: 7020464--7020494 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
7020454 CCAACCTTCA
7020464 AATTTTACCTCAATT
1 AATTTTACCTCAATT
7020479 AATTTTACCTCAATT
1 AATTTTACCTCAATT
7020494 A
1 A
7020495 TACATAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.45
Consensus pattern (15 bp):
AATTTTACCTCAATT
Found at i:7022540 original size:11 final size:11
Alignment explanation
Indices: 7022524--7022550 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
7022514 TAGAAATTAG
7022524 TTTGTGAAACT
1 TTTGTGAAACT
7022535 TTTGTGAAACT
1 TTTGTGAAACT
7022546 TTTGT
1 TTTGT
7022551 ATTGATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:7024077 original size:93 final size:92
Alignment explanation
Indices: 7023945--7024139 Score: 286
Period size: 93 Copynumber: 2.1 Consensus size: 92
7023935 TTGATTTTAG
* *
7023945 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTA-TATAATTA
1 TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTA-AATTA
* *
7024009 TATTTAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* *
7024037 TAAATTCATATAAGAAAATTTTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTA
1 TAAATTCATATAAGAAAA-TTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTA
7024102 TATGTAATAATTATTATTTTAAATTATA
65 TATGTAATAATTATTATTTTAAATTATA
*
7024130 CAAATTCATA
1 TAAATTCATA
7024140 AACTATAATC
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
92 17 0.18
93 71 0.76
94 5 0.05
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:7024197 original size:17 final size:17
Alignment explanation
Indices: 7024172--7024205 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7024162 ATAATTTTAA
*
7024172 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
7024189 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
7024206 TTAATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:7024207 original size:15 final size:16
Alignment explanation
Indices: 7024172--7024210 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
7024162 ATAATTTTAA
*
7024172 ATTTTATTAAATCATAT
1 ATTTAATTAAATCA-AT
7024189 ATTTAATTAAATC-AT
1 ATTTAATTAAATCAAT
7024204 ATTTAAT
1 ATTTAAT
7024211 ATTAATTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.43
17 12 0.57
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (16 bp):
ATTTAATTAAATCAAT
Found at i:7024214 original size:17 final size:18
Alignment explanation
Indices: 7024176--7024215 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
7024166 TTTTAAATTT
*
7024176 TATTAAATCATATATTTA
1 TATTAAATCATATATTAA
7024194 -ATTAAATCATAT-TTAA
1 TATTAAATCATATATTAA
7024210 TATTAA
1 TATTAA
7024216 TTATTTGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (18 bp):
TATTAAATCATATATTAA
Found at i:7024330 original size:15 final size:15
Alignment explanation
Indices: 7024295--7024429 Score: 70
Period size: 15 Copynumber: 8.9 Consensus size: 15
7024285 TTAAGAATTT
*
7024295 TATTAAATTAT-ATA
1 TATTTAATTATAATA
7024309 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
7024323 TATTTAATAATAAT-
1 TATTTAATTATAATA
7024337 TATGTTAATT-T-ATA
1 TAT-TTAATTATAATA
* *
7024351 T-TTTACAGTATCATA
1 TATTTA-ATTATAATA
*
7024366 TATTATGATTTGAGTAAATTCA
1 TATT-T-AATT-A-T-AA-T-A
*
7024388 TATTAAATTAT-ATA
1 TATTTAATTATAATA
7024402 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
7024416 TATTTAATAATAAT
1 TATTTAATTATAAT
7024430 TATGTTTAAA
Statistics
Matches: 93, Mismatches: 11, Indels: 33
0.68 0.08 0.24
Matches are distributed among these distances:
12 3 0.03
13 21 0.23
14 17 0.18
15 32 0.34
16 3 0.03
17 2 0.02
18 3 0.03
19 2 0.02
20 4 0.04
21 1 0.01
22 5 0.05
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:7024337 original size:120 final size:119
Alignment explanation
Indices: 7024171--7024389 Score: 345
Period size: 120 Copynumber: 1.8 Consensus size: 119
7024161 AATAATTTTA
* *
7024171 AATTTTATTAAATCATATATTTAATTAAATCATATTTAATATTAATTAT-TTGAAATTT-TCTTT
1 AATTTTATTAAATCATATATTTAATTAAATCATATTTAATAATAATTATGTT--AATTTATATTT
*
7024234 TATAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATTTTATTTATTAAG
64 TACAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATTTTATTTATTAAG
*
7024290 AATTTTATTAAATTATATATTTTAATTATAAT-ATATTTAATAATAATTATGTTAATTTATATTT
1 AATTTTATTAAATCATATA-TTTAATTA-AATCATATTTAATAATAATTATGTTAATTTATATTT
7024354 TACAGTATCATATATTATGATTTGAGTAAATTCATA
64 TACAGTATCATATATTATGATTTGAGTAAATTCATA
7024390 TTAAATTATA
Statistics
Matches: 92, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
119 23 0.25
120 64 0.70
121 5 0.05
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.50
Consensus pattern (119 bp):
AATTTTATTAAATCATATATTTAATTAAATCATATTTAATAATAATTATGTTAATTTATATTTTA
CAGTATCATATATTATGATTTGAGTAAATTCATAGAAGAATTTTATTTATTAAG
Found at i:7024418 original size:16 final size:16
Alignment explanation
Indices: 7024397--7024438 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
7024387 ATATTAAATT
*
7024397 ATATATTTTAATTATA
1 ATATATTTTAATAATA
7024413 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
7024428 AT-TATGTTTAA
1 ATATAT-TTTAA
7024439 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:7024546 original size:154 final size:156
Alignment explanation
Indices: 7024388--7024685 Score: 546
Period size: 154 Copynumber: 1.9 Consensus size: 156
7024378 AGTAAATTCA
*
7024388 TATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
1 TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
7024453 TTTATTATTGAT-AT-TAATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAAC
66 TTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAAC
7024516 AAATTTATGCTAATTATTAAGAATTT
131 AAATTTATGCTAATTATTAAGAATTT
7024542 TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
1 TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
*
7024607 TTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAATAATCATTTACCAAAA
66 TTTATTATTGATAAT-ATAATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAA
*
7024672 CAAATTTCTGCTAA
130 CAAATTTATGCTAA
7024686 GGGTATTCTA
Statistics
Matches: 138, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
154 76 0.55
155 2 0.01
157 60 0.43
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.44
Consensus pattern (156 bp):
TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
TTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAAC
AAATTTATGCTAATTATTAAGAATTT
Found at i:7024566 original size:18 final size:17
Alignment explanation
Indices: 7024538--7024572 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7024528 ATTATTAAGA
*
7024538 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
7024555 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
7024573 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:7024826 original size:16 final size:16
Alignment explanation
Indices: 7024805--7024843 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7024795 TTGATTTGCT
*
7024805 ATTACACAGCTTTTCC
1 ATTACACAGCTATTCC
**
7024821 ATTACACCTCTATTCC
1 ATTACACAGCTATTCC
7024837 ATTACAC
1 ATTACAC
7024844 CTCTAATCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.33, G:0.03, T:0.36
Consensus pattern (16 bp):
ATTACACAGCTATTCC
Found at i:7024844 original size:16 final size:16
Alignment explanation
Indices: 7024818--7024874 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
7024808 ACACAGCTTT
* *
7024818 TCCATTACACCTCTAT
1 TCCAATACACCTCTAA
*
7024834 TCCATTACACCTCTAA
1 TCCAATACACCTCTAA
7024850 TCCAATACACCTCTAA
1 TCCAATACACCTCTAA
7024866 TCCAATACA
1 TCCAATACA
7024875 GCGAACCAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.33, C:0.37, G:0.00, T:0.30
Consensus pattern (16 bp):
TCCAATACACCTCTAA
Found at i:7027490 original size:20 final size:22
Alignment explanation
Indices: 7027453--7027493 Score: 59
Period size: 20 Copynumber: 1.9 Consensus size: 22
7027443 CCAGCCCATT
7027453 TTTTAATAAATATTAAAAAATTA
1 TTTTAATAAATA-TAAAAAATTA
7027476 TTTTAA-AAATA-AAAAAAT
1 TTTTAATAAATATAAAAAAT
7027494 AAAAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
22 5 0.28
23 6 0.33
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (22 bp):
TTTTAATAAATATAAAAAATTA
Found at i:7027514 original size:10 final size:10
Alignment explanation
Indices: 7027496--7027520 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7027486 AAAAAAATAA
7027496 AAAATATTTT
1 AAAATATTTT
7027506 AAAATATTTT
1 AAAATATTTT
7027516 AAAAT
1 AAAAT
7027521 TAAAAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (10 bp):
AAAATATTTT
Found at i:7027519 original size:27 final size:27
Alignment explanation
Indices: 7027464--7027529 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
7027454 TTTAATAAAT
7027464 ATTAAAAAATTATTTTAAAAATAAAAAA
1 ATTAAAAAA-TATTTTAAAAATAAAAAA
***
7027492 A-TAAAAAATATTTTAAAATATTTTAAA
1 ATTAAAAAATATTTTAAAA-ATAAAAAA
7027519 ATTAAAAAATA
1 ATTAAAAAATA
7027530 AAAATAAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 10 0.30
27 13 0.39
28 10 0.30
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (27 bp):
ATTAAAAAATATTTTAAAAATAAAAAA
Found at i:7027527 original size:35 final size:37
Alignment explanation
Indices: 7027460--7027533 Score: 107
Period size: 35 Copynumber: 2.1 Consensus size: 37
7027450 ATTTTTTAAT
7027460 AAATATTAAAAAATTATTTTAAAAATAAAAAAATAAA
1 AAATATTAAAAAATTATTTTAAAAATAAAAAAATAAA
** *
7027497 AAATATTTTAAAA-TATTTT-AAAATTAAAAAATAAA
1 AAATATTAAAAAATTATTTTAAAAATAAAAAAATAAA
7027532 AA
1 AA
7027534 TAAAAAATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
35 17 0.50
36 6 0.18
37 11 0.32
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (37 bp):
AAATATTAAAAAATTATTTTAAAAATAAAAAAATAAA
Found at i:7030405 original size:21 final size:21
Alignment explanation
Indices: 7030380--7030419 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
7030370 TTTTCGTTTT
7030380 AGAAAACCATAATCATTTCGG
1 AGAAAACCATAATCATTTCGG
7030401 AGAAAACCATAATCATTTC
1 AGAAAACCATAATCATTTC
7030420 CAAATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.45, C:0.20, G:0.10, T:0.25
Consensus pattern (21 bp):
AGAAAACCATAATCATTTCGG
Found at i:7030461 original size:58 final size:58
Alignment explanation
Indices: 7030392--7030504 Score: 183
Period size: 58 Copynumber: 1.9 Consensus size: 58
7030382 AAAACCATAA
*
7030392 TCATTTCGGAGAAAACCATAATCATTTCCAAATGTTTAC-CATTTCTCCATTTTCATTT
1 TCATTTCGGAGAAAAACATAATCATTTCCAAAT-TTTACTCATTTCTCCATTTTCATTT
* *
7030450 TCATTTTGGAGAAAAACATAATCATTTCCAAATTTTTCTCATTTCTCCATTTTCA
1 TCATTTCGGAGAAAAACATAATCATTTCCAAATTTTACTCATTTCTCCATTTTCA
7030505 CAATTTCTAT
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
57 4 0.08
58 47 0.92
ACGTcount: A:0.30, C:0.21, G:0.06, T:0.42
Consensus pattern (58 bp):
TCATTTCGGAGAAAAACATAATCATTTCCAAATTTTACTCATTTCTCCATTTTCATTT
Found at i:7032469 original size:24 final size:24
Alignment explanation
Indices: 7032429--7032475 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
7032419 AAAGGGAAAT
*
7032429 AAGAGAAAGTGATGGAAAATGTTG
1 AAGAGAAAGTGAAGGAAAATGTTG
*
7032453 AAGAGAAAG-GAAAGGAAAGTGTT
1 AAGAGAAAGTG-AAGGAAAATGTT
7032476 ATAAATTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.49, C:0.00, G:0.34, T:0.17
Consensus pattern (24 bp):
AAGAGAAAGTGAAGGAAAATGTTG
Found at i:7038251 original size:20 final size:19
Alignment explanation
Indices: 7038185--7038248 Score: 73
Period size: 17 Copynumber: 3.5 Consensus size: 19
7038175 ATATTAAACC
*
7038185 TATTAAATTATAGA-AT-A
1 TATTAAATTATAGATTTAA
7038202 TATTAAATT-TA-ATTTAA
1 TATTAAATTATAGATTTAA
*
7038219 TATTAAGATAATAGATTTAA
1 TATTAA-ATTATAGATTTAA
7038239 TATTAAATTA
1 TATTAAATTA
7038249 ATAAAATATT
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
15 1 0.03
16 3 0.08
17 16 0.41
18 2 0.05
19 5 0.13
20 12 0.31
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (19 bp):
TATTAAATTATAGATTTAA
Found at i:7038256 original size:25 final size:25
Alignment explanation
Indices: 7038208--7038256 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
7038198 AATATATTAA
*
7038208 ATTTAATTTAATATTAAGATAATAG
1 ATTTAATTTAATATTAAGAAAATAG
*
7038233 ATTTAATATTAA-ATTAATAAAATA
1 ATTTAAT-TTAATATTAAGAAAATA
7038257 TTATTAAGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (25 bp):
ATTTAATTTAATATTAAGAAAATAG
Found at i:7046067 original size:57 final size:57
Alignment explanation
Indices: 7045979--7046108 Score: 260
Period size: 57 Copynumber: 2.3 Consensus size: 57
7045969 CTAGCAAATC
7045979 AGAGAATTAAACGCAATGATGAAGGACAAGCATTGGTTTATTCACCGAACAGAATAT
1 AGAGAATTAAACGCAATGATGAAGGACAAGCATTGGTTTATTCACCGAACAGAATAT
7046036 AGAGAATTAAACGCAATGATGAAGGACAAGCATTGGTTTATTCACCGAACAGAATAT
1 AGAGAATTAAACGCAATGATGAAGGACAAGCATTGGTTTATTCACCGAACAGAATAT
7046093 AGAGAATTAAACGCAA
1 AGAGAATTAAACGCAA
7046109 GTGGCATCCA
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 73 1.00
ACGTcount: A:0.44, C:0.14, G:0.21, T:0.22
Consensus pattern (57 bp):
AGAGAATTAAACGCAATGATGAAGGACAAGCATTGGTTTATTCACCGAACAGAATAT
Found at i:7046316 original size:23 final size:20
Alignment explanation
Indices: 7046286--7046330 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
7046276 TTTTTTTTTT
7046286 TAAAAGTTCAACAAAGAATAAA
1 TAAAAGTTC-ACAAA-AATAAA
*
7046308 TAAATAGTTCACCAAAATAAA
1 TAAA-AGTTCACAAAAATAAA
7046329 TA
1 TA
7046331 GAATGAGGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 8 0.38
22 8 0.38
23 5 0.24
ACGTcount: A:0.60, C:0.11, G:0.07, T:0.22
Consensus pattern (20 bp):
TAAAAGTTCACAAAAATAAA
Found at i:7057829 original size:24 final size:24
Alignment explanation
Indices: 7057802--7057853 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
7057792 TTAGTAAGTC
*
7057802 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
7057826 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
7057850 AAAT
1 AAAT
7057854 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:7059794 original size:24 final size:24
Alignment explanation
Indices: 7059767--7059818 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
7059757 TTAGTAAGTC
*
7059767 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
7059791 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
7059815 AAAT
1 AAAT
7059819 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:7060259 original size:16 final size:16
Alignment explanation
Indices: 7060220--7060274 Score: 53
Period size: 16 Copynumber: 3.5 Consensus size: 16
7060210 TATTAGAGGG
*
7060220 TGAAGAAATGAAATAA
1 TGAATAAATGAAATAA
7060236 TGACATAAAT-AAATAGA
1 TGA-ATAAATGAAATA-A
7060253 TGAATAAA-GAAA-AA
1 TGAATAAATGAAATAA
*
7060267 TAAATAAA
1 TGAATAAA
7060275 AAGATAAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
14 8 0.24
15 1 0.03
16 16 0.47
17 9 0.26
ACGTcount: A:0.65, C:0.02, G:0.13, T:0.20
Consensus pattern (16 bp):
TGAATAAATGAAATAA
Found at i:7060529 original size:65 final size:65
Alignment explanation
Indices: 7060439--7060640 Score: 258
Period size: 65 Copynumber: 3.2 Consensus size: 65
7060429 TGCTTAATGA
* * * *
7060439 AAAAGAAATATAAGTAATATCAAATTTAAATATTTAAAAAGTAAAAGAATAATAAATAAATAGAT
1 AAAACAAATATAAATAATATTAAATTTAAGTATTTAAAAAGTAAAAGAATAATAAATAAATAGAT
* * *
7060504 AAAACAAATATAAATAGTATTAAATTTAAGTATTTAAAAAATAAAAG---AA-CAATAAAT--A-
1 AAAACAAATATAAATAATATTAAATTTAAGTATTTAAAAAGTAAAAGAATAATAAATAAATAGAT
*
7060562 AAAA-AAATATAAATAATATTAAATTTAAGTATTTTAAAAAGTAAAAGAATAATAAACAAATAGA
1 AAAACAAATATAAATAATATTAAATTTAAGTA-TTTAAAAAGTAAAAGAATAATAAATAAATAGA
7060626 T
65 T
*
7060627 AAAACGAATATAAA
1 AAAACAAATATAAA
7060641 AGGATGAAAT
Statistics
Matches: 116, Mismatches: 12, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
57 26 0.22
58 18 0.16
59 1 0.01
61 9 0.08
62 8 0.07
64 1 0.01
65 45 0.39
66 8 0.07
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.27
Consensus pattern (65 bp):
AAAACAAATATAAATAATATTAAATTTAAGTATTTAAAAAGTAAAAGAATAATAAATAAATAGAT
Found at i:7060547 original size:57 final size:57
Alignment explanation
Indices: 7060497--7060617 Score: 188
Period size: 57 Copynumber: 2.1 Consensus size: 57
7060487 ATAATAAATA
* * *
7060497 AATAGATAAAACAAATATAAATAGTATTAAATTTAAGTATTTAAAAAATAAAAGAAC
1 AATAAATAAAAAAAATATAAATAATATTAAATTTAAGTATTTAAAAAATAAAAGAAC
* *
7060554 AATAAATAAAAAAAATATAAATAATATTAAATTTAAGTATTTTAAAAAGTAAAAGAAT
1 AATAAATAAAAAAAATATAAATAATATTAAATTTAAGTA-TTTAAAAAATAAAAGAAC
7060612 AATAAA
1 AATAAA
7060618 CAAATAGATA
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
57 36 0.62
58 22 0.38
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.29
Consensus pattern (57 bp):
AATAAATAAAAAAAATATAAATAATATTAAATTTAAGTATTTAAAAAATAAAAGAAC
Found at i:7062150 original size:44 final size:44
Alignment explanation
Indices: 7062102--7062624 Score: 532
Period size: 44 Copynumber: 11.8 Consensus size: 44
7062092 TTGTTGCTTC
* * * *
7062102 AATCTACTCCACCGCAACTTCAGGGAGATTAGACTTGTAGA-TTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA-ACTTT
** * * *** * *
7062146 AATCTGCTCCACTGCAACTTCAAAGAGATGAGACTCACATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTT
* * * * *
7062190 AATCTACTCTATTGCAACTTCAGGGAGATGAGATTTGTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTT
* *
7062234 AATCTGCTCCACTGTAACTTCAGGGAGATGAGATTTGTAACTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTT
** ** * * *
7062278 AATCTGCTCCACTATAACTTCAATGAGATGAGGTTTGTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTT
* *
7062322 AATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTGTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTT
** * *
7062366 AATCAACTCCACTGCAACTTCAGGAAGATAAGATTTGAAACTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTT
* * * * *
7062410 AATCTGCTCCAGTGCAAGTTCAGGAAGATAAGATTTCTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTT
* * *
7062454 AATATGCTCCACTGCAACTTCAGAGAGATAAGATTTGCT-ATTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAACTTT
7062498 CAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAA-TTT
1 -AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTT
* * * * *
7062542 CAATCTGCTCTACTGTAATTTCAGAGAGATAAGATTTGCT-ATTTT
1 -AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAACTTT
* *
7062587 CAATCTGCTCCACTGCAACTTTAGGGAGATAAAATTTG
1 -AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG
7062625 CCACGATAAC
Statistics
Matches: 403, Mismatches: 70, Indels: 11
0.83 0.14 0.02
Matches are distributed among these distances:
44 330 0.82
45 73 0.18
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTT
Found at i:7065543 original size:41 final size:41
Alignment explanation
Indices: 7065486--7065760 Score: 433
Period size: 41 Copynumber: 6.7 Consensus size: 41
7065476 GGTTTTAAAA
*
7065486 CCTAGTAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
*
7065527 CCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
*
7065568 CCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
*
7065609 CCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* * *
7065650 CCTAGCAGGCTAAGTGCCGGTTATCTAAATCAGGTTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* *
7065691 CCTAGCAGGCTAAGTGTCGGTGATCTGAATCAGGCTTTAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
* *
7065732 CCTAACAGGGCTAAGTGCCAGTGAATCTG
1 CCTAGCA-GGCTAAGTGCCGGTG-ATCTG
7065761 TTTAAATTAA
Statistics
Matches: 218, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
41 200 0.92
42 13 0.06
43 5 0.02
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (41 bp):
CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
Found at i:7068976 original size:25 final size:25
Alignment explanation
Indices: 7068946--7069028 Score: 89
Period size: 27 Copynumber: 3.3 Consensus size: 25
7068936 GTCCTAATAT
7068946 ATGGCTCTTCAGAGCTTCCCGATTA
1 ATGGCTCTTCAGAGCTTCCCGATTA
* **
7068971 AAGGCTCTTTCATGAGCTTCTTGATTA
1 ATGGCTC-TTCA-GAGCTTCCCGATTA
*
7068998 ATGGCTC-TCCGAAGCTTCCCGA-TA
1 ATGGCTCTTCAG-AGCTTCCCGATTA
7069022 ATGGCTC
1 ATGGCTC
7069029 GCTTGAACTT
Statistics
Matches: 48, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
24 10 0.21
25 16 0.33
26 4 0.08
27 18 0.38
ACGTcount: A:0.20, C:0.27, G:0.20, T:0.33
Consensus pattern (25 bp):
ATGGCTCTTCAGAGCTTCCCGATTA
Found at i:7069039 original size:24 final size:24
Alignment explanation
Indices: 7069012--7069076 Score: 94
Period size: 24 Copynumber: 2.7 Consensus size: 24
7069002 CTCTCCGAAG
* *
7069012 CTTCCCGATAATGGCTCGCTTGAA
1 CTTCCCGATTATGGCTCGCTTAAA
* *
7069036 CTTCTCGTTTATGGCTCGCTTAAA
1 CTTCCCGATTATGGCTCGCTTAAA
7069060 CTTCCCGATTATGGCTC
1 CTTCCCGATTATGGCTC
7069077 TTATGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.17, C:0.29, G:0.18, T:0.35
Consensus pattern (24 bp):
CTTCCCGATTATGGCTCGCTTAAA
Found at i:7069087 original size:24 final size:24
Alignment explanation
Indices: 7068945--7069087 Score: 71
Period size: 24 Copynumber: 5.8 Consensus size: 24
7068935 CGTCCTAATA
7068945 TATGGCTCTTCA-GAGCTTCCCGAT
1 TATGGCTCTT-ATGAGCTTCCCGAT
* **
7068969 TAAAGGCTCTTTCATGAGCTTCTTGAT
1 T-ATGGCTC-TT-ATGAGCTTCCCGAT
**
7068996 TAATGGCTC-TCCGAAGCTTCCCGAT
1 T-ATGGCTCTTATG-AGCTTCCCGAT
* * * * *
7069021 AATGGCTCGCT-TGAACTTCTCGTT
1 TATGGCTC-TTATGAGCTTCCCGAT
*
7069045 TATGGCTCGCTTA--AACTTCCCGAT
1 TATGGCT--CTTATGAGCTTCCCGAT
7069069 TATGGCTCTTATGAGCTTC
1 TATGGCTCTTATGAGCTTC
7069088 TCGTTATATA
Statistics
Matches: 90, Mismatches: 18, Indels: 22
0.69 0.14 0.17
Matches are distributed among these distances:
22 4 0.04
24 44 0.49
25 18 0.20
26 6 0.07
27 18 0.20
ACGTcount: A:0.19, C:0.26, G:0.20, T:0.36
Consensus pattern (24 bp):
TATGGCTCTTATGAGCTTCCCGAT
Found at i:7069088 original size:48 final size:49
Alignment explanation
Indices: 7068960--7069093 Score: 128
Period size: 48 Copynumber: 2.7 Consensus size: 49
7068950 CTCTTCAGAG
* * * * *
7068960 CTTCCCGATTAAAGGCTCTTTCATGAGCTTCTTGATTAATGGCTCTCCGAAG
1 CTTCCCGATT-ATGGCTCGTT-ATGAGCTTCTCG-TTAATGGCTCGCCGAAA
* * * * **
7069012 CTTCCCGATAATGGCTCGCT-TGAACTTCTCGTTTATGGCTCGCTTAAA
1 CTTCCCGATTATGGCTCGTTATGAGCTTCTCGTTAATGGCTCGCCGAAA
7069060 CTTCCCGATTATGGCTC-TTATGAGCTTCTCGTTA
1 CTTCCCGATTATGGCTCGTTATGAGCTTCTCGTTA
7069094 TATAGCTTGA
Statistics
Matches: 66, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
47 1 0.02
48 40 0.61
49 9 0.14
51 7 0.11
52 9 0.14
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.37
Consensus pattern (49 bp):
CTTCCCGATTATGGCTCGTTATGAGCTTCTCGTTAATGGCTCGCCGAAA
Found at i:7071340 original size:21 final size:21
Alignment explanation
Indices: 7071316--7071358 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
7071306 ATTAATTTTA
7071316 TTTTTTGAGCCCTTTCGGAGG
1 TTTTTTGAGCCCTTTCGGAGG
7071337 TTTTTTGAGCCCTTTCGGAGG
1 TTTTTTGAGCCCTTTCGGAGG
7071358 T
1 T
7071359 AACTCTTGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.09, C:0.19, G:0.28, T:0.44
Consensus pattern (21 bp):
TTTTTTGAGCCCTTTCGGAGG
Found at i:7075792 original size:101 final size:102
Alignment explanation
Indices: 7075671--7075855 Score: 293
Period size: 101 Copynumber: 1.8 Consensus size: 102
7075661 AAAGTGGTGG
* * *
7075671 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAT-A-GGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAG-ATGATAATGGTCACATGTGTACT
7075734 ACTATGTGCAGGCTACTATACGTACCGGATAGTTTCGA
65 ACTATGTGCAGGCTACTATACGTACCGGATAGTTTCGA
* * *
7075772 TCACGTGTGTAGTACTATGTGCAGGCTACTGCGTGTATCAGATGGTAATGGTCACATGTGTACTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATGATAATGGTCACATGTGTACTA
7075837 CTATGTGCAGGCTACTATA
66 CTATGTGCAGGCTACTATA
7075856 TGAACCAAAC
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
100 4 0.05
101 39 0.51
102 33 0.43
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATGATAATGGTCACATGTGTACTA
CTATGTGCAGGCTACTATACGTACCGGATAGTTTCGA
Found at i:7075801 original size:51 final size:50
Alignment explanation
Indices: 7075671--7075801 Score: 165
Period size: 50 Copynumber: 2.6 Consensus size: 50
7075661 AAAGTGGTGG
** *
7075671 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACACGTACCGGAATGATAGA
* * * * *
7075721 TCGCATGTGTAGTACTATGTGCAGGCTACTATACGTACCGG-ATAGTTTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACACGTACCGGAAT-G-ATAGA
7075772 TCACGTGTGTAGTACTATGTGCAGGCTACT
1 TCACGTGTGTAGTACTATGTGCAGGCTACT
7075802 GCGTGTATCA
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
49 2 0.03
50 37 0.54
51 30 0.43
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACACGTACCGGAATGATAGA
Found at i:7075832 original size:51 final size:50
Alignment explanation
Indices: 7075668--7075853 Score: 212
Period size: 51 Copynumber: 3.7 Consensus size: 50
7075658 GTGAAAGTGG
* *
7075668 TGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATA
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG-ATGGTA
* *** * *
7075719 -GGTCGCATGTGTAGTACTATGTGCAGGCTACTATACGTACCGGATAGTT
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGGTA
* * * * *
7075768 TCGATCACGTGTGTAGTACTATGTGCAGGCTACTGCGTGTATCAGATGGTAA
1 T-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGGT-A
*
7075820 TGGTCACATGTGTACTACTATGTGCAGGCTACTA
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTA
7075854 TATGAACCAA
Statistics
Matches: 109, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
49 3 0.03
50 38 0.35
51 67 0.61
52 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (50 bp):
TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGGTA
Found at i:7075928 original size:45 final size:45
Alignment explanation
Indices: 7075864--7075952 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
7075854 TATGAACCAA
* *
7075864 ACATTATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCCACCGG
1 ACATTATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCGG
*
7075909 ACATTATTGATTAATAAGGTGGTTGCTATGTGTTGAATCCACCG
1 ACATTATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCG
7075953 AGTATCTGTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.36
Consensus pattern (45 bp):
ACATTATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCGG
Found at i:7079418 original size:19 final size:20
Alignment explanation
Indices: 7079394--7079433 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
7079384 ACTTTACTAG
7079394 AAAACAAA-AC-TCTTTACAT
1 AAAACAAATACAT-TTTACAT
7079413 AAAACAAATACATTTTACAT
1 AAAACAAATACATTTTACAT
7079433 A
1 A
7079434 TACGACATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.42
20 10 0.53
21 1 0.05
ACGTcount: A:0.55, C:0.17, G:0.00, T:0.28
Consensus pattern (20 bp):
AAAACAAATACATTTTACAT
Found at i:7082908 original size:16 final size:15
Alignment explanation
Indices: 7082869--7082913 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 15
7082859 TAATGGAGAG
*
7082869 TGAAGAAATGAAATAA
1 TGAATAAAT-AAATAA
7082885 TGACATAAATAAATAGA
1 TGA-ATAAATAAATA-A
7082902 TGAATAAATAAA
1 TGAATAAATAAA
7082914 ATAAATAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
16 17 0.65
17 9 0.35
ACGTcount: A:0.62, C:0.02, G:0.13, T:0.22
Consensus pattern (15 bp):
TGAATAAATAAATAA
Found at i:7083168 original size:65 final size:65
Alignment explanation
Indices: 7083081--7083277 Score: 281
Period size: 65 Copynumber: 3.0 Consensus size: 65
7083071 AATGAAAGGG
* * * * *
7083081 AAATATAAGTAATATCATATTTAAATATTTAAAAAGTAAAAGAATAATAAATAAATAGATAAAAC
1 AAATATAAATAATATTAAATTTAAGTATTTAAAAAGTAAAAGAATAATAAATAAATAAATAAAAC
7083146 AAATATAAATAATATTAAATTTAAGTATTTAAAAAGTAAAAGAACAATATATAAATATAATAAAT
1 AAATATAAATAATATTAAATTTAAGTATTTAAAAAGTAAAAG---AATA-ATAAATA-AATAAAT
7083211 AAAAC
61 AAAAC
7083216 AAATAT--ATAATATTAAATTTAAGTATTTAAAAAAGTAAAAGAATAATAAATAAATAAATAAA
1 AAATATAAATAATATTAAATTTAAGTATTT-AAAAAGTAAAAGAATAATAAATAAATAAATAAA
7083278 TAGATAAAAT
Statistics
Matches: 121, Mismatches: 5, Indels: 13
0.87 0.04 0.09
Matches are distributed among these distances:
64 10 0.08
65 45 0.37
66 4 0.03
68 26 0.21
69 19 0.16
70 17 0.14
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (65 bp):
AAATATAAATAATATTAAATTTAAGTATTTAAAAAGTAAAAGAATAATAAATAAATAAATAAAAC
Found at i:7090305 original size:41 final size:42
Alignment explanation
Indices: 7090248--7090357 Score: 188
Period size: 41 Copynumber: 2.7 Consensus size: 42
7090238 CATTGAATGT
7090248 AAGGGGTTGCTAAGTGCAGATTCCCCGAAACTCTGAT-CAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAAACTCTGATCCAAA
*
7090289 AAGGGGTTGCTAAGTGCAGATTCCTCGAAACTCTGATCCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAAACTCTGATCCAAA
*
7090331 AA-GGGTTGCTAAGTGTAGATTCCCCGA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGA
7090358 GAGGTTGCTA
Statistics
Matches: 65, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
41 59 0.91
42 6 0.09
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (42 bp):
AAGGGGTTGCTAAGTGCAGATTCCCCGAAACTCTGATCCAAA
Found at i:7090421 original size:42 final size:42
Alignment explanation
Indices: 7090360--7090505 Score: 134
Period size: 42 Copynumber: 3.5 Consensus size: 42
7090350 TTCCCCGAGA
* * ** *
7090360 GGTTGCTAAGTGCTAATTCCCTGAATTGTTGATTCTAAAGGT
1 GGTTGCTAAGTGCTGATTCCCTGTATCATTGATTATAAAGGT
* * *
7090402 GGTTGCTAAGTGTTGATTCCACTGTATCCTTGATTGTAAAAGG-
1 GGTTGCTAAGTGCTGATTCC-CTGTATCATTGATTAT-AAAGGT
* * * * *
7090445 GGTTGTTATGTGCTGATTCCCCGTATCACTGAATAT-AAGGT
1 GGTTGCTAAGTGCTGATTCCCTGTATCATTGATTATAAAGGT
*
7090486 GGTTGCTAAGTGTTGATTCC
1 GGTTGCTAAGTGCTGATTCC
7090506 ACCGAGTAAC
Statistics
Matches: 84, Mismatches: 17, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
40 4 0.05
41 17 0.20
42 29 0.35
43 29 0.35
44 5 0.06
ACGTcount: A:0.22, C:0.15, G:0.25, T:0.38
Consensus pattern (42 bp):
GGTTGCTAAGTGCTGATTCCCTGTATCATTGATTATAAAGGT
Found at i:7090449 original size:43 final size:43
Alignment explanation
Indices: 7090360--7090505 Score: 131
Period size: 43 Copynumber: 3.5 Consensus size: 43
7090350 TTCCCCGAGA
* * ** *
7090360 GGTTGCTAAGTGCTAATTCCCTGAATTGTTGATTCT-AAAGGT
1 GGTTGCTAAGTGCTGATTCCCTGTATCCTTGATTATAAAAGGT
* *
7090402 GGTTGCTAAGTGTTGATTCCACTGTATCCTTGATTGTAAAAGG-
1 GGTTGCTAAGTGCTGATTCC-CTGTATCCTTGATTATAAAAGGT
* * * *
7090445 GGTTGTTATGTGCTGATTCCCCGTATCAC-TGA--ATATAAGGT
1 GGTTGCTAAGTGCTGATTCCCTGTATC-CTTGATTATAAAAGGT
*
7090486 GGTTGCTAAGTGTTGATTCC
1 GGTTGCTAAGTGCTGATTCC
7090506 ACCGAGTAAC
Statistics
Matches: 85, Mismatches: 15, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
40 6 0.07
41 17 0.20
42 27 0.32
43 30 0.35
44 5 0.06
ACGTcount: A:0.22, C:0.15, G:0.25, T:0.38
Consensus pattern (43 bp):
GGTTGCTAAGTGCTGATTCCCTGTATCCTTGATTATAAAAGGT
Found at i:7093092 original size:43 final size:42
Alignment explanation
Indices: 7093000--7093145 Score: 172
Period size: 43 Copynumber: 3.5 Consensus size: 42
7092990 GTTACTCGGT
* *
7093000 GGAATCAGCACTTAGCAACCACC-TTATATTC-AGTGATACGG
1 GGAATCAGCACTTAGCAACCACCTTTACAATCAAG-GATACGG
* *
7093041 GGAATCAGCACATAACAACC-CCTTTCACAATCAAGGATACGG
1 GGAATCAGCACTTAGCAACCACCTTT-ACAATCAAGGATACGG
* ** *
7093083 TGGAATCAGCACTTAGCAACCACCTTTAGAATCAATAATTCGG
1 -GGAATCAGCACTTAGCAACCACCTTTACAATCAAGGATACGG
7093126 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
7093146 TCTCAGGGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
40 2 0.02
41 20 0.22
42 31 0.34
43 32 0.36
44 5 0.06
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.21
Consensus pattern (42 bp):
GGAATCAGCACTTAGCAACCACCTTTACAATCAAGGATACGG
Found at i:7093137 original size:42 final size:43
Alignment explanation
Indices: 7092996--7093145 Score: 182
Period size: 42 Copynumber: 3.6 Consensus size: 43
7092986 AACTGTTACT
* * *
7092996 CGGTGGAATCAGCACTTAGCAACCACC-TTATATTCAGTGATA
1 CGGTGGAATCAGCACTTAGCAACCACCTTTACAATCAATGATA
* * *
7093038 CGG-GGAATCAGCACATAACAACC-CCTTTCACAATCAAGGATA
1 CGGTGGAATCAGCACTTAGCAACCACCTTT-ACAATCAATGATA
* * *
7093080 CGGTGGAATCAGCACTTAGCAACCACCTTTAGAATCAATAATT
1 CGGTGGAATCAGCACTTAGCAACCACCTTTACAATCAATGATA
7093123 CGG-GGAATCAGCACTTAGCAACC
1 CGGTGGAATCAGCACTTAGCAACC
7093146 TCTCAGGGAA
Statistics
Matches: 92, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
40 2 0.02
41 20 0.22
42 35 0.38
43 30 0.33
44 5 0.05
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.21
Consensus pattern (43 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTTACAATCAATGATA
Found at i:7093154 original size:26 final size:26
Alignment explanation
Indices: 7093125--7093174 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
7093115 CAATAATTCG
7093125 GGGAATCAGCACTTAGCAACCTCTCA
1 GGGAATCAGCACTTAGCAACCTCTCA
**
7093151 GGGAATTTGCACTTAGCAACCTCT
1 GGGAATCAGCACTTAGCAACCTCT
7093175 TTTTGATTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (26 bp):
GGGAATCAGCACTTAGCAACCTCTCA
Found at i:7093296 original size:41 final size:41
Alignment explanation
Indices: 7093148--7093298 Score: 248
Period size: 41 Copynumber: 3.7 Consensus size: 41
7093138 TAGCAACCTC
* * *
7093148 TCAGGGAATTTGCACTTAGCAACCTCTTTTTGATTAGAGTT
1 TCAGGGAATCTGCACTTAGCAACCCCTTTTTGATCAGAGTT
* *
7093189 TCGGGGAATCTGCACTTAGCAACCCTTTTTTGATCAGAGTT
1 TCAGGGAATCTGCACTTAGCAACCCCTTTTTGATCAGAGTT
*
7093230 TCGGGGAATCTGCACTTAGCAACCCCTTTTTGATCAGAGTT
1 TCAGGGAATCTGCACTTAGCAACCCCTTTTTGATCAGAGTT
7093271 TCAGGGAATCTGCACTTAGCAACCCCTT
1 TCAGGGAATCTGCACTTAGCAACCCCTT
7093299 ACATTCAATG
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 103 1.00
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (41 bp):
TCAGGGAATCTGCACTTAGCAACCCCTTTTTGATCAGAGTT
Found at i:7099917 original size:14 final size:14
Alignment explanation
Indices: 7099898--7099937 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
7099888 TTGTTTCACT
7099898 GAAAATGACTTATG
1 GAAAATGACTTATG
* *
7099912 GAAAATGATTTCTG
1 GAAAATGACTTATG
*
7099926 AAAAATGACTTA
1 GAAAATGACTTA
7099938 CTTTTCTGGA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.45, C:0.07, G:0.17, T:0.30
Consensus pattern (14 bp):
GAAAATGACTTATG
Found at i:7100546 original size:18 final size:18
Alignment explanation
Indices: 7100508--7100543 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
7100498 TTATTATTTT
*
7100508 TAAAATTTACTATTAAAA
1 TAAAATTTAATATTAAAA
7100526 TAAAATTTAAATATTAAA
1 TAAAATTT-AATATTAAA
7100544 TAATTTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
TAAAATTTAATATTAAAA
Found at i:7107105 original size:17 final size:18
Alignment explanation
Indices: 7107072--7107105 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7107062 TAAATTTTAA
7107072 AATAAATATAGGCATAAT
1 AATAAATATAGGCATAAT
*
7107090 AATAAATTTA-GCATAA
1 AATAAATATAGGCATAA
7107106 CATTTATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.56, C:0.06, G:0.09, T:0.29
Consensus pattern (18 bp):
AATAAATATAGGCATAAT
Found at i:7109952 original size:16 final size:17
Alignment explanation
Indices: 7109931--7109963 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7109921 CTTTCGAATA
7109931 TAGTG-ATTTTTTTTAC
1 TAGTGAATTTTTTTTAC
7109947 TAGTGAATTTTTTTTAC
1 TAGTGAATTTTTTTTAC
7109964 CAGTTGATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.21, C:0.06, G:0.12, T:0.61
Consensus pattern (17 bp):
TAGTGAATTTTTTTTAC
Found at i:7112209 original size:44 final size:42
Alignment explanation
Indices: 7112149--7112234 Score: 109
Period size: 42 Copynumber: 2.0 Consensus size: 42
7112139 AAACATTCAA
* * * *
7112149 ATTGAATCATCGAATTACACAGTATAATTCTAATTAGAATATTC
1 ATTGAATCATCAAATTA-A-AATATAATTCTAATCAAAATATTC
*
7112193 ATTGAATCTTCAAATTAAAATATAATTCTAATCAAAATATTC
1 ATTGAATCATCAAATTAAAATATAATTCTAATCAAAATATTC
7112235 CATTATCAGT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
42 21 0.57
43 1 0.03
44 15 0.41
ACGTcount: A:0.44, C:0.13, G:0.06, T:0.37
Consensus pattern (42 bp):
ATTGAATCATCAAATTAAAATATAATTCTAATCAAAATATTC
Found at i:7112742 original size:30 final size:29
Alignment explanation
Indices: 7112674--7112753 Score: 83
Period size: 30 Copynumber: 2.7 Consensus size: 29
7112664 TATTAAAAGT
7112674 ATAATATTTTGGTAAAAAAATTTGGACTTC
1 ATAATATTTTGGTAAAAAAATTT-GACTTC
*
7112704 ATATTATTTTGGTAAATAATAA-TT-ACTTAC
1 ATAATATTTTGGTAAA-AA-AATTTGACTT-C
**
7112734 ATAATATTTTAATAAAAAAA
1 ATAATATTTTGGTAAAAAAA
7112754 GCCACTTTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
28 2 0.05
29 6 0.14
30 29 0.67
31 4 0.09
32 2 0.05
ACGTcount: A:0.46, C:0.05, G:0.07, T:0.41
Consensus pattern (29 bp):
ATAATATTTTGGTAAAAAAATTTGACTTC
Found at i:7113104 original size:16 final size:16
Alignment explanation
Indices: 7113083--7113116 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7113073 TTATTTTATT
* *
7113083 TTTATATACTATGAAA
1 TTTATATAATATAAAA
7113099 TTTATATAATATAAAA
1 TTTATATAATATAAAA
7113115 TT
1 TT
7113117 AAATATATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (16 bp):
TTTATATAATATAAAA
Found at i:7128785 original size:198 final size:199
Alignment explanation
Indices: 7128353--7129388 Score: 1238
Period size: 198 Copynumber: 5.2 Consensus size: 199
7128343 AAACCATAGT
*
7128353 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTAGAACAGA
1 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
*
7128418 TTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAGAAGATTGAAGCTACAACA-
66 TTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAGAAGATTGAAGCCACAACAC
*
7128482 GCAGATCTTACTTTCCAGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTTTC
131 G-A-ATCTTACTTTCCAGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTTCC
7128547 CTGACA
194 CTGACA
*
7128553 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGCTGCAGTGGAACAGA
1 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
* * * * * * *
7128618 TTGAAGCTACAACGGCGGATCTCATTTTCCTGACATTGCAATCAA-AAGATTGAGGCCACAATGA
66 TTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAGAAGATTGAAGCCACAA-CA
*
7128682 CGAATCTTA-TTTCCAGGCGGTGCAGTGGAACAGATTGAAGCTACGACAGCGGATCTTACTTCCC
130 CGAATCTTACTTTCCAGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTTCCC
7128746 TGACA
195 TGACA
* *
7128751 TTGCAATTAAGAAGCTTGAAGCTACAACAGCGGATCTTACTCTCCTAGCGTTGCAGTGGAACAGA
1 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
* * * *
7128816 TTGAAGCTACAACAGCGGATCTCACTTCCCTGACATTGCAATCAA-AAGATTGAGGCCACAACGG
66 TTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAGAAGATTGAAGCCACAAC-A
* *
7128880 CGAATCTTA-TTTCCATGCGGTGCAGTGGAACAGATTGAAGCTACGACAGCGGATCTTACTTCCC
130 CGAATCTTACTTTCCAGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTTCCC
7128944 TGACA
195 TGACA
* * * * * * *
7128949 TTGAAATTAAGAAGATTGAAGCTACAACAACGGATCTCACTTCCCT-GACAG-TGCAAT-TAAGA
1 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAG-C-GTTGCAGTGGAA-C
* * * * *
7129011 AGATTGAAGCTACAATAGTGGGTCTTACTTCTCTGACATTGCAATTAAGAAGATTGAAGCTACAA
63 AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAGAAGATTGAAGCCACAA
* * * * *
7129076 CAGCGGATCTTACTCTCCTA-GCGTTGCAGTAGAACAGATTGAAGCTACAACAGCGGATCTCACT
128 CA-CGAATCTTACTTTCC-AGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACT
* *
7129140 TTCTTGACA
191 TCCCTGACA
* * * * * * * *
7129149 TTGCAATCAA-AAGATTGAGGCCACAACGGAGAATCTTA-TTTCC-AGGCGGTGCAGTGGAACAA
1 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTA-GCGTTGCAGTGGAACAG
* * *
7129211 ATTGAAGCTACAGCAGCAGATCTTACTTCCCTGACATTGCAATTAAGAAGATTGAAGCTACAACA
65 ATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAGAAGATTGAAGCCACAACA
* ** * * * ** * ** *
7129276 GTGGGTCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTAC-TCT
130 -CGAATCTTACTTTCCAGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTTC-
*
7129340 CCT-AGCG
193 CCTGA-CA
* * * *
7129347 TTGCAGTGGAA-CAGATTGAAGCTACAACAGCGGATCTCACTT
1 TTGCAAT-TAAGAAGATTGAAGCTACAACAGCGGATCTTACTT
7129389 CCCTGACATT
Statistics
Matches: 726, Mismatches: 91, Indels: 38
0.85 0.11 0.04
Matches are distributed among these distances:
197 6 0.01
198 461 0.63
199 91 0.13
200 166 0.23
201 2 0.00
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (199 bp):
TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
TTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAGAAGATTGAAGCCACAACAC
GAATCTTACTTTCCAGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTTCCCT
GACA
Found at i:7128819 original size:248 final size:245
Alignment explanation
Indices: 7128515--7129586 Score: 1318
Period size: 248 Copynumber: 4.3 Consensus size: 245
7128505 GCAGTGGAAC
*
7128515 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTGACATTGCAATTAAGAAGATTGAAGCTACAA
1 AGATTGAAGCTACAACAGCGGATCTTAC-TTCCTGACATTGCAATGAA-AAGATTGAAGCTACAA
* * *
7128580 CAGCGGATCTTACTTTCCTAGCGCTGCAGTGGAACAGATTGAAGCTACAACGGCGGATCTCATTT
64 CAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTCACTT
7128645 TCCTGACATTGCAATCAAAAGATTGAGGCCACAATGACGAATCTTATTTCCAGGCGGTGCAGTGG
129 TCCTGACATTGCAATCAAAAGATTGAGGCCACAA-GACGAATCTTATTTCCAGGCGGTGCAGTGG
*
7128710 AACAGATTGAAGCTAC-GACAGCGGATCTTACTTCCCTGACATTGCAATTAAGA
193 AACAAATTGAAGCTACAG-CAGCGGATCTTACTTCCCTGACATTGCAATTAAGA
* * * *
7128763 AGCTTGAAGCTACAACAGCGGATCTTACTCTCCT-AGCGTTGCAGTGGAACAGATTGAAGCTACA
1 AGATTGAAGCTACAACAGCGGATCTTACT-TCCTGA-CATTGCAAT-GAAAAGATTGAAGCTACA
* * * * * * * * * * *
7128827 ACAGCGGATCTCACTTCCCT-GACATTGCAAT-CAAAAGATTGAGGCCACAACGGCGAATCTTA-
63 ACAGCGGATCTTACTTTCCTAG-CGTTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTCAC
** * * * * * * * * * **
7128889 TTTCCATG-CGGTGCAGTGGAACAGATTGAAGCTACGACAG-CGGATCTTACTTCCCTGACATTG
127 TTTCC-TGACATTGCAAT-CAAAAGATTGAGGCCAC-A-AGACGAATCTTA-TTTCCAGGCGGTG
* * * * * * * *
7128952 AAAT-TAAGAAGATTGAAGCTACAACAACGGATCTCACTTCCCTGACAGTGCAATTAAGA
187 CAGTGGAACAA-ATTGAAGCTACAGCAGCGGATCTTACTTCCCTGACATTGCAATTAAGA
* * * *
7129011 AGATTGAAGCTACAATAGTGGGTCTTACTTCTCTGACATTGCAATTAAGAAGATTGAAGCTACAA
1 AGATTGAAGCTACAACAGCGGATCTTACTTC-CTGACATTGCAATGAA-AAGATTGAAGCTACAA
* *
7129076 CAGCGGATCTTACTCTCCTAGCGTTGCAGTAGAACAGATTGAAGCTACAACAGCGGATCTCACTT
64 CAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTCACTT
*
7129141 TCTTGACATTGCAATCAAAAGATTGAGGCCACAACGGA-GAATCTTATTTCCAGGCGGTGCAGTG
129 TCCTGACATTGCAATCAAAAGATTGAGGCCACAA--GACGAATCTTATTTCCAGGCGGTGCAGTG
*
7129205 GAACAAATTGAAGCTACAGCAGCAGATCTTACTTCCCTGACATTGCAATTAAGA
192 GAACAAATTGAAGCTACAGCAGCGGATCTTACTTCCCTGACATTGCAATTAAGA
* * *
7129259 AGATTGAAGCTACAACAGTGGGTCTTACTTCCCTGACATTGCAATTAAAAAGATTGAAGCTACAA
1 AGATTGAAGCTACAACAGCGGATCTTACTT-CCTGACATTGCAA-TGAAAAGATTGAAGCTACAA
*
7129324 CAGCGGATCTTACTCTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTCACTT
64 CAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTCACTT
* *
7129389 CCCTGACATTGCAATCAAAAGATTGAGGCCACAACGGCGAATCTTATTTCCAGGCGGTGCAGTGG
129 TCCTGACATTGCAATCAAAAGATTGAGGCCACAA-GACGAATCTTATTTCCAGGCGGTGCAGTGG
*
7129454 AACAAATTGAAGCTACAGCAGCGGATCTTACTTCCCTGACATTGCAATTAAAA
193 AACAAATTGAAGCTACAGCAGCGGATCTTACTTCCCTGACATTGCAATTAAGA
* * *
7129507 AGATTGAAGCTACAACAGCGGATCTTACTTTCCT-AGCGTTGCAGTGGAACAGATTGAAGCTACA
1 AGATTGAAGCTACAACAGCGGATCTTAC-TTCCTGA-CATTGCAAT-GAAAAGATTGAAGCTACA
*
7129571 ACAGCTGATCTTACTT
63 ACAGCGGATCTTACTT
7129587 CCCTGACATT
Statistics
Matches: 698, Mismatches: 98, Indels: 56
0.82 0.12 0.07
Matches are distributed among these distances:
246 11 0.02
247 62 0.09
248 553 0.79
249 62 0.09
250 10 0.01
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (245 bp):
AGATTGAAGCTACAACAGCGGATCTTACTTCCTGACATTGCAATGAAAAGATTGAAGCTACAACA
GCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTCACTTTC
CTGACATTGCAATCAAAAGATTGAGGCCACAAGACGAATCTTATTTCCAGGCGGTGCAGTGGAAC
AAATTGAAGCTACAGCAGCGGATCTTACTTCCCTGACATTGCAATTAAGA
Found at i:7129017 original size:298 final size:297
Alignment explanation
Indices: 7128353--7129383 Score: 1357
Period size: 298 Copynumber: 3.5 Consensus size: 297
7128343 AAACCATAGT
* * *
7128353 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCT-AGC-GTTGC-AGT-AGAA
1 TTGCAATTAAGAAGATTGAAGCTACAACAACGGATCTTACTTCCCTGA-CAG-TGCAATTAAG-A
7128414 CAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAGAAGATTGAAGCTACA
63 -AGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAGAAGATTGAAGCTACA
* * * *
7128479 ACAGCAGATCTTACTTTCC-AGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTAC
127 ACAGCGGATCTTACTCTCCTA-GCGTTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTCAC
* * * * * *
7128543 TTTCCTGACATTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCC-TAGCGCTGC
191 TTTCCTGACATTGCAATCAA-AAGATTGAGGCCACAACGGCGAATCTTA-TTTCCAT-GCGGTGC
* * * *
7128607 AGTGGAACAGATTGAAGCTACAACGGCGGATCTCATTTTCCTGACA
253 AGTGGAACAGATTGAAGCTAC-ACAGCGGATCTTACTTCCCTGACA
* * * ** * * * * * * * *
7128653 TTGCAATCAA-AAGATTGAGGCCACAATGACGAATCTTA-TTTCCAGGCGGTGCAGTGGAA-CAG
1 TTGCAATTAAGAAGATTGAAGCTACAACAACGGATCTTACTTCCCTGACAGTGCAAT-TAAGAAG
* *
7128715 ATTGAAGCTACGACAGCGGATCTTACTTCCCTGACATTGCAATTAAGAAGCTTGAAGCTACAACA
65 ATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAGAAGATTGAAGCTACAACA
*
7128780 GCGGATCTTACTCTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTCACTTCC
130 GCGGATCTTACTCTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTCACTTTC
7128845 CTGACATTGCAATCAAAAGATTGAGGCCACAACGGCGAATCTTATTTCCATGCGGTGCAGTGGAA
195 CTGACATTGCAATCAAAAGATTGAGGCCACAACGGCGAATCTTATTTCCATGCGGTGCAGTGGAA
7128910 CAGATTGAAGCTACGACAGCGGATCTTACTTCCCTGACA
260 CAGATTGAAGCTAC-ACAGCGGATCTTACTTCCCTGACA
* *
7128949 TTGAAATTAAGAAGATTGAAGCTACAACAACGGATCTCACTTCCCTGACAGTGCAATTAAGAAGA
1 TTGCAATTAAGAAGATTGAAGCTACAACAACGGATCTTACTTCCCTGACAGTGCAATTAAGAAGA
* * * *
7129014 TTGAAGCTACAATAGTGGGTCTTACTTCTCTGACATTGCAATTAAGAAGATTGAAGCTACAACAG
66 TTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAGAAGATTGAAGCTACAACAG
* *
7129079 CGGATCTTACTCTCCTAGCGTTGCAGTAGAACAGATTGAAGCTACAACAGCGGATCTCACTTTCT
131 CGGATCTTACTCTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTCACTTTCC
* *
7129144 TGACATTGCAATCAAAAGATTGAGGCCACAACGGAGAATCTTATTTCCAGGCGGTGCAGTGGAAC
196 TGACATTGCAATCAAAAGATTGAGGCCACAACGGCGAATCTTATTTCCATGCGGTGCAGTGGAAC
* *
7129209 AAATTGAAGCTACAGCAGCAGATCTTACTTCCCTGACA
261 AGATTGAAGCTACA-CAGCGGATCTTACTTCCCTGACA
** * * *
7129247 TTGCAATTAAGAAGATTGAAGCTACAACAGTGGGTCTTACTTCCCTGACATTGCAATTAAAAAGA
1 TTGCAATTAAGAAGATTGAAGCTACAACAACGGATCTTACTTCCCTGACAGTGCAATTAAGAAGA
* * * *
7129312 TTGAAGCTACAACAGCGGATCTTAC-TCTCCT-AGCGTTGCAGTGGAA-CAGATTGAAGCTACAA
66 TTGAAGCTACAACAGCGGATCTTACTTC-CCTGA-CATTGCAAT-TAAGAAGATTGAAGCTACAA
7129374 CAGCGGATCT
128 CAGCGGATCT
7129384 CACTTCCCTG
Statistics
Matches: 643, Mismatches: 74, Indels: 30
0.86 0.10 0.04
Matches are distributed among these distances:
296 60 0.09
297 53 0.08
298 494 0.77
299 26 0.04
300 9 0.01
301 1 0.00
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (297 bp):
TTGCAATTAAGAAGATTGAAGCTACAACAACGGATCTTACTTCCCTGACAGTGCAATTAAGAAGA
TTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAGAAGATTGAAGCTACAACAG
CGGATCTTACTCTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTCACTTTCC
TGACATTGCAATCAAAAGATTGAGGCCACAACGGCGAATCTTATTTCCATGCGGTGCAGTGGAAC
AGATTGAAGCTACACAGCGGATCTTACTTCCCTGACA
Found at i:7129634 original size:50 final size:50
Alignment explanation
Indices: 7128353--7129623 Score: 1083
Period size: 50 Copynumber: 25.6 Consensus size: 50
7128343 AAACCATAGT
* * *
7128353 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCT-AGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGA-CA
* *
7128403 TTGC-AGTAGAACAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
1 TTGCAATTA-AAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * * * *
7128453 TTGCAATTAAGAAGATTGAAGCTACAACAGCAGATCTTACTTTCCAGGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * ** * *
7128503 GTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTTTCCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * *
7128553 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCT-AGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGA-CA
* * ** * * * * *
7128603 CTGCAGTGGAACAGATTGAAGCTACAACGGCGGATCTCATTTTCCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * * * * * * *
7128653 TTGCAA-TCAAAAGATTGAGGCCACAA-TGACGAATCTTA-TTTCCAGGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACAG-CGGATCTTACTTCCCTGACA
* * ** * *
7128701 GTGCAGTGGAACAGATTGAAGCTACGACAGCGGATCTTACTTCCCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * *
7128751 TTGCAATTAAGAAGCTTGAAGCTACAACAGCGGATCTTAC-TCTCCT-AGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTC-CCTGA-CA
* ** * *
7128801 TTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTCACTTCCCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * * * * * *
7128851 TTGCAA-TCAAAAGATTGAGGCCACAACGGCGAATCTTATTTCCATG-CG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * ** * *
7128899 GTGCAGTGGAACAGATTGAAGCTACGACAGCGGATCTTACTTCCCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * *
7128949 TTGAAATTAAGAAGATTGAAGCTACAACAACGGATCTCACTTCCCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * * * *
7128999 GTGCAATTAAGAAGATTGAAGCTACAATAGTGGGTCTTACTTCTCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* *
7129049 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTAC-TCTCCT-AGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTC-CCTGA-CA
* * * * *
7129099 TTGC-AGTAGAACAGATTGAAGCTACAACAGCGGATCTCACTTTCTTGACA
1 TTGCAATTA-AAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * * * * * * * *
7129149 TTGCAA-TCAAAAGATTGAGGCCACAACGGAGAATCTTA-TTTCCAGGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * * * *
7129197 GTGCAGTGGAACAA-ATTGAAGCTACAGCAGCAGATCTTACTTCCCTGACA
1 TTGCAAT-TAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * *
7129247 TTGCAATTAAGAAGATTGAAGCTACAACAGTGGGTCTTACTTCCCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
*
7129297 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTAC-TCTCCT-AGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTC-CCTGA-CA
* ** * *
7129347 TTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTCACTTCCCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * * * * * * *
7129397 TTGCAA-TCAAAAGATTGAGGCCACAACGGCGAATCTTA-TTTCCAGGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* * * * *
7129445 GTGCAGTGGAACAA-ATTGAAGCTACAGCAGCGGATCTTACTTCCCTGACA
1 TTGCAAT-TAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* *
7129495 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCT-AGCG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGA-CA
* ** * *
7129545 TTGCAGTGGAACAGATTGAAGCTACAACAGCTGATCTTACTTCCCTGACA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
* *
7129595 TTACAATTAAAAATATTGAAGCTACAACA
1 TTGCAATTAAAAAGATTGAAGCTACAACA
7129624 ACATGTCTTA
Statistics
Matches: 953, Mismatches: 233, Indels: 70
0.76 0.19 0.06
Matches are distributed among these distances:
48 37 0.04
49 214 0.22
50 687 0.72
51 15 0.02
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (50 bp):
TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
Found at i:7134285 original size:19 final size:19
Alignment explanation
Indices: 7134261--7134333 Score: 137
Period size: 19 Copynumber: 3.8 Consensus size: 19
7134251 AATCTTAAAG
7134261 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
7134280 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
7134299 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
7134318 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
7134334 AGATATGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 52 1.00
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:7134310 original size:38 final size:36
Alignment explanation
Indices: 7134251--7134340 Score: 137
Period size: 38 Copynumber: 2.4 Consensus size: 36
7134241 ATGGAAACAT
7134251 AATCTTA-AAGGATATGCAATCTTAGATATGATATGC
1 AATCTTAGAA-GATATGCAATCTTAGATATGATATGC
*
7134287 AATCTTAGATATGATATGTAATCTTAGATATGATATGC
1 AATCTTAGA-A-GATATGCAATCTTAGATATGATATGC
7134325 AATCTTAGAAGATATG
1 AATCTTAGAAGATATG
7134341 ATTTTGTAAT
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
36 13 0.26
37 2 0.04
38 35 0.70
ACGTcount: A:0.39, C:0.09, G:0.17, T:0.36
Consensus pattern (36 bp):
AATCTTAGAAGATATGCAATCTTAGATATGATATGC
Found at i:7134359 original size:22 final size:20
Alignment explanation
Indices: 7134261--7134359 Score: 105
Period size: 19 Copynumber: 4.9 Consensus size: 20
7134251 AATCTTAAAG
*
7134261 GATATGCAATCTT-AGATAT
1 GATATGTAATCTTGAGATAT
*
7134280 GATATGCAATCTT-AGATAT
1 GATATGTAATCTTGAGATAT
7134299 GATATGTAATCTT-AGATAT
1 GATATGTAATCTTGAGATAT
*
7134318 GATATGCAATCTTAGAAGATAT
1 GATATGTAATCTT-G-AGATAT
*
7134340 GATTTTGTAATCTTGGAGAT
1 GA-TATGTAATCTT-GAGAT
7134360 TTAATTTGTA
Statistics
Matches: 71, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
19 49 0.69
22 12 0.17
23 10 0.14
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.38
Consensus pattern (20 bp):
GATATGTAATCTTGAGATAT
Found at i:7135037 original size:12 final size:12
Alignment explanation
Indices: 7135020--7135046 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
7135010 CTTTATAGTC
7135020 TATTTTTTATTT
1 TATTTTTTATTT
7135032 TATTTTTTATTT
1 TATTTTTTATTT
7135044 TAT
1 TAT
7135047 AATTTTGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (12 bp):
TATTTTTTATTT
Done.