Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60343961
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 596159 characters in sequence are not A, C, G, or T
File 25 of 204
Found at i:7136976 original size:46 final size:46
Alignment explanation
Indices: 7136910--7137005 Score: 192
Period size: 46 Copynumber: 2.1 Consensus size: 46
7136900 TTAATCTCAT
7136910 TTTTGGACTCCTTCATTATACATATTGAATATGATAAAATGAAAAA
1 TTTTGGACTCCTTCATTATACATATTGAATATGATAAAATGAAAAA
7136956 TTTTGGACTCCTTCATTATACATATTGAATATGATAAAATGAAAAA
1 TTTTGGACTCCTTCATTATACATATTGAATATGATAAAATGAAAAA
7137002 TTTT
1 TTTT
7137006 ATCTGATTCA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 50 1.00
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (46 bp):
TTTTGGACTCCTTCATTATACATATTGAATATGATAAAATGAAAAA
Found at i:7160244 original size:24 final size:24
Alignment explanation
Indices: 7160195--7160245 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
7160185 ATTTGATATT
**
7160195 TATTAGAATAAGGTGTTTCACTCC
1 TATTAGAATAAGGTGTTTCAAGCC
*
7160219 TATTAGAATATGGT-TTTACAAGCC
1 TATTAGAATAAGGTGTTT-CAAGCC
7160243 TAT
1 TAT
7160246 AAATAGACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 3 0.13
24 20 0.87
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Consensus pattern (24 bp):
TATTAGAATAAGGTGTTTCAAGCC
Found at i:7163425 original size:21 final size:22
Alignment explanation
Indices: 7163399--7163441 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
7163389 CCAACAAAGA
*
7163399 AATCAATTTTATG-AATTTTAC
1 AATCAATTGTATGAAATTTTAC
7163420 AATCAATTGTATGCAAATTTTA
1 AATCAATTGTATG-AAATTTTA
7163442 TCGCCAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 12 0.63
23 7 0.37
ACGTcount: A:0.40, C:0.09, G:0.07, T:0.44
Consensus pattern (22 bp):
AATCAATTGTATGAAATTTTAC
Found at i:7163551 original size:21 final size:22
Alignment explanation
Indices: 7163525--7163566 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7163515 GTGTAACATC
7163525 TTAAAT-CTATTT-ATATATGTT
1 TTAAATACT-TTTCATATATGTT
7163546 TTAAATACTTTTCATATATGT
1 TTAAATACTTTTCATATATGT
7163567 AAAAATAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (22 bp):
TTAAATACTTTTCATATATGTT
Found at i:7164153 original size:15 final size:15
Alignment explanation
Indices: 7164130--7164164 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
7164120 AAAAAATACA
*
7164130 TTTCTTTTCTTTTCC
1 TTTCCTTTCTTTTCC
*
7164145 TTTCCTTTCTTTTTC
1 TTTCCTTTCTTTTCC
7164160 TTTCC
1 TTTCC
7164165 CATCAACAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTCCTTTCTTTTCC
Found at i:7165083 original size:16 final size:15
Alignment explanation
Indices: 7165063--7165104 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
7165053 TCGAATAAAA
*
7165063 TAAATCTTAAATAAT
1 TAAATCCTAAATAAT
*
7165078 TCAAATCCAAAATAAT
1 T-AAATCCTAAATAAT
7165094 TAAATCCTAAA
1 TAAATCCTAAA
7165105 ACTCAACCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (15 bp):
TAAATCCTAAATAAT
Found at i:7165427 original size:22 final size:21
Alignment explanation
Indices: 7165377--7165428 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
7165367 TATTATTATT
*
7165377 TTAAATTAATATTTTTTATAA
1 TTAAATTTATATTTTTTATAA
*
7165398 -AAATATTTATATATTTTTATAA
1 TTAA-ATTTATAT-TTTTTATAA
7165420 TTAAATTTA
1 TTAAATTTA
7165429 ACTAAAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
20 2 0.08
21 7 0.28
22 14 0.56
23 2 0.08
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
TTAAATTTATATTTTTTATAA
Found at i:7174821 original size:21 final size:22
Alignment explanation
Indices: 7174781--7174827 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
7174771 CTCTACTCAA
* *
7174781 ACTCCACCTGTTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
*
7174802 ACTCCACCTGCTGTGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
7174824 ACTC
1 ACTC
7174828 ACTCCTTCTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.21, C:0.34, G:0.19, T:0.26
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:7177658 original size:15 final size:16
Alignment explanation
Indices: 7177631--7177663 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
7177621 TTAAAATATA
7177631 AATTTACTATTTTAAT
1 AATTTACTATTTTAAT
*
7177647 AATTTA-TATTTTTAT
1 AATTTACTATTTTAAT
7177662 AA
1 AA
7177664 CTTTTTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (16 bp):
AATTTACTATTTTAAT
Found at i:7179798 original size:16 final size:16
Alignment explanation
Indices: 7179777--7179810 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
7179767 ATTAGAGTCA
7179777 ATTTTGAGTTCAAGTT
1 ATTTTGAGTTCAAGTT
*
7179793 ATTTTGAGTTTAAGTT
1 ATTTTGAGTTCAAGTT
7179809 AT
1 AT
7179811 ACATGTACGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.26, C:0.03, G:0.18, T:0.53
Consensus pattern (16 bp):
ATTTTGAGTTCAAGTT
Found at i:7183011 original size:284 final size:284
Alignment explanation
Indices: 7182671--7183189 Score: 792
Period size: 284 Copynumber: 1.8 Consensus size: 284
7182661 TGTATCAATG
*
7182671 AATTTCAACACAGGGATATAGTGATCAAAACACAAAATCTACCATATTCCAGAAATACAAAAGTC
1 AATTTCAACACAGGGATATAGTGATCAAAACACAAAATCTACCATATTCAAGAAATACAAAAGTC
* * *
7182736 AATGATCCAAACACAACAACAAAACAGCGTCAAGAACTGGGTTTTGGGTGTTGACTACAA-AAAC
66 AATGATCCAAACACAACAACAAAACAGCATCAAGAACTGGGTTTTGGGTGCTGAATACAAGAAA-
* **
7182800 AAAAAGGATCAAATCAATGAATTTCAACTAAATGAAGAAA-AA-AAATTGAACCCATTTAAGAAA
130 AAAAAGGATCAAATCAATGAATTTCAACTAAAT-AA-AAACAATAAACTGAACCCACCTAAGAAA
* *
7182863 ATGAGGCAATCTAATTGCAAAAGTGAGCAAAACTAAGAAACAATCTATGTATTGCAATCCGCACA
193 ATAAGGCAATCTAATTGCAAAAGTGAGCAAAACCAAGAAACAATCTATGTATTGCAATCCGCACA
7182928 ATGGAAATGTAAATGTTTAGATTGTGA
258 ATGGAAATGTAAATGTTTAGATTGTGA
*
7182955 AATTTCAACACAGGGATATAGTGATCAAAACACAAAATCTACCATATTCAAGAAATACACAAGTC
1 AATTTCAACACAGGGATATAGTGATCAAAACACAAAATCTACCATATTCAAGAAATACAAAAGTC
* * *
7183020 AATGATCCAAATACAACAACAAAACAGCATCAAGAATTGGGTTTTTGGTGCTGAATACAAGAAAA
66 AATGATCCAAACACAACAACAAAACAGCATCAAGAACTGGGTTTTGGGTGCTGAATACAAGAAAA
* * *** * * *
7183085 ATATGGATTTTATCAATTAATTTCAGCTAAATAAAAACAATAACCTGAACCCACCTAAGAAAATA
131 AAAAGGATCAAATCAATGAATTTCAACTAAATAAAAACAATAAACTGAACCCACCTAAGAAAATA
*
7183150 AGGCAATCTAATTGCAAAAGTGAGCAAAGCCAAGAAACAA
196 AGGCAATCTAATTGCAAAAGTGAGCAAAACCAAGAAACAA
7183190 AAGAAAAAGG
Statistics
Matches: 210, Mismatches: 22, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
282 3 0.01
283 4 0.02
284 200 0.95
285 3 0.01
ACGTcount: A:0.47, C:0.17, G:0.14, T:0.22
Consensus pattern (284 bp):
AATTTCAACACAGGGATATAGTGATCAAAACACAAAATCTACCATATTCAAGAAATACAAAAGTC
AATGATCCAAACACAACAACAAAACAGCATCAAGAACTGGGTTTTGGGTGCTGAATACAAGAAAA
AAAAGGATCAAATCAATGAATTTCAACTAAATAAAAACAATAAACTGAACCCACCTAAGAAAATA
AGGCAATCTAATTGCAAAAGTGAGCAAAACCAAGAAACAATCTATGTATTGCAATCCGCACAATG
GAAATGTAAATGTTTAGATTGTGA
Found at i:7187125 original size:20 final size:19
Alignment explanation
Indices: 7187100--7187149 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
7187090 TACAATTGTA
7187100 ATAAATACAACTGAATAATT
1 ATAAATACAA-TGAATAATT
* * *
7187120 ATAAATAGAATGATTTATT
1 ATAAATACAATGAATAATT
7187139 ATAATATACAA
1 ATAA-ATACAA
7187150 ATTGATTAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 11 0.44
20 14 0.56
ACGTcount: A:0.54, C:0.06, G:0.06, T:0.34
Consensus pattern (19 bp):
ATAAATACAATGAATAATT
Found at i:7194175 original size:45 final size:45
Alignment explanation
Indices: 7194121--7194234 Score: 210
Period size: 45 Copynumber: 2.5 Consensus size: 45
7194111 TTTGGTTCGC
* *
7194121 TGTATTGGAATAGAGGCGTAATGGCAAATCAATTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAATCAATTGTTTGGTTGAA
7194166 TGTAATGGAATAGAGGCGTAATAGCAAATCAATTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAATCAATTGTTTGGTTGAA
7194211 TGTAATGGAATAGAGGCGTAATAG
1 TGTAATGGAATAGAGGCGTAATAG
7194235 TTTTCTTGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
45 67 1.00
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.31
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCAAATCAATTGTTTGGTTGAA
Found at i:7194406 original size:28 final size:26
Alignment explanation
Indices: 7194375--7194426 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
7194365 ATTAATATCA
*
7194375 ATAATAAATAATTTAATTATATTTTAAC
1 ATAAT-AATAA-TTAAATATATTTTAAC
*
7194403 ATAATAATTATTAAATATATTTTA
1 ATAATAATAATTAAATATATTTTA
7194427 TTTAAAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 13 0.59
27 4 0.18
28 5 0.23
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (26 bp):
ATAATAATAATTAAATATATTTTAAC
Found at i:7194530 original size:117 final size:120
Alignment explanation
Indices: 7194392--7194627 Score: 381
Period size: 117 Copynumber: 2.0 Consensus size: 120
7194382 ATAATTTAAT
* *
7194392 TATATTTTAACATAATAATTATTAAATATATTTTATTTAAAATATATAATTTAATAAAATTCTTA
1 TATAATTTAACATAATAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTA
*
7194457 ATAATCAATATTATTATATGAATTT-CATATAAT-A-A-TATATGATACTATAAAA
66 ATAATCAATATTATTATATGAATTTAC-TAAAATCATAGTATATGATACTATAAAA
* *
7194509 TATAATTTAACATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTA
1 TATAATTTAACATAATAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTA
*
7194574 ATAATCAATATTCTTATATGAATTTACTAAAATCATAGTATATGATACTATAAA
66 ATAATCAATATTATTATATGAATTTACTAAAATCATAGTATATGATACTATAAA
7194628 TATTATTAAA
Statistics
Matches: 109, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
117 90 0.83
118 2 0.02
119 1 0.01
120 16 0.15
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (120 bp):
TATAATTTAACATAATAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTA
ATAATCAATATTATTATATGAATTTACTAAAATCATAGTATATGATACTATAAAA
Found at i:7194555 original size:18 final size:17
Alignment explanation
Indices: 7194532--7194568 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
7194522 AATTATTATT
7194532 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
7194548 AAATATATGATTTAATA
1 AAATATATGATTTAATA
7194565 AAAT
1 AAAT
7194569 TCTTAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:7194658 original size:18 final size:17
Alignment explanation
Indices: 7194635--7194671 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
7194625 AAATATTATT
7194635 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
7194651 AAATATATGATTTAATA
1 AAATATATGATTTAATA
7194668 AAAT
1 AAAT
7194672 TTAAAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:7194735 original size:103 final size:101
Alignment explanation
Indices: 7194520--7194784 Score: 269
Period size: 103 Copynumber: 2.6 Consensus size: 101
7194510 ATAATTTAAC
*
7194520 ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAATCAA-TA
1 ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAA-T-TTAACAA--AATTA
* * *
7194584 TT-CTTATATGAATTTACTAAAATCATAGTATATGATACT
62 TTACTTATATAAATTTACTAAAATAATAGTATATGATACA
*
7194623 ATAAATATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTTAA-AAAATTATTAC
1 ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTTAACAAAATTATTAC
* * * **
7194687 -TA-ATAAATTTTCTAATATGAATTTGTATAATTTTA-A
66 TTATATAAATTTACTAAAAT-AA-TAGTAT-ATGATACA
* * * *
7194723 ATAATTATTATTAAATATAATTTAA-TAATAATATATAATTTCAT--AATTTAACATAATTATTA
1 ATAATTATTATTAAATATATTTTAATTAA-AATATATGATTTAATAAAATTTAACAAAATTATTA
7194785 TTAAATATAT
Statistics
Matches: 141, Mismatches: 14, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
98 22 0.16
99 19 0.13
100 44 0.31
101 8 0.06
102 1 0.01
103 47 0.33
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.46
Consensus pattern (101 bp):
ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTTAACAAAATTATTAC
TTATATAAATTTACTAAAATAATAGTATATGATACA
Found at i:7194760 original size:18 final size:18
Alignment explanation
Indices: 7194737--7194820 Score: 59
Period size: 18 Copynumber: 4.8 Consensus size: 18
7194727 TTATTATTAA
7194737 ATATAATTTAATAATAAT
1 ATATAATTTAATAATAAT
* *
7194755 ATATAATTTCATAAT-TT
1 ATATAATTTAATAATAAT
* * *
7194772 AACATAA-TTATTATTAA-
1 -ATATAATTTAATAATAAT
*
7194789 ATATATTTTAATTAA-AAT
1 ATATAATTTAA-TAATAAT
*
7194807 ATATGATTTAATAA
1 ATATAATTTAATAA
7194821 AATTTAAAAT
Statistics
Matches: 48, Mismatches: 13, Indels: 11
0.67 0.18 0.15
Matches are distributed among these distances:
16 4 0.08
17 14 0.29
18 30 0.62
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.46
Consensus pattern (18 bp):
ATATAATTTAATAATAAT
Found at i:7194798 original size:152 final size:153
Alignment explanation
Indices: 7194623--7194921 Score: 555
Period size: 153 Copynumber: 2.0 Consensus size: 153
7194613 ATATGATACT
*
7194623 ATAAATATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTTAAAA-AATTATTAC
1 ATAAATATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTTAAAATAAATATTAC
*
7194687 TAATAAATTTTCTAATATGAATTTGTATAATTTTAAATAATTATTATTAAATATAATTTAATAAT
66 TAATAAATTTTCTAATATGAATTTGTATAATTTAAAATAATTATTATTAAATATAATTTAATAAT
7194752 AATATATAATTTCATAATTTAAC
131 AATATATAATTTCATAATTTAAC
*
7194775 ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTTAAAATAAATATTAC
1 ATAAATATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTTAAAATAAATATTAC
*
7194840 TAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTATTATTAAATATAATTTAATAAT
66 TAATAAATTTTCTAATATGAATTTGTATAATTTAAAATAATTATTATTAAATATAATTTAATAAT
7194905 AATATATAATTTCATAA
131 AATATATAATTTCATAA
7194922 AATTCTTGAT
Statistics
Matches: 142, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
152 54 0.38
153 88 0.62
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (153 bp):
ATAAATATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTTAAAATAAATATTAC
TAATAAATTTTCTAATATGAATTTGTATAATTTAAAATAATTATTATTAAATATAATTTAATAAT
AATATATAATTTCATAATTTAAC
Found at i:7194888 original size:101 final size:100
Alignment explanation
Indices: 7194765--7195032 Score: 340
Period size: 91 Copynumber: 2.7 Consensus size: 100
7194755 ATATAATTTC
* * * *
7194765 ATAATTTAACATAATTATTATTAAATATATTTTAATTAA-AATATATGATTTAATAAAATTTAAA
1 ATAATTTAAAATAATTATTATTAAATATAATTTAA-TAATAATATATAATTTCATAAAATTTAAA
*
7194829 ATAAATATTACTAATAAATTTTCTTATATGAATTTGT
65 ATAAATATTA-TAATAAATTTTCTTATATGAATTTAT
7194866 ATAATTTAAAATAATTATTATTAAATATAATTTAATAATAATATATAATTTCATAAAA--T----
1 ATAATTTAAAATAATTATTATTAAATATAATTTAATAATAATATATAATTTCATAAAATTTAAAA
* *
7194925 T--CT-TGATAATAAATTTTCTTATATGAATTTAT
66 TAAATATTATAATAAATTTTCTTATATGAATTTAT
* *
7194957 ATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTAA
1 ATAATTTAAAATAATTATTATTAAATATAATTTAATAATAATATATAATTTCATAAAA-T-TTAA
7195022 TAATAAATATT
64 -AATAAATATT
7195033 CTTATATGAA
Statistics
Matches: 143, Mismatches: 11, Indels: 24
0.80 0.06 0.13
Matches are distributed among these distances:
91 81 0.57
92 2 0.01
93 1 0.01
95 2 0.01
99 1 0.01
100 4 0.03
101 50 0.35
102 1 0.01
103 1 0.01
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46
Consensus pattern (100 bp):
ATAATTTAAAATAATTATTATTAAATATAATTTAATAATAATATATAATTTCATAAAATTTAAAA
TAAATATTATAATAAATTTTCTTATATGAATTTAT
Found at i:7194913 original size:44 final size:43
Alignment explanation
Indices: 7194865--7195007 Score: 139
Period size: 44 Copynumber: 3.2 Consensus size: 43
7194855 TATGAATTTG
7194865 TATAATTTAAAATAATTATTATTAAATATAATTTAATAATAATA
1 TATAATTTAAAATAATTATTATTAAATATAATTTAATAAT-ATA
* * * *
7194909 TATAATTTCATAA-AATTCTTGATAATAAAT-T-TTCTTATATGAATTTA
1 TATAATTT-AAAATAATTATT-AT--TAAATATAAT-TTA-AT-AATATA
*
7194956 TATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATA
1 TATAATTTAAAATAATTATTATTAAATATAATTTAATAAT-ATA
7195000 TATAATTT
1 TATAATTT
7195008 CATAAAATTC
Statistics
Matches: 79, Mismatches: 9, Indels: 22
0.72 0.08 0.20
Matches are distributed among these distances:
43 3 0.04
44 31 0.39
45 10 0.13
46 10 0.13
47 22 0.28
48 3 0.04
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (43 bp):
TATAATTTAAAATAATTATTATTAAATATAATTTAATAATATA
Found at i:7194936 original size:91 final size:91
Alignment explanation
Indices: 7194840--7195046 Score: 369
Period size: 91 Copynumber: 2.3 Consensus size: 91
7194830 TAAATATTAC
* *
7194840 TAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTATTATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
7194905 AATATATAATTTCATAAAATTCTTGA
66 AATATATAATTTCATAAAATTCTTAA
7194931 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
7194996 GATATATAATTTCATAAAATTCTTAA
66 AATATATAATTTCATAAAATTCTTAA
*
7195022 TAATAAATATTCTTATATGAATTTA
1 TAATAAATTTTCTTATATGAATTTA
7195047 CTAAAATCAT
Statistics
Matches: 111, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
91 111 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (91 bp):
TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
AATATATAATTTCATAAAATTCTTAA
Found at i:7195029 original size:47 final size:46
Alignment explanation
Indices: 7194887--7195031 Score: 156
Period size: 47 Copynumber: 3.2 Consensus size: 46
7194877 TAATTATTAT
*
7194887 TAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAA
1 TAAATATAATTTAATAAT-ATATATAATTTCATAAAATTCTTAATAA
* * ** *
7194934 TAAAT-T-TTCTTATATGAATTTATATAA-TT--TAAAATAATTAATAT
1 TAAATATAAT-TTA-AT-AATATATATAATTTCATAAAATTCTTAATAA
7194978 TAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAA
1 TAAATATAATTTAATAAT-ATATATAATTTCATAAAATTCTTAATAA
7195025 TAAATAT
1 TAAATAT
7195032 TCTTATATGA
Statistics
Matches: 78, Mismatches: 11, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
43 3 0.04
44 25 0.32
45 7 0.09
46 7 0.09
47 33 0.42
48 3 0.04
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (46 bp):
TAAATATAATTTAATAATATATATAATTTCATAAAATTCTTAATAA
Found at i:7202450 original size:28 final size:26
Alignment explanation
Indices: 7202397--7202446 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
7202387 ATTATAACTT
7202397 TTTTTTTATTTACCAAAATATATAAA
1 TTTTTTTATTTACCAAAATATATAAA
7202423 TTTTTTTATTTACCAAAATATATA
1 TTTTTTTATTTACCAAAATATATA
7202447 TAAAAAAACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (26 bp):
TTTTTTTATTTACCAAAATATATAAA
Found at i:7202706 original size:19 final size:21
Alignment explanation
Indices: 7202668--7202706 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
7202658 AATAACTGAT
*
7202668 TATATTGTTGTTATTATTTTG
1 TATATTGTTGTTAATATTTTG
7202689 TATATT-TTG-TAATATTTT
1 TATATTGTTGTTAATATTTT
7202707 TTGTTTTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 3 0.18
21 6 0.35
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.67
Consensus pattern (21 bp):
TATATTGTTGTTAATATTTTG
Found at i:7203016 original size:26 final size:26
Alignment explanation
Indices: 7202987--7203039 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
7202977 TTTTAGTGTG
*
7202987 TATTATTTTGAGTATAAAATTATTAA
1 TATTATTTTGAGTATAAAATTAATAA
7203013 TATTATTTTGAGTATAAAATTAATAA
1 TATTATTTTGAGTATAAAATTAATAA
7203039 T
1 T
7203040 TTTAGTGTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (26 bp):
TATTATTTTGAGTATAAAATTAATAA
Found at i:7203083 original size:26 final size:25
Alignment explanation
Indices: 7202985--7203084 Score: 82
Period size: 26 Copynumber: 4.0 Consensus size: 25
7202975 AATTTTAGTG
7202985 TGTATTATTTTGAGTATAAAATTATT
1 TGTATTATTTTGAGTATAAAATT-TT
**
7203011 AATATTATTTTGAGTATAAAA---T
1 TGTATTATTTTGAGTATAAAATTTT
* * * * *
7203033 T-AATAATTTTAGTGTGTAATATTTT
1 TGTATTATTTT-GAGTATAAAATTTT
7203058 GTGTATTATTTTGAGTATAAAATTTT
1 -TGTATTATTTTGAGTATAAAATTTT
7203084 T
1 T
7203085 TTAAGTAATT
Statistics
Matches: 55, Mismatches: 13, Indels: 13
0.68 0.16 0.16
Matches are distributed among these distances:
21 7 0.13
22 8 0.15
25 2 0.04
26 31 0.56
27 7 0.13
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (25 bp):
TGTATTATTTTGAGTATAAAATTTT
Found at i:7203908 original size:27 final size:27
Alignment explanation
Indices: 7203852--7203925 Score: 121
Period size: 27 Copynumber: 2.7 Consensus size: 27
7203842 AAAAATAAAA
* *
7203852 ATTTACCAAAATATTATAACTTTTTTTT
1 ATTTACCAAAATA-TATAAATTTTTATT
7203880 ATTTACCAAAATATATAAATTTTTATT
1 ATTTACCAAAATATATAAATTTTTATT
7203907 ATTTACCAAAATATATAAA
1 ATTTACCAAAATATATAAA
7203926 AAAATCAAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
27 31 0.70
28 13 0.30
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.46
Consensus pattern (27 bp):
ATTTACCAAAATATATAAATTTTTATT
Found at i:7204022 original size:27 final size:27
Alignment explanation
Indices: 7203992--7204058 Score: 107
Period size: 27 Copynumber: 2.5 Consensus size: 27
7203982 CGCCAATGGG
7203992 ATTGGCGGCACCAAAGGTGCCAAAACC
1 ATTGGCGGCACCAAAGGTGCCAAAACC
* *
7204019 ATTGGCGGCACCAATGGTGCCAATACC
1 ATTGGCGGCACCAAAGGTGCCAAAACC
*
7204046 ATTAGCGGCACCA
1 ATTGGCGGCACCA
7204059 GTTAATAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.30, C:0.30, G:0.25, T:0.15
Consensus pattern (27 bp):
ATTGGCGGCACCAAAGGTGCCAAAACC
Found at i:7204112 original size:4 final size:4
Alignment explanation
Indices: 7204103--7204252 Score: 105
Period size: 4 Copynumber: 37.0 Consensus size: 4
7204093 GAAGGAGAGG
* * * *
7204103 GAAA GAAA GAAA GAAA GAGA GAAA GAAA GGAA GAAA GGAGAT GGAA GAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA -GA-AA GAAA GAAA
* * *
7204153 G-AA -AAA GAAG GAAA GAAA GGGAAA G-GA GAAGA GAAA AAAA GAAA GAAA
1 GAAA GAAA GAAA GAAA GAAA --GAAA GAAA GAA-A GAAA GAAA GAAA GAAA
* *
7204201 G-AA G-AA GAAGA GAAG GAAAA GAGAA GAAA -AAA GAAA GAAA GAAG GAAA
1 GAAA GAAA GAA-A GAAA G-AAA GA-AA GAAA GAAA GAAA GAAA GAAA GAAA
7204249 GAAA
1 GAAA
7204253 AGGAAAAGGT
Statistics
Matches: 115, Mismatches: 18, Indels: 26
0.72 0.11 0.16
Matches are distributed among these distances:
3 15 0.13
4 77 0.67
5 18 0.16
6 5 0.04
ACGTcount: A:0.67, C:0.00, G:0.32, T:0.01
Consensus pattern (4 bp):
GAAA
Found at i:7204195 original size:44 final size:40
Alignment explanation
Indices: 7204103--7204260 Score: 132
Period size: 40 Copynumber: 3.9 Consensus size: 40
7204093 GAAGGAGAGG
* *
7204103 GAAAGAAAGAAAGAAAGAG-A-GAAAGAAAGGAAGAA-AGGA
1 GAAA-AAAGAAAGAAAAAGAAGGAAAGAAAGGAA-AAGAGAA
*** *
7204142 GATGGAAGAAAGAAAAAGAAGGAAAGAAAGGGAAAGGAGAAGA
1 GAAAAAAGAAAGAAAAAGAAGGAAAGAAA-GGAAAAGAG-A-A
7204185 GAAAAAAAGAAAGAAAGAAGAA-G-AAGAGAAGGAAAAGAGAA
1 G-AAAAAAGAAAGAAA-AAGAAGGAAAGA-AAGGAAAAGAGAA
7204226 GAAAAAAGAAAG--AAAGAAGGAAAGAAAAGGAAAAG
1 GAAAAAAGAAAGAAAAAGAAGGAAAG-AAAGGAAAAG
7204261 GTAATTTTAT
Statistics
Matches: 97, Mismatches: 10, Indels: 24
0.74 0.08 0.18
Matches are distributed among these distances:
37 5 0.05
38 14 0.14
39 15 0.15
40 21 0.22
41 8 0.08
42 1 0.01
43 14 0.14
44 14 0.14
45 5 0.05
ACGTcount: A:0.67, C:0.00, G:0.32, T:0.01
Consensus pattern (40 bp):
GAAAAAAGAAAGAAAAAGAAGGAAAGAAAGGAAAAGAGAA
Found at i:7204199 original size:48 final size:47
Alignment explanation
Indices: 7204147--7204258 Score: 126
Period size: 44 Copynumber: 2.4 Consensus size: 47
7204137 AAGGAGATGG
* *
7204147 AAGAAAGAAAAAGAAGGAAAGAAAGGGAAAGGAGAAGAGAAAA-AAAGA
1 AAGAAAGAAAAAGAAGGAAAG-AA-GGAAAAGAGAAGAAAAAAGAAAGA
*
7204195 AAGAAAGAAGAAGAA-G--AGAAGGAAAAGAGAAGAAAAAAGAAAGA
1 AAGAAAGAAAAAGAAGGAAAGAAGGAAAAGAGAAGAAAAAAGAAAGA
*
7204239 AAGAAGGAAAGAA-AAGGAAA
1 AAGAAAGAAA-AAGAAGGAAA
7204259 AGGTAATTTT
Statistics
Matches: 54, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
43 16 0.30
44 17 0.31
45 5 0.09
47 2 0.04
48 14 0.26
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (47 bp):
AAGAAAGAAAAAGAAGGAAAGAAGGAAAAGAGAAGAAAAAAGAAAGA
Found at i:7204201 original size:70 final size:73
Alignment explanation
Indices: 7204100--7204252 Score: 176
Period size: 70 Copynumber: 2.2 Consensus size: 73
7204090 GCAGAAGGAG
* * * *
7204100 AGGGAAAGAAAGAAAGAAAGAGAGAAAGAAAGGAAGAA-AGGAGATGG-AAGA-AAG-AAAAAGA
1 AGGGAAAGAAAGAAAGAAAAAAAGAAAGAAA-GAAGAAGAAGAGAAGGAAAGAGAAGAAAAAAGA
*
7204161 AGGAAAGAA
65 AAGAAAGAA
*
7204170 AGGGAAAG-GAGAAGAGAAAAAAAGAAAGAAAGAAGAAGAAGAGAAGGAAAAGAGAAGAAAAAAG
1 AGGGAAAGAAAGAA-AGAAAAAAAGAAAGAAAGAAGAAGAAGAGAAGG-AAAGAGAAGAAAAAAG
7204234 AAAGAAAG-A
64 AAAGAAAGAA
7204243 A-GGAAAGAAA
1 AGGGAAAGAAA
7204253 AGGAAAAGGT
Statistics
Matches: 69, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
69 10 0.14
70 30 0.43
72 10 0.14
73 6 0.09
74 13 0.19
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.01
Consensus pattern (73 bp):
AGGGAAAGAAAGAAAGAAAAAAAGAAAGAAAGAAGAAGAAGAGAAGGAAAGAGAAGAAAAAAGAA
AGAAAGAA
Found at i:7204228 original size:29 final size:29
Alignment explanation
Indices: 7204179--7204252 Score: 93
Period size: 29 Copynumber: 2.7 Consensus size: 29
7204169 AAGGGAAAGG
* *
7204179 AGAAGAGAA-AAAAAGAAAGAAAGAAG-A
1 AGAAGAGAAGGAAAAGAAAGAAAAAAGAA
7204206 AGAAGAGAAGGAAAAGAGAAGAAAAAAGAA
1 AGAAGAGAAGGAAAAGA-AAGAAAAAAGAA
7204236 AGAA-AGAAGG-AAAGAAA
1 AGAAGAGAAGGAAAAGAAA
7204253 AGGAAAAGGT
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 11 0.26
28 11 0.26
29 15 0.36
30 5 0.12
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (29 bp):
AGAAGAGAAGGAAAAGAAAGAAAAAAGAA
Found at i:7204231 original size:11 final size:11
Alignment explanation
Indices: 7204178--7204253 Score: 54
Period size: 11 Copynumber: 6.9 Consensus size: 11
7204168 AAAGGGAAAG
7204178 GAGAAGAGAAAA
1 GAGAAGA-AAAA
7204190 -A-AAGAAAGAA
1 GAGAAGAAA-AA
*
7204200 -AGAAGAAGAA
1 GAGAAGAAAAA
*
7204210 GAGAAGGAAAA
1 GAGAAGAAAAA
7204221 GAGAAGAAAAA
1 GAGAAGAAAAA
7204232 -AGAAAGAAAGAA
1 GAG-AAGAAA-AA
7204244 G-GAAAGAAAA
1 GAG-AAGAAAA
7204254 GGAAAAGGTA
Statistics
Matches: 54, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
9 2 0.04
10 11 0.20
11 31 0.57
12 10 0.19
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (11 bp):
GAGAAGAAAAA
Found at i:7205530 original size:4 final size:4
Alignment explanation
Indices: 7205514--7205663 Score: 105
Period size: 4 Copynumber: 37.0 Consensus size: 4
7205504 ACCTTTTCCT
* *
7205514 TTTC TTTC CTTC TTTC TTTC TTT- TTTC TTCTC TTTTC CTTC TCTTC -TTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT-TC -TTTC TTTC T-TTC TTTC
* * *
7205563 -TTC TTTC TTTC TTTT TTTC TCTTC -TCC TTTCCC TTTC TTTC CTTC -TT-
1 TTTC TTTC TTTC TTTC TTTC T-TTC TTTC TTT--C TTTC TTTC TTTC TTTC
* * * *
7205610 TTTC TTTC TTCCC TCTCC TTTC TTCC TTTC TTTC TCTC TTTC TTTC TTTC
1 TTTC TTTC TT-TC T-TTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
7205660 TTTC
1 TTTC
7205664 CCTCTCCTTC
Statistics
Matches: 118, Mismatches: 15, Indels: 26
0.74 0.09 0.16
Matches are distributed among these distances:
3 15 0.13
4 81 0.69
5 15 0.13
6 7 0.06
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (4 bp):
TTTC
Found at i:7205550 original size:29 final size:28
Alignment explanation
Indices: 7205514--7205658 Score: 92
Period size: 29 Copynumber: 5.2 Consensus size: 28
7205504 ACCTTTTCCT
*
7205514 TTTC-TTTCCTTCT-TTCTTTCTTTTTTC
1 TTTCTTTTCCTTCTCTTC-TTCTTCTTTC
7205541 TTCTCTTTTCCTTCTCTTCTTCTTCTTTC
1 TT-TCTTTTCCTTCTCTTCTTCTTCTTTC
* * **
7205570 TTTCTTTT-TTTCTCTTCTCCTT-TCCC
1 TTTCTTTTCCTTCTCTTCTTCTTCTTTC
*
7205596 TTTC-TTTCCTTCT-TT-TTCTTTCTTCCC
1 TTTCTTTTCCTTCTCTTCTTC-TTCTT-TC
* *
7205623 TCTCCTTT-CTTC-CTTTCTTTCTCTCTTTC
1 TTTCTTTTCCTTCTC-TTC-TTCT-TCTTTC
7205652 TTTCTTT
1 TTTCTTT
7205659 CTTTCCCTCT
Statistics
Matches: 93, Mismatches: 12, Indels: 24
0.72 0.09 0.19
Matches are distributed among these distances:
24 2 0.02
25 7 0.08
26 11 0.12
27 23 0.25
28 13 0.14
29 27 0.29
30 10 0.11
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (28 bp):
TTTCTTTTCCTTCTCTTCTTCTTCTTTC
Found at i:7205614 original size:44 final size:42
Alignment explanation
Indices: 7205508--7205619 Score: 128
Period size: 44 Copynumber: 2.7 Consensus size: 42
7205498 AAAATTACCT
*
7205508 TTTCCTTTTCTTTCCTTC--TTTCTTTC--TTTTTTCTTCTC
1 TTTCCCTTTCTTTCCTTCTTTTTCTTTCTTTTTTTTCTTCTC
*
7205546 TTTTCC-TTCTCTT-CTTCTTCTTTCTTTCTTTTTTTCTCTTCTCC
1 TTTCCCTTTCT-TTCCTTCTT-TTTCTTTCTTTTTTT-TCTTCT-C
7205590 TTTCCCTTTCTTTCCTTCTTTTTCTTTCTT
1 TTTCCCTTTCTTTCCTTCTTTTTCTTTCTT
7205620 CCCTCTCCTT
Statistics
Matches: 61, Mismatches: 3, Indels: 14
0.78 0.04 0.18
Matches are distributed among these distances:
37 8 0.13
38 6 0.10
40 8 0.13
42 5 0.08
43 6 0.10
44 18 0.30
45 10 0.16
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (42 bp):
TTTCCCTTTCTTTCCTTCTTTTTCTTTCTTTTTTTTCTTCTC
Found at i:7205639 original size:70 final size:73
Alignment explanation
Indices: 7205523--7205666 Score: 172
Period size: 70 Copynumber: 2.0 Consensus size: 73
7205513 TTTTCTTTCC
* * * * *
7205523 TTCTTTCTTTCTTTTTTCTTCTCTTTTCCTTCTCTTCTTCTTCTTTCTTTCTTTTTTTCTCTTC-
1 TTCTTTCCTTCTTTTTTCTTCTC-TTTCCCTCTCCTCTTCTTCTTTCTTTCTCTCTTTCT-TTCT
7205587 TCCTTTCCCT
64 TCCTTTCCCT
7205597 TTCTTTCCTTC-TTTTTCTT-TC-TTCCCTCTCCT-TTCTTCCTTTCTTTCTCTCTTTCTTTCTT
1 TTCTTTCCTTCTTTTTTCTTCTCTTTCCCTCTCCTCTTCTT-CTTTCTTTCTCTCTTTCTTTCTT
*
7205658 TCTTTCCCT
65 CCTTTCCCT
7205667 CTCCTTCTGC
Statistics
Matches: 62, Mismatches: 6, Indels: 8
0.82 0.08 0.11
Matches are distributed among these distances:
69 8 0.13
70 34 0.55
72 2 0.03
73 8 0.13
74 10 0.16
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (73 bp):
TTCTTTCCTTCTTTTTTCTTCTCTTTCCCTCTCCTCTTCTTCTTTCTTTCTCTCTTTCTTTCTTC
CTTTCCCT
Found at i:7205832 original size:26 final size:26
Alignment explanation
Indices: 7205802--7205873 Score: 117
Period size: 26 Copynumber: 2.7 Consensus size: 26
7205792 TACAGATTTT
7205802 TTTATATATTTTGGTAAATAAAAAAA
1 TTTATATATTTTGGTAAATAAAAAAA
7205828 TTTATATATTTTGGTAAATAAAAAAA
1 TTTATATATTTTGGTAAATAAAAAAA
* *
7205854 GTTATAATATTTTAGTAAAT
1 TTTAT-ATATTTTGGTAAAT
7205874 TTTTATTTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
26 30 0.70
27 13 0.30
ACGTcount: A:0.47, C:0.00, G:0.08, T:0.44
Consensus pattern (26 bp):
TTTATATATTTTGGTAAATAAAAAAA
Found at i:7209428 original size:21 final size:21
Alignment explanation
Indices: 7209402--7209456 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
7209392 ACAGCGGTGG
*
7209402 CGGTGAGATTAGTTACTGTAA
1 CGGTGAGATTAGATACTGTAA
*
7209423 CGGTGAGATTAGATACTGTAG
1 CGGTGAGATTAGATACTGTAA
7209444 CGGTGAGATTAGA
1 CGGTGAGATTAGA
7209457 AACAATGGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (21 bp):
CGGTGAGATTAGATACTGTAA
Found at i:7215525 original size:44 final size:44
Alignment explanation
Indices: 7215431--7215550 Score: 136
Period size: 44 Copynumber: 2.7 Consensus size: 44
7215421 TTGATGCGAT
* * * *
7215431 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGAT-TATGACTTCAATC
* *
7215476 C-GCTCCACTACAACTTCAGGGAGATAGGATTATCGACTTCAA-C
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATTAT-GACTTCAATC
* *
7215519 CTGCTCCACTGCAACCTGAGGGAGATAAGATT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATT
7215551 TGCTTCTTCA
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
43 5 0.08
44 57 0.90
45 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (44 bp):
CTGCTCCACTGCAACTTCAGGGAGATAAGATTATGACTTCAATC
Found at i:7215590 original size:44 final size:42
Alignment explanation
Indices: 7215519--7215685 Score: 118
Period size: 44 Copynumber: 3.8 Consensus size: 42
7215509 CGACTTCAAC
** * *
7215519 CTGCTCCACTGCAACCTGAGGGAGATAAGATTTGCTTCTTCAGT
1 CTGCTCCACTGTGACTTCAGGGAGATAAGA-TTG-TTCTTCAGT
* * *
7215563 CTGCCCCACTGTGACTTCAGGGGGATAAGACTTGTTTTCTCAGT
1 CTGCTCCACTGTGACTTCAGGGAGATAAGA-TTGTTCT-TCAGT
* * *** * * *
7215607 CTGCTTCGCTACAACTTTAGGGAGATAGGATTGATTTCTTCTGT
1 CTGCTCCACTGTGACTTCAGGGAGATAAGATTG--TTCTTCAGT
* *
7215651 TTGCTCCACTGTGACTTCAGGGGGATAAGACTTGT
1 CTGCTCCACTGTGACTTCAGGGAGATAAGA-TTGT
7215686 AATTTCCAAC
Statistics
Matches: 91, Mismatches: 28, Indels: 9
0.71 0.22 0.07
Matches are distributed among these distances:
43 7 0.08
44 78 0.86
45 6 0.07
ACGTcount: A:0.20, C:0.22, G:0.25, T:0.33
Consensus pattern (42 bp):
CTGCTCCACTGTGACTTCAGGGAGATAAGATTGTTCTTCAGT
Found at i:7215611 original size:88 final size:88
Alignment explanation
Indices: 7215519--7215685 Score: 228
Period size: 88 Copynumber: 1.9 Consensus size: 88
7215509 CGACTTCAAC
*
7215519 CTGCTCCACTGCAACCTGAGGGAGATAAGATTTG-CTTCTTCAGTCTGCCCCACTGTGACTTCAG
1 CTGCTCCACTACAACCTGAGGGAGATAAGA-TTGACTTCTTCAGTCTGCCCCACTGTGACTTCAG
7215583 GGGGATAAGACTTGTTTTCTCAGT
65 GGGGATAAGACTTGTTTTCTCAGT
* * * * * * * * *
7215607 CTGCTTCGCTACAACTTTAGGGAGATAGGATTGATTTCTTCTGTTTGCTCCACTGTGACTTCAGG
1 CTGCTCCACTACAACCTGAGGGAGATAAGATTGACTTCTTCAGTCTGCCCCACTGTGACTTCAGG
7215672 GGGATAAGACTTGT
66 GGGATAAGACTTGT
7215686 AATTTCCAAC
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
87 3 0.04
88 65 0.96
ACGTcount: A:0.20, C:0.22, G:0.25, T:0.33
Consensus pattern (88 bp):
CTGCTCCACTACAACCTGAGGGAGATAAGATTGACTTCTTCAGTCTGCCCCACTGTGACTTCAGG
GGGATAAGACTTGTTTTCTCAGT
Found at i:7215955 original size:88 final size:88
Alignment explanation
Indices: 7215800--7216260 Score: 721
Period size: 88 Copynumber: 5.3 Consensus size: 88
7215790 GTTGGTGCTT
7215800 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCC-ACTGCAACCGATGGAGGCAAGGCTTTGTTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCAACTGCAACCGATGGAGGCAAGGCTTTGTTT
*
7215864 TCGATATGCTTCGCTGTTAACGC
66 TCGATCTGCTTCGCTGTTAACGC
*
7215887 AGGAAGGCAAGATCTGTTATCTTTAACCAGCTCCAACTGCAACCGATGGAGGCAAGGCTTTGTTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCAACTGCAACCGATGGAGGCAAGGCTTTGTTT
*
7215952 TCGATTTGCTTCGCTGTTAACGC
66 TCGATCTGCTTCGCTGTTAACGC
* * *
7215975 AGGAAAGCAAGATCTGCTATCTTTAAACAGCTCCAACTACAACCGATGGAGGCAAGGCTTTGTTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCAACTGCAACCGATGGAGGCAAGGCTTTGTTT
* *
7216040 TTGATCTGCTTCACTGTTAACGC
66 TCGATCTGCTTCGCTGTTAACGC
* *
7216063 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCC-ACTGCAACCAATGGAGGCAATGCTTTGTTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCAACTGCAACCGATGGAGGCAAGGCTTTGTTT
** * *
7216127 TTTATTTGTTTCGCTGTTAACGC
66 TCGATCTGCTTCGCTGTTAACGC
* * *
7216150 AGGAAGCCAAGATCTGCTATCTTTAACCAGCTCCAACTGTC-GCCGATGGAGGTAAGGCTTTGTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCAACTG-CAACCGATGGAGGCAAGGCTTTGTT
* *
7216214 TTCAATCTGCTTTGCTGTTAACGC
65 TTCGATCTGCTTCGCTGTTAACGC
7216238 AGGAAGGCAAGATCTGCTATCTT
1 AGGAAGGCAAGATCTGCTATCTT
7216261 CATTGATCTG
Statistics
Matches: 342, Mismatches: 29, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
87 112 0.33
88 229 0.67
89 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (88 bp):
AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCAACTGCAACCGATGGAGGCAAGGCTTTGTTT
TCGATCTGCTTCGCTGTTAACGC
Found at i:7216124 original size:175 final size:176
Alignment explanation
Indices: 7215800--7216260 Score: 723
Period size: 175 Copynumber: 2.6 Consensus size: 176
7215790 GTTGGTGCTT
* *
7215800 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCC-ACTGCAACCGATGGAGGCAAGGCTTTGTTT
1 AGGAAAGCAAGATCTGCTATCTTTAACCAGCTCCAACTACAACCGATGGAGGCAAGGCTTTGTTT
* *
7215864 TCGATATGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGTTATCTTTAACCAGCTCCAACTGCAA
66 TCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCAACTGCAA
*
7215929 CCGATGGAGGCAAGGCTTTGTTTTCGATTTGCTTCGCTGTTAACGC
131 CCAATGGAGGCAAGGCTTTGTTTTCGATTTGCTTCGCTGTTAACGC
*
7215975 AGGAAAGCAAGATCTGCTATCTTTAAACAGCTCCAACTACAACCGATGGAGGCAAGGCTTTGTTT
1 AGGAAAGCAAGATCTGCTATCTTTAACCAGCTCCAACTACAACCGATGGAGGCAAGGCTTTGTTT
* *
7216040 TTGATCTGCTTCACTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCC-ACTGCAA
66 TCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCAACTGCAA
* ** *
7216104 CCAATGGAGGCAATGCTTTGTTTTTTATTTGTTTCGCTGTTAACGC
131 CCAATGGAGGCAAGGCTTTGTTTTCGATTTGCTTCGCTGTTAACGC
* * *
7216150 AGG-AAGCCAAGATCTGCTATCTTTAACCAGCTCCAACTGTC-GCCGATGGAGGTAAGGCTTTGT
1 AGGAAAG-CAAGATCTGCTATCTTTAACCAGCTCCAACT-ACAACCGATGGAGGCAAGGCTTTGT
* *
7216213 TTTCAATCTGCTTTGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTT
64 TTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTT
7216261 CATTGATCTG
Statistics
Matches: 263, Mismatches: 20, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
174 3 0.01
175 177 0.67
176 83 0.32
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (176 bp):
AGGAAAGCAAGATCTGCTATCTTTAACCAGCTCCAACTACAACCGATGGAGGCAAGGCTTTGTTT
TCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCAACTGCAA
CCAATGGAGGCAAGGCTTTGTTTTCGATTTGCTTCGCTGTTAACGC
Found at i:7217923 original size:28 final size:28
Alignment explanation
Indices: 7217891--7217950 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 28
7217881 TCTTTTTATC
7217891 TTTTCATATTTT-ATTTTGACTTTGATTT
1 TTTTC-TATTTTGATTTTGACTTTGATTT
* *
7217919 TTTTCTTTTTTGCTTTTGACTTTGATTT
1 TTTTCTATTTTGATTTTGACTTTGATTT
7217947 TTTT
1 TTTT
7217951 TTTGAATGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 5 0.17
28 24 0.83
ACGTcount: A:0.12, C:0.08, G:0.08, T:0.72
Consensus pattern (28 bp):
TTTTCTATTTTGATTTTGACTTTGATTT
Found at i:7222932 original size:27 final size:25
Alignment explanation
Indices: 7222902--7222967 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 25
7222892 GTATAAGATG
7222902 ATTTTAAAATAATTATTATATAAAACA
1 ATTTTAAAATAATTA-TATA-AAAACA
* *
7222929 ATTTGGAATAA-AACTATATAAAAACA
1 ATTT-TAA-AATAATTATATAAAAACA
7222955 ATTTTAAAATAAT
1 ATTTTAAAATAAT
7222968 ATGTAGTAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
24 2 0.06
25 4 0.12
26 10 0.31
27 8 0.25
28 6 0.19
29 2 0.06
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (25 bp):
ATTTTAAAATAATTATATAAAAACA
Found at i:7224610 original size:31 final size:31
Alignment explanation
Indices: 7224544--7224691 Score: 248
Period size: 31 Copynumber: 4.9 Consensus size: 31
7224534 GAATATAAAT
*
7224544 TATATTTTTTATTTTTAAAACACACTAC--A
1 TATATTTTTTATTTTTAAAATACACTACATA
7224573 TATATTTTTTATTTTTAAAATACACTACATA
1 TATATTTTTTATTTTTAAAATACACTACATA
7224604 TATA-TTTTTATTTTTAAAATACACTACATA
1 TATATTTTTTATTTTTAAAATACACTACATA
*
7224634 TATTTTTTTTATTTTTAAAATACACTACATA
1 TATATTTTTTATTTTTAAAATACACTACATA
*
7224665 TATATTTTTTATTTTTAAAGTACACTA
1 TATATTTTTTATTTTTAAAATACACTA
7224692 ATACATGTAT
Statistics
Matches: 112, Mismatches: 4, Indels: 4
0.93 0.03 0.03
Matches are distributed among these distances:
29 27 0.24
30 29 0.26
31 56 0.50
ACGTcount: A:0.37, C:0.10, G:0.01, T:0.52
Consensus pattern (31 bp):
TATATTTTTTATTTTTAAAATACACTACATA
Found at i:7224705 original size:61 final size:60
Alignment explanation
Indices: 7224544--7224691 Score: 253
Period size: 61 Copynumber: 2.5 Consensus size: 60
7224534 GAATATAAAT
*
7224544 TATATTTTTTATTTTTAAAACACACTACATATATTTTTTATTTTTAAAATACACTACATA
1 TATATTTTTTATTTTTAAAATACACTACATATATTTTTTATTTTTAAAATACACTACATA
7224604 TATA-TTTTTATTTTTAAAATACACTACATATATTTTTTTTATTTTTAAAATACACTACATA
1 TATATTTTTTATTTTTAAAATACACTACATATA--TTTTTTATTTTTAAAATACACTACATA
*
7224665 TATATTTTTTATTTTTAAAGTACACTA
1 TATATTTTTTATTTTTAAAATACACTA
7224692 ATACATGTAT
Statistics
Matches: 83, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
59 27 0.33
60 4 0.05
61 31 0.37
62 21 0.25
ACGTcount: A:0.37, C:0.10, G:0.01, T:0.52
Consensus pattern (60 bp):
TATATTTTTTATTTTTAAAATACACTACATATATTTTTTATTTTTAAAATACACTACATA
Found at i:7225245 original size:24 final size:23
Alignment explanation
Indices: 7225218--7225298 Score: 99
Period size: 24 Copynumber: 3.2 Consensus size: 23
7225208 TGTATCTTTC
7225218 ATTTAAATAATTAATTACCTATCT
1 ATTTAAATAATTAATTACCTAT-T
7225242 ATTTAAATAATTAATTACCTAAAAATT
1 ATTTAAATAATTAATTACCT----ATT
7225269 AATTTAAATAATTAATTACCTATTT
1 -ATTTAAATAATTAATTACCTA-TT
7225294 ATTTA
1 ATTTA
7225299 TTTGTTTATT
Statistics
Matches: 51, Mismatches: 0, Indels: 12
0.81 0.00 0.19
Matches are distributed among these distances:
24 26 0.51
25 2 0.04
27 1 0.02
28 22 0.43
ACGTcount: A:0.46, C:0.09, G:0.00, T:0.46
Consensus pattern (23 bp):
ATTTAAATAATTAATTACCTATT
Found at i:7225283 original size:13 final size:13
Alignment explanation
Indices: 7225242--7225285 Score: 54
Period size: 13 Copynumber: 3.2 Consensus size: 13
7225232 TTACCTATCT
7225242 ATTTAAATAATTA
1 ATTTAAATAATTA
7225255 ATTACCTAAA-AATTA
1 ATT---TAAATAATTA
7225270 ATTTAAATAATTA
1 ATTTAAATAATTA
7225283 ATT
1 ATT
7225286 ACCTATTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
12 4 0.15
13 11 0.41
15 8 0.30
16 4 0.15
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (13 bp):
ATTTAAATAATTA
Found at i:7225301 original size:28 final size:26
Alignment explanation
Indices: 7225218--7225301 Score: 91
Period size: 28 Copynumber: 3.2 Consensus size: 26
7225208 TGTATCTTTC
*
7225218 ATTTAAATAATTAATTACC--TATCT
1 ATTTAAATAATTAATTACCTATATTT
* *
7225242 ATTTAAATAATTAATTACCTAAAAATTA
1 ATTTAAATAATTAATTACCT--ATATTT
7225270 ATTTAAATAATTAATTACCTATTTATTT
1 ATTTAAATAATTAATTACCTA--TATTT
7225298 ATTT
1 ATTT
7225302 GTTTATTTAT
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
24 19 0.39
26 1 0.02
28 29 0.59
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (26 bp):
ATTTAAATAATTAATTACCTATATTT
Found at i:7225757 original size:19 final size:19
Alignment explanation
Indices: 7225700--7225759 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 19
7225690 CCTCAATCCC
*
7225700 TAACCCCTAAATCTCCC--
1 TAACCCCTAAATCCCCCTA
*
7225717 TAACCCCT-AA-CCCCGATCA
1 TAACCCCTAAATCCCC-CT-A
7225736 TAACCCCTAAATCCCCCTA
1 TAACCCCTAAATCCCCCTA
7225755 TAACC
1 TAACC
7225760 AGTAAAGCAT
Statistics
Matches: 34, Mismatches: 3, Indels: 10
0.72 0.06 0.21
Matches are distributed among these distances:
15 3 0.09
16 2 0.06
17 8 0.24
19 14 0.41
20 3 0.09
21 4 0.12
ACGTcount: A:0.32, C:0.47, G:0.02, T:0.20
Consensus pattern (19 bp):
TAACCCCTAAATCCCCCTA
Found at i:7226425 original size:23 final size:24
Alignment explanation
Indices: 7226384--7226431 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
7226374 ACACCGCTAC
*
7226384 TGCTTGATCTTTAGCGGCA-TTTT
1 TGCTTGATCTTTAACGGCACTTTT
* *
7226407 TGCTTGATTTTTAATGGCACTTTT
1 TGCTTGATCTTTAACGGCACTTTT
7226431 T
1 T
7226432 ATCAAAATAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 16 0.76
24 5 0.24
ACGTcount: A:0.15, C:0.15, G:0.19, T:0.52
Consensus pattern (24 bp):
TGCTTGATCTTTAACGGCACTTTT
Found at i:7226604 original size:60 final size:62
Alignment explanation
Indices: 7226510--7226630 Score: 203
Period size: 60 Copynumber: 2.0 Consensus size: 62
7226500 CACTAATGCA
7226510 ATTTCCCCATTCCCATTTCCCTTCTTCCACCGATCAAA-CCCAAACCCCGTGCCCTCCTCCC
1 ATTTCCCCATTCCCATTTCCCTTCTTCCACCGATCAAAGCCCAAACCCCGTGCCCTCCTCCC
7226571 ATTT-CCCATTCCCATTTCTCC-TCTTCCACCGATCAAAGTCCCAAACCCCGTGCCCTCCTC
1 ATTTCCCCATTCCCATTTC-CCTTCTTCCACCGATCAAAG-CCCAAACCCCGTGCCCTCCTC
7226631 TGATCAAAGC
Statistics
Matches: 57, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
60 30 0.53
61 6 0.11
62 21 0.37
ACGTcount: A:0.18, C:0.49, G:0.06, T:0.27
Consensus pattern (62 bp):
ATTTCCCCATTCCCATTTCCCTTCTTCCACCGATCAAAGCCCAAACCCCGTGCCCTCCTCCC
Found at i:7226913 original size:23 final size:22
Alignment explanation
Indices: 7226881--7226923 Score: 77
Period size: 23 Copynumber: 1.9 Consensus size: 22
7226871 GCAAATTCCC
7226881 ATTTTTGTTTGATCATTTGGGT
1 ATTTTTGTTTGATCATTTGGGT
7226903 ATTTTTCGTTTGATCATTTGG
1 ATTTTT-GTTTGATCATTTGG
7226924 ATATCTATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.14, C:0.07, G:0.21, T:0.58
Consensus pattern (22 bp):
ATTTTTGTTTGATCATTTGGGT
Found at i:7230023 original size:21 final size:22
Alignment explanation
Indices: 7229987--7230071 Score: 111
Period size: 21 Copynumber: 4.0 Consensus size: 22
7229977 CCAAGAACAA
*
7229987 AGCAAAAAAGAGGGGAGAAACC
1 AGCAAAAACGAGGGGAGAAACC
*
7230009 AGCAAAAACGA-GGGACAAACC
1 AGCAAAAACGAGGGGAGAAACC
* *
7230030 AGCAAGAAC-AAGGGAGAAACC
1 AGCAAAAACGAGGGGAGAAACC
*
7230051 AGCAAGAACGAGGGGAGAAAC
1 AGCAAAAACGAGGGGAGAAAC
7230072 TGTTGTTTTG
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
20 1 0.02
21 35 0.62
22 20 0.36
ACGTcount: A:0.52, C:0.18, G:0.31, T:0.00
Consensus pattern (22 bp):
AGCAAAAACGAGGGGAGAAACC
Found at i:7231847 original size:16 final size:16
Alignment explanation
Indices: 7231828--7231859 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7231818 ATCATTATCG
*
7231828 TTTTAGATCATTTTGA
1 TTTTAGATAATTTTGA
7231844 TTTTAGATAATTTTGA
1 TTTTAGATAATTTTGA
7231860 GTTCGAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.03, G:0.12, T:0.56
Consensus pattern (16 bp):
TTTTAGATAATTTTGA
Found at i:7239610 original size:28 final size:28
Alignment explanation
Indices: 7239542--7239663 Score: 111
Period size: 28 Copynumber: 4.4 Consensus size: 28
7239532 ATACAACATG
* * * *
7239542 CAGTAGCAGTCTGGGCCTGAGCCCTATA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
**
7239570 CAACAAC-GATGTGGGCCTTAGCCCAATA
1 CAGTAACAG-TGTGGGCCTTAGCCCAATA
* * * *
7239598 TAGTAACAGTGTGCGCATGAGCCCAATA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
* * *
7239626 CAGTAACAATGTGGGCCTTAGCCTATTA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
7239654 CAGTAACAGT
1 CAGTAACAGT
7239664 ACAATGCAGT
Statistics
Matches: 72, Mismatches: 20, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
27 1 0.01
28 70 0.97
29 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.24, T:0.22
Consensus pattern (28 bp):
CAGTAACAGTGTGGGCCTTAGCCCAATA
Found at i:7239804 original size:26 final size:26
Alignment explanation
Indices: 7239775--7239845 Score: 88
Period size: 26 Copynumber: 2.7 Consensus size: 26
7239765 ATATCGCAGT
* * *
7239775 AAAGCTGCCAGTAATAGTGATGCAAC
1 AAAGCTACCAGTAATAGTAACGCAAC
* *
7239801 AAAGCTACCAGTAACAGTAACGCAGC
1 AAAGCTACCAGTAATAGTAACGCAAC
*
7239827 AAAGCTTCCAGTAATAGTA
1 AAAGCTACCAGTAATAGTA
7239846 TATGTGGCAA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.41, C:0.21, G:0.20, T:0.18
Consensus pattern (26 bp):
AAAGCTACCAGTAATAGTAACGCAAC
Found at i:7240041 original size:27 final size:27
Alignment explanation
Indices: 7240018--7240216 Score: 193
Period size: 27 Copynumber: 7.4 Consensus size: 27
7240008 AGAGGTATAA
*
7240018 CAGTCATTTTACTCTTCGGGGGTATTT
1 CAGTCATTTTACCCTTCGGGGGTATTT
* * *
7240045 CGGTCATTTTACCCTCCGAGGGTATTT
1 CAGTCATTTTACCCTTCGGGGGTATTT
* * * *
7240072 CAATCATTTTACCCTCCAGGAGTATTT
1 CAGTCATTTTACCCTTCGGGGGTATTT
* * * *
7240099 CGGTCATTTTACCTTTTGGGAGTATTT
1 CAGTCATTTTACCCTTCGGGGGTATTT
**
7240126 CAGTCATTTTACCCTTCAAGGGTATTT
1 CAGTCATTTTACCCTTCGGGGGTATTT
* * ** **
7240153 CGGTCATTTTACTCTTCAAGAATATTT
1 CAGTCATTTTACCCTTCGGGGGTATTT
* *
7240180 CGGTCA-TTTACCCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGGGGGTATTT
7240206 CAGTCATTTTA
1 CAGTCATTTTA
7240217 GGCCCATTAA
Statistics
Matches: 141, Mismatches: 30, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
26 21 0.15
27 120 0.85
ACGTcount: A:0.20, C:0.21, G:0.18, T:0.42
Consensus pattern (27 bp):
CAGTCATTTTACCCTTCGGGGGTATTT
Found at i:7240079 original size:54 final size:54
Alignment explanation
Indices: 7240018--7240216 Score: 224
Period size: 54 Copynumber: 3.7 Consensus size: 54
7240008 AGAGGTATAA
* ** *
7240018 CAGTCATTTTACTCTTCGGGGGTATTTCGGTCATTTTACCCTCCGAGGGTATTT
1 CAGTCATTTTACCCTTCAAGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTT
* * * *
7240072 CAATCATTTTACCC-TCCAGGAGTATTTCGGTCATTTTACCTTTTG-GGAGTATTT
1 CAGTCATTTTACCCTTCAAGG-GTATTTCGGTCATTTTACCCTTCGAGG-GTATTT
* * **
7240126 CAGTCATTTTACCCTTCAAGGGTATTTCGGTCATTTTACTCTTCAAGAATATTT
1 CAGTCATTTTACCCTTCAAGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTT
* * *
7240180 CGGTCA-TTTACCCTTCGAGGGTATTTCAGTCATTTTA
1 CAGTCATTTTACCCTTCAAGGGTATTTCGGTCATTTTA
7240217 GGCCCATTAA
Statistics
Matches: 123, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
53 35 0.28
54 82 0.67
55 6 0.05
ACGTcount: A:0.20, C:0.21, G:0.18, T:0.42
Consensus pattern (54 bp):
CAGTCATTTTACCCTTCAAGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTT
Found at i:7240133 original size:81 final size:80
Alignment explanation
Indices: 7240020--7240216 Score: 245
Period size: 81 Copynumber: 2.4 Consensus size: 80
7240010 AGGTATAACA
* *
7240020 GTCATTTTA-CTCTTCGGGGGTATTTCGGTCATTTTACCCTCCGAGGGTATTTCAATCATTTTAC
1 GTCATTTTACCT-TTC-GGGGTATTTCAGTCATTTTACCCTCCAAGGGTATTTCAATCATTTTAC
* *
7240084 CCTCCAGGAGTATTTCG
64 CCTCCAAGAATATTTCG
* * ** *
7240101 GTCATTTTACCTTTTGGGAGTATTTCAGTCATTTTACCCTTCAAGGGTATTTCGGTCATTTTACT
1 GTCATTTTACCTTTCGGG-GTATTTCAGTCATTTTACCCTCCAAGGGTATTTCAATCATTTTACC
*
7240166 CTTCAAGAATATTTCG
65 CTCCAAGAATATTTCG
*
7240182 GTCA-TTTACCCTTCGAGGGTATTTCAGTCATTTTA
1 GTCATTTTACCTTTCG-GGGTATTTCAGTCATTTTA
7240217 GGCCCATTAA
Statistics
Matches: 101, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
80 29 0.29
81 70 0.69
82 2 0.02
ACGTcount: A:0.19, C:0.21, G:0.18, T:0.42
Consensus pattern (80 bp):
GTCATTTTACCTTTCGGGGTATTTCAGTCATTTTACCCTCCAAGGGTATTTCAATCATTTTACCC
TCCAAGAATATTTCG
Found at i:7243416 original size:25 final size:26
Alignment explanation
Indices: 7243382--7243430 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
7243372 AGTTGTAAAT
7243382 TAGAAAAATATCTCTAGA-AATTTTC
1 TAGAAAAATATCTCTAGAGAATTTTC
* *
7243407 TAGAATAATATCTTTAGAGAATTT
1 TAGAAAAATATCTCTAGAGAATTT
7243431 CCTCTCTACA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.43, C:0.08, G:0.10, T:0.39
Consensus pattern (26 bp):
TAGAAAAATATCTCTAGAGAATTTTC
Found at i:7243673 original size:20 final size:20
Alignment explanation
Indices: 7243644--7243697 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
7243634 AACATTAAAT
7243644 TAAATTTAATATTAAGA-TAA
1 TAAATTTAATATTAA-ATTAA
* *
7243664 TCACTTTAATATTAAATTAA
1 TAAATTTAATATTAAATTAA
7243684 TAAATTTAATATTA
1 TAAATTTAATATTA
7243698 TTTTTGGAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 1 0.03
20 28 0.97
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (20 bp):
TAAATTTAATATTAAATTAA
Found at i:7245266 original size:16 final size:16
Alignment explanation
Indices: 7245245--7245275 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7245235 CTATGCATGC
*
7245245 AAAATATAAAAGACAG
1 AAAATACAAAAGACAG
7245261 AAAATACAAAAGACA
1 AAAATACAAAAGACA
7245276 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.10, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAG
Found at i:7250501 original size:21 final size:21
Alignment explanation
Indices: 7250475--7250515 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7250465 AGATGAGCAA
* *
7250475 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
7250496 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
7250516 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:7270969 original size:89 final size:90
Alignment explanation
Indices: 7270824--7271023 Score: 250
Period size: 89 Copynumber: 2.3 Consensus size: 90
7270814 TTTTTTTTAA
* *
7270824 AAAAAAAAAGCAATTAAGCCCCTCTTTTTTTTGCACGCAATTAAGCACTTGAACTTTCAAAATAC
1 AAAAAAAAAGCAATTAAGCCCCTATTTTTTTTGCAAGCAATTAAGCACTTGAACTTTCAAAATAC
*
7270889 ATCAAAAAGATCC-TC-AAATTTCTTC
66 ATCAAAAAGA-CCTTCAAAAATT-TTC
* ** * * *
7270914 AAAAAAAAAGCAATTAAGCCCCTATTTTTTTT-CAATCAATTGGGTACTTGAACTTTTAAAATGC
1 AAAAAAAAAGCAATTAAGCCCCTATTTTTTTTGCAAGCAATTAAGCACTTGAACTTTCAAAATAC
7270978 ATCAAAAAGACCTTCAAAAATTTTC
66 ATCAAAAAGACCTTCAAAAATTTTC
*
7271003 ---AAAAAAGTAATTAAGCCCCTA
1 AAAAAAAAAGCAATTAAGCCCCTA
7271024 CTCTTATTAA
Statistics
Matches: 98, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
86 20 0.20
88 2 0.02
89 40 0.41
90 36 0.37
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.30
Consensus pattern (90 bp):
AAAAAAAAAGCAATTAAGCCCCTATTTTTTTTGCAAGCAATTAAGCACTTGAACTTTCAAAATAC
ATCAAAAAGACCTTCAAAAATTTTC
Found at i:7271008 original size:90 final size:90
Alignment explanation
Indices: 7270818--7271008 Score: 244
Period size: 90 Copynumber: 2.1 Consensus size: 90
7270808 ATCAATTTTT
* * *
7270818 TTTTAAAAAAAAAAAGCAATTAAGCCCCTCTTTTTTTTGCACGCAATTAAGCACTTGAACTTTCA
1 TTTTCAAAAAAAAAAGCAATTAAGCCCCTATTTTTTTTGCAAGCAATTAAGCACTTGAACTTTCA
*
7270883 AAATACATCAAAAAGATCCTCAAAT
66 AAATACATCAAAAAGATCCTCAAAA
* ** * *
7270908 TTCTTC-AAAAAAAAAGCAATTAAGCCCCTATTTTTTTT-CAATCAATTGGGTACTTGAACTTTT
1 TT-TTCAAAAAAAAAAGCAATTAAGCCCCTATTTTTTTTGCAAGCAATTAAGCACTTGAACTTTC
*
7270971 AAAATGCATCAAAAAGA-CCTTCAAAAA
65 AAAATACATCAAAAAGATCC-TC-AAAA
7270998 TTTTCAAAAAA
1 TTTTCAAAAAA
7271009 GTAATTAAGC
Statistics
Matches: 87, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
88 2 0.02
89 40 0.46
90 43 0.49
91 2 0.02
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.31
Consensus pattern (90 bp):
TTTTCAAAAAAAAAAGCAATTAAGCCCCTATTTTTTTTGCAAGCAATTAAGCACTTGAACTTTCA
AAATACATCAAAAAGATCCTCAAAA
Found at i:7271081 original size:18 final size:19
Alignment explanation
Indices: 7271060--7271095 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7271050 TTAAAAAATT
7271060 AAAAA-TAATAAATTTTAG
1 AAAAATTAATAAATTTTAG
*
7271078 AAAAATTATTAAATTTTA
1 AAAAATTAATAAATTTTA
7271096 ATATAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (19 bp):
AAAAATTAATAAATTTTAG
Found at i:7271261 original size:24 final size:24
Alignment explanation
Indices: 7271207--7271278 Score: 85
Period size: 24 Copynumber: 3.0 Consensus size: 24
7271197 TCACATGTCG
7271207 CATATTTTATAATTTGTATTT-TA-T
1 CATATTTTATAATTT-T-TTTATATT
* *
7271231 AAAATTTTATAATTTTTTTATATT
1 CATATTTTATAATTTTTTTATATT
*
7271255 CATATTTTATAATTTTTTAATATT
1 CATATTTTATAATTTTTTTATATT
7271279 GTTATAAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
22 3 0.07
23 3 0.07
24 35 0.85
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.62
Consensus pattern (24 bp):
CATATTTTATAATTTTTTTATATT
Found at i:7271295 original size:18 final size:18
Alignment explanation
Indices: 7271256--7271298 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
7271246 TTTTATATTC
**
7271256 ATATTTTATAATTTTTTA
1 ATATTTTATAAAATTTTA
7271274 ATATTGTTATAAAATTTT-
1 ATATT-TTATAAAATTTTA
7271292 ATATTTT
1 ATATTTT
7271299 TTTACTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 2 0.09
18 10 0.45
19 10 0.45
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (18 bp):
ATATTTTATAAAATTTTA
Found at i:7271309 original size:11 final size:10
Alignment explanation
Indices: 7271235--7271320 Score: 52
Period size: 10 Copynumber: 8.4 Consensus size: 10
7271225 TTTTATAAAA
7271235 TTTTATAATTT
1 TTTTAT-ATTT
7271246 TTTTATATTCAT
1 TTTTATATT--T
*
7271258 ATTTTATAATT
1 -TTTTATATTT
*
7271269 TTTTA-ATAT
1 TTTTATATTT
* ***
7271278 TGTTATAAAA
1 TTTTATATTT
7271288 TTTTATATTT
1 TTTTATATTT
7271298 TTTTACTA--T
1 TTTTA-TATTT
7271307 TTTTATATTT
1 TTTTATATTT
7271317 TTTT
1 TTTT
7271321 CTAATTTTTA
Statistics
Matches: 58, Mismatches: 10, Indels: 15
0.70 0.12 0.18
Matches are distributed among these distances:
8 2 0.03
9 12 0.21
10 26 0.45
11 9 0.16
12 1 0.02
13 8 0.14
ACGTcount: A:0.28, C:0.02, G:0.01, T:0.69
Consensus pattern (10 bp):
TTTTATATTT
Found at i:7271310 original size:19 final size:19
Alignment explanation
Indices: 7271288--7271330 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
7271278 TGTTATAAAA
7271288 TTTTATATTTTTTTACT-AT
1 TTTTATATTTTTTT-CTAAT
7271307 TTTTATATTTTTTTCTAAT
1 TTTTATATTTTTTTCTAAT
7271326 TTTTA
1 TTTTA
7271331 ATAAAAGTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 2 0.09
19 21 0.91
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTTATATTTTTTTCTAAT
Found at i:7271320 original size:29 final size:29
Alignment explanation
Indices: 7271233--7271333 Score: 87
Period size: 29 Copynumber: 3.4 Consensus size: 29
7271223 TATTTTATAA
* *
7271233 AATTTTATAATTTTTTTATATTCATATTTTAT
1 AATTTTTTAATATTTTTATATT--T-TTTTAT
* ***
7271265 AATTTTTTAATATTGTTATAAAATTTTAT
1 AATTTTTTAATATTTTTATATTTTTTTAT
* * *
7271294 ATTTTTTTACTATTTTTATATTTTTTTCT
1 AATTTTTTAATATTTTTATATTTTTTTAT
7271323 AA-TTTTTAATA
1 AATTTTTTAATA
7271334 AAAGTAGGGG
Statistics
Matches: 54, Mismatches: 15, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
28 8 0.15
29 29 0.54
32 17 0.31
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (29 bp):
AATTTTTTAATATTTTTATATTTTTTTAT
Found at i:7273341 original size:29 final size:30
Alignment explanation
Indices: 7273299--7273355 Score: 75
Period size: 29 Copynumber: 1.9 Consensus size: 30
7273289 AAAATTGGGG
7273299 GTTAAAATTAAATTAT-AT-ATTTTATTAGA
1 GTTAAAATTAAATT-TCATCATTTTATTAGA
7273328 GTTAAAATGT-AATTTCATCATTTTATTA
1 GTTAAAAT-TAAATTTCATCATTTTATTA
7273356 ACTTAAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
28 1 0.04
29 14 0.56
30 10 0.40
ACGTcount: A:0.40, C:0.04, G:0.07, T:0.49
Consensus pattern (30 bp):
GTTAAAATTAAATTTCATCATTTTATTAGA
Found at i:7274172 original size:9 final size:9
Alignment explanation
Indices: 7274153--7274195 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
7274143 TTTCCTAAAA
7274153 TAATATTAAT
1 TAAT-TTAAT
7274163 TAATTTAAT
1 TAATTTAAT
** *
7274172 TAATCAAAA
1 TAATTTAAT
7274181 TAATTTAAT
1 TAATTTAAT
7274190 TAATTT
1 TAATTT
7274196 TCTAATTAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
9 23 0.85
10 4 0.15
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (9 bp):
TAATTTAAT
Found at i:7276419 original size:3 final size:3
Alignment explanation
Indices: 7276411--7276453 Score: 61
Period size: 3 Copynumber: 14.0 Consensus size: 3
7276401 TGCATAATAG
7276411 AAT AAT AAT AAT GAA- AAT AAT AAT AAT AAT AAT AAT AAAT AAT
1 AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT
7276454 CTAATTTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
2 2 0.05
3 30 0.81
4 5 0.14
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:7276619 original size:17 final size:18
Alignment explanation
Indices: 7276599--7276634 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
7276589 AATGATAAGT
7276599 AAATAAAT-AAAATAAAA
1 AAATAAATAAAAATAAAA
*
7276616 AAATACATAAAAATAAAA
1 AAATAAATAAAAATAAAA
7276634 A
1 A
7276635 TCTAGACAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.17
Consensus pattern (18 bp):
AAATAAATAAAAATAAAA
Found at i:7278236 original size:95 final size:95
Alignment explanation
Indices: 7278073--7278271 Score: 287
Period size: 95 Copynumber: 2.1 Consensus size: 95
7278063 ATTTGCAACT
* * *
7278073 TAAGATTTGTAACTTGTGGCCTTAATCCGTTCCACTGCGACTTCGGAGAAATAAGGTTCGCATCT
1 TAAGATTTGTAACTTGTAGCCTTAATCCGTTCCACTGCAACTTCGGAGAAATAAGATTCGCATCT
7278138 TCAATCTGCTCCACTACAAGT-TTAAG-GAGA
66 TCAATCTGCTCCACTAC-A-TCTTAAGAGAGA
* * *
7278168 TAAGATTTGTAATTTGTAGCCTTAATCTGTTCTACTGCAACTTCAGG-GAAATAAGATTCGCATC
1 TAAGATTTGTAACTTGTAGCCTTAATCCGTTCCACTGCAACTTC-GGAGAAATAAGATTCGCATC
*
7278232 TTCAATCTGCTCCACTACATCTTCAGAGAGA
65 TTCAATCTGCTCCACTACATCTTAAGAGAGA
7278263 TAAGATTTG
1 TAAGATTTG
7278272 CTATCTTCAA
Statistics
Matches: 94, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
93 1 0.01
94 5 0.05
95 86 0.91
96 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.33
Consensus pattern (95 bp):
TAAGATTTGTAACTTGTAGCCTTAATCCGTTCCACTGCAACTTCGGAGAAATAAGATTCGCATCT
TCAATCTGCTCCACTACATCTTAAGAGAGA
Found at i:7278287 original size:45 final size:44
Alignment explanation
Indices: 7278191--7278315 Score: 153
Period size: 44 Copynumber: 2.8 Consensus size: 44
7278181 TTGTAGCCTT
* * * * *
7278191 AATCTGTTCTACTGCAACTTCAGGGAAATAAGATTCGCATCTTC
1 AATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGCATCTTC
* *
7278235 AATCTGCTCCACTACATCTTCAGAGAGATAAGATTTGCTATCTTC
1 AATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGC-ATCTTC
* *
7278280 AATCTGCTCCACTGCAACTTTAGGGAGAT-AGATTTG
1 AATCTGCTCCACTACAACTTCAGGGAGATAAGATTTG
7278316 TAACTTATAC
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
44 38 0.55
45 31 0.45
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (44 bp):
AATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGCATCTTC
Found at i:7278439 original size:45 final size:45
Alignment explanation
Indices: 7278388--7279549 Score: 796
Period size: 45 Copynumber: 25.9 Consensus size: 45
7278378 GATTCTCATA
* * * * *
7278388 TTCAATCTACTTCACTACATCTTTAGAGAGATAAGATTTGCTATC
1 TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATC
** * * *
7278433 TTCAATCTGCTCCACTTTAACTTTAGGGAGATAAGATTTGTAACTTGTAGC
1 TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTG---C---TATC
* * * * * *
7278484 TTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGC-ATA
1 TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATC
* * *
7278528 TTCAATTTGCTCCACTGTAACTTCA-AGGAGATAAGATTTG-TGGT-
1 TTCAATCTGCTCCACTGCAACTTCAGA-GAGATAAGATTTGCT-ATC
** * *
7278572 TTTGA-CATGCTCTACTGCAAC-TCTAGAGAGATAAGATTTG-TAGC
1 TTCAATC-TGCTCCACTGCAACTTC-AGAGAGATAAGATTTGCTATC
* * * * *
7278616 TTTAATCTACTCTACTGCAACTTCAGAGAGATAAGATTTGCCATT
1 TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATC
* * * * *
7278661 TTCAATTTGCTCCACTGCAACTTTAGGGAGATAAGGTTTG-TAGC
1 TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATC
* * * * * *
7278705 TTTAACCTGCTCAACTGTAACTTCAAAGAGATAAGATTTGCTATT
1 TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATC
* * * *
7278750 TTCAATCTGCTCCACTGCAACTTTAGGGAGATAAAATTTGTTATC
1 TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATC
* * * * **
7278795 CTCAATCTGCTCCACTACAACTTTAGGGAGATAAGATTTG-TGGC
1 TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATC
* * * ***
7278839 TTTAATCTACTCCACTGCAACTTCAAAGAGATAA-A-AACCTATAGC
1 TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTAT--C
* * * * *
7278884 TTTAATCTGCTCTACTGGAACTTTAGAGAGATAAGATTTCCTATC
1 TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATC
* * *
7278929 TTCAATCTGCTCCACTGCAACTTCAGAGAAAGAA-ATTTTGTTATC
1 TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGA-TTTGCTATC
* * * **
7278974 CTCAATCTGCTCCACTACAACTTCA-AGGAGATAAGATTT-TTGGC
1 TTCAATCTGCTCCACTGCAACTTCAGA-GAGATAAGATTTGCTATC
* * * * *
7279018 TTTAATCTACTCCACTACAACTTCAGGGAGATAAAGATTTG-TAGC
1 TTCAATCTGCTCCACTGCAACTTCAGAGAGAT-AAGATTTGCTATC
* * * * *
7279063 TTTAATCTACTCTACTGTAACTTCAGAGAGATAAGATTTGCTATT
1 TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATC
* * *
7279108 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAATATTTG-TAAC
1 TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATC
* * * * * *
7279152 TTGAATCTGTTCTACTGCAACTTTAGAGAAATAAGATTTG-TAGC
1 TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATC
* * ** * * *
7279196 TTTAATCTACTTTACTGCAATTTCAAAGAGATAAGATTTGCTATT
1 TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATC
* * * * * *
7279241 TTTAATCTACTCCACTACAACTTCAGGGAGATAAGATTT-ATGTC
1 TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATC
* * *
7279285 -TCAATCTACTACACTGCAACTTCAGGGAGATAAGATTTGTAACTTGAT-
1 TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTG---C-T-ATC
* * * **
7279333 TT-AATC-GAC-CCATTGTAACTTCAGAG-GTATAGGATTTG-TCGC
1 TTCAATCTG-CTCCACTGCAACTTCAGAGAG-ATAAGATTTGCTATC
* * * * *
7279375 TTTAATATGCTTCTCTGCAACTTCA-AGGAGATAAGATTTGTTATC
1 TTCAATCTGCTCCACTGCAACTTCAGA-GAGATAAGATTTGCTATC
* * * * *
7279420 TTTAACCTGCTCCATTACAACTTCAGAGAGATAA-AGTTTG-TAGC
1 TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGA-TTTGCTATC
* * * * *
7279464 TTTAATCTGCTCTATTGCAACTTCAAAGAGATAAGGTTTGCTATC
1 TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATC
*
7279509 TTCAATATGCTCCACTGCAACTTCAGAGAGATAAGATTTGC
1 TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGC
7279550 CACGATTACT
Statistics
Matches: 876, Mismatches: 191, Indels: 100
0.75 0.16 0.09
Matches are distributed among these distances:
42 3 0.00
43 44 0.05
44 328 0.37
45 424 0.48
46 4 0.00
47 27 0.03
48 8 0.01
49 2 0.00
51 36 0.04
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (45 bp):
TTCAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATC
Found at i:7278455 original size:156 final size:157
Alignment explanation
Indices: 7278170--7278478 Score: 494
Period size: 156 Copynumber: 2.0 Consensus size: 157
7278160 TAAGGAGATA
* * *
7278170 AGATTTGTAATTTGTAGCCTTAATCTGTTCTACTGCAACTTCAGGGAAATAAGATTCGCATCTTC
1 AGATTTGTAACTTGTAGCCTTAATCTGTTCTACTGCAACTTCAAGGAAATAAGATTCGCATATTC
*
7278235 AATCTGCTCCACTACATCTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTT
66 AATCTACTCCACTACATCTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTT
7278300 TAGGGAGAT-AGATTTGTAACTTATAC
131 TAGGGAGATAAGATTTGTAACTTATAC
** * * *
7278326 AGATTTGTAACTTGTAGTTTTAATCTGTTCTACTGCAACTTTAAGGAAATACGATTCTCATATTC
1 AGATTTGTAACTTGTAGCCTTAATCTGTTCTACTGCAACTTCAAGGAAATAAGATTCGCATATTC
* * **
7278391 AATCTACTTCACTACATCTTTAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTTTAACTT
66 AATCTACTCCACTACATCTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTT
7278456 TAGGGAGATAAGATTTGTAACTT
131 TAGGGAGATAAGATTTGTAACTT
7278479 GTAGCTTTAA
Statistics
Matches: 139, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
156 126 0.91
157 13 0.09
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (157 bp):
AGATTTGTAACTTGTAGCCTTAATCTGTTCTACTGCAACTTCAAGGAAATAAGATTCGCATATTC
AATCTACTCCACTACATCTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTT
TAGGGAGATAAGATTTGTAACTTATAC
Found at i:7278701 original size:89 final size:88
Alignment explanation
Indices: 7278484--7279551 Score: 757
Period size: 89 Copynumber: 12.0 Consensus size: 88
7278474 AACTTGTAGC
* * * * ** * * *
7278484 TTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCATATTCAATTTGCTCCACTGTAAC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCAAC
***
7278549 TTCA-AGGAGATAAGATTTGTGGT
66 TTCAGA-GAGATAAGATTTGCCAT
* * * * *
7278572 TTTGA-CATGCTCTACTGCAAC-TCTAGAGAGATAAGATTTGTAGCTTTAATCTACTCTACTGCA
1 TTTAATC-TGCTCCACTGCAACTTC-AGGGAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCA
7278635 ACTTCAGAGAGATAAGATTTGCCAT
64 ACTTCAGAGAGATAAGATTTGCCAT
* * * * * *
7278660 TTTCAATTTGCTCCACTGCAACTTTAGGGAGATAAGGTTTGTAGCTTTAACCTGCTCAACTGTAA
1 TTT-AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCAA
* *
7278725 CTTCAAAGAGATAAGATTTGCTAT
65 CTTCAGAGAGATAAGATTTGCCAT
* * * * * *
7278749 TTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAAATTTGTTATCCTCAATCTGCTCCACTACA
1 TTT-AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTTAATCTGCTCCACTGCA
* * ****
7278814 ACTTTAGGGAGATAAGATTTGTGGC
64 ACTTCAGAGAGATAAGATTTGCCAT
* ** * ** * * *
7278839 TTTAATCTACTCCACTGCAACTTCAAAGAGATAAAAACCTATAGCTTTAATCTGCTCTACTGGAA
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGAT-AAGATTTGTAGCTTTAATCTGCTCCACTGCAA
*
7278904 CTTTAGAGAGATAAGATTT-CCTAT
65 CTTCAGAGAGATAAGATTTGCC-AT
* * * * * * * *
7278928 CTTCAATCTGCTCCACTGCAACTTCAGAGAAAGAA-ATTTTGTTATCCTCAATCTGCTCCACTAC
1 -TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTTG-TAGCTTTAATCTGCTCCACTGC
*
7278992 AACTTCA-AGGAGATAAGATTTTTGGC--
63 AACTTCAGA-GAGATAAGA--TTTGCCAT
* * * * *
7279018 TTTAATCTACTCCACTACAACTTCAGGGAGATAAAGATTTGTAGCTTTAATCTACTCTACTGTAA
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGAT-AAGATTTGTAGCTTTAATCTGCTCCACTGCAA
*
7279083 CTTCAGAGAGATAAGATTTGCTAT
65 CTTCAGAGAGATAAGATTTGCCAT
* * * * *
7279107 TTTCAATCTGCTCCACTGCAACTTCAGGGAGATAATATTTGTAACTTGAATCTGTTCTACTGCAA
1 TTT-AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCAA
* * * *
7279172 CTTTAGAGAAATAAGATTTG-TAGC
65 CTTCAGAGAGATAAGATTTGCCA-T
* ** * ** ** * *
7279196 TTTAATCTACTTTACTGCAATTTCAAAGAGATAAGATTTGCTATTTTTAATCTACTCCACTACAA
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTTAATCTGCTCCACTGCAA
*
7279261 CTTCAGGGAGATAAGATTT---AT
65 CTTCAGAGAGATAAGATTTGCCAT
* * * *
7279282 GTCTCAATCTACTACACTGCAACTTCAGGGAGATAAGATTTGTAACTTGATTTAATC-GAC-CCA
1 -T-TTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-A---GCTTTAATCTG-CTCCA
* * * * **
7279345 TTGTAACTTCAGAG-GTATAGGATTTGTCGC
59 CTGCAACTTCAGAGAG-ATAAGATTTGCCAT
* * * * * * * *
7279375 TTTAATATGCTTCTCTGCAACTTCAAGGAGATAAGATTTGTTATCTTTAACCTGCTCCATTACAA
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTTAATCTGCTCCACTGCAA
* *
7279440 CTTCAGAGAGATAA-AGTTTG-TAGC
65 CTTCAGAGAGATAAGA-TTTGCCA-T
* * ** * * * *
7279464 TTTAATCTGCTCTATTGCAACTTCAAAGAGATAAGGTTTGCTATCTTCAATATGCTCCACTGCAA
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTTAATCTGCTCCACTGCAA
7279529 CTTCAGAGAGATAAGATTTGCCA
65 CTTCAGAGAGATAAGATTTGCCA
7279552 CGATTACTTC
Statistics
Matches: 769, Mismatches: 168, Indels: 84
0.75 0.16 0.08
Matches are distributed among these distances:
87 10 0.01
88 142 0.18
89 409 0.53
90 159 0.21
91 43 0.06
92 5 0.01
93 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (88 bp):
TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCAAC
TTCAGAGAGATAAGATTTGCCAT
Found at i:7278810 original size:134 final size:132
Alignment explanation
Indices: 7278477--7279548 Score: 781
Period size: 134 Copynumber: 8.0 Consensus size: 132
7278467 GATTTGTAAC
* * * * * *
7278477 TTGTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGC-ATATTCAATTTGCTCC
1 TTGTA-CTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCC
* * * * * * *
7278541 ACTGTAACTTCAAGGAGATAAGATTTGTGGTTTTGA-CATGCTCTACTGCAAC-TCTAGAGAGAT
65 ACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATC-TGCTCCACTGCAACTTC-AAAGAGAT
7278604 AAGAT
128 AAGAT
* * * * *
7278609 TTGTAGCTTTAATCTACTCTACTGCAACTTCAGAGAGATAAGATTTGCCATTTTCAATTTGCTCC
1 TTGTA-CTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCC
* * * * *
7278674 ACTGCAACTTTAGGGAGATAAGGTTTGTAGCTTTAACCTGCTCAACTGTAACTTCAAAGAGATAA
65 ACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAAAGAGATAA
7278739 GAT
130 GAT
* * * * * *
7278742 TTGCTATTTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAAATTTGTTATCCTCAATCTGCTC
1 TTG-TACTTT-AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTC
* * * *
7278807 CACTACAACTTTAGGGAGATAAGATTTGTGGCTTTAATCTACTCCACTGCAACTTCAAAGAGATA
64 CACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAAAGAGAT-
* *
7278872 AAAAC
128 AAGAT
* * * * * *
7278877 CTATAGCTTTAATCTGCTCTACTGGAACTTTAGAGAGATAAGATTTCCTATCTTCAATCTGCTCC
1 TTGTA-CTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCC
* * * * * * * *
7278942 ACTGCAACTTCAGAGAAAGAA-ATTTTGTTATCCTCAATCTGCTCCACTACAACTTCAAGGAGAT
65 ACTGCAACTTCAGGGAGATAAGA-TTTG-TAGCTTTAATCTGCTCCACTGCAACTTCAAAGAGAT
7279006 AAGAT
128 AAGAT
* * * * * * * *
7279011 TTTTGGCTTTAATCTACTCCACTACAACTTCAGGGAGATAAAGATTTG-TAGCTTTAATCTACTC
1 TTGT-ACTTTAATCTGCTCCACTGCAACTTCAGAGAGAT-AAGATTTGCTATCTTCAATCTGCTC
* * * * **
7279075 TACTGTAACTTCAGAGAGATAAGATTTGCTA-TTTTCAATCTGCTCCACTGCAACTTCAGGGAGA
64 CACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTT-AATCTGCTCCACTGCAACTTCAAAGAGA
*
7279139 TAATAT
127 TAAGAT
* * * * * * * * **
7279145 TTGTAACTTGAATCTGTTCTACTGCAACTTTAGAGAAATAAGATTTG-TAGCTTTAATCTACTTT
1 TTGT-ACTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCC
* ** ** * * **
7279209 ACTGCAATTTCAAAGAGATAAGATTTGCTATTTTTAATCTACTCCACTACAACTTCAGGGAGATA
65 ACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTTAATCTGCTCCACTGCAACTTCAAAGAGATA
7279274 AGATT
129 AGA-T
* * * *
7279279 TATGT-C-TCAATCTACTACACTGCAACTTCAGGGAGATAAGATTTGTAACTTGAT-TT-AATC-
1 T-TGTACTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTG---C-T-ATCTTCAATCT
* * * * * * * * *
7279339 GAC-CCATTGTAACTTCAGAGG-TATAGGATTTGTCGCTTTAATATGCTTCTCTGCAACTTCAAG
60 G-CTCCACTGCAACTTCAG-GGAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAAA
7279402 GAGATAAGAT
123 GAGATAAGAT
* * * * *
7279412 TTGTTATCTTTAACCTGCTCCATTACAACTTCAGAGAGATAA-AGTTTG-TAGCTTTAATCTGCT
1 TTG-TA-CTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGA-TTTGCTATCTTCAATCTGCT
* * ** * * * * *
7279475 CTATTGCAACTTCAAAGAGATAAGGTTTGCTATCTTCAATATGCTCCACTGCAACTTCAGAGAGA
63 CCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTTAATCTGCTCCACTGCAACTTCAAAGAGA
7279540 TAAGAT
127 TAAGAT
7279546 TTG
1 TTG
7279549 CCACGATTAC
Statistics
Matches: 752, Mismatches: 153, Indels: 68
0.77 0.16 0.07
Matches are distributed among these distances:
130 1 0.00
131 3 0.00
132 81 0.11
133 182 0.24
134 378 0.50
135 67 0.09
136 36 0.05
137 3 0.00
138 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (132 bp):
TTGTACTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCA
CTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATCTGCTCCACTGCAACTTCAAAGAGATAAG
AT
Found at i:7278935 original size:179 final size:179
Alignment explanation
Indices: 7278701--7279324 Score: 736
Period size: 179 Copynumber: 3.5 Consensus size: 179
7278691 ATAAGGTTTG
* * * * *
7278701 TAGCTTTAACCTGCTCAACTGTAACTTCAAAGAGATAAGATTTGCTATTTTCAATCTGCTCCACT
1 TAGCTTTAATCTACTCTACTGTAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACT
*
7278766 GCAACTTTAGGGAGATAAAATTTGTTATCCTCAATCTGCTCCACTACAACTTTAGGGAGATAAGA
66 GCAACTTCAGGGAGATAAAATTTGTTATCCTCAATCTGCTCCACTACAACTTTAGGGAGATAAGA
7278831 TTTGTGGCTTTAATCTACTCCACTGCAACTTCAAAGAGATAAAAACCTA
131 TTTGTGGCTTTAATCTACTCCACTGCAACTTCAAAGAGATAAAAACCTA
* * * *
7278880 TAGCTTTAATCTGCTCTACTGGAACTTTAGAGAGATAAGATTTCCTATCTTCAATCTGCTCCACT
1 TAGCTTTAATCTACTCTACTGTAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACT
* * * * * *
7278945 GCAACTTCAGAGAAAGAAATTTTGTTATCCTCAATCTGCTCCACTACAACTTCAAGGAGATAAGA
66 GCAACTTCAGGGAGATAAAATTTGTTATCCTCAATCTGCTCCACTACAACTTTAGGGAGATAAGA
* * ** * ** *
7279010 TTTTTGGCTTTAATCTACTCCACTACAACTTCAGGGAGATAAAGATTTG
131 TTTGTGGCTTTAATCTACTCCACTGCAACTTCAAAGAGATAAAAACCTA
*
7279059 TAGCTTTAATCTACTCTACTGTAACTTCAGAGAGATAAGATTTGCTATTTTCAATCTGCTCCACT
1 TAGCTTTAATCTACTCTACTGTAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACT
* * * * * * * * *
7279124 GCAACTTCAGGGAGATAATATTTG-TAACTTGAATCTGTTCTACTGCAACTTTAGAGAAATAAGA
66 GCAACTTCAGGGAGATAAAATTTGTTATCCTCAATCTGCTCCACTACAACTTTAGGGAGATAAGA
* ** * ***
7279188 TTTGTAGCTTTAATCTACTTTACTGCAATTTCAAAGAGATAAGATTTGCTA
131 TTTGTGGCTTTAATCTACTCCACTGCAACTTCAAAGAGATAA-A-AACCTA
* * ** * * * * *
7279239 T--TTTTAATCTACTCCACTACAACTTCAGGGAGATAAGATTT-ATGTC-TCAATCTACTACACT
1 TAGCTTTAATCTACTCTACTGTAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACT
*
7279300 GCAACTTCAGGGAGATAAGATTTGT
66 GCAACTTCAGGGAGATAAAATTTGT
7279325 AACTTGATTT
Statistics
Matches: 376, Mismatches: 66, Indels: 8
0.84 0.15 0.02
Matches are distributed among these distances:
176 36 0.10
177 2 0.01
178 99 0.26
179 237 0.63
180 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.34
Consensus pattern (179 bp):
TAGCTTTAATCTACTCTACTGTAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACT
GCAACTTCAGGGAGATAAAATTTGTTATCCTCAATCTGCTCCACTACAACTTTAGGGAGATAAGA
TTTGTGGCTTTAATCTACTCCACTGCAACTTCAAAGAGATAAAAACCTA
Found at i:7289989 original size:3 final size:3
Alignment explanation
Indices: 7289981--7290060 Score: 56
Period size: 3 Copynumber: 26.0 Consensus size: 3
7289971 TGCATAATAG
* * * *
7289981 AAT AAT AAT AAT GAA- AAT GAA- AAT GAT AAT AAT ACT AAT AAA AAC
1 AAT AAT AAT AAT -AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
7290026 AAC AAT AAT AAT AAAT AGT AAT AAT AAT AAAT AAT
1 AAT AAT AAT AAT -AAT AAT AAT AAT AAT -AAT AAT
7290061 CTAATTTTTT
Statistics
Matches: 62, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
2 4 0.06
3 48 0.77
4 10 0.16
ACGTcount: A:0.65, C:0.04, G:0.05, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:7290097 original size:15 final size:14
Alignment explanation
Indices: 7290079--7290127 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 14
7290069 TTAAAGTAAA
7290079 AATAAATAAATAAG
1 AATAAATAAATAAG
7290093 TAATAAAT-AAT-AG
1 -AATAAATAAATAAG
*
7290106 AATAAA-AAATAAC
1 AATAAATAAATAAG
7290119 AAT-AATAAA
1 AATAAATAAA
7290128 GGGAAAAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
12 11 0.37
13 9 0.30
14 3 0.10
15 7 0.23
ACGTcount: A:0.71, C:0.02, G:0.04, T:0.22
Consensus pattern (14 bp):
AATAAATAAATAAG
Found at i:7290238 original size:16 final size:16
Alignment explanation
Indices: 7290203--7290237 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
7290193 AATGATAAGT
7290203 AAATAAATAAAATAAA
1 AAATAAATAAAATAAA
*
7290219 AAATACATATAAATAAA
1 AAATAAATA-AAATAAA
7290236 AA
1 AA
7290238 TCTAGACAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (16 bp):
AAATAAATAAAATAAA
Found at i:7294410 original size:14 final size:15
Alignment explanation
Indices: 7294386--7294416 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
7294376 AATCATGATT
7294386 TGATATAACCTTTTA
1 TGATATAACCTTTTA
7294401 TGAT-TAACCTTTTA
1 TGATATAACCTTTTA
7294415 TG
1 TG
7294417 CAATAATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.75
15 4 0.25
ACGTcount: A:0.29, C:0.13, G:0.10, T:0.48
Consensus pattern (15 bp):
TGATATAACCTTTTA
Found at i:7298238 original size:7 final size:7
Alignment explanation
Indices: 7298226--7298260 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
7298216 AGAAGTATCT
7298226 GTTAGTA
1 GTTAGTA
7298233 GTTAGTA
1 GTTAGTA
7298240 GTTAGTA
1 GTTAGTA
7298247 GTTAGTA
1 GTTAGTA
7298254 GTTAGTA
1 GTTAGTA
7298261 TCAGTTGTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.43
Consensus pattern (7 bp):
GTTAGTA
Found at i:7301544 original size:11 final size:11
Alignment explanation
Indices: 7301522--7301581 Score: 84
Period size: 11 Copynumber: 5.4 Consensus size: 11
7301512 AACTAATCCT
7301522 CTCTCGAATTTC
1 CTCTC-AATTTC
7301534 CTCTCAATTTC
1 CTCTCAATTTC
*
7301545 CTCTAAATTTC
1 CTCTCAATTTC
*
7301556 CTCTCAATTTG
1 CTCTCAATTTC
*
7301567 CTCTCAAGTTC
1 CTCTCAATTTC
7301578 CTCT
1 CTCT
7301582 TAAATTTCTC
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
11 38 0.88
12 5 0.12
ACGTcount: A:0.18, C:0.33, G:0.05, T:0.43
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:7301571 original size:33 final size:35
Alignment explanation
Indices: 7301522--7301589 Score: 104
Period size: 33 Copynumber: 2.0 Consensus size: 35
7301512 AACTAATCCT
*
7301522 CTCTCGAATTTCCTCTCAATTTCCTC-TAAATTTC
1 CTCTCGAATTTCCTCTCAAGTTCCTCTTAAATTTC
*
7301556 CTCTC-AATTTGCTCTCAAGTTCCTCTTAAATTTC
1 CTCTCGAATTTCCTCTCAAGTTCCTCTTAAATTTC
7301590 TCTTAAATCC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 18 0.58
34 13 0.42
ACGTcount: A:0.21, C:0.31, G:0.04, T:0.44
Consensus pattern (35 bp):
CTCTCGAATTTCCTCTCAAGTTCCTCTTAAATTTC
Found at i:7302748 original size:7 final size:7
Alignment explanation
Indices: 7302736--7302761 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
7302726 TAGTCGATTG
7302736 GTATTTA
1 GTATTTA
7302743 GTATTTA
1 GTATTTA
7302750 GTATTTA
1 GTATTTA
7302757 GTATT
1 GTATT
7302762 ATGTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:7303437 original size:18 final size:18
Alignment explanation
Indices: 7303410--7303449 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7303400 CCGGTGCATT
* *
7303410 TCCTAGCCCTTTTATGTA
1 TCCTAACCCTTATATGTA
*
7303428 TCCTAACCCTTATATGTT
1 TCCTAACCCTTATATGTA
7303446 TCCT
1 TCCT
7303450 TTTCCGAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.30, G:0.07, T:0.45
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:7303934 original size:7 final size:8
Alignment explanation
Indices: 7303906--7303934 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
7303896 AACTAATTTA
7303906 TTATAAAT
1 TTATAAAT
7303914 TTATAAAT
1 TTATAAAT
7303922 TTATAAA-
1 TTATAAAT
7303929 TTATAA
1 TTATAA
7303935 TTAAATGCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
7 6 0.29
8 15 0.71
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
TTATAAAT
Found at i:7303975 original size:14 final size:14
Alignment explanation
Indices: 7303958--7304006 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
7303948 TTAATTGACA
7303958 AACCTTAAACCCTT
1 AACCTTAAACCCTT
*
7303972 AACCTAAAAACCC-T
1 AACCT-TAAACCCTT
*
7303986 AACCCT-AACCCTT
1 AACCTTAAACCCTT
7303999 AA-CTTAAA
1 AACCTTAAA
7304007 AATCGTAACT
Statistics
Matches: 28, Mismatches: 4, Indels: 7
0.72 0.10 0.18
Matches are distributed among these distances:
12 7 0.25
13 5 0.18
14 10 0.36
15 6 0.21
ACGTcount: A:0.43, C:0.35, G:0.00, T:0.22
Consensus pattern (14 bp):
AACCTTAAACCCTT
Found at i:7303991 original size:21 final size:21
Alignment explanation
Indices: 7303986--7304090 Score: 122
Period size: 21 Copynumber: 5.0 Consensus size: 21
7303976 TAAAAACCCT
7303986 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
* * * *
7304007 AATCGTAACTCTTAAATTAAA
1 AACCCTAACCCTTAACTTAAA
*
7304028 AACCCTAAACCCTTAACTTTAA
1 AACCCT-AACCCTTAACTTAAA
* * *
7304050 AACCGTAACCTTTAA-ATAAA
1 AACCCTAACCCTTAACTTAAA
7304070 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
7304091 TATAATTTGA
Statistics
Matches: 66, Mismatches: 16, Indels: 4
0.77 0.19 0.05
Matches are distributed among these distances:
20 16 0.24
21 33 0.50
22 17 0.26
ACGTcount: A:0.45, C:0.27, G:0.02, T:0.27
Consensus pattern (21 bp):
AACCCTAACCCTTAACTTAAA
Found at i:7304042 original size:43 final size:41
Alignment explanation
Indices: 7303986--7304090 Score: 158
Period size: 43 Copynumber: 2.5 Consensus size: 41
7303976 TAAAAACCCT
*
7303986 AACCCTAACCCTTAACTTAAAAATCGTAA-CTCTTAAATTAAA
1 AACCCTAACCCTTAACTTAAAAACCGTAACCT-TTAAA-TAAA
*
7304028 AACCCTAAACCCTTAACTTTAAAACCGTAACCTTTAAATAAA
1 AACCCT-AACCCTTAACTTAAAAACCGTAACCTTTAAATAAA
7304070 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
7304091 TATAATTTGA
Statistics
Matches: 58, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
41 14 0.24
42 16 0.28
43 26 0.45
44 2 0.03
ACGTcount: A:0.45, C:0.27, G:0.02, T:0.27
Consensus pattern (41 bp):
AACCCTAACCCTTAACTTAAAAACCGTAACCTTTAAATAAA
Found at i:7307523 original size:127 final size:126
Alignment explanation
Indices: 7307234--7307930 Score: 1028
Period size: 127 Copynumber: 5.5 Consensus size: 126
7307224 CCCAAACATG
*
7307234 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCACGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* *
7307299 TAGAAGCG-TTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTT-TTCCAGGAC
66 TTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
* *
7307358 CTACTGTAGCAAAAGCGTGTCCACGAGGGCACGTTTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCACGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* **
7307423 TTGAAGTGGTTTTTTAAACTATTTGCTCAGAAACGTCAACTTAAAATTATTTCTTCCAGGAC
66 TTGAAG-CGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
* *
7307485 CTACTGTAGCAAAAGCGCGTCTACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCACGATTTCACAAATTCTTCTCAAATAGCATCCTGC
*
7307550 TTGAAGCGTTTTTTTAAACTATTTGCTCAGAAACATCAACTCGAAATTATTTCTTCCAGGAC
66 TTGAAGCG-TTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
*
7307612 CTACTGTAGCAAAAGCGCATCCACGAGGGCACGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCACGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* *
7307677 TTGAAGCATTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGAAC
66 TTGAAGC-GTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
* * * * * * * * *
7307739 CTGCTATAGCAAAAGCACATCTACGAGGGCGCGATTTTAAAAATTCTTCTCATAA-AACATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCACGATTTCACAAATTCTTCTCA-AATAGCATCCTG
* * *
7307803 CTTGAAGCGTTTTTTATACTATTTGCTTAGAAACGTCAACTCAAAATTATTT-TTCCAGGAC
65 CTTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
* * * *
7307864 CTACTGTAGCAAAAGCGCGTCCACGCA-GGCACGACTTCAGAAATCCTTCTGATAA-AGCATCCT
1 CTACTGTAGCAAAAGCGCGTCCACG-AGGGCACGATTTCACAAATTCTTCTCA-AATAGCATCCT
7307927 GCTT
64 GCTT
7307931 TGATTTTATC
Statistics
Matches: 519, Mismatches: 47, Indels: 13
0.90 0.08 0.02
Matches are distributed among these distances:
124 67 0.13
125 62 0.12
126 81 0.16
127 307 0.59
128 2 0.00
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (126 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCACGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
Found at i:7308066 original size:8 final size:8
Alignment explanation
Indices: 7308055--7308095 Score: 50
Period size: 8 Copynumber: 5.2 Consensus size: 8
7308045 CAAAACCCTA
7308055 AAAATCCT
1 AAAATCCT
7308063 AAAATTCCT
1 AAAA-TCCT
7308072 -AAATCCT
1 AAAATCCT
7308079 AAAATCC-
1 AAAATCCT
*
7308086 AAAAACCT
1 AAAATCCT
7308094 AA
1 AA
7308096 CGTGGGAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
7 10 0.34
8 15 0.52
9 4 0.14
ACGTcount: A:0.54, C:0.24, G:0.00, T:0.22
Consensus pattern (8 bp):
AAAATCCT
Found at i:7309714 original size:18 final size:17
Alignment explanation
Indices: 7309691--7309725 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
7309681 TGTTTTCTTG
7309691 AAATTTTTAGAAAATTTT
1 AAATTTTTAG-AAATTTT
7309709 AAATTTTTAGAAATTTT
1 AAATTTTTAGAAATTTT
7309726 CATTTCTCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (17 bp):
AAATTTTTAGAAATTTT
Found at i:7309843 original size:32 final size:32
Alignment explanation
Indices: 7309743--7309847 Score: 92
Period size: 31 Copynumber: 3.3 Consensus size: 32
7309733 CCTTTAAAGT
**
7309743 TTTTAGAAAATTTTAATTAGGTTGCTC--AAAT-
1 TTTT-GAAAATTTTAATTAAATT-CTCTTAAATC
* * * * **
7309774 TTTTGAAAAATTTCATTATA-TCTTTTATTTC
1 TTTTGAAAATTTTAATTAAATTCTCTTAAATC
7309805 TTTTGAAAATTTTAATTAAATTCTCTTAAATC
1 TTTTGAAAATTTTAATTAAATTCTCTTAAATC
7309837 TTTTGAAAATT
1 TTTTGAAAATT
7309848 ATCATTAATG
Statistics
Matches: 57, Mismatches: 13, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
28 2 0.04
29 1 0.02
30 14 0.25
31 21 0.37
32 19 0.33
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (32 bp):
TTTTGAAAATTTTAATTAAATTCTCTTAAATC
Found at i:7309855 original size:32 final size:30
Alignment explanation
Indices: 7309770--7309855 Score: 84
Period size: 32 Copynumber: 2.8 Consensus size: 30
7309760 TAGGTTGCTC
* *
7309770 AAAT-TTTTGAAAAATTTCATTATATCTTTT
1 AAATCTTTTG-AAAATTTCATTAAATCTCTT
** *
7309800 ATTTCTTTTGAAAATTTTAATTAAATTCTCTT
1 AAATCTTTTGAAAA-TTTCATTAAA-TCTCTT
7309832 AAATCTTTTGAAAATTATCATTAA
1 AAATCTTTTGAAAATT-TCATTAA
7309856 TGTTAAAAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
30 6 0.14
31 15 0.34
32 23 0.52
ACGTcount: A:0.37, C:0.08, G:0.03, T:0.51
Consensus pattern (30 bp):
AAATCTTTTGAAAATTTCATTAAATCTCTT
Found at i:7311540 original size:16 final size:16
Alignment explanation
Indices: 7311521--7311563 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
7311511 ATTTTTGTAC
**
7311521 CTTTTTTTGTTTCTTT
1 CTTTTTTTGTTTCCAT
*
7311537 CTTTGTTTGTTTCCAT
1 CTTTTTTTGTTTCCAT
7311553 CTTTTGTTTGT
1 CTTTT-TTTGT
7311564 ATATTTTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 17 0.77
17 5 0.23
ACGTcount: A:0.02, C:0.14, G:0.12, T:0.72
Consensus pattern (16 bp):
CTTTTTTTGTTTCCAT
Found at i:7322947 original size:16 final size:18
Alignment explanation
Indices: 7322907--7322948 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
7322897 TTGAACTCAA
*
7322907 TATTATATTTATCAGTTCT
1 TATTAT-TTTATCAGTTAT
7322926 TATTATTTTATCA-TTAT
1 TATTATTTTATCAGTTAT
7322943 T-TTATT
1 TATTATT
7322949 CCAATTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 5 0.23
17 4 0.18
18 7 0.32
19 6 0.27
ACGTcount: A:0.26, C:0.07, G:0.02, T:0.64
Consensus pattern (18 bp):
TATTATTTTATCAGTTAT
Found at i:7324264 original size:28 final size:29
Alignment explanation
Indices: 7324227--7324287 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 29
7324217 AAATAAGTAA
* *
7324227 TAAAAAGAAATAGAAA-AAGGAAACAAAG
1 TAAAAAGAAACAGAAAGAAAGAAACAAAG
* *
7324255 TAAAACGAAACAGAAAGAAAGAAAGAAAG
1 TAAAAAGAAACAGAAAGAAAGAAACAAAG
7324284 -AAAA
1 TAAAA
7324288 GGGAGAAAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 18 0.64
29 10 0.36
ACGTcount: A:0.72, C:0.05, G:0.18, T:0.05
Consensus pattern (29 bp):
TAAAAAGAAACAGAAAGAAAGAAACAAAG
Found at i:7325247 original size:40 final size:40
Alignment explanation
Indices: 7325189--7325265 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
7325179 GGGTGCTAAT
* *
7325189 TTACTTCGATTTAGCCGATGAGACACTGCGTGTCAAATTA
1 TTACTTCGAATTAGCCGATGAGACACTGCGTGCCAAATTA
* * * *
7325229 TTACTTTGAATTATCCGATGAGGCACTGGGTGCCAAA
1 TTACTTCGAATTAGCCGATGAGACACTGCGTGCCAAA
7325266 CTGGTGTGTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.31
Consensus pattern (40 bp):
TTACTTCGAATTAGCCGATGAGACACTGCGTGCCAAATTA
Found at i:7332289 original size:21 final size:21
Alignment explanation
Indices: 7332254--7332332 Score: 88
Period size: 21 Copynumber: 3.6 Consensus size: 21
7332244 AATTTAAATG
*
7332254 TTTTATAATATTATTTTTTAAAA
1 TTTTA-AATA-TATTTTTTAATA
7332277 TTTTAAATATA-TTTTTAATTA
1 TTTTAAATATATTTTTTAA-TA
7332298 TTTTAAATATAATTTTTTAATA
1 TTTTAAATAT-ATTTTTTAATA
* *
7332320 TTATAAAAATATT
1 TTTTAAATATATT
7332333 ATAAAACAAT
Statistics
Matches: 50, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
20 7 0.14
21 16 0.32
22 15 0.30
23 12 0.24
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
TTTTAAATATATTTTTTAATA
Found at i:7332292 original size:22 final size:22
Alignment explanation
Indices: 7332254--7332332 Score: 74
Period size: 22 Copynumber: 3.6 Consensus size: 22
7332244 AATTTAAATG
*
7332254 TTTTATAATAT-TATTTTTTAAAA
1 TTTTA-AATATAT-TTTTTTAATA
7332277 TTTTAAATATA--TTTTTAATTA
1 TTTTAAATATATTTTTTTAA-TA
*
7332298 TTTTAAATATAATTTTTTAATA
1 TTTTAAATATATTTTTTTAATA
* *
7332320 TTATAAAAATATT
1 TTTTAAATATATT
7332333 ATAAAACAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
20 7 0.15
21 12 0.25
22 17 0.35
23 12 0.25
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
TTTTAAATATATTTTTTTAATA
Found at i:7332360 original size:72 final size:77
Alignment explanation
Indices: 7332274--7332433 Score: 231
Period size: 72 Copynumber: 2.1 Consensus size: 77
7332264 TTATTTTTTA
* * * *
7332274 AAATTTTAAATATATTTTTAATTATTTTAAATAT-AATTTTT-TAATAT-TA-TAAAAATATTAT
1 AAATTTGAAATATATCTTTAATTATTTTAAATATAAATTTTTAAAATATACATTAAAAATATTAT
7332335 AAAAC-AATAAT
66 AAAACAAATAAT
*
7332346 AAATTTGAAATATATCTTTAATTATTTTAAATATAAAATTTTTAAAATATACATTTAAAATATTA
1 AAATTTGAAATATATCTTTAATTATTTTAAATAT-AAATTTTTAAAATATACATTAAAAATATTA
7332411 TAAAACAAATAAT
65 TAAAACAAATAAT
7332424 AAATTTGAAA
1 AAATTTGAAA
7332434 GGTCATATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
72 32 0.42
74 7 0.09
75 5 0.06
76 1 0.01
77 16 0.21
78 16 0.21
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (77 bp):
AAATTTGAAATATATCTTTAATTATTTTAAATATAAATTTTTAAAATATACATTAAAAATATTAT
AAAACAAATAAT
Found at i:7332481 original size:77 final size:73
Alignment explanation
Indices: 7332301--7332482 Score: 170
Period size: 81 Copynumber: 2.4 Consensus size: 73
7332291 TTAATTATTT
* *
7332301 TAAATAT--AATTTTTTAATATTATAAAAATATTATAAAACAATAATAAATTTGAAATATATCTT
1 TAAATATAAAATTTTTT-ATATTATTAAAATATTATAAAACAATAATAAATTTGAAATATATCAT
** **
7332364 TAATTATTT
65 TAAAAATAA
* *
7332373 TAAATATAAAATTTTTAAAATATACATTTAAAATATTATAAAACAAATAATAAATTTGAAAGGTC
1 TAAATATAAAATTTTT--TATAT-TA-TTAAAATATTATAAAAC-AATAATAAATTTGAAA--T-
7332438 ATATCATTAAAAATAA
58 ATATCATTAAAAATAA
* * *
7332454 TATATTTTAAATTTTTTATATTATTAAAA
1 TAAATATAAAATTTTTTATATTATTAAAA
7332483 AATATATTTA
Statistics
Matches: 87, Mismatches: 13, Indels: 15
0.76 0.11 0.13
Matches are distributed among these distances:
72 7 0.08
74 7 0.08
75 4 0.05
76 1 0.01
77 22 0.25
78 17 0.20
79 4 0.05
80 1 0.01
81 24 0.28
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (73 bp):
TAAATATAAAATTTTTTATATTATTAAAATATTATAAAACAATAATAAATTTGAAATATATCATT
AAAAATAA
Found at i:7332490 original size:31 final size:33
Alignment explanation
Indices: 7332438--7332499 Score: 92
Period size: 31 Copynumber: 1.9 Consensus size: 33
7332428 TTGAAAGGTC
*
7332438 ATATCATTAAAAATAATATATTTTAAATTTTTT
1 ATATCATTAAAAATAATATATTTAAAATTTTTT
*
7332471 ATATTATT-AAAA-AATATATTTAAAATTTT
1 ATATCATTAAAAATAATATATTTAAAATTTT
7332500 AAAAAATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 16 0.59
32 4 0.15
33 7 0.26
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (33 bp):
ATATCATTAAAAATAATATATTTAAAATTTTTT
Found at i:7332519 original size:24 final size:21
Alignment explanation
Indices: 7332477--7332527 Score: 66
Period size: 24 Copynumber: 2.3 Consensus size: 21
7332467 TTTTATATTA
*
7332477 TTAAAAAATATATTTAAAATT
1 TTAAAAAATATATTTAAAAAT
7332498 TTAAAAAATAATATTATAAAAAAT
1 TTAAAAAAT-ATATT-T-AAAAAT
7332522 TTAAAA
1 TTAAAA
7332528 TGTACATTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 9 0.35
22 5 0.19
23 1 0.04
24 11 0.42
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (21 bp):
TTAAAAAATATATTTAAAAAT
Found at i:7332609 original size:24 final size:25
Alignment explanation
Indices: 7332577--7332623 Score: 87
Period size: 24 Copynumber: 1.9 Consensus size: 25
7332567 AATAAAGGAC
7332577 AAATAAAAAAACTTAAAAAGAAATT
1 AAATAAAAAAACTTAAAAAGAAATT
7332602 AAAT-AAAAAACTTAAAAAGAAA
1 AAATAAAAAAACTTAAAAAGAAA
7332624 AACAAAATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 18 0.82
25 4 0.18
ACGTcount: A:0.74, C:0.04, G:0.04, T:0.17
Consensus pattern (25 bp):
AAATAAAAAAACTTAAAAAGAAATT
Found at i:7332624 original size:13 final size:13
Alignment explanation
Indices: 7332584--7332624 Score: 52
Period size: 12 Copynumber: 3.3 Consensus size: 13
7332574 GACAAATAAA
7332584 AAAACTTAAAAAG
1 AAAACTTAAAAAG
7332597 -AAA-TTAAATAA-
1 AAAACTTAAA-AAG
7332608 AAAACTTAAAAAG
1 AAAACTTAAAAAG
7332621 AAAA
1 AAAA
7332625 ACAAAATGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
11 5 0.21
12 10 0.42
13 9 0.38
ACGTcount: A:0.73, C:0.05, G:0.05, T:0.17
Consensus pattern (13 bp):
AAAACTTAAAAAG
Found at i:7334562 original size:19 final size:19
Alignment explanation
Indices: 7334525--7334562 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
7334515 TTGTGTATAA
*
7334525 TTTAAATTAAACTTTAAAT
1 TTTAAATTAAACTTAAAAT
7334544 TTTAAA-TAAATCTTAAAAT
1 TTTAAATTAAA-CTTAAAAT
7334563 ATAACATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (19 bp):
TTTAAATTAAACTTAAAAT
Found at i:7343714 original size:3 final size:3
Alignment explanation
Indices: 7343695--7343759 Score: 82
Period size: 3 Copynumber: 22.3 Consensus size: 3
7343685 TTATATTTAT
* *
7343695 TTA TTCA TTA TTA -TA TTA TTA -TA TTA -TA CTA TTA TTA TTA CTA
1 TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7343738 TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA T
7343760 ATTTCTATTT
Statistics
Matches: 55, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
2 6 0.11
3 46 0.84
4 3 0.05
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Done.