Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60343961
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 596159 characters in sequence are not A, C, G, or T
File 27 of 204
Found at i:7591340 original size:25 final size:24
Alignment explanation
Indices: 7591289--7591342 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
7591279 TGTATAAACC
7591289 ATAAAAAATTATAATGAAATAAAAT
1 ATAAAAAATTATAA-GAAATAAAAT
*
7591314 ATAAAAAATTCATAA-AAATATATAT
1 ATAAAAAATT-ATAAGAAATA-AAAT
7591339 ATAA
1 ATAA
7591343 TCTAAAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 5 0.19
25 17 0.65
26 4 0.15
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
ATAAAAAATTATAAGAAATAAAAT
Found at i:7592513 original size:29 final size:29
Alignment explanation
Indices: 7592414--7592510 Score: 83
Period size: 29 Copynumber: 3.3 Consensus size: 29
7592404 AAATGTTTAC
*
7592414 TAGTGATTAGTTTGTTATTTTTATAAAAGTT
1 TAGTGATTA-TTTGTTA-TTTTACAAAAGTT
* *
7592445 TAGTGATTGAGTTGTAACTTTT-C-AAAGTT
1 TAGTGATT-ATTTGTTA-TTTTACAAAAGTT
* *
7592474 TAGT-TTTTTTTGTTATTTTAACAAAAGTT
1 TAGTGATTATTTGTTATTTT-ACAAAAGTT
7592503 TAGTGATT
1 TAGTGATT
7592511 TTTAGTGTAC
Statistics
Matches: 52, Mismatches: 9, Indels: 11
0.72 0.12 0.15
Matches are distributed among these distances:
26 4 0.08
27 5 0.10
28 3 0.06
29 20 0.38
30 2 0.04
31 17 0.33
32 1 0.02
ACGTcount: A:0.28, C:0.03, G:0.16, T:0.53
Consensus pattern (29 bp):
TAGTGATTATTTGTTATTTTACAAAAGTT
Found at i:7593636 original size:33 final size:32
Alignment explanation
Indices: 7593541--7593642 Score: 113
Period size: 33 Copynumber: 3.1 Consensus size: 32
7593531 AGAAATTGTA
7593541 TTATACTTTTTTTTGTCTTTGTAATAAATTAATG
1 TTATAC-TTTTTTTGTC-TTGTAATAAATTAATG
7593575 TTA-A-TTTTGTTAAT-TCTAT-TAATAAATTAATG
1 TTATACTTTT-TT--TGTCT-TGTAATAAATTAATG
7593607 TTATACTTTTTTTGTCATTGTAATAAATTAATG
1 TTATACTTTTTTTGTC-TTGTAATAAATTAATG
7593640 TTA
1 TTA
7593643 ATTCTATTAA
Statistics
Matches: 59, Mismatches: 0, Indels: 19
0.76 0.00 0.24
Matches are distributed among these distances:
31 5 0.08
32 22 0.37
33 24 0.41
34 8 0.14
ACGTcount: A:0.31, C:0.05, G:0.08, T:0.56
Consensus pattern (32 bp):
TTATACTTTTTTTGTCTTGTAATAAATTAATG
Found at i:7593658 original size:12 final size:12
Alignment explanation
Indices: 7593641--7593665 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7593631 AAATTAATGT
7593641 TAATTCTATTAA
1 TAATTCTATTAA
7593653 TAATTCTATTAA
1 TAATTCTATTAA
7593665 T
1 T
7593666 TATTATTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (12 bp):
TAATTCTATTAA
Found at i:7594764 original size:12 final size:12
Alignment explanation
Indices: 7594729--7594767 Score: 55
Period size: 11 Copynumber: 3.4 Consensus size: 12
7594719 CTTATTTGGA
7594729 TTTATTTTAT-T
1 TTTATTTTATAT
*
7594740 TTTATTTT-CAT
1 TTTATTTTATAT
7594751 TTTATTTTATAT
1 TTTATTTTATAT
7594763 TTTAT
1 TTTAT
7594768 ATTAACGAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 17 0.71
12 7 0.29
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTATTTTATAT
Found at i:7596663 original size:101 final size:102
Alignment explanation
Indices: 7596543--7596727 Score: 293
Period size: 101 Copynumber: 1.8 Consensus size: 102
7596533 AAAGTGATGG
* * *
7596543 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAT-A-GGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGCACCGG-ATGATAATGGTCACATGTGTAGT
7596606 ACTATGTGCAGGCTACTATGCGTACCGGATAGTTTCGA
65 ACTATGTGCAGGCTACTATGCGTACCGGATAGTTTCGA
* *
7596644 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGCATCGGATGGTAATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGCACCGGATGATAATGGTCACATGTGTAGTA
*
7596709 CTATGTTCAGGCTACTATG
66 CTATGTGCAGGCTACTATG
7596728 TGAATCGAAC
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
100 4 0.05
101 39 0.51
102 33 0.43
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGCACCGGATGATAATGGTCACATGTGTAGTA
CTATGTGCAGGCTACTATGCGTACCGGATAGTTTCGA
Found at i:7596673 original size:51 final size:51
Alignment explanation
Indices: 7596539--7596725 Score: 218
Period size: 51 Copynumber: 3.7 Consensus size: 51
7596529 AGTGAAAGTG
* *
7596539 ATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGA-A-TG
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
* * *
7596588 ATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGT-
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
* * * * * * *
7596639 TTCGATCACGTGTGTAGTACTATGTGCAAGCTACTACGTGCATCGGATGGTA
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
*
7596691 ATGGTCACATGTGTAGTACTATGTTCAGGCTACTA
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
7596726 TGTGAATCGA
Statistics
Matches: 114, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
49 2 0.02
50 40 0.35
51 70 0.61
52 2 0.02
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (51 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
Found at i:7600317 original size:26 final size:26
Alignment explanation
Indices: 7600260--7600320 Score: 97
Period size: 26 Copynumber: 2.3 Consensus size: 26
7600250 ACAACTCTTA
*
7600260 TGAGCGTCCTGATAAATGGCTCTTTG
1 TGAGCTTCCTGATAAATGGCTCTTTG
7600286 TGAGCTTCCTGATTAAA-GGCTCTTTG
1 TGAGCTTCCTGA-TAAATGGCTCTTTG
7600312 TGAGCTTCC
1 TGAGCTTCC
7600321 CATTAATTGC
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
26 29 0.88
27 4 0.12
ACGTcount: A:0.18, C:0.21, G:0.25, T:0.36
Consensus pattern (26 bp):
TGAGCTTCCTGATAAATGGCTCTTTG
Found at i:7600333 original size:25 final size:26
Alignment explanation
Indices: 7600272--7600326 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 26
7600262 AGCGTCCTGA
*
7600272 TAAATGGCTCTTTGTGAGCTTCCTGAT
1 TAAA-GGCTCTTTGTGAGCTTCCTCAT
7600299 TAAAGGCTCTTTGTGAGCTTCC-CAT
1 TAAAGGCTCTTTGTGAGCTTCCTCAT
7600324 TAA
1 TAA
7600327 TTGCTCTCTG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 5 0.19
26 18 0.67
27 4 0.15
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (26 bp):
TAAAGGCTCTTTGTGAGCTTCCTCAT
Found at i:7600427 original size:24 final size:25
Alignment explanation
Indices: 7600374--7600429 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
7600364 TTCCTAATAT
* * *
7600374 ATGGCTATCCGGAGCTTCCCGATTA
1 ATGGCTCTTCGGAGCTACCCGATTA
7600399 ATGGCTCTTCGGAGCTACCC-ATTA
1 ATGGCTCTTCGGAGCTACCCGATTA
*
7600423 TTGGCTC
1 ATGGCTC
7600430 GCATGAGCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
24 10 0.37
25 17 0.63
ACGTcount: A:0.18, C:0.29, G:0.23, T:0.30
Consensus pattern (25 bp):
ATGGCTCTTCGGAGCTACCCGATTA
Found at i:7600519 original size:25 final size:25
Alignment explanation
Indices: 7600491--7600539 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
7600481 ATAGCTTCCC
* *
7600491 GTTACATGGCTCGCATGAGCTTCAT
1 GTTACATGGCTCGAAAGAGCTTCAT
* *
7600516 GTTATATGGTTCGAAAGAGCTTCA
1 GTTACATGGCTCGAAAGAGCTTCA
7600540 CATTAAGTGC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.33
Consensus pattern (25 bp):
GTTACATGGCTCGAAAGAGCTTCAT
Found at i:7604415 original size:54 final size:54
Alignment explanation
Indices: 7604338--7604474 Score: 247
Period size: 54 Copynumber: 2.5 Consensus size: 54
7604328 ATTGTCATTG
*
7604338 CAGGGGATTTAGCCTGGATTGGTAATCCCGACAATACTCTATGAGTTTATATTA
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
*
7604392 CAGGAGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
*
7604446 CAGGGGATTTAGCCTGGACTAGTAATCCC
1 CAGGGGATTTAGCCTGGACTGGTAATCCC
7604475 ACTGTAAGGA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 79 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.31
Consensus pattern (54 bp):
CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
Found at i:7609417 original size:26 final size:26
Alignment explanation
Indices: 7609338--7609415 Score: 111
Period size: 26 Copynumber: 2.9 Consensus size: 26
7609328 TTGTTAAAAC
7609338 TCTTCTAAAAGAAAACTCAAGAGAAAT
1 TCTT-TAAAAGAAAACTCAAGAGAAAT
* *
7609365 TATTTAAAAGAAAACTTAAGAGAAAT
1 TCTTTAAAAGAAAACTCAAGAGAAAT
*
7609391 TCTTTAAAATAAAACTCAAAGAGAA
1 TCTTTAAAAGAAAACTC-AAGAGAA
7609416 TTTTATTAAC
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
26 35 0.78
27 10 0.22
ACGTcount: A:0.55, C:0.10, G:0.10, T:0.24
Consensus pattern (26 bp):
TCTTTAAAAGAAAACTCAAGAGAAAT
Found at i:7609424 original size:27 final size:26
Alignment explanation
Indices: 7609343--7609424 Score: 87
Period size: 26 Copynumber: 3.1 Consensus size: 26
7609333 AAAACTCTTC
*
7609343 TAAAAGAAAACTCAAGAGAA-ATTATT
1 TAAAAGAAAACTCAAGAGAATTTTA-T
* *
7609369 TAAAAGAAAACTTAAGAGAAATTCT-T
1 TAAAAGAAAACTCAAGAG-AATTTTAT
*
7609395 TAAAATAAAACTCAAAGAGAATTTTAT
1 TAAAAGAAAACTC-AAGAGAATTTTAT
7609422 TAA
1 TAA
7609425 CTCAAAGTGA
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
26 34 0.74
27 11 0.24
28 1 0.02
ACGTcount: A:0.56, C:0.07, G:0.10, T:0.27
Consensus pattern (26 bp):
TAAAAGAAAACTCAAGAGAATTTTAT
Found at i:7611999 original size:35 final size:34
Alignment explanation
Indices: 7611953--7612025 Score: 83
Period size: 34 Copynumber: 2.1 Consensus size: 34
7611943 AATGATGTTA
* **
7611953 AATTGAATGTATTTATTATGTACATAGCCAAATTG
1 AATTGAATGTATGTA-TAACTACATAGCCAAATTG
* * *
7611988 AATTGTATGTATGTATAACTACATTGCCGAATTG
1 AATTGAATGTATGTATAACTACATAGCCAAATTG
7612022 AATT
1 AATT
7612026 TAGCATAGAA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
34 19 0.59
35 13 0.41
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.40
Consensus pattern (34 bp):
AATTGAATGTATGTATAACTACATAGCCAAATTG
Found at i:7612203 original size:43 final size:42
Alignment explanation
Indices: 7612142--7612350 Score: 163
Period size: 43 Copynumber: 4.9 Consensus size: 42
7612132 TCTGATATGT
*
7612142 GATTTCTTGTAAGACCACGTCTGGGACGTTGGCATCGATTTGA
1 GATTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATTT-A
**
7612185 GATTTCGTGTAAGACCACGTCTGGGACGTTGGTGTCGATTTGA
1 GATTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATTT-A
* * * * * * * *
7612228 GGTTTATGTGTAAGAGCATGTTTGGAACATTGGCATC-ATATA
1 GATTT-CGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTA
** * *
7612270 TGATTTCGTGTAAGACCTTGCCTGGGACAG-TGGCATCAATAGTT-
1 -GATTTCGTGTAAGACCACGTCTGGGAC-GTTGGCATCGAT--TTA
* * * *
7612314 GATTACATGTAAGACAACGTCTAGGACGTTGGCATCG
1 GATTTCGTGTAAGACCACGTCTGGGACGTTGGCATCG
7612351 TACGAGCTTT
Statistics
Matches: 129, Mismatches: 30, Indels: 14
0.75 0.17 0.08
Matches are distributed among these distances:
42 25 0.19
43 80 0.62
44 23 0.18
45 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (42 bp):
GATTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTA
Found at i:7617129 original size:28 final size:28
Alignment explanation
Indices: 7617089--7617143 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
7617079 CCAAAGATAG
7617089 CCAAATTGTATGCCAAAATGATAGGTAA
1 CCAAATTGTATGCCAAAATGATAGGTAA
7617117 CCAAATTGTATGCCAAAATGATAGGTA
1 CCAAATTGTATGCCAAAATGATAGGTA
7617144 GTTTTTATTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.42, C:0.15, G:0.18, T:0.25
Consensus pattern (28 bp):
CCAAATTGTATGCCAAAATGATAGGTAA
Found at i:7619063 original size:27 final size:27
Alignment explanation
Indices: 7619033--7619245 Score: 255
Period size: 27 Copynumber: 7.9 Consensus size: 27
7619023 GGTATAACAA
* *
7619033 TCATTTTACCCTATAGGGATATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCAG
**
7619060 TCATTTTACCCTATGGGGGTATTTCTT
1 TCATTTTACCCTATGGGGGTATTTCAG
* *
7619087 TCATTCTACCCTATGGGGGTATTTCAA
1 TCATTTTACCCTATGGGGGTATTTCAG
* * *
7619114 TTATTTTACCCTATAGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCAG
* *
7619141 TCATTTTACACTATGGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCAG
**
7619168 TCATTTTACCCTATGAAGGTATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCAG
* * * **
7619195 TTATTCTACCCTATGGGGTTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCAG
*
7619222 TCATTTTACCCTATGGAGGTATTT
1 TCATTTTACCCTATGGGGGTATTT
7619246 TGATCATAAC
Statistics
Matches: 156, Mismatches: 30, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 156 1.00
ACGTcount: A:0.20, C:0.17, G:0.19, T:0.43
Consensus pattern (27 bp):
TCATTTTACCCTATGGGGGTATTTCAG
Found at i:7619120 original size:81 final size:81
Alignment explanation
Indices: 7619030--7619245 Score: 297
Period size: 81 Copynumber: 2.7 Consensus size: 81
7619020 AAGGGTATAA
* * **
7619030 CAATCATTTTACCCTATAGGGATATTTCAGTCATTTTACCCTATGGGGGTATTTCTTTCATTCTA
1 CAATTATTTTACCCTATAGGGATATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTCATTCTA
**
7619095 CCCTATGGGGGTATTT
66 CCCTATGAAGGTATTT
* * *
7619111 CAATTATTTTACCCTATAGGGGTATTTCGGTCATTTTACACTATGGGGGTATTTCGGTCATTTTA
1 CAATTATTTTACCCTATAGGGATATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTCATTCTA
7619176 CCCTATGAAGGTATTT
66 CCCTATGAAGGTATTT
* * * * * *
7619192 CAGTTATTCTACCCTATGGGGTTATTTTGGTCATTTTACCCTATGGAGGTATTT
1 CAATTATTTTACCCTATAGGGATATTTCGGTCATTTTACCCTATGGGGGTATTT
7619246 TGATCATAAC
Statistics
Matches: 119, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 119 1.00
ACGTcount: A:0.21, C:0.18, G:0.19, T:0.43
Consensus pattern (81 bp):
CAATTATTTTACCCTATAGGGATATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTCATTCTA
CCCTATGAAGGTATTT
Found at i:7627061 original size:23 final size:24
Alignment explanation
Indices: 7627017--7627062 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
7627007 TTTCTCACAT
* **
7627017 TTTCAATTCAATCATTTTTCCACC
1 TTTCAATTCAATAATTAATCCACC
7627041 TTTCAA-TCAATAATTAATCCAC
1 TTTCAATTCAATAATTAATCCAC
7627063 AAACTCACAC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.33, C:0.26, G:0.00, T:0.41
Consensus pattern (24 bp):
TTTCAATTCAATAATTAATCCACC
Found at i:7627216 original size:3 final size:3
Alignment explanation
Indices: 7627208--7627266 Score: 73
Period size: 3 Copynumber: 19.7 Consensus size: 3
7627198 TCACTCATCT
* * * * *
7627208 TAA TAA TAA TAA TAA TAT TAA TAT TAA TAG TAA TAG TAA TAG TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7627256 TAA TAA TAA TA
1 TAA TAA TAA TA
7627267 CTTACCTCAC
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:7628038 original size:22 final size:24
Alignment explanation
Indices: 7628010--7628056 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
7628000 ATGTATTAGT
7628010 TAATAAT-A-ATAACAATATATTA
1 TAATAATCATATAACAATATATTA
* *
7628032 TAATAATCATATAATAATATTTTA
1 TAATAATCATATAACAATATATTA
7628056 T
1 T
7628057 TCACAAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 7 0.33
23 1 0.05
24 13 0.62
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (24 bp):
TAATAATCATATAACAATATATTA
Found at i:7628391 original size:12 final size:12
Alignment explanation
Indices: 7628350--7628391 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
7628340 ATAATAATAA
*
7628350 AAATAATTACAAT
1 AAATAATT-TAAT
7628363 -AATAATTTAATT
1 AAATAATTTAA-T
7628375 AAATAATTTAAT
1 AAATAATTTAAT
7628387 AAATA
1 AAATA
7628392 TCTATTTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
11 2 0.08
12 14 0.54
13 10 0.38
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (12 bp):
AAATAATTTAAT
Found at i:7638556 original size:82 final size:82
Alignment explanation
Indices: 7638408--7638604 Score: 263
Period size: 82 Copynumber: 2.4 Consensus size: 82
7638398 ATCAATTTTA
** **
7638408 TTAAACGGC-AGAATTAAATCTCGAAACAAAATTATTTGATTAAGTCTTCGTTTGGAAACAAAAT
1 TTAAACGGCGAGAA-TAAATCTCGAAAC-AAATTATTCAATTAAGTCTTAATTTGGAAACAAAAT
*
7638472 CAAGATCAAATAAAATCTG
64 CAAAATCAAATAAAATCTG
* *
7638491 TTAAACGGCGAGAATAAATCTCGAAACAGATTATTCAATTTAATTC-TAATTTGGAAACAAAATC
1 TTAAACGGCGAGAATAAATCTCGAAACAAATTATTCAA-TTAAGTCTTAATTTGGAAACAAAATC
*
7638555 AAAATCGAATAAAATCTG
65 AAAATCAAATAAAATCTG
* *
7638573 TTAAATGGCGAGAATAAATCCCGAAACAAATT
1 TTAAACGGCGAGAATAAATCTCGAAACAAATT
7638605 TTATTTCATT
Statistics
Matches: 101, Mismatches: 11, Indels: 5
0.86 0.09 0.04
Matches are distributed among these distances:
82 69 0.68
83 28 0.28
84 4 0.04
ACGTcount: A:0.46, C:0.14, G:0.13, T:0.27
Consensus pattern (82 bp):
TTAAACGGCGAGAATAAATCTCGAAACAAATTATTCAATTAAGTCTTAATTTGGAAACAAAATCA
AAATCAAATAAAATCTG
Found at i:7638669 original size:87 final size:86
Alignment explanation
Indices: 7638458--7638715 Score: 292
Period size: 82 Copynumber: 3.0 Consensus size: 86
7638448 TAAGTCTTCG
* * * * *
7638458 TTTGGAAACAAAATCAAGATCAAATAAAATCTGTTAAACGGCGAGAATAAATCTCGAAACAGA--
1 TTTGGAAACAAAATAAAAATCGAATAAAATCTGTTAAATGGCGAGAATAAATCCCGAAACAGATT
**
7638521 TTA-TTCAATTTAA-TTCTAA
66 TTATTTCAATTTAATTTCTCT
* *
7638540 TTTGGAAACAAAATCAAAATCGAATAAAATCTGTTAAATGGCGAGAATAAATCCCGAAACAAATT
1 TTTGGAAACAAAATAAAAATCGAATAAAATCTGTTAAATGGCGAGAATAAATCCCGAAACAGATT
*
7638605 TTATTTCATTTTAATTTCTCT
66 TTATTTCAATTTAATTTCTCT
* * * * * * **
7638626 TTTGGCAATAAAATAAAAATTGGAATAAAATATGTTAAATGGCGGGAAAAAATCCCGAAGTAGAT
1 TTTGGAAACAAAATAAAAA-TCGAATAAAATCTGTTAAATGGCGAGAATAAATCCCGAAACAGAT
*
7638691 TTTATTT-AATTTAATTACTCGT
65 TTTATTTCAATTTAATTTCTC-T
7638713 TTT
1 TTT
7638716 TATTTAATTT
Statistics
Matches: 150, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
82 58 0.39
84 3 0.02
85 9 0.06
86 31 0.21
87 49 0.33
ACGTcount: A:0.43, C:0.12, G:0.13, T:0.33
Consensus pattern (86 bp):
TTTGGAAACAAAATAAAAATCGAATAAAATCTGTTAAATGGCGAGAATAAATCCCGAAACAGATT
TTATTTCAATTTAATTTCTCT
Found at i:7638731 original size:22 final size:23
Alignment explanation
Indices: 7638690--7638737 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
7638680 CCGAAGTAGA
7638690 TTTTATTTAATTTAATTACTCGT
1 TTTTATTTAATTTAATTACTCGT
7638713 TTTTATTTAATTTAA-TACTCGT
1 TTTTATTTAATTTAATTACTCGT
7638735 TTT
1 TTT
7638738 AGAAATAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 10 0.40
23 15 0.60
ACGTcount: A:0.25, C:0.08, G:0.04, T:0.62
Consensus pattern (23 bp):
TTTTATTTAATTTAATTACTCGT
Found at i:7638848 original size:38 final size:39
Alignment explanation
Indices: 7638797--7638872 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 39
7638787 CTCGAAACAG
*
7638797 ATTTTATTTAA-TTTAAT-GTTCATTTTGGAAATAAAATA
1 ATTTTATTTAATTTTAATACTT-ATTTTGGAAATAAAATA
*
7638835 ATTTTATTTAATTTTAATACTTGTTTTGGAAATAAAAT
1 ATTTTATTTAATTTTAATACTTATTTTGGAAATAAAAT
7638873 TAAAATTGGA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
38 11 0.32
39 21 0.62
40 2 0.06
ACGTcount: A:0.38, C:0.03, G:0.08, T:0.51
Consensus pattern (39 bp):
ATTTTATTTAATTTTAATACTTATTTTGGAAATAAAATA
Found at i:7638867 original size:124 final size:125
Alignment explanation
Indices: 7638713--7638961 Score: 331
Period size: 124 Copynumber: 2.0 Consensus size: 125
7638703 AATTACTCGT
* * *
7638713 TTTTATTTAATTTAATACTCGTTTTAGAAATAAAATCAAAATTGGAATAATACCTGTTGAA-GGC
1 TTTTATTTAATTTAATACTCGTTTTAGAAATAAAATCAAAATTGGAATAAAACATGTTAAACGGC
* * **
7638777 AGAAATAAATCTCGAAACAGATTTTATTTAATTT-AATGTTCATTTTGGAAATAAAATAA
66 AGAAATAAATCACAAAACAGATTTTATTTAATTTAAATACTCATTTTGGAAATAAAATAA
* * * *
7638836 TTTTATTTAATTTTAATACTTGTTTTGGAAATAAAATTAAAATTGGAATAAAATATGTTAAACGG
1 TTTTATTTAA-TTTAATACTCGTTTTAGAAATAAAATCAAAATTGGAATAAAACATGTTAAACGG
* ** * *
7638901 TAGGGATAAATCACAAAATAGATTTTATTTAATTTAAATACTCGTTTTGGAAATAAAATAA
65 CAGAAATAAATCACAAAACAGATTTTATTTAATTTAAATACTCATTTTGGAAATAAAATAA
7638962 AAAATGTAAT
Statistics
Matches: 107, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
123 10 0.09
124 44 0.41
125 31 0.29
126 22 0.21
ACGTcount: A:0.43, C:0.06, G:0.12, T:0.39
Consensus pattern (125 bp):
TTTTATTTAATTTAATACTCGTTTTAGAAATAAAATCAAAATTGGAATAAAACATGTTAAACGGC
AGAAATAAATCACAAAACAGATTTTATTTAATTTAAATACTCATTTTGGAAATAAAATAA
Found at i:7638929 original size:87 final size:86
Alignment explanation
Indices: 7638835--7639112 Score: 283
Period size: 87 Copynumber: 3.2 Consensus size: 86
7638825 AAATAAAATA
* *
7638835 ATTTTATTTAATTTTAATACTTGTTTTGGAAATAAAATTAAAATTGGAATAAAATATGTTAAACG
1 ATTTTATTTAATTTTAATACTTGTTTTGGAAATAAAATAAAAAATGGAATAAAAT-TGTTAAACG
* * *
7638900 GTAGGGATAAATCACAAAATAG
65 GTAGGAATAAATCTCAAAACAG
* * * * *
7638922 ATTTTATTTAATTTAAATACTCGTTTTGGAAATAAAATAAAAAATGTAATAAAATTCATTGAACG
1 ATTTTATTTAATTTTAATACTTGTTTTGGAAATAAAATAAAAAATGGAATAAAATT-GTTAAACG
**
7638987 GT-GAGAATAAATCTTGAAACAG
65 GTAG-GAATAAATCTCAAAACAG
* * ** * * * * *
7639009 ATTTTATTT-ATCTCTAATTC-TCATTTAGAAATAAAATCAGAAGTGGAATAAAATCCGTTAAAC
1 ATTTTATTTAAT-TTTAATACTTGTTTTGGAAATAAAATAAAAAATGGAATAAAAT-TGTTAAAC
*
7639072 GGCAGGAATAAATCTCAAAACAG
64 GGTAGGAATAAATCTCAAAACAG
*
7639095 ATTTTATTTAACTTTAAT
1 ATTTTATTTAATTTTAAT
7639113 TTTTATTTTC
Statistics
Matches: 154, Mismatches: 31, Indels: 13
0.78 0.16 0.07
Matches are distributed among these distances:
86 67 0.44
87 87 0.56
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.36
Consensus pattern (86 bp):
ATTTTATTTAATTTTAATACTTGTTTTGGAAATAAAATAAAAAATGGAATAAAATTGTTAAACGG
TAGGAATAAATCTCAAAACAG
Found at i:7639081 original size:86 final size:84
Alignment explanation
Indices: 7638863--7639132 Score: 236
Period size: 86 Copynumber: 3.1 Consensus size: 84
7638853 ACTTGTTTTG
* * * * * *
7638863 GAAATAAAATTAAAATTGGAATAAAATATGTTAAACGGTAGGGATAAATCACAAAATAGATTTTA
1 GAAATAAAATAAAAAATGGAATAAAATACGTTAAACGG-AGGAATAAATCTCAAAACAGATTTTA
* * *
7638928 TTTAAT-TTAAATACTCGTTTTG
65 TTT-ATCTT-AATTCTC-ATTTA
* * * * * **
7638950 GAAATAAAATAAAAAATGTAATAAAATTCATTGAACGGTGAGAATAAATCTTGAAACAGATTTTA
1 GAAATAAAATAAAAAATGGAATAAAATACGTTAAACGGAG-GAATAAATCTCAAAACAGATTTTA
7639015 TTTATCTCTAATTCTCATTTA
65 TTTATCT-TAATTCTCATTTA
* * * *
7639036 GAAATAAAATCAGAAGTGGAATAAAATCCGTTAAACGGCAGGAATAAATCTCAAAACAGATTTTA
1 GAAATAAAATAAAAAATGGAATAAAATACGTTAAACGG-AGGAATAAATCTCAAAACAGATTTTA
* * * *
7639101 TTTAACTTTAATTTTTATTTT
65 TTTATC-TTAATTCTCATTTA
*
7639122 CAAATAAAATA
1 GAAATAAAATA
7639133 CTTTTTCTTT
Statistics
Matches: 146, Mismatches: 32, Indels: 11
0.77 0.17 0.06
Matches are distributed among these distances:
86 83 0.57
87 62 0.42
88 1 0.01
ACGTcount: A:0.46, C:0.09, G:0.12, T:0.34
Consensus pattern (84 bp):
GAAATAAAATAAAAAATGGAATAAAATACGTTAAACGGAGGAATAAATCTCAAAACAGATTTTAT
TTATCTTAATTCTCATTTA
Found at i:7642349 original size:183 final size:184
Alignment explanation
Indices: 7642033--7642367 Score: 464
Period size: 183 Copynumber: 1.8 Consensus size: 184
7642023 AGAATTCAGA
* * * *
7642033 ACACCCAATGGACAAACACTAAACCTGAGCCCCAAAAACATGCCCATTTTTCTATGTTCCCTAGG
1 ACACCCAATAGACAAACACTAAACCTGAGCCCCAAAAACAAGCCCAGTTTTCTATGCTCCCTAGG
* * * *
7642098 TTTAAGCACATGGAAACACATCATCCCATTAACCCGATATTTTACCAAGCTCTTCCTCACGACCC
66 TTTAAGCACATGAAAACACATCACCCCATTAACCCAATATTTTACCAAACTCTTCCTCACGACCC
*
7642163 TACAAAAGTCA-TTCCTATACAAACATGCCACAGAAATTACCAAACTCTTCCTC
131 TACAAAACTCATTTCCTATACAAACATGCCACAGAAATTACCAAACTCTTCCTC
* *
7642216 ACACCCAATAGACAAGCACTAAA-CTCGAG-CCCAAAAACAAGCGCAGTTTTCTATGCTCCCTAG
1 ACACCCAATAGACAAACACTAAACCT-GAGCCCCAAAAACAAGCCCAGTTTTCTATGCTCCCTAG
* * * *
7642279 GTTTGAA-CACTTGAAATACACTTTACCCCATTAACCCAATATTTTACCAAATTCTTCCTCAC-A
65 GTTT-AAGCACATGAAA-ACACATCACCCCATTAACCCAATATTTTACCAAACTCTTCCTCACGA
7642342 CCCCTACAAAACTCATTTCCTATACA
128 -CCCTACAAAACTCATTTCCTATACA
7642368 GAGACCCCAT
Statistics
Matches: 132, Mismatches: 15, Indels: 9
0.85 0.10 0.06
Matches are distributed among these distances:
182 44 0.33
183 78 0.59
184 10 0.08
ACGTcount: A:0.35, C:0.32, G:0.09, T:0.25
Consensus pattern (184 bp):
ACACCCAATAGACAAACACTAAACCTGAGCCCCAAAAACAAGCCCAGTTTTCTATGCTCCCTAGG
TTTAAGCACATGAAAACACATCACCCCATTAACCCAATATTTTACCAAACTCTTCCTCACGACCC
TACAAAACTCATTTCCTATACAAACATGCCACAGAAATTACCAAACTCTTCCTC
Found at i:7644221 original size:18 final size:18
Alignment explanation
Indices: 7644176--7644221 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
7644166 TTTACTGCAA
7644176 TATAACAATTTCTAAATT
1 TATAACAATTTCTAAATT
* *
7644194 TATCAA-AATTTTTCAATT
1 TAT-AACAATTTCTAAATT
7644212 TATAACAATT
1 TATAACAATT
7644222 AATATTGTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 2 0.08
18 20 0.83
19 2 0.08
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.46
Consensus pattern (18 bp):
TATAACAATTTCTAAATT
Found at i:7644465 original size:34 final size:35
Alignment explanation
Indices: 7644407--7644473 Score: 102
Period size: 34 Copynumber: 1.9 Consensus size: 35
7644397 CAAACACCAG
7644407 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
*
7644442 AAAATATTTTTCC-G-AAATCATTTTACGGAAAA
1 AAAATA-TTTTCCAGTAAATCATTTTACAGAAAA
7644474 TATTTTACTG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
34 17 0.57
35 7 0.23
36 6 0.20
ACGTcount: A:0.45, C:0.12, G:0.09, T:0.34
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:7649172 original size:21 final size:20
Alignment explanation
Indices: 7649155--7649197 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
7649145 ATACTAAATG
7649155 GTTTACCAAAATTTCTAAAA
1 GTTTACCAAAATTTCTAAAA
* *
7649175 GTTTACTAGAATTTCT-AAA
1 GTTTACCAAAATTTCTAAAA
7649194 GTTT
1 GTTT
7649198 TTCCTAAGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.37, C:0.12, G:0.09, T:0.42
Consensus pattern (20 bp):
GTTTACCAAAATTTCTAAAA
Found at i:7649362 original size:20 final size:19
Alignment explanation
Indices: 7649348--7649397 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 19
7649338 ATTTTCAAGA
7649348 ATTTACCAAATTTTTTTAAG
1 ATTTACCAAA-TTTTTTAAG
*
7649368 ATTTA-CTAATATTTTTAAG
1 ATTTACCAAAT-TTTTTAAG
7649387 ATTATACCAAA
1 ATT-TACCAAA
7649398 ATTTCTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
18 1 0.04
19 14 0.56
20 7 0.28
21 3 0.12
ACGTcount: A:0.40, C:0.10, G:0.04, T:0.46
Consensus pattern (19 bp):
ATTTACCAAATTTTTTAAG
Found at i:7649401 original size:20 final size:19
Alignment explanation
Indices: 7649335--7649401 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 19
7649325 TTTTTTTAAA
*
7649335 AAAATTTTCAAGAATTTACC
1 AAAATTTTTAAG-ATTTACC
* *
7649355 AAATTTTTTTAAGATTTACT
1 AAA-ATTTTTAAGATTTACC
*
7649375 AATATTTTTAAGATTATACC
1 AAAATTTTTAAGATT-TACC
7649395 AAAATTT
1 AAAATTT
7649402 CTAAACCTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
19 11 0.29
20 20 0.53
21 7 0.18
ACGTcount: A:0.42, C:0.09, G:0.04, T:0.45
Consensus pattern (19 bp):
AAAATTTTTAAGATTTACC
Found at i:7649883 original size:65 final size:65
Alignment explanation
Indices: 7649797--7649931 Score: 216
Period size: 65 Copynumber: 2.1 Consensus size: 65
7649787 GATTTTAAAG
* * *
7649797 TAAAGGTGTTTGTGGGTCGAGTCGAGTTGGACTTAAGTATAATATTAACATAATATAAAGTATTA
1 TAAATGTGTTTGTGGGTCGAGTCGAGTTAGACTTAAGCATAATATTAACATAATATAAAGTATTA
* * *
7649862 TAAATGTGTTTGTGGGTCGAGTCGAGTTATACTTAAGCATGATATTAACATAGTATAAAGTATTA
1 TAAATGTGTTTGTGGGTCGAGTCGAGTTAGACTTAAGCATAATATTAACATAATATAAAGTATTA
7649927 TAAAT
1 TAAAT
7649932 TTAAAAATAG
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (65 bp):
TAAATGTGTTTGTGGGTCGAGTCGAGTTAGACTTAAGCATAATATTAACATAATATAAAGTATTA
Found at i:7649952 original size:65 final size:65
Alignment explanation
Indices: 7649818--7649953 Score: 146
Period size: 65 Copynumber: 2.1 Consensus size: 65
7649808 GTGGGTCGAG
* * ***** * * *
7649818 TCGAGTTGGACTTAAGTATAATATTAACATAATATAAAGTATTATAAATGTGTTTGTGGGTCGAG
1 TCGAGTTAGACTTAAGCATAATATTAACATAATATAAAGTATTATAAATGTAAAAATAGGCCGAC
* * * *
7649883 TCGAGTTATACTTAAGCATGATATTAACATAGTATAAAGTATTATAAATTTAAAAATAGGCCGAC
1 TCGAGTTAGACTTAAGCATAATATTAACATAATATAAAGTATTATAAATGTAAAAATAGGCCGAC
7649948 TCGAGT
1 TCGAGT
7649954 CAAGTTCGGG
Statistics
Matches: 57, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
65 57 1.00
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.35
Consensus pattern (65 bp):
TCGAGTTAGACTTAAGCATAATATTAACATAATATAAAGTATTATAAATGTAAAAATAGGCCGAC
Found at i:7659059 original size:26 final size:28
Alignment explanation
Indices: 7659024--7659075 Score: 90
Period size: 26 Copynumber: 1.9 Consensus size: 28
7659014 TTTTTAAATT
7659024 AAAGGTTTAA-TTAAAA-TTTCAAAAAA
1 AAAGGTTTAATTTAAAATTTTCAAAAAA
7659050 AAAGGTTTAATTTAAAATTTTCAAAA
1 AAAGGTTTAATTTAAAATTTTCAAAA
7659076 TTTGAGAGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 10 0.42
27 6 0.25
28 8 0.33
ACGTcount: A:0.54, C:0.04, G:0.08, T:0.35
Consensus pattern (28 bp):
AAAGGTTTAATTTAAAATTTTCAAAAAA
Found at i:7659154 original size:31 final size:33
Alignment explanation
Indices: 7659093--7659161 Score: 88
Period size: 31 Copynumber: 2.2 Consensus size: 33
7659083 GGATTAATGT
* *
7659093 AAATTTTTAAAAAGTTTGCGGAAGGTCTAATTA
1 AAATTTTTAAAAACTTTGCGGAAGGCCTAATTA
*
7659126 AAATTTTT-AAAACTTT-TGGAAGGCCTAATTA
1 AAATTTTTAAAAACTTTGCGGAAGGCCTAATTA
*
7659157 GAATT
1 AAATT
7659162 CTAAAAAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 17 0.53
32 7 0.22
33 8 0.25
ACGTcount: A:0.39, C:0.07, G:0.16, T:0.38
Consensus pattern (33 bp):
AAATTTTTAAAAACTTTGCGGAAGGCCTAATTA
Found at i:7676573 original size:4 final size:4
Alignment explanation
Indices: 7676564--7676612 Score: 89
Period size: 4 Copynumber: 12.2 Consensus size: 4
7676554 AAAAATTCCA
*
7676564 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ATAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
7676612 A
1 A
7676613 ATTTATCTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 43 1.00
ACGTcount: A:0.51, C:0.22, G:0.00, T:0.27
Consensus pattern (4 bp):
ACAT
Found at i:7682507 original size:30 final size:30
Alignment explanation
Indices: 7682469--7682550 Score: 121
Period size: 30 Copynumber: 2.7 Consensus size: 30
7682459 GGGTAACCTC
7682469 GATATAATGTCAGCTTGTGTGAACAACTCT
1 GATATAATGTCAGCTTGTGTGAACAACTCT
* *
7682499 -ATTATAATGTCAGCTTGTATGAACAATTCT
1 GA-TATAATGTCAGCTTGTGTGAACAACTCT
*
7682529 GATATATTGTCAGCTTGTGTGA
1 GATATAATGTCAGCTTGTGTGA
7682551 GTAACTTATT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
29 1 0.02
30 44 0.96
31 1 0.02
ACGTcount: A:0.29, C:0.13, G:0.20, T:0.38
Consensus pattern (30 bp):
GATATAATGTCAGCTTGTGTGAACAACTCT
Found at i:7683441 original size:23 final size:21
Alignment explanation
Indices: 7683389--7683448 Score: 70
Period size: 23 Copynumber: 2.8 Consensus size: 21
7683379 AGTTGAATAT
7683389 GTTTAAATG-TTGAATGGTTG
1 GTTTAAATGATTGAATGGTTG
*
7683409 G-GTAATATGATATAGAATGGTTG
1 GTTTAA-ATGAT-T-GAATGGTTG
7683432 GTTTAAATGATTGAATG
1 GTTTAAATGATTGAATG
7683449 CTTGAATTGG
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
19 3 0.09
20 4 0.12
21 6 0.18
22 2 0.06
23 15 0.45
24 3 0.09
ACGTcount: A:0.32, C:0.00, G:0.28, T:0.40
Consensus pattern (21 bp):
GTTTAAATGATTGAATGGTTG
Found at i:7684860 original size:43 final size:43
Alignment explanation
Indices: 7684768--7684924 Score: 226
Period size: 43 Copynumber: 3.7 Consensus size: 43
7684758 ATGTTCCAAT
*
7684768 ATCGATTTGAGATTTCGTG-AAGACTATAGCTGGGCTATTGGC
1 ATCGATTTGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGC
* * * *
7684810 ATTGATTTGAGATTTCGTGTAAGACCATAACTGGGCTGTTGAC
1 ATCGATTTGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGC
7684853 ATCGATTTGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGC
1 ATCGATTTGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGC
** *
7684896 ATCGATACGAGATTTCCATGTAAGACCAT
1 ATCGATTTGAGATTT-CGTGTAAGACCAT
7684925 GTTTGGGACA
Statistics
Matches: 101, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
42 18 0.18
43 71 0.70
44 12 0.12
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.32
Consensus pattern (43 bp):
ATCGATTTGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGC
Found at i:7686375 original size:20 final size:19
Alignment explanation
Indices: 7686347--7686385 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
7686337 TTTAAATAAT
*
7686347 TTTTTATTTTAAAAGTTTTA
1 TTTTAATTTTAAAA-TTTTA
7686367 TTTTAATTTTAAAATTTTA
1 TTTTAATTTTAAAATTTTA
7686386 GGAATCAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (19 bp):
TTTTAATTTTAAAATTTTA
Found at i:7686892 original size:15 final size:15
Alignment explanation
Indices: 7686855--7686885 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7686845 GTTCAATTGG
*
7686855 CTGGTCGGGTCTGGT
1 CTGGTCGGGTCGGGT
7686870 CTGGTCGGGTCGGGT
1 CTGGTCGGGTCGGGT
7686885 C
1 C
7686886 GGATCGGTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.00, C:0.23, G:0.48, T:0.29
Consensus pattern (15 bp):
CTGGTCGGGTCGGGT
Found at i:7686899 original size:5 final size:5
Alignment explanation
Indices: 7686893--7686927 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
7686883 GTCGGATCGG
*
7686893 TTTGG TTTGAT TTTGT TTTGT TTTGT TTTGT TTTG
1 TTTGT TTTG-T TTTGT TTTGT TTTGT TTTGT TTTG
7686928 GGGCAATTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
5 24 0.86
6 4 0.14
ACGTcount: A:0.03, C:0.00, G:0.23, T:0.74
Consensus pattern (5 bp):
TTTGT
Found at i:7692003 original size:20 final size:20
Alignment explanation
Indices: 7691967--7692004 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7691957 AAACTATTTA
*
7691967 TCCCTTCACTTCTATTTTTT
1 TCCCTTCACATCTATTTTTT
7691987 TCCCTT-ACATCTCATTTT
1 TCCCTTCACATCT-ATTTT
7692005 ACTTTCAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.13, C:0.32, G:0.00, T:0.55
Consensus pattern (20 bp):
TCCCTTCACATCTATTTTTT
Found at i:7692538 original size:10 final size:10
Alignment explanation
Indices: 7692523--7692555 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
7692513 TCAATATTCT
7692523 CTCAAATTTC
1 CTCAAATTTC
7692533 CTCAAATTTC
1 CTCAAATTTC
7692543 TCTCAAA-TTC
1 -CTCAAATTTC
7692553 CTC
1 CTC
7692556 TTTAATTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 3 0.14
10 13 0.59
11 6 0.27
ACGTcount: A:0.27, C:0.33, G:0.00, T:0.39
Consensus pattern (10 bp):
CTCAAATTTC
Found at i:7692549 original size:11 final size:11
Alignment explanation
Indices: 7692519--7692556 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
7692509 TATTTCAATA
7692519 TTCTCTCAAAT
1 TTCTCTCAAAT
7692530 TTC-CTCAAAT
1 TTCTCTCAAAT
7692540 TTCTCTCAAAT
1 TTCTCTCAAAT
*
7692551 TCCTCT
1 TTCTCT
7692557 TTAATTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 10 0.40
11 15 0.60
ACGTcount: A:0.24, C:0.32, G:0.00, T:0.45
Consensus pattern (11 bp):
TTCTCTCAAAT
Found at i:7694253 original size:30 final size:30
Alignment explanation
Indices: 7694219--7694310 Score: 89
Period size: 30 Copynumber: 3.1 Consensus size: 30
7694209 CGATGCAGGT
*
7694219 CCATCAACAACACCCACACAATCACTCGAC
1 CCATCAACAGCACCCACACAATCACTCGAC
* * * *
7694249 CCATCAACAGCGCTCATACAATCACT-GGC
1 CCATCAACAGCACCCACACAATCACTCGAC
* * *
7694278 CCAGCAATAGCACCCACACAGTCAC-CGAGC
1 CCATCAACAGCACCCACACAATCACTCGA-C
7694308 CCA
1 CCA
7694311 ACACTTCAAC
Statistics
Matches: 48, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
29 22 0.46
30 26 0.54
ACGTcount: A:0.35, C:0.43, G:0.11, T:0.11
Consensus pattern (30 bp):
CCATCAACAGCACCCACACAATCACTCGAC
Found at i:7706985 original size:17 final size:17
Alignment explanation
Indices: 7706963--7707001 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
7706953 TTTGTATGTT
* *
7706963 TTATTTAACTTATTTTA
1 TTATTTAACATATATTA
7706980 TTATTTAACATATATTA
1 TTATTTAACATATATTA
7706997 TTATT
1 TTATT
7707002 AAATAAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (17 bp):
TTATTTAACATATATTA
Found at i:7707029 original size:16 final size:16
Alignment explanation
Indices: 7706983--7707031 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
7706973 TATTTTATTA
*
7706983 TTTAACATAT-ATTAT
1 TTTAACATATAAATAT
7706998 TATTAA-ATA-AATATAT
1 T-TTAACATATAA-ATAT
7707014 TTTAACATATAAATAT
1 TTTAACATATAAATAT
7707030 TT
1 TT
7707032 AATGACAACC
Statistics
Matches: 28, Mismatches: 1, Indels: 9
0.74 0.03 0.24
Matches are distributed among these distances:
15 9 0.32
16 17 0.61
17 2 0.07
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (16 bp):
TTTAACATATAAATAT
Found at i:7711045 original size:30 final size:30
Alignment explanation
Indices: 7711009--7711072 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 30
7710999 CAACTTAACA
*
7711009 AACAAATGCCTCTAAAATAATAACAAAATT
1 AACAAATACCTCTAAAATAATAACAAAATT
7711039 AACAAATACCTCTAAAATAATAACAAAATT
1 AACAAATACCTCTAAAATAATAACAAAATT
7711069 AACA
1 AACA
7711073 GTAAAACAAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.59, C:0.17, G:0.02, T:0.22
Consensus pattern (30 bp):
AACAAATACCTCTAAAATAATAACAAAATT
Found at i:7711116 original size:11 final size:11
Alignment explanation
Indices: 7711102--7711149 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
7711092 ATACCTAAAC
*
7711102 AATAATAACAA
1 AATAATAGCAA
*
7711113 AATAGTAGCAA
1 AATAATAGCAA
* *
7711124 CATAATAGTAA
1 AATAATAGCAA
*
7711135 AATAGTAGCAA
1 AATAATAGCAA
7711146 AATA
1 AATA
7711150 GGGAGAAAAC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.60, C:0.08, G:0.10, T:0.21
Consensus pattern (11 bp):
AATAATAGCAA
Found at i:7711128 original size:22 final size:22
Alignment explanation
Indices: 7711103--7711145 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
7711093 TACCTAAACA
7711103 ATAATAACAAAATAGTAGCAAC
1 ATAATAACAAAATAGTAGCAAC
**
7711125 ATAATAGTAAAATAGTAGCAA
1 ATAATAACAAAATAGTAGCAA
7711146 AATAGGGAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.58, C:0.09, G:0.12, T:0.21
Consensus pattern (22 bp):
ATAATAACAAAATAGTAGCAAC
Found at i:7711150 original size:11 final size:11
Alignment explanation
Indices: 7711110--7711150 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
7711100 ACAATAATAA
7711110 CAAAATAGTAG
1 CAAAATAGTAG
* *
7711121 CAACATAATAG
1 CAAAATAGTAG
*
7711132 TAAAATAGTAG
1 CAAAATAGTAG
7711143 CAAAATAG
1 CAAAATAG
7711151 GGAGAAAACA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:7711798 original size:51 final size:51
Alignment explanation
Indices: 7711722--7711827 Score: 194
Period size: 51 Copynumber: 2.1 Consensus size: 51
7711712 TATTTATCCC
7711722 AAAAATATATTATCAAATGGGATAAGTCACATTTGGTATCTGTACTTTCAT
1 AAAAATATATTATCAAATGGGATAAGTCACATTTGGTATCTGTACTTTCAT
* *
7711773 AAAAATATATTATCAAATTGGATAAGTTACATTTGGTATCTGTACTTTCAT
1 AAAAATATATTATCAAATGGGATAAGTCACATTTGGTATCTGTACTTTCAT
7711824 AAAA
1 AAAA
7711828 TGTCCAATGC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (51 bp):
AAAAATATATTATCAAATGGGATAAGTCACATTTGGTATCTGTACTTTCAT
Found at i:7711911 original size:63 final size:63
Alignment explanation
Indices: 7711806--7711936 Score: 183
Period size: 63 Copynumber: 2.1 Consensus size: 63
7711796 AAGTTACATT
* * * * * *
7711806 TGGTATCTGTACTTTCATAAAATGTCCAATGCGGTACCTGAACTATCTA-TTTGTGTTTTATTA
1 TGGTACCTATACTTTCATAAAATGTCCAATGCAGCACATGAACTATC-AGTATGTGTTTTATTA
*
7711869 TGGTACCTATACTTTCATAAAATGTCCAATGTAGCACATGAACTATCAGTATGTGTTTTATTA
1 TGGTACCTATACTTTCATAAAATGTCCAATGCAGCACATGAACTATCAGTATGTGTTTTATTA
7711932 TGGTA
1 TGGTA
7711937 TCTAATGTTA
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
62 1 0.02
63 59 0.98
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.40
Consensus pattern (63 bp):
TGGTACCTATACTTTCATAAAATGTCCAATGCAGCACATGAACTATCAGTATGTGTTTTATTA
Found at i:7719060 original size:132 final size:132
Alignment explanation
Indices: 7718904--7720683 Score: 2223
Period size: 132 Copynumber: 13.5 Consensus size: 132
7718894 ACCAGAGAGA
* * * * * * * **
7718904 TAGAATTACTGGC-TCTAATATACTCCGCTGCAACCTCAAGGAGGTAAAATCTGCCATTTTTTAT
1 TAGAATTACTGGCTTC-AATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGAT
* * * * *
7718968 CTGCTTCACTACTGCTTAGGGAGATAAGATCTGTAATCTTTAATCTATTCCACTGTTGCCCAAGG
65 CTGCTTCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGG
7719033 -AG
130 AAG
* * *
7719035 ATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACTATCTTCGAT
1 -TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGAT
* * * *
7719100 TTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGG
65 CTGCTTCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGG
7719165 AAG
130 AAG
*
7719168 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATC
* * * *
7719233 TGCTCCACTACTGTTTAGGGAGACAATATATGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
66 TGCTTCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
7719298 AG
131 AG
* * * * *
7719300 TAGAATTATTGGCTTCAATGTACTCCACTGTAACCATAGGGAGGTAAAATCTGTCGTCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATC
* * *
7719365 TGCTTCGCT-GT-C-TATGCGAGAAGACAAGATCTAAAATCTTCAATCTATTCCACTGCTGCCCA
66 TGCTTCACTACTGCTTA-G-G-G-AGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCA
*
7719427 AGG-AG
127 GGGAAG
* *
7719432 ATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAAGGAGGTAAAATCCACCATCTTCGAT
1 -TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGAT
* * * * *
7719497 CTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATATTCAATCTATTCCACTGCTGCCCAGGG
65 CTGCTTCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGG
7719562 AAG
130 AAG
* * *
7719565 TAGAATTACTGGCTTTAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTTGATT
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATC
* * * * *
7719630 TGCTCCACTACTGTTTAGGGAGACAATATATGAAATCTTCAATCTATTACACTGCTGCCCAGGGA
66 TGCTTCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
7719695 AG
131 AG
* * * *
7719697 TAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGTCGTCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATC
* * * * *
7719762 TGCTTCGCT-GT-C-TATGCGAGAAGGCAAGATCTAAAATCTTCAGTCTATTCCACTGCTGCCCA
66 TGCTTCACTACTGCTTA-G-G-G-AGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCA
7719824 GGG-AG
127 GGGAAG
* * *
7719829 ATAGAATTACTGGCTTCAATGTACTCCACTGTAACTATAGGGAGGTAAAATCCACCATCTTCGAT
1 -TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGAT
* * * * *
7719894 TTG-TTCCACTACTGCTTAGGGAGATAAAATCTGTAATCTTCAATCTATTCCACTACTGCCCAGG
65 CTGCTT-CACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGG
7719958 GAAG
129 GAAG
* *
7719962 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATC
* * * *
7720027 TGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGCTGCCCAGGGA
66 TGCTTCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
7720092 AG
131 AG
*
7720094 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATC
* * * *
7720159 TGCTCCACTACTGTTTAGGGAGACAATATATGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
66 TGCTTCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
7720224 AG
131 AG
* * * * *
7720226 TAGAATTATTGGCTTCAATGTACTCTACTGTAACCACAGGGAGGTAAAATCTGTCGTCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATC
* * * * *
7720291 TGCTTCGCT-GT-C-TATGCGAGAAGACAAGATCTAAAATCTTCAGTCTATTCCATTGCTGCCCA
66 TGCTTCACTACTGCTTA-G-G-G-AGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCA
*
7720353 AGG-AG
127 GGGAAG
* * * *
7720358 ATAGAATTACTGGCTTCAATGTACTCTACTGTAACCACAGGGAGGTAAAATCTGTCGTCTTCGAT
1 -TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGAT
* * * * * *
7720423 CTGCTTCGCT-GT-C-TATGCGAGAAGGCAAGATCTAAAATCTTCAGTCTATTCCACTGCTGCCT
65 CTGCTTCACTACTGCTTA-G-G-G-AGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCC
7720485 AGGG-AG
126 AGGGAAG
* * *
7720491 ATAGAATTACTGGCTTCAATGTACTCCACTGTAACTACAGGGAGGTAAAATCCACCATCTTCTAT
1 -TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGAT
* * * * *
7720556 TTG-TTCCACTACTACTTAGGGAGATAAGATCTGTAATCTTTAATCTATTCCACTGCTGCCCAGG
65 CTGCTT-CACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGG
7720620 GAAG
129 GAAG
* *
7720624 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCTT
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTT
7720684 TAATCTACTT
Statistics
Matches: 1457, Mismatches: 159, Indels: 64
0.87 0.09 0.04
Matches are distributed among these distances:
129 6 0.00
130 3 0.00
131 6 0.00
132 978 0.67
133 447 0.31
134 5 0.00
135 6 0.00
136 6 0.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.29
Consensus pattern (132 bp):
TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATC
TGCTTCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
AG
Found at i:7719165 original size:44 final size:44
Alignment explanation
Indices: 7718985--7719165 Score: 111
Period size: 44 Copynumber: 4.1 Consensus size: 44
7718975 ACTACTGCTT
* * *
7718985 AGGGAGATAAGATCTGTAATCTTTAATCTATTCCACTGTTGCCC
1 AGGGAGATAAGATCTGTAATCTTCAATCTACTCCACTGCTGCCC
* * * * *
7719029 AAGGAGAT-AGA-AT-TACTGGCTTCAATGTACTCCACTG-TAACCTC
1 AGGGAGATAAGATCTGTAAT--CTTCAATCTACTCCACTGCT-GCC-C
* * ** * * * * **
7719073 AGGGAGGTAAAATCCACT-ATCTTCGATTTGCTCCACTACTGCTT
1 AGGGAGATAAGAT-CTGTAATCTTCAATCTACTCCACTGCTGCCC
*
7719117 AGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCC
1 AGGGAGATAAGATCTGTAATCTTCAATCTACTCCACTGCTGCCC
7719161 AGGGA
1 AGGGA
7719166 AGTAGAATTA
Statistics
Matches: 96, Mismatches: 31, Indels: 20
0.65 0.21 0.14
Matches are distributed among these distances:
41 3 0.03
42 2 0.02
43 22 0.23
44 49 0.51
45 17 0.18
46 1 0.01
47 1 0.01
48 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (44 bp):
AGGGAGATAAGATCTGTAATCTTCAATCTACTCCACTGCTGCCC
Found at i:7719461 original size:397 final size:396
Alignment explanation
Indices: 7718904--7720683 Score: 2311
Period size: 397 Copynumber: 4.5 Consensus size: 396
7718894 ACCAGAGAGA
* * * * * * * **
7718904 TAGAATTACTGGC-TCTAATATACTCCGCTGCAACCTCAAGGAGGTAAAATCTGCCATTTTTTAT
1 TAGAATTACTGGCTTC-AATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGAT
* * * * *
7718968 CTGCTTCACTACTGCT-TAG-GG-AGATAAGATCTGTAATCTTTAATCTATTCCACTGTTGCCCA
65 CTGCTTCACT-GT-CTAT-GCGGAAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCA
* * *
7719030 AGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACTATCT
127 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCT
*
7719095 TCGATTTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCC
192 TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCC
7719160 CAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCAT
257 CAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCAT
* *
7719225 CTTTGATCTGCTCCACTACTGTTTAGGGAGACAATATATGAAATCTTCAATCTATTCCACTGCTG
322 CTTCGATCTGCTCCACTACTGTTTAGGGAGACAAGATATGAAATCTTCAATCTATTCCACTGCTG
7719290 CCCAGGGAAG
387 CCCAGGGAAG
* * * * *
7719300 TAGAATTATTGGCTTCAATGTACTCCACTGTAACCATAGGGAGGTAAAATCTGTCGTCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATC
* * *
7719365 TGCTTCGCTGTCTATGCGAGAAGACAAGATCTAAAATCTTCAATCTATTCCACTGCTGCCCAAGG
66 TGCTTCACTGTCTATGCG-GAAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGG
*
7719430 AGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAAGGAGGTAAAATCCACCATCTTCG
130 AGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCG
* *
7719495 ATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATATTCAATCTATTCCACTGCTGCCCAG
195 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAG
*
7719560 GGAAGTAGAATTACTGGCTTTAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTT
260 GGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTT
* * * *
7719625 TGATTTGCTCCACTACTGTTTAGGGAGACAATATATGAAATCTTCAATCTATTACACTGCTGCCC
325 CGATCTGCTCCACTACTGTTTAGGGAGACAAGATATGAAATCTTCAATCTATTCCACTGCTGCCC
7719690 AGGGAAG
390 AGGGAAG
* * * *
7719697 TAGAATTATTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGTCGTCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATC
* * * *
7719762 TGCTTCGCTGTCTATGCGAGAAGGCAAGATCTAAAATCTTCAGTCTATTCCACTGCTGCCCAGGG
66 TGCTTCACTGTCTATGCG-GAAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGG
* *
7719827 AGATAGAATTACTGGCTTCAATGTACTCCACTGTAACTATAGGGAGGTAAAATCCACCATCTTCG
130 AGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCG
* * * *
7719892 ATTTGTTCCACTACTGCTTAGGGAGATAAAATCTGTAATCTTCAATCTATTCCACTACTGCCCAG
195 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAG
* *
7719957 GGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTT
260 GGAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTT
* * * * *
7720022 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGCTGCCC
325 CGATCTGCTCCACTACTGTTTAGGGAGACAAGATATGAAATCTTCAATCTATTCCACTGCTGCCC
7720087 AGGGAAG
390 AGGGAAG
*
7720094 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTTGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATC
* * * *
7720159 TGCTCCACTACTGTTTA-G-GG-AGACAATATATGAAATCTTCAATCTATTCCACTGCTGCCCAG
66 TGCT--TC-ACTGTCTATGCGGAAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAG
* * *** *
7720221 GGA-AGTAGAATTATTGGCTTCAATGTACTCTACTGTAACCACAGGGAGGTAAAATCTGTCGTCT
128 GGAGA-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCT
* * * * ** * *
7720285 TCGATCTGCTTCGCTGTCTA-TGC-GA-GAAGACAAGATCTAAAATCTTCAGTCTATTCCATTGC
192 TCGATCTGC-TC-C--ACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGC
* * *
7720347 TGCCCAAGG-AGATAGAATTACTGGCTTCAATGTACTCTACTGTAACCACAGGGAGGTAAAATCT
253 TGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCC
* * * * * * * * *
7720411 GTCGTCTTCGATCTGCT--TC-GCTGTCTATGCGAGAAGGCAAGATCTAAAATCTTCAGTCTATT
317 GCCATCTTCGATCTGCTCCACTACTGTTTA-G-G-G-AGACAAGATATGAAATCTTCAATCTATT
*
7720473 CCACTGCTGCCTAGGG-AG
378 CCACTGCTGCCCAGGGAAG
* * *
7720491 ATAGAATTACTGGCTTCAATGTACTCCACTGTAACTACAGGGAGGTAAAATCCACCATCTTCTAT
1 -TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGAT
* * ** * * * *
7720556 TTG-TTCCACT-ACTACTTAGGGAGATAAGATCTGTAATCTTTAATCTATTCCACTGCTGCCCAG
65 CTGCTT-CACTGTCTA-TGCGGAAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAG
*
7720619 GGA-AGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATTCACCATCT
128 GGAGA-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCT
7720683 T
192 T
7720684 TAATCTACTT
Statistics
Matches: 1235, Mismatches: 125, Indels: 46
0.88 0.09 0.03
Matches are distributed among these distances:
394 10 0.01
395 9 0.01
396 161 0.13
397 844 0.68
398 197 0.16
399 5 0.00
400 9 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.29
Consensus pattern (396 bp):
TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATC
TGCTTCACTGTCTATGCGGAAGACAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA
GATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCATCTTCGA
TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGG
GAAGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTC
GATCTGCTCCACTACTGTTTAGGGAGACAAGATATGAAATCTTCAATCTATTCCACTGCTGCCCA
GGGAAG
Found at i:7719764 original size:529 final size:530
Alignment explanation
Indices: 7718872--7720684 Score: 2714
Period size: 529 Copynumber: 3.4 Consensus size: 530
7718862 AGATCTGCTT
* * * * * * * * *
7718872 TCTTCGATCGATTCCACTACCGACCAGAGAGATAGAATTACTGGC-TCTAATATACTCCGCTGCA
1 TCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTC-AATGTACTCCACTGTA
* ** * ** *
7718936 ACCTCAAGGAGGTAAAATCTGCCATTTTTTATCTGCTTCACTACTGCTTAGGGAGATAAGATCTG
65 ACCACAAGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
* * * *
7719001 TAATCTTTAATCTATTCCACTGTTGCCCAAGG-AGATAGAATTACTGGCTTCAATGTACTCCACT
130 TAATATTCAATCTATTCCACTGCTGCCCAGGGAAG-TAGAATTACTGGCTTCAATGTACTCCACT
* * * * * *
7719065 GTAACCTCAGGGAGGTAAAATCCACTATCTTCGATTTGCTCCACTACTGCTTAGGGAGATAAGAT
194 GTAACCACAGGGAGGTAAAATCCACCATCTTTGATTTGCTCCACTACTGTTTAGGGAGACAATAT
* * *
7719130 CTGTAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCA
259 ATGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTATTGGCTTCAATGTACTCCA
* * * * * * *
7719195 CTGTAACCACAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCACTACTGTTTA-G-G-G-AGA
324 CTGTAACCACAGGGAGGTAAAATCTGTCGTCTTCGATCTGCT--TC-GCTGTCTATGCGAGAAGA
* * * * *
7719256 CAATATATGAAATCTTCAATCTATTCCACTGCTGCCCAGGGA-AGTAGAATTATTGGCTTCAATG
386 CAAGATCTAAAATCTTCAGTCTATTCCACTGCTGCCCAGGGAGA-TAGAATTACTGGCTTCAATG
7719320 TACTCCACTGTAACCATAGGGAGGTAAAATCTGTCGTCTTCGATCTGCTTCGCTGTCTATGCGAG
450 TACTCCACTGTAACCATAGGGAGGTAAAATCTGTCGTCTTCGATCTGCTTCGCTGTCTATGCGAG
7719385 AAGACAAGATCTAAAA
515 AAGACAAGATCTAAAA
*
7719401 TCTTCAATCTATTCCACTGCTGCCCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
1 TCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
*
7719466 CCACAAGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGT
66 CCACAAGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT
*
7719531 AATATTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTTAATGTACTCCACTGT
131 AATATTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
*
7719596 AACCACAGGGAGGTAAAATCCGCCATCTTTGATTTGCTCCACTACTGTTTAGGGAGACAATATAT
196 AACCACAGGGAGGTAAAATCCACCATCTTTGATTTGCTCCACTACTGTTTAGGGAGACAATATAT
*
7719661 GAAATCTTCAATCTATTACACTGCTGCCCAGGGAAGTAGAATTATTGGCTTCAATGTACTCCACT
261 GAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTATTGGCTTCAATGTACTCCACT
*
7719726 GTAACCACAGGGAGGTAAAATCTGTCGTCTTCGATCTGCTTCGCTGTCTATGCGAGAAGGCAAGA
326 GTAACCACAGGGAGGTAAAATCTGTCGTCTTCGATCTGCTTCGCTGTCTATGCGAGAAGACAAGA
7719791 TCTAAAATCTTCAGTCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCC
391 TCTAAAATCTTCAGTCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCC
* *** * * * * *
7719856 ACTGTAACTATAGGGAGGTAAAATCCACCATCTTCGATTTG-TTC-C--ACTACTGCTTAGGGAG
456 ACTGTAACCATAGGGAGGTAAAATCTGTCGTCTTCGATCTGCTTCGCTGTCTA-TGC-GA-GAAG
* * **
7719917 ATAAAATCTGTAA
518 ACAAGATCTAAAA
*
7719930 TCTTCAATCTATTCCACTACTGCCCAGGGA-AGTAGAATTACTGGCTTCAATGTACTCCACTGTA
1 TCTTCAATCTATTCCACTGCTGCCCAGGGAGA-TAGAATTACTGGCTTCAATGTACTCCACTGTA
* *
7719994 ACCTCAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
65 ACCACAAGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
7720059 TAATATTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTG
130 TAATATTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTG
* *
7720124 TAACCACAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCACTACTGTTTAGGGAGACAATATA
195 TAACCACAGGGAGGTAAAATCCACCATCTTTGATTTGCTCCACTACTGTTTAGGGAGACAATATA
*
7720189 TGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTATTGGCTTCAATGTACTCTAC
260 TGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTATTGGCTTCAATGTACTCCAC
7720254 TGTAACCACAGGGAGGTAAAATCTGTCGTCTTCGATCTGCTTCGCTGTCTATGCGAGAAGACAAG
325 TGTAACCACAGGGAGGTAAAATCTGTCGTCTTCGATCTGCTTCGCTGTCTATGCGAGAAGACAAG
* *
7720319 ATCTAAAATCTTCAGTCTATTCCATTGCTGCCCAAGGAGATAGAATTACTGGCTTCAATGTACTC
390 ATCTAAAATCTTCAGTCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTC
* * *
7720384 TACTGTAACCACAGGGAGGTAAAATCTGTCGTCTTCGATCTGCTTCGCTGTCTATGCGAGAAGGC
455 CACTGTAACCATAGGGAGGTAAAATCTGTCGTCTTCGATCTGCTTCGCTGTCTATGCGAGAAGAC
7720449 AAGATCTAAAA
520 AAGATCTAAAA
* *
7720460 TCTTCAGTCTATTCCACTGCTGCCTAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
1 TCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
* * * * * *
7720525 CTACAGGGAGGTAAAATCCACCATCTTCTATTTGTTCCACTACTACTTAGGGAGATAAGATCTGT
66 CCACAAGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT
* *
7720590 AATCTTTAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
131 AATATTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
*
7720655 AACCACAGGGAGGTAAAATTCACCATCTTT
196 AACCACAGGGAGGTAAAATCCACCATCTTT
7720685 AATCTACTTC
Statistics
Matches: 1167, Mismatches: 101, Indels: 31
0.90 0.08 0.02
Matches are distributed among these distances:
526 9 0.01
527 5 0.00
528 4 0.00
529 811 0.69
530 328 0.28
531 4 0.00
532 3 0.00
533 3 0.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.29
Consensus pattern (530 bp):
TCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
CCACAAGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT
AATATTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
AACCACAGGGAGGTAAAATCCACCATCTTTGATTTGCTCCACTACTGTTTAGGGAGACAATATAT
GAAATCTTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAATTATTGGCTTCAATGTACTCCACT
GTAACCACAGGGAGGTAAAATCTGTCGTCTTCGATCTGCTTCGCTGTCTATGCGAGAAGACAAGA
TCTAAAATCTTCAGTCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCC
ACTGTAACCATAGGGAGGTAAAATCTGTCGTCTTCGATCTGCTTCGCTGTCTATGCGAGAAGACA
AGATCTAAAA
Found at i:7719914 original size:44 final size:44
Alignment explanation
Indices: 7719866--7720048 Score: 120
Period size: 44 Copynumber: 4.2 Consensus size: 44
7719856 ACTGTAACTA
* * **
7719866 TAGGGAGGTAAAATCCACCATCTTCGATTTGTTCCACTACTGCT
1 TAGGGAGGTAAAATCCACCATCTTCAATCTACTCCACTACTGCT
* **** * *
7719910 TAGGGAGATAAAATCTGTAATCTTCAATCTATTCCACTACTGCC
1 TAGGGAGGTAAAATCCACCATCTTCAATCTACTCCACTACTGCT
* * * * *** *
7719954 CAGGGAAGTAGAAT-TACTGGCTTCAATGTACTCCACTGTAAC--CT
1 TAGGGAGGTAAAATCCACCATCTTCAATCTACTCCAC--T-ACTGCT
* * *
7719998 CAGGGAGGTAAAATCCACCATCTTCGATCTGCTCCACTACTGCT
1 TAGGGAGGTAAAATCCACCATCTTCAATCTACTCCACTACTGCT
7720042 TAGGGAG
1 TAGGGAG
7720049 ATAAGATCTG
Statistics
Matches: 102, Mismatches: 31, Indels: 12
0.70 0.21 0.08
Matches are distributed among these distances:
42 2 0.02
43 16 0.16
44 66 0.65
45 16 0.16
46 2 0.02
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (44 bp):
TAGGGAGGTAAAATCCACCATCTTCAATCTACTCCACTACTGCT
Found at i:7720121 original size:43 final size:44
Alignment explanation
Indices: 7719931--7720123 Score: 112
Period size: 44 Copynumber: 4.4 Consensus size: 44
7719921 AATCTGTAAT
* *
7719931 CTTCAATCTATTCCACTACTGCCCAGGGAAGTAGAAT-TACTGG
1 CTTCAATCTACTCCACTGCTGCCCAGGGAAGTAGAATCTACTGG
* * * * * ***
7719974 CTTCAATGTACTCCACTG-TAACCTCAGGGAGGTAAAATCCACCAT
1 CTTCAATCTACTCCACTGCT-GCC-CAGGGAAGTAGAATCTACTGG
* * * ** *
7720019 CTTCGATCTGCTCCACTACTGCTTAGGG-AGATA-AGATCTGTAAT--
1 CTTCAATCTACTCCACTGCTGCCCAGGGAAG-TAGA-ATC--TACTGG
* *
7720063 ATTCAATCTATTCCACTGCTGCCCAGGGAAGTAGAAT-TACTGG
1 CTTCAATCTACTCCACTGCTGCCCAGGGAAGTAGAATCTACTGG
*
7720106 CTTCAATGTACTCCACTG
1 CTTCAATCTACTCCACTG
7720124 TAACCACAGG
Statistics
Matches: 106, Mismatches: 32, Indels: 24
0.65 0.20 0.15
Matches are distributed among these distances:
41 3 0.03
42 1 0.01
43 34 0.32
44 46 0.43
45 20 0.19
46 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.28
Consensus pattern (44 bp):
CTTCAATCTACTCCACTGCTGCCCAGGGAAGTAGAATCTACTGG
Found at i:7722066 original size:14 final size:15
Alignment explanation
Indices: 7722047--7722084 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
7722037 AGCCCCTCCA
7722047 TTTTATTTTTCAT-T
1 TTTTATTTTTCATCT
7722061 TTTTA-TTTTCATCT
1 TTTTATTTTTCATCT
*
7722075 TTTCATTTTT
1 TTTTATTTTT
7722085 TCACATCATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 7 0.33
14 10 0.48
15 4 0.19
ACGTcount: A:0.13, C:0.11, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTATTTTTCATCT
Found at i:7722078 original size:21 final size:19
Alignment explanation
Indices: 7722046--7722085 Score: 62
Period size: 21 Copynumber: 2.0 Consensus size: 19
7722036 TAGCCCCTCC
7722046 ATTTTATTTTTCATTTTTT
1 ATTTTATTTTTCATTTTTT
7722065 ATTTTCATCTTTTCATTTTTT
1 ATTTT-AT-TTTTCATTTTTT
7722086 CACATCATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.26
20 2 0.11
21 12 0.63
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (19 bp):
ATTTTATTTTTCATTTTTT
Found at i:7723052 original size:19 final size:19
Alignment explanation
Indices: 7723028--7723067 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
7723018 GGTTTGGCAG
7723028 AAAAAATCCAAAAGAATGA
1 AAAAAATCCAAAAGAATGA
**
7723047 AAAAAATCGTAAAGAATGA
1 AAAAAATCCAAAAGAATGA
7723066 AA
1 AA
7723068 GAACATTTGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.68, C:0.07, G:0.12, T:0.12
Consensus pattern (19 bp):
AAAAAATCCAAAAGAATGA
Found at i:7724964 original size:19 final size:19
Alignment explanation
Indices: 7724940--7724986 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
7724930 AACTATGTTT
*
7724940 AATGCATATG-ATGTAATG
1 AATGCATATGCATGAAATG
*
7724958 AAATGCAAATGCATGAAATG
1 -AATGCATATGCATGAAATG
7724978 AATGCATAT
1 AATGCATAT
7724987 AGAGACGTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.45, C:0.09, G:0.19, T:0.28
Consensus pattern (19 bp):
AATGCATATGCATGAAATG
Found at i:7735041 original size:22 final size:23
Alignment explanation
Indices: 7735016--7735062 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
7735006 TCGTTTTCGA
*
7735016 TTCTATT-AAAAATTTTAGAAGT
1 TTCTATTGAAAAATATTAGAAGT
* *
7735038 TTCTATTGATAAATATTAGATGT
1 TTCTATTGAAAAATATTAGAAGT
7735061 TT
1 TT
7735063 TTGATGAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 7 0.33
23 14 0.67
ACGTcount: A:0.36, C:0.04, G:0.11, T:0.49
Consensus pattern (23 bp):
TTCTATTGAAAAATATTAGAAGT
Found at i:7735830 original size:19 final size:21
Alignment explanation
Indices: 7735779--7735836 Score: 84
Period size: 21 Copynumber: 2.9 Consensus size: 21
7735769 GGTGGATCAA
*
7735779 CTCTTACGAGCTTTTGTTAAG
1 CTCTTACGAGCTTCTGTTAAG
*
7735800 CTCTTACGAGCTTCTGTTCAG
1 CTCTTACGAGCTTCTGTTAAG
7735821 CT-TT-CGAGCTTCTGTT
1 CTCTTACGAGCTTCTGTT
7735837 GGTGTATTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.34
20 2 0.06
21 21 0.60
ACGTcount: A:0.14, C:0.24, G:0.19, T:0.43
Consensus pattern (21 bp):
CTCTTACGAGCTTCTGTTAAG
Found at i:7737660 original size:24 final size:26
Alignment explanation
Indices: 7737633--7737684 Score: 72
Period size: 24 Copynumber: 2.1 Consensus size: 26
7737623 TTTATTTCAG
*
7737633 TAATAATGTATTTT-TTT-ATACAAT
1 TAATAATATATTTTATTTCATACAAT
*
7737657 TAATAATATATTTTATTTCATATAAT
1 TAATAATATATTTTATTTCATACAAT
7737683 TA
1 TA
7737685 TTGCAATGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 13 0.54
25 3 0.12
26 8 0.33
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.54
Consensus pattern (26 bp):
TAATAATATATTTTATTTCATACAAT
Found at i:7741198 original size:31 final size:31
Alignment explanation
Indices: 7741163--7741225 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
7741153 ACGTAATACT
7741163 TAGTTTCTTGTTCTCAATTATGTGTGATTAA
1 TAGTTTCTTGTTCTCAATTATGTGTGATTAA
* *
7741194 TAGTTTTTTGTTCTCAATTATGTGTGCTTAA
1 TAGTTTCTTGTTCTCAATTATGTGTGATTAA
7741225 T
1 T
7741226 TCTTGGTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.21, C:0.10, G:0.16, T:0.54
Consensus pattern (31 bp):
TAGTTTCTTGTTCTCAATTATGTGTGATTAA
Found at i:7747040 original size:7 final size:7
Alignment explanation
Indices: 7747028--7747053 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
7747018 GAAATTAATA
7747028 TTAAAAT
1 TTAAAAT
7747035 TTAAAAT
1 TTAAAAT
7747042 TTAAAAT
1 TTAAAAT
7747049 TTAAA
1 TTAAA
7747054 TCAAACTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (7 bp):
TTAAAAT
Found at i:7750040 original size:19 final size:19
Alignment explanation
Indices: 7750016--7750056 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
7750006 TATTTCATTT
* *
7750016 TTTAAATATTTCTTAAATA
1 TTTAAATAATTATTAAATA
*
7750035 TTTAAATAATTATTACATA
1 TTTAAATAATTATTAAATA
7750054 TTT
1 TTT
7750057 TAACTTATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (19 bp):
TTTAAATAATTATTAAATA
Found at i:7751170 original size:21 final size:21
Alignment explanation
Indices: 7751146--7751185 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7751136 TATGCTCAGT
* * *
7751146 ATGATCTGTGTTATGATAATC
1 ATGACCTGTATTATAATAATC
7751167 ATGACCTGTATTATAATAA
1 ATGACCTGTATTATAATAA
7751186 GTTTGATCTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.40
Consensus pattern (21 bp):
ATGACCTGTATTATAATAATC
Found at i:7752535 original size:3 final size:3
Alignment explanation
Indices: 7752527--7752568 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
7752517 ATAAATTTCA
*
7752527 TAT TAT TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7752569 AATTGCTTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:7753381 original size:110 final size:110
Alignment explanation
Indices: 7753188--7753591 Score: 661
Period size: 110 Copynumber: 3.7 Consensus size: 110
7753178 CAAAAAAGAA
*
7753188 AAAAAATTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTG
1 AAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTG
7753253 GGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTCTT
66 GGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTCTT
* * *
7753298 AAAAATTTCAAAATAAGGCAATGTTTTGTGTTTGGAAATTCGAGAAAATATGCCCTAAGGTGCTA
1 AAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTG
7753363 GGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTCTT
66 GGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTCTT
*
7753408 AAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTTGAGAAAACATGCCCTAAGGTGCTG
1 AAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTG
* * * *
7753473 GGTGTCGATTTTTCTCATTCAACCAAATAGCTAAATA-CC-CCTT
66 GGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTCTT
* * *
7753516 CAAAAATTTCAAAATAAGGCAATGGTTTGCGTTTGGAAATTCGAG-GAACGTGCCCTAAGGTGCT
1 -AAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCT
*
7753580 GGGTTTCGATTT
65 GGGTGTCGATTT
7753592 CTCGTTTATC
Statistics
Matches: 276, Mismatches: 17, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
108 31 0.11
109 44 0.16
110 201 0.73
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (110 bp):
AAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTG
GGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTCTT
Found at i:7755513 original size:10 final size:10
Alignment explanation
Indices: 7755500--7755574 Score: 84
Period size: 10 Copynumber: 7.5 Consensus size: 10
7755490 AAAAATTAAA
*
7755500 AAAAGATTTT
1 AAAATATTTT
7755510 AAAAGTATTTT
1 AAAA-TATTTT
7755521 AAAAATATTTT
1 -AAAATATTTT
*
7755532 -AAA-A-TTA
1 AAAATATTTT
7755539 AAAATATTTT
1 AAAATATTTT
7755549 AAAAATATTTT
1 -AAAATATTTT
7755560 AAAATATTTT
1 AAAATATTTT
7755570 AAAAT
1 AAAAT
7755575 TAAAAAAATT
Statistics
Matches: 56, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
7 2 0.04
8 4 0.07
9 4 0.07
10 21 0.38
11 21 0.38
12 4 0.07
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.43
Consensus pattern (10 bp):
AAAATATTTT
Found at i:7755519 original size:11 final size:11
Alignment explanation
Indices: 7755499--7755573 Score: 90
Period size: 11 Copynumber: 7.4 Consensus size: 11
7755489 TAAAAATTAA
*
7755499 AAAAAGATTTT
1 AAAAATATTTT
*
7755510 AAAAGTATTTT
1 AAAAATATTTT
7755521 AAAAATATTTT
1 AAAAATATTTT
7755532 --AAA-A--TT
1 AAAAATATTTT
7755538 AAAAATATTTT
1 AAAAATATTTT
7755549 AAAAATATTTT
1 AAAAATATTTT
7755560 -AAAATATTTT
1 AAAAATATTTT
7755570 AAAA
1 AAAA
7755574 TTAAAAAAAT
Statistics
Matches: 55, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
6 2 0.04
8 4 0.07
9 4 0.07
10 10 0.18
11 35 0.64
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:7755548 original size:28 final size:28
Alignment explanation
Indices: 7755508--7755564 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
7755498 AAAAAAGATT
*
7755508 TTAAAAGTATTTTAAAAATATTTTAAAA
1 TTAAAAATATTTTAAAAATATTTTAAAA
7755536 TTAAAAATATTTTAAAAATATTTTAAAA
1 TTAAAAATATTTTAAAAATATTTTAAAA
7755564 T
1 T
7755565 ATTTTAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (28 bp):
TTAAAAATATTTTAAAAATATTTTAAAA
Found at i:7755655 original size:21 final size:20
Alignment explanation
Indices: 7755609--7755655 Score: 85
Period size: 20 Copynumber: 2.3 Consensus size: 20
7755599 TTTATTATAT
7755609 CGGGCCAAAAAAGCGGTGCC
1 CGGGCCAAAAAAGCGGTGCC
7755629 CGGGCCAAAAAAGCGGTGCC
1 CGGGCCAAAAAAGCGGTGCC
7755649 CGAGGCC
1 CG-GGCC
7755656 CGGCCCGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 22 0.85
21 4 0.15
ACGTcount: A:0.28, C:0.32, G:0.36, T:0.04
Consensus pattern (20 bp):
CGGGCCAAAAAAGCGGTGCC
Found at i:7765160 original size:29 final size:28
Alignment explanation
Indices: 7765103--7765159 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
7765093 CCAGCAATAT
7765103 ATTTTACCTATTCCTGTAAAATTTTAAA
1 ATTTTACCTATTCCTGTAAAATTTTAAA
* *
7765131 ATTTTACCTTATTTCTGT-AATTTTTAAA
1 ATTTTACC-TATTCCTGTAAAATTTTAAA
7765159 A
1 A
7765160 AAAAGATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 18 0.69
29 8 0.31
ACGTcount: A:0.33, C:0.12, G:0.04, T:0.51
Consensus pattern (28 bp):
ATTTTACCTATTCCTGTAAAATTTTAAA
Found at i:7766928 original size:20 final size:19
Alignment explanation
Indices: 7766890--7766937 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 19
7766880 TTATGTATAT
*
7766890 TTTAATTAATCATATTTTA
1 TTTAATTAATCATAATTTA
*
7766909 GTTTAATTAATCTTAATTTA
1 -TTTAATTAATCATAATTTA
*
7766929 CTTAATTAA
1 TTTAATTAA
7766938 GCTTGACTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 8 0.32
20 17 0.68
ACGTcount: A:0.38, C:0.06, G:0.02, T:0.54
Consensus pattern (19 bp):
TTTAATTAATCATAATTTA
Found at i:7768829 original size:33 final size:30
Alignment explanation
Indices: 7768770--7768830 Score: 77
Period size: 33 Copynumber: 1.9 Consensus size: 30
7768760 CAATAAATGA
*
7768770 AAAATATATAAAATTATTAAATATTAAATT
1 AAAATATATAAAATTATTAAAAATTAAATT
*
7768800 AAAATAATATAAATATTTTTAAAAAATTAAA
1 AAAAT-ATATAAA-ATTATT-AAAAATTAAA
7768831 AATAATATGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 5 0.19
31 7 0.27
32 5 0.19
33 9 0.35
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (30 bp):
AAAATATATAAAATTATTAAAAATTAAATT
Found at i:7769177 original size:22 final size:22
Alignment explanation
Indices: 7769135--7769177 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
7769125 TTCTATTGTT
*
7769135 TTGCTACCATTTTGTTATTATA
1 TTGCTACCATTTTATTATTATA
* *
7769157 TTGCTACTATTTTATTGTTAT
1 TTGCTACCATTTTATTATTAT
7769178 TATTTGGATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.58
Consensus pattern (22 bp):
TTGCTACCATTTTATTATTATA
Found at i:7769506 original size:13 final size:13
Alignment explanation
Indices: 7769488--7769512 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7769478 CCAGGCCGAC
7769488 CTAAGCCTAAAAA
1 CTAAGCCTAAAAA
7769501 CTAAGCCTAAAA
1 CTAAGCCTAAAA
7769513 TTATGTTGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.24, G:0.08, T:0.16
Consensus pattern (13 bp):
CTAAGCCTAAAAA
Found at i:7779705 original size:113 final size:113
Alignment explanation
Indices: 7779496--7779815 Score: 351
Period size: 113 Copynumber: 2.8 Consensus size: 113
7779486 TATGGGAAAA
* * ** * *
7779496 CGCCGCAAAATATCCTAACCAAAGCGCACCGTTTTGGTCTTG-GTGTATGTTACAGTTAGTGGCG
1 CGCCGCAAAATATCCTAACCAAAACGCA-AGTTTTGGTCTTGAG-GTATACTAGAATTAGTGGCG
* * * **
7779560 CTTAAGGGAAAACGTCGCTAAAGCATAATATTAGCGGC-GTTTTGTGAGAAG
64 C-AAAGGGAAAACGCCGCTAAAGCATACTATTAGCGGCACATTTG-GAGAAG
*
7779611 CGCCGCAAAATATCTTAACCAAAACGCAGAG-TTTGGTCTTGAGGTATACTAGAATTAGTGGCGC
1 CGCCGCAAAATATCCTAACCAAAACGCA-AGTTTTGGTCTTGAGGTATACTAGAATTAGTGGCGC
* *
7779675 AAAGGGAACACGCCGCTAAGGCATACTATTAGCGGCACATTTGGAGAAG
65 AAAGGGAAAACGCCGCTAAAGCATACTATTAGCGGCACATTTGGAGAAG
* * * * *
7779724 CGCCGCAAAGTTTCGTAACCAAAACGCAACGTTTTTGTCTTGATGTATAC-AGTAATTAGTGGCG
1 CGCCGCAAAATATCCTAACCAAAACGCAA-GTTTTGGTCTTGAGGTATACTAG-AATTAGTGGCG
**
7779788 CATACTGGAAAACGCCGCTAAAGCATAC
64 CA-AAGGGAAAACGCCGCTAAAGCATAC
7779816 AAAATATGTT
Statistics
Matches: 175, Mismatches: 24, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
112 1 0.01
113 65 0.37
114 60 0.34
115 49 0.28
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24
Consensus pattern (113 bp):
CGCCGCAAAATATCCTAACCAAAACGCAAGTTTTGGTCTTGAGGTATACTAGAATTAGTGGCGCA
AAGGGAAAACGCCGCTAAAGCATACTATTAGCGGCACATTTGGAGAAG
Found at i:7779855 original size:199 final size:200
Alignment explanation
Indices: 7779616--7779987 Score: 541
Period size: 200 Copynumber: 1.9 Consensus size: 200
7779606 AGAAGCGCCG
7779616 CAAAATATCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATACTAGAATTAGTGGCGC-AAAGG
1 CAAAATATCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATACTAGAATTAGTGGCGCTAAAGG
* * * *
7779680 GA-ACACGCCGCTAAGGCATACTATTAGCGGCACATTTGGAGAAGCGCCGCAAAGTTTCGTAACC
66 GAGA-ACGCCGCTAAAGCATACTATTAGCGGCACATTTGGAGAAGCGCCGCAAAATATAGTAACC
** *
7779744 AAAACGCAACGTTTTTGTCTTGATGTATACAGTAATTAGTGGCGCATACTGGAAAACGCCGCTAA
130 AAAACGCAACGTTTAAGTCTTGATGTATACAGGAATTAGTGGCGCATACTGGAAAACGCCGCTAA
7779809 AGCATA
195 AGCATA
* * * * * *
7779815 CAAAATATGTTCACCAAAACGCAGAGTTTTGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGG
1 CAAAATATCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATACTAGAATTAGTGGCGCTAAAGG
*** * *
7779880 GAGAACGCCGCTAAAGCATACTATTAGCGGCGTGTTTTGAGAAGCGCCGCAAAATATATTAACCA
66 GAGAACGCCGCTAAAGCATACTATTAGCGGCACATTTGGAGAAGCGCCGCAAAATATAGTAACCA
* *
7779945 AAACGCAGCGTTTAAGTCTTGATGTATACTGGAATTAGTGGCG
131 AAACGCAACGTTTAAGTCTTGATGTATACAGGAATTAGTGGCG
7779988 TCCACGAGAA
Statistics
Matches: 151, Mismatches: 20, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
199 55 0.36
200 95 0.63
201 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.26
Consensus pattern (200 bp):
CAAAATATCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATACTAGAATTAGTGGCGCTAAAGG
GAGAACGCCGCTAAAGCATACTATTAGCGGCACATTTGGAGAAGCGCCGCAAAATATAGTAACCA
AAACGCAACGTTTAAGTCTTGATGTATACAGGAATTAGTGGCGCATACTGGAAAACGCCGCTAAA
GCATA
Found at i:7779887 original size:85 final size:86
Alignment explanation
Indices: 7779741--7779900 Score: 229
Period size: 85 Copynumber: 1.9 Consensus size: 86
7779731 AAGTTTCGTA
*
7779741 ACCAAAACGCAACGTTTTTGTCTTGATGTATACAGTAATTAGTGGCGCATACTGGAAAACGCCGC
1 ACCAAAACGCAACGTTTTTGTCTTGAGGTATACAGTAATTAGTGGCGCATACTGGAAAACGCCGC
7779806 TAAAGCATACAAAATATGTTC
66 TAAAGCATACAAAATATGTTC
* * *
7779827 ACCAAAACGCAGA-G-TTTTGTCTTGAGGTATATTAG-AATTAGTGGCGCTTA-TGGGAGAACGC
1 ACCAAAACGCA-ACGTTTTTGTCTTGAGGTATA-CAGTAATTAGTGGCGCATACT-GGAAAACGC
7779888 CGCTAAAGCATAC
63 CGCTAAAGCATAC
7779901 TATTAGCGGC
Statistics
Matches: 67, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
84 1 0.01
85 51 0.76
86 14 0.21
87 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (86 bp):
ACCAAAACGCAACGTTTTTGTCTTGAGGTATACAGTAATTAGTGGCGCATACTGGAAAACGCCGC
TAAAGCATACAAAATATGTTC
Found at i:7780079 original size:115 final size:114
Alignment explanation
Indices: 7779815--7780079 Score: 338
Period size: 115 Copynumber: 2.3 Consensus size: 114
7779805 CTAAAGCATA
* * * * * *
7779815 CAAAATATGTTCACCAAAACGCAGAGTTTTGTCTTGAGGTATATTAGAATTAGTGGCGCTTATGG
1 CAAAATATATTAACCAAAACGCAGAGTTTTGTCTTGAGGTATACTAGAATTAGTGGCGCTCACGA
7779880 GAGAACGCCGCTAAAGCATACTATTAGCGGCGTGTTTTGAGAAGCGCCG
66 GAGAACGCCGCTAAAGCATACTATTAGCGGCGTGTTTTGAGAAGCGCCG
* * * *
7779929 CAAAATATATTAACCAAAACGCAGCGTTTAAGTCTTGATGTATACTGGAATTAGTGGCG-TCCAC
1 CAAAATATATTAACCAAAACGCAGAGTTT-TGTCTTGAGGTATACTAGAATTAGTGGCGCT-CAC
* *
7779993 GAGA-AATCGCCGCTAAGGCATAGTATTAGCGGCGCT-TTTTGAGAAGCGCCG
64 GAGAGAA-CGCCGCTAAAGCATACTATTAGCGGCG-TGTTTTGAGAAGCGCCG
* *
7780044 GAAAATATCTTAACCAAAACGCAGAGTTTTGGTCTT
1 CAAAATATATTAACCAAAACGCAGAGTTTT-GTCTT
7780080 AACCATGCAT
Statistics
Matches: 130, Mismatches: 16, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
114 29 0.22
115 100 0.77
116 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (114 bp):
CAAAATATATTAACCAAAACGCAGAGTTTTGTCTTGAGGTATACTAGAATTAGTGGCGCTCACGA
GAGAACGCCGCTAAAGCATACTATTAGCGGCGTGTTTTGAGAAGCGCCG
Found at i:7780141 original size:7 final size:7
Alignment explanation
Indices: 7780129--7780214 Score: 50
Period size: 7 Copynumber: 12.0 Consensus size: 7
7780119 TTATTGTATT
7780129 TGGTTTA
1 TGGTTTA
7780136 TGGTTTA
1 TGGTTTA
7780143 TGGTTTAA
1 TGGTTT-A
* *
7780151 AGG-TTG
1 TGGTTTA
*
7780157 GGGTTTA
1 TGGTTTA
*
7780164 AGGTTTA
1 TGGTTTA
7780171 GTGG-TTA
1 -TGGTTTA
*
7780178 TGTGTTAA
1 TG-GTTTA
*
7780186 GGGTTTA
1 TGGTTTA
*
7780193 TGATTTTA
1 TG-GTTTA
*
7780201 GGGTTTA
1 TGGTTTA
7780208 TGGTTTA
1 TGGTTTA
7780215 CAGTTTAGAT
Statistics
Matches: 59, Mismatches: 14, Indels: 12
0.69 0.16 0.14
Matches are distributed among these distances:
6 4 0.07
7 42 0.71
8 13 0.22
ACGTcount: A:0.19, C:0.00, G:0.33, T:0.49
Consensus pattern (7 bp):
TGGTTTA
Found at i:7782573 original size:12 final size:12
Alignment explanation
Indices: 7782556--7782592 Score: 65
Period size: 12 Copynumber: 3.0 Consensus size: 12
7782546 GATCTTGTGT
7782556 GTTTGTTTTCTA
1 GTTTGTTTTCTA
7782568 GTTTGTTTTCTA
1 GTTTGTTTTCTA
7782580 GTTTGTTCTTCTA
1 GTTTGTT-TTCTA
7782593 ATTTTTGAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 19 0.79
13 5 0.21
ACGTcount: A:0.08, C:0.11, G:0.16, T:0.65
Consensus pattern (12 bp):
GTTTGTTTTCTA
Found at i:7782866 original size:12 final size:12
Alignment explanation
Indices: 7782849--7782875 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
7782839 TTTTACTTCA
7782849 TTTAACAGAATG
1 TTTAACAGAATG
7782861 TTTAACAGAATG
1 TTTAACAGAATG
7782873 TTT
1 TTT
7782876 TACTTCATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.41
Consensus pattern (12 bp):
TTTAACAGAATG
Found at i:7785359 original size:21 final size:20
Alignment explanation
Indices: 7785333--7785384 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
7785323 CGACAACTTA
*
7785333 AAGCAGAGGTGGCAGCGAGGG
1 AAGCAGAGGT-GCAGCGAGAG
7785354 AAGCAGAGGCTGCAGCGAGAG
1 AAGCAGAGG-TGCAGCGAGAG
*
7785375 AAGTAGAGGT
1 AAGCAGAGGT
7785385 TCAAAAGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 1 0.04
21 26 0.93
22 1 0.04
ACGTcount: A:0.33, C:0.13, G:0.46, T:0.08
Consensus pattern (20 bp):
AAGCAGAGGTGCAGCGAGAG
Found at i:7785864 original size:42 final size:42
Alignment explanation
Indices: 7785817--7785924 Score: 139
Period size: 42 Copynumber: 2.6 Consensus size: 42
7785807 AAAGCGCCGT
*
7785817 TAAAGAACATGTTCTTTCGCGGTGCTTA-ATAAAAAACGCCAC
1 TAAAGAACATGTTCTTTCGCGGCGCTTAGA-AAAAAACGCCAC
* *
7785859 TAAAGATCATGTTC-TTCAGCGGCGCTTAGAAAAAAACGCCGC
1 TAAAGAACATGTTCTTTC-GCGGCGCTTAGAAAAAAACGCCAC
* *
7785901 TAAAGACCATGTTCTTTAGCGGCG
1 TAAAGAACATGTTCTTTCGCGGCG
7785925 TTTTTGTTTG
Statistics
Matches: 58, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
41 3 0.05
42 52 0.90
43 3 0.05
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.25
Consensus pattern (42 bp):
TAAAGAACATGTTCTTTCGCGGCGCTTAGAAAAAAACGCCAC
Found at i:7786085 original size:22 final size:22
Alignment explanation
Indices: 7786057--7786100 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
7786047 GATCTATGTT
*
7786057 AATCCATAAATACCTTACCTAC
1 AATCCATAAACACCTTACCTAC
*
7786079 AATCCATAAACACTTTACCTAC
1 AATCCATAAACACCTTACCTAC
7786101 GTGATACATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.41, C:0.32, G:0.00, T:0.27
Consensus pattern (22 bp):
AATCCATAAACACCTTACCTAC
Found at i:7788733 original size:21 final size:21
Alignment explanation
Indices: 7788709--7788749 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
7788699 AGCATATTAC
*
7788709 TTTCATATGGCATACACCATA
1 TTTCATATGGCACACACCATA
7788730 TTTCATATGGCACACACCAT
1 TTTCATATGGCACACACCAT
7788750 GAATGATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.27, G:0.10, T:0.32
Consensus pattern (21 bp):
TTTCATATGGCACACACCATA
Found at i:7789317 original size:5 final size:5
Alignment explanation
Indices: 7789309--7789335 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
7789299 ACATAAGAAA
7789309 AATAT AATAT AATAT AATAT AATAT AA
1 AATAT AATAT AATAT AATAT AATAT AA
7789336 ATATCAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (5 bp):
AATAT
Found at i:7794780 original size:15 final size:13
Alignment explanation
Indices: 7794747--7794771 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7794737 CCCCCCAAAC
7794747 ACAGATACAAAAT
1 ACAGATACAAAAT
7794760 ACAGATACAAAA
1 ACAGATACAAAA
7794772 ATAACAGATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.08, T:0.12
Consensus pattern (13 bp):
ACAGATACAAAAT
Found at i:7804843 original size:23 final size:22
Alignment explanation
Indices: 7804812--7804855 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
7804802 GATTAACTCG
*
7804812 TTAATTATTTTTATATATTTTAA
1 TTAAATATTTTTATAT-TTTTAA
*
7804835 TTAAATATTTTTTTATTTTTA
1 TTAAATATTTTTATATTTTTA
7804856 TAAGATTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (22 bp):
TTAAATATTTTTATATTTTTAA
Found at i:7808269 original size:2 final size:2
Alignment explanation
Indices: 7808264--7808290 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7808254 ATATATATAT
7808264 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
7808291 ATATGGAAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7810345 original size:38 final size:38
Alignment explanation
Indices: 7810267--7810363 Score: 117
Period size: 38 Copynumber: 2.6 Consensus size: 38
7810257 TTAAAAATTA
* *
7810267 TTTTAATAAAATAAAATATTTATTATATTTATTTGTGT
1 TTTTAATAAAATAAAACATTTATTATATTTATTGGTGT
*
7810305 TTTTAATACAATAAAACATTTATTATATTTA-TGGTAGT
1 TTTTAATAAAATAAAACATTTATTATATTTATTGGT-GT
* *
7810343 TTTT-TTAATATAAATACATTT
1 TTTTAATAAAATAAA-ACATTT
7810364 TAATGTATTT
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
37 10 0.20
38 41 0.80
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.53
Consensus pattern (38 bp):
TTTTAATAAAATAAAACATTTATTATATTTATTGGTGT
Found at i:7812470 original size:22 final size:23
Alignment explanation
Indices: 7812428--7812471 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
7812418 TCATGATTGA
* *
7812428 AGATTCTCATTTGATTTCTTTGG
1 AGATTATCATGTGATTTCTTTGG
7812451 AGATTATCATGTG-TTTCTTTG
1 AGATTATCATGTGATTTCTTTG
7812472 TTTCTTGTGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.18, C:0.11, G:0.18, T:0.52
Consensus pattern (23 bp):
AGATTATCATGTGATTTCTTTGG
Found at i:7820990 original size:24 final size:22
Alignment explanation
Indices: 7820845--7821081 Score: 80
Period size: 24 Copynumber: 10.4 Consensus size: 22
7820835 TAATTTACAA
*
7820845 TAAATAATAT--ATAATAAATT
1 TAAATAATATACATGATAAATT
7820865 TGAAATAATAATACAT-ATAAAATT
1 T-AAATAAT-ATACATGAT-AAATT
* **
7820889 TAAA-AATTTTGATGAT-AATT
1 TAAATAATATACATGATAAATT
* *
7820909 CTAGAATAATCATACGTGATAAATCC
1 -TA-AATAAT-ATACATGATAAAT-T
* * * * *
7820935 AAAAGAACAGTATATAATAAATT
1 TAAATAATA-TACATGATAAATT
7820958 TAAA-AATATTA-ATGATAAATT
1 TAAATAATA-TACATGATAAATT
7820979 TGAAATAGATATACATGATAAATT
1 T-AAATA-ATATACATGATAAATT
* *
7821003 TAAAATAATGTTACA--ATGAATT
1 T-AAATAAT-ATACATGATAAATT
*
7821025 TAAAATAATAATA-TTGATAAATT
1 T-AAATAAT-ATACATGATAAATT
* * *
7821048 ACAAATAATAAAACGTGATAAATCT
1 -TAAATAAT-ATACATGATAAAT-T
*
7821073 AAAATAATA
1 TAAATAATA
7821082 ATATACAATA
Statistics
Matches: 164, Mismatches: 30, Indels: 43
0.69 0.13 0.18
Matches are distributed among these distances:
20 5 0.03
21 22 0.13
22 34 0.21
23 34 0.21
24 64 0.39
25 5 0.03
ACGTcount: A:0.54, C:0.05, G:0.07, T:0.33
Consensus pattern (22 bp):
TAAATAATATACATGATAAATT
Found at i:7821043 original size:69 final size:67
Alignment explanation
Indices: 7820954--7821080 Score: 157
Period size: 69 Copynumber: 1.9 Consensus size: 67
7820944 GTATATAATA
* ** * *
7820954 AATTTAAAAATATTAATGATAAATTTGAAATAGAT-ATACATGATAAATTTAAAATAATGTTACA
1 AATTTAAAAATAATAATGATAAATTACAAATA-ATAAAACATGATAAATCTAAAATAATGTTACA
7821018 ATG
65 ATG
* *
7821021 AATTTAAAATAATAATATTGATAAATTACAAATAATAAAACGTGATAAATCTAAAATAAT
1 AATTT-AAA-AATAATAATGATAAATTACAAATAATAAAACATGATAAATCTAAAATAAT
7821081 AATATACAAT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
67 5 0.10
68 5 0.10
69 40 0.80
ACGTcount: A:0.55, C:0.04, G:0.07, T:0.34
Consensus pattern (67 bp):
AATTTAAAAATAATAATGATAAATTACAAATAATAAAACATGATAAATCTAAAATAATGTTACAA
TG
Found at i:7821092 original size:24 final size:24
Alignment explanation
Indices: 7820982--7821093 Score: 74
Period size: 24 Copynumber: 4.7 Consensus size: 24
7820972 ATAAATTTGA
7820982 AATAGATATACATGATAAATTTAAAAT
1 AATA-ATATACA--ATAAATTTAAAAT
* *
7821009 AAT-GT-TACAATGAATTTAAAAT
1 AATAATATACAATAAATTTAAAAT
**
7821031 AATAATAT-TGATAAA-TTACAAAT
1 AATAATATACAATAAATTTA-AAAT
* *
7821054 AATAA-A-ACGTGATAAATCTAAAAT
1 AATAATATAC--AATAAATTTAAAAT
7821078 AATAATATACAATAAA
1 AATAATATACAATAAA
7821094 ATAACTTAGA
Statistics
Matches: 67, Mismatches: 9, Indels: 21
0.69 0.09 0.22
Matches are distributed among these distances:
22 19 0.28
23 14 0.21
24 25 0.37
25 4 0.06
26 2 0.03
27 3 0.04
ACGTcount: A:0.57, C:0.05, G:0.06, T:0.31
Consensus pattern (24 bp):
AATAATATACAATAAATTTAAAAT
Found at i:7830536 original size:19 final size:21
Alignment explanation
Indices: 7830509--7830563 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 21
7830499 ATTTATCCCT
*
7830509 AAACTTTTATAAAATATT-A-
1 AAACATTTATAAAATATTAAC
7830528 AAACATTTA-AAAAT-TTAAC
1 AAACATTTATAAAATATTAAC
*
7830547 AAATATTTAT-AAATATT
1 AAACATTTATAAAATATT
7830564 TATATTTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
17 2 0.07
18 6 0.20
19 20 0.67
20 2 0.07
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (21 bp):
AAACATTTATAAAATATTAAC
Found at i:7833045 original size:15 final size:16
Alignment explanation
Indices: 7833025--7833060 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
7833015 AATTGGTTCT
7833025 TTTTTTGAG-ATTTTA
1 TTTTTTGAGTATTTTA
*
7833040 TTTTTTGGGTATTTTA
1 TTTTTTGAGTATTTTA
7833056 TTTTT
1 TTTTT
7833061 CCTTTTTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.72
Consensus pattern (16 bp):
TTTTTTGAGTATTTTA
Found at i:7833045 original size:16 final size:17
Alignment explanation
Indices: 7833024--7833060 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
7833014 TAATTGGTTC
7833024 TTTTTTTGAG-ATTTTA
1 TTTTTTTGAGTATTTTA
*
7833040 -TTTTTTGGGTATTTTA
1 TTTTTTTGAGTATTTTA
7833056 TTTTT
1 TTTTT
7833061 CCTTTTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 8 0.44
16 6 0.33
17 4 0.22
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.73
Consensus pattern (17 bp):
TTTTTTTGAGTATTTTA
Found at i:7843243 original size:35 final size:35
Alignment explanation
Indices: 7843197--7843268 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
7843187 ACAAACTTGG
**
7843197 GATAAGCTCAAGCAGGTTTTCTAGGGATCACAGAA
1 GATAAGCTCAAGCAGGAGTTCTAGGGATCACAGAA
7843232 GATAAGCTCAAGCAGGAGTTCTAGGGATCACAGAA
1 GATAAGCTCAAGCAGGAGTTCTAGGGATCACAGAA
7843267 GA
1 GA
7843269 AAGATGATAG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.19
Consensus pattern (35 bp):
GATAAGCTCAAGCAGGAGTTCTAGGGATCACAGAA
Found at i:7844629 original size:44 final size:44
Alignment explanation
Indices: 7844549--7844632 Score: 125
Period size: 44 Copynumber: 1.9 Consensus size: 44
7844539 CATCCATGTT
* *
7844549 AACTGCGAACTGTGAGCTCACCAGAAGATGCAAGCTCACCTATG
1 AACTACGAACTGTGAGCTCACCAAAAGATGCAAGCTCACCTATG
*
7844593 AACTACGAACTGTGAGCTCACCAAAATG-TGCGAGCTCACC
1 AACTACGAACTGTGAGCTCACCAAAA-GATGCAAGCTCACC
7844633 AACATTGTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
44 35 0.97
45 1 0.03
ACGTcount: A:0.32, C:0.29, G:0.21, T:0.18
Consensus pattern (44 bp):
AACTACGAACTGTGAGCTCACCAAAAGATGCAAGCTCACCTATG
Found at i:7844646 original size:17 final size:17
Alignment explanation
Indices: 7844603--7844666 Score: 76
Period size: 17 Copynumber: 3.7 Consensus size: 17
7844593 AACTACGAAC
*
7844603 TGTGAGCTCACCAAAAT
1 TGTGAGCTCACCAACAT
*
7844620 GTGCGAGCTCACCAACAT
1 -TGTGAGCTCACCAACAT
7844638 TGTGAGCTCACCAAGCA-
1 TGTGAGCTCACCAA-CAT
*
7844655 TGAGAGCTCACC
1 TGTGAGCTCACC
7844667 TGCAAGCTCT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
17 24 0.59
18 17 0.41
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.19
Consensus pattern (17 bp):
TGTGAGCTCACCAACAT
Found at i:7848385 original size:104 final size:104
Alignment explanation
Indices: 7848250--7848617 Score: 591
Period size: 104 Copynumber: 3.6 Consensus size: 104
7848240 TTGTACATAA
** *
7848250 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCTT
7848315 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
7848354 AGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
7848418 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
7848458 AGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* ** *
7848522 CTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATT-CCCCA
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* * *
7848560 AGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
7848618 AATAACGGTT
Statistics
Matches: 252, Mismatches: 10, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
102 57 0.23
103 26 0.10
104 169 0.67
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:7848570 original size:26 final size:26
Alignment explanation
Indices: 7848535--7848584 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
7848525 AAATAAAAAG
*
7848535 GGGGTTGCTATGTGCTGATTCCCCAA
1 GGGGTTGCTAAGTGCTGATTCCCCAA
7848561 GGGGTTGCTAAGTGCTGATTCCCC
1 GGGGTTGCTAAGTGCTGATTCCCC
7848585 GATTAAGTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.14, C:0.24, G:0.32, T:0.30
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCAA
Found at i:7855991 original size:103 final size:104
Alignment explanation
Indices: 7855811--7856177 Score: 598
Period size: 103 Copynumber: 3.6 Consensus size: 104
7855801 TTGTACATAA
** *
7855811 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCTT
7855876 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
7855915 AGGGGTTGCTAAGTGCTGATTCCCCG-TTCATTGGTGGTGCTATGTGCGATATCCACCGTATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCTT
7855979 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
7856018 AGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* * * *
7856082 CTGAAA--TAAAAAGGGGTTGCTATGTGCTGATTCCCCCA
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* * *
7856120 AGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
7856178 AATAACGGTT
Statistics
Matches: 250, Mismatches: 10, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
102 82 0.33
103 103 0.41
104 65 0.26
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:7856122 original size:27 final size:27
Alignment explanation
Indices: 7856092--7856144 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
7856082 CTGAAATAAA
*
7856092 AAGGGGTTGCTATGTGCTGATTCCCCC
1 AAGGGGTTGCTAAGTGCTGATTCCCCC
7856119 AAGGGGTTGCTAAGTGCTGATTCCCC
1 AAGGGGTTGCTAAGTGCTGATTCCCC
7856145 GATTAAGTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.17, C:0.25, G:0.30, T:0.28
Consensus pattern (27 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCC
Found at i:7865677 original size:12 final size:12
Alignment explanation
Indices: 7865660--7865685 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7865650 AAAGAACACA
7865660 TAATTTCAGATT
1 TAATTTCAGATT
7865672 TAATTTCAGATT
1 TAATTTCAGATT
7865684 TA
1 TA
7865686 TTACATAGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.08, T:0.50
Consensus pattern (12 bp):
TAATTTCAGATT
Found at i:7866255 original size:33 final size:32
Alignment explanation
Indices: 7866186--7866255 Score: 77
Period size: 33 Copynumber: 2.2 Consensus size: 32
7866176 GTTTTGGGTC
* * * *
7866186 CACACGGCCCAAATAGCCCAGCCCGTGTGGCC
1 CACACAGCCCAAATAGCCCAGACCATGTGGCA
* *
7866218 CACACAGCCCAAAATAGCCTAGACCATGTGTCA
1 CACACAGCCC-AAATAGCCCAGACCATGTGGCA
7866251 CACAC
1 CACAC
7866256 GGTCCAGCAC
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
32 9 0.29
33 22 0.71
ACGTcount: A:0.30, C:0.40, G:0.19, T:0.11
Consensus pattern (32 bp):
CACACAGCCCAAATAGCCCAGACCATGTGGCA
Found at i:7879467 original size:36 final size:36
Alignment explanation
Indices: 7879415--7879498 Score: 96
Period size: 36 Copynumber: 2.3 Consensus size: 36
7879405 ATATATAATT
* * * * *
7879415 ATCACTTTTAAATATTACAACTATATCATTATGCCGA
1 ATCACTTAT-AATATTACAAATACATCAATAGGCCGA
*
7879452 ATCACTTATAATATTACAAATACATCAATAGGCTGA
1 ATCACTTATAATATTACAAATACATCAATAGGCCGA
*
7879488 ATCATTTATAA
1 ATCACTTATAA
7879499 GTTCAATTGT
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
36 32 0.80
37 8 0.20
ACGTcount: A:0.42, C:0.17, G:0.06, T:0.36
Consensus pattern (36 bp):
ATCACTTATAATATTACAAATACATCAATAGGCCGA
Done.