Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60343961
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 596159 characters in sequence are not A, C, G, or T
File 28 of 204
Found at i:7887985 original size:19 final size:20
Alignment explanation
Indices: 7887958--7887998 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
7887948 ATGCAAGCAG
7887958 AAATAAAAATAGA-AATAAA
1 AAATAAAAATAGACAATAAA
* *
7887977 AAATGAAAATTGACAATAAA
1 AAATAAAAATAGACAATAAA
7887997 AA
1 AA
7887999 CAAGCAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.73, C:0.02, G:0.07, T:0.17
Consensus pattern (20 bp):
AAATAAAAATAGACAATAAA
Found at i:7888842 original size:138 final size:138
Alignment explanation
Indices: 7888592--7888844 Score: 391
Period size: 138 Copynumber: 1.8 Consensus size: 138
7888582 AAAAAGAATT
* * *
7888592 ATTTCCATGTCTTTTATATTTTGACTTAAATCAATTAATATAATTGTTTATATTAATAAATTCGG
1 ATTTCCATGTCTTTTATATTTTGACTAAAATCAATTAATATAACTATTTATATTAATAAATTCGG
* * * * *
7888657 TGATATATATACAATTAATATTTTGTATGAATCAAATTTATATATTAATTATATTCTTTCTAAAA
66 TAAAATATATACAATTAATATTTTGCATGAATCAAATTCATAAATTAATTATATTCTTTCTAAAA
7888722 TAATATTA
131 TAATATTA
* *
7888730 ATTTCCATGTCTTTTATATTTTGA-TCAAAATTAATTAATATAACTATTTTTATTAATAAATTCG
1 ATTTCCATGTCTTTTATATTTTGACT-AAAATCAATTAATATAACTATTTATATTAATAAATTCG
*
7888794 GTAAAATATATAGAATTAATATTTTGCATGAATCAAATTCATAAATTAATT
65 GTAAAATATATACAATTAATATTTTGCATGAATCAAATTCATAAATTAATT
7888845 TTATCTATGT
Statistics
Matches: 103, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
137 1 0.01
138 102 0.99
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.47
Consensus pattern (138 bp):
ATTTCCATGTCTTTTATATTTTGACTAAAATCAATTAATATAACTATTTATATTAATAAATTCGG
TAAAATATATACAATTAATATTTTGCATGAATCAAATTCATAAATTAATTATATTCTTTCTAAAA
TAATATTA
Found at i:7905152 original size:15 final size:15
Alignment explanation
Indices: 7905132--7905175 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 15
7905122 CCATAATAGT
7905132 CACATATCATATAAA
1 CACATATCATATAAA
*
7905147 CACATATCATAATACA
1 CACATATCAT-ATAAA
7905163 CACATATTCATAT
1 CACATA-TCATAT
7905176 TTTAAGATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 10 0.38
16 12 0.46
17 4 0.15
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.30
Consensus pattern (15 bp):
CACATATCATATAAA
Found at i:7905167 original size:16 final size:16
Alignment explanation
Indices: 7905132--7905174 Score: 61
Period size: 15 Copynumber: 2.7 Consensus size: 16
7905122 CCATAATAGT
7905132 CACATATCAT-ATAAA
1 CACATATCATAATAAA
*
7905147 CACATATCATAATACA
1 CACATATCATAATAAA
7905163 CACATATTCATA
1 CACATA-TCATA
7905175 TTTTAAGATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 10 0.40
16 10 0.40
17 5 0.20
ACGTcount: A:0.49, C:0.23, G:0.00, T:0.28
Consensus pattern (16 bp):
CACATATCATAATAAA
Found at i:7906860 original size:15 final size:15
Alignment explanation
Indices: 7906840--7906868 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7906830 GAATCGAGTT
7906840 GAGTCAAAAAATTTC
1 GAGTCAAAAAATTTC
7906855 GAGTCAAAAAATTT
1 GAGTCAAAAAATTT
7906869 GAATTTTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.10, G:0.14, T:0.28
Consensus pattern (15 bp):
GAGTCAAAAAATTTC
Found at i:7914950 original size:16 final size:18
Alignment explanation
Indices: 7914918--7914957 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
7914908 CAGGTATGGT
*
7914918 GAGCTCACTATTTTTGTA
1 GAGCTCACTAGTTTTGTA
7914936 -AGCTCAC-AGTTTTGTA
1 GAGCTCACTAGTTTTGTA
7914952 GAGCTC
1 GAGCTC
7914958 GCACATTTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.38
Consensus pattern (18 bp):
GAGCTCACTAGTTTTGTA
Found at i:7918299 original size:20 final size:20
Alignment explanation
Indices: 7918274--7918323 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
7918264 TGGCTTAAAA
7918274 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
7918294 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
7918311 GTGGTAGTGGATT
1 TTGGTAGTGGATT
7918324 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:7922937 original size:20 final size:20
Alignment explanation
Indices: 7922912--7922961 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
7922902 TGGCTTAAAA
7922912 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
7922932 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
7922949 GTGGTAGTGGATT
1 TTGGTAGTGGATT
7922962 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:7925210 original size:29 final size:29
Alignment explanation
Indices: 7925168--7925225 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
7925158 AACAGATAAT
*
7925168 AATATGTGGCATCCTAA-TCAACTTTCCAA
1 AATATGTGACATCC-AAGTCAACTTTCCAA
*
7925197 AATATGTGACATCCAAGTTAACTTTCCAA
1 AATATGTGACATCCAAGTCAACTTTCCAA
7925226 TTGGGTTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 2 0.08
29 24 0.92
ACGTcount: A:0.36, C:0.22, G:0.10, T:0.31
Consensus pattern (29 bp):
AATATGTGACATCCAAGTCAACTTTCCAA
Found at i:7925803 original size:17 final size:16
Alignment explanation
Indices: 7925753--7925804 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 16
7925743 GTTCTCTTAA
7925753 TTTGAGTTTGAGTAAT
1 TTTGAGTTTGAGTAAT
* *
7925769 TTTAAGTTTGAATAAAT
1 TTTGAGTTTGAGT-AAT
*
7925786 TTTGAGTTCGTAGTAAT
1 TTTGAGTTTG-AGTAAT
7925803 TT
1 TT
7925805 AAATTTAAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
16 11 0.38
17 16 0.55
18 2 0.07
ACGTcount: A:0.29, C:0.02, G:0.19, T:0.50
Consensus pattern (16 bp):
TTTGAGTTTGAGTAAT
Found at i:7944888 original size:19 final size:19
Alignment explanation
Indices: 7944864--7944904 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
7944854 TATTTTAAAG
7944864 TTATTTAGGTAGATAAATC
1 TTATTTAGGTAGATAAATC
7944883 TTATTTAGGTAGATAAATC
1 TTATTTAGGTAGATAAATC
7944902 TTA
1 TTA
7944905 GAATAAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.37, C:0.05, G:0.15, T:0.44
Consensus pattern (19 bp):
TTATTTAGGTAGATAAATC
Found at i:7944987 original size:41 final size:41
Alignment explanation
Indices: 7944942--7945023 Score: 128
Period size: 41 Copynumber: 2.0 Consensus size: 41
7944932 ATATTTTATT
* **
7944942 TTATCTTTTTGTAATTTATTAGAATAAGGGAATTATTTTCC
1 TTATCTTTTAGTAATTTATTAGAATAAGAAAATTATTTTCC
*
7944983 TTATCTTTTAGTAGTTTATTAGAATAAGAAAATTATTTTCC
1 TTATCTTTTAGTAATTTATTAGAATAAGAAAATTATTTTCC
7945024 CAAATAGGTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.32, C:0.07, G:0.11, T:0.50
Consensus pattern (41 bp):
TTATCTTTTAGTAATTTATTAGAATAAGAAAATTATTTTCC
Found at i:7950835 original size:178 final size:174
Alignment explanation
Indices: 7950533--7950893 Score: 510
Period size: 178 Copynumber: 2.0 Consensus size: 174
7950523 GTATTCAGAT
7950533 ATTAGACGAAGCTCAATCAAAAGCAATATGAATAAAAAGACCACTTTATAAGCCAAAACATCTGA
1 ATTAGACGAAGCTCAATCAAAAGCAATATGAATAAAAAGACCACTTTATAAGCCAAAACA-CTGA
* *
7950598 CATTTAATACAAAGGAAATGAAAGAAGGCATATCAGCAGCATTAAAAAGGAAAGAGATAAGAAGC
65 CATTTAATACAAAAGAAATGAAAGAAGGCATACCAGCAGCATTAAAAAGGAAAGAGATAAGAAGC
* *
7950663 GAACACAACTG-CCTAATATCAAGGGAAACAAATAAAAAGGAGAA
130 AAACACAACTGACCTAATACCAAGGGAAACAAATAAAAAGGAGAA
* * *
7950707 ATTAGATGAAGCTCAGTCAAAAGCAATATGAATAAAATAATGAAGACCATTTTATAAGCCAAAAC
1 ATTAGACGAAGCTCAATCAAAAGCAATATGAAT---A-AA--AAGACCACTTTATAAGCCAAAAC
*
7950772 A-TGACATTTAATACAAAAGAAATGAAAGAAGGCATACCAGTAGCATTAAAAAGGAAAGAGATAA
60 ACTGACATTTAATACAAAAGAAATGAAAGAAGGCATACCAGCAGCATTAAAAAGGAAAGAGATAA
*
7950836 GAGGCAAACACAACTGTCAACTACCTAATACCAAGGGAAACAAATAAAAAGGAGAA
125 GAAGCAAACACAACTG------ACCTAATACCAAGGGAAACAAATAAAAAGGAGAA
7950892 AT
1 AT
7950894 CTAGTACACA
Statistics
Matches: 165, Mismatches: 9, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
174 31 0.19
177 1 0.01
178 76 0.46
180 23 0.14
185 34 0.21
ACGTcount: A:0.52, C:0.14, G:0.17, T:0.17
Consensus pattern (174 bp):
ATTAGACGAAGCTCAATCAAAAGCAATATGAATAAAAAGACCACTTTATAAGCCAAAACACTGAC
ATTTAATACAAAAGAAATGAAAGAAGGCATACCAGCAGCATTAAAAAGGAAAGAGATAAGAAGCA
AACACAACTGACCTAATACCAAGGGAAACAAATAAAAAGGAGAA
Found at i:7962836 original size:15 final size:17
Alignment explanation
Indices: 7962808--7962843 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
7962798 TCTTTCTGTT
7962808 TTTTCTACTCTTT-CAA
1 TTTTCTACTCTTTCCAA
7962824 TTTTCTA-TCTTTCCAA
1 TTTTCTACTCTTTCCAA
7962840 TTTT
1 TTTT
7962844 GTGTCCATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.17, C:0.22, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTTCTACTCTTTCCAA
Found at i:7965373 original size:46 final size:46
Alignment explanation
Indices: 7965306--7965403 Score: 189
Period size: 46 Copynumber: 2.2 Consensus size: 46
7965296 TTGTACCTAT
7965306 TTGTATGGGTTGATATAATATCTATCACAAATGAATATTGATAGTG
1 TTGTATGGGTTGATATAATATCTATCACAAATGAATATTGATAGTG
7965352 TTGTATGGGTTGATATAATATCTATCACAAATGAATATTGATAGTG
1 TTGTATGGGTTGATATAATATCTATCACAAATGAATATTGATAGTG
7965398 -TGTATG
1 TTGTATG
7965404 AACCTTTCTT
Statistics
Matches: 52, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
45 6 0.12
46 46 0.88
ACGTcount: A:0.34, C:0.06, G:0.20, T:0.40
Consensus pattern (46 bp):
TTGTATGGGTTGATATAATATCTATCACAAATGAATATTGATAGTG
Found at i:7966366 original size:191 final size:193
Alignment explanation
Indices: 7965944--7966465 Score: 764
Period size: 191 Copynumber: 2.7 Consensus size: 193
7965934 ATTTGAGGGA
* *
7965944 TTTAAGGAAAAAAATCAAATAAAATAAGGTTTAGGGTTACTTGAGTAAATTAATTATAAATTTTA
1 TTTAAGG-AAAAAATCAAATAAATTAAGGTTTGGGGTTACTTGAGTAAATTAATTATAAA-TTT-
*
7966009 AAAAAAATAGATTAGGGTTTAGTGTTTAGAGTTTTTAAGAAAAAAAATCAAATAAATTAGGGTTT
63 AAAAAAATAGATTAGGGTTTAGTGTTTAGGGTTTTTAAG-AAAAAAATCAAATAAATTAGGGTTT
* * * * *
7966074 AGGATTATTTGAGTAAATTAATTATAAATTTTTTTAAAAAAATTAGATTAAGGTTTAGTGTTTGG
127 GGGGTTACTTGAGTAAATTAATTATAAA--TTTTTAAAAAAATTAGATGAAGGTTTAGTGTTTAG
7966139 GGTT
190 GGTT
* *
7966143 TTTAAGAAAAAAATTAAATAAATTAAGGTTTGGGGTTACTTGAGTAAATTAATTATAAA-TTAAA
1 TTTAAGGAAAAAATCAAATAAATTAAGGTTTGGGGTTACTTGAGTAAATTAATTATAAATTTAAA
*
7966207 AAAATAGATTAGGGTTTGGTGTTTAGGGTTTTTAAGAAAAAAATCAAATAAATTAGGGTTTGGGG
66 AAAATAGATTAGGGTTTAGTGTTTAGGGTTTTTAAGAAAAAAATCAAATAAATTAGGGTTTGGGG
* *
7966272 TTACTTGAGTAAATTAATTGTAAA-TTTTAAAAAAATTAGATGAGGGTTTAGTGTTTAGGGTT
131 TTACTTGAGTAAATTAATTATAAATTTTTAAAAAAATTAGATGAAGGTTTAGTGTTTAGGGTT
* ** *
7966334 TTTAAGGAAAAAATCAAATACATTTGGGTTTGGGTTTACTTGAGTAAATTAATTATAAATTTTAA
1 TTTAAGGAAAAAATCAAATAAATTAAGGTTTGGGGTTACTTGAGTAAATTAATTATAAA-TTTAA
* * *
7966399 AAAAATTAGATTAGAGTTTAGTGTTTAAGG-TTTTAAG-GAAAAATCAAATAAATTAGGGTTTGG
65 AAAAA-TAGATTAGGGTTTAGTGTTTAGGGTTTTTAAGAAAAAAATCAAATAAATTAGGGTTTGG
7966462 GGTT
129 GGTT
7966466 CAGAGTTACT
Statistics
Matches: 297, Mismatches: 23, Indels: 13
0.89 0.07 0.04
Matches are distributed among these distances:
191 88 0.30
192 29 0.10
193 16 0.05
194 70 0.24
195 37 0.12
196 2 0.01
198 49 0.16
199 6 0.02
ACGTcount: A:0.41, C:0.02, G:0.19, T:0.38
Consensus pattern (193 bp):
TTTAAGGAAAAAATCAAATAAATTAAGGTTTGGGGTTACTTGAGTAAATTAATTATAAATTTAAA
AAAATAGATTAGGGTTTAGTGTTTAGGGTTTTTAAGAAAAAAATCAAATAAATTAGGGTTTGGGG
TTACTTGAGTAAATTAATTATAAATTTTTAAAAAAATTAGATGAAGGTTTAGTGTTTAGGGTT
Found at i:7966482 original size:97 final size:97
Alignment explanation
Indices: 7965944--7966465 Score: 766
Period size: 97 Copynumber: 5.4 Consensus size: 97
7965934 ATTTGAGGGA
* * *
7965944 TTTAAGGAAAAAAATCAAATAAAATAAGGTTTAGGGTTACTTGAGTAAATTAATTATAAATTTTA
1 TTTAA-GAAAAAAATCAAATAAATTAGGGTTTGGGGTTACTTGAGTAAATTAATTATAAATTTTA
* *
7966009 AAAAAAATAGATTAGGGTTTAGTGTTTAGAGTT
65 AAAAAATTAGATTAGGGTTTAGTGTTTAGGGTT
* * *
7966042 TTTAAGAAAAAAAATCAAATAAATTAGGGTTTAGGATTATTTGAGTAAATTAATTATAAATTTTT
1 TTTAAG-AAAAAAATCAAATAAATTAGGGTTTGGGGTTACTTGAGTAAATTAATTATAAA---TT
* *
7966107 TTAAAAAAATTAGATTAAGGTTTAGTGTTTGGGGTT
62 TTAAAAAAATTAGATTAGGGTTTAGTGTTTAGGGTT
* *
7966143 TTTAAGAAAAAAATTAAATAAATTAAGGTTTGGGGTTACTTGAGTAAATTAATTATAAA--TTAA
1 TTTAAGAAAAAAATCAAATAAATTAGGGTTTGGGGTTACTTGAGTAAATTAATTATAAATTTTAA
*
7966206 AAAAA-TAGATTAGGGTTTGGTGTTTAGGGTT
66 AAAAATTAGATTAGGGTTTAGTGTTTAGGGTT
*
7966237 TTTAAGAAAAAAATCAAATAAATTAGGGTTTGGGGTTACTTGAGTAAATTAATTGTAAATTTTAA
1 TTTAAGAAAAAAATCAAATAAATTAGGGTTTGGGGTTACTTGAGTAAATTAATTATAAATTTTAA
*
7966302 AAAAATTAGATGAGGGTTTAGTGTTTAGGGTT
66 AAAAATTAGATTAGGGTTTAGTGTTTAGGGTT
* * * *
7966334 TTTAAGGAAAAAATCAAATACATTTGGGTTTGGGTTTACTTGAGTAAATTAATTATAAATTTTAA
1 TTTAAGAAAAAAATCAAATAAATTAGGGTTTGGGGTTACTTGAGTAAATTAATTATAAATTTTAA
* *
7966399 AAAAATTAGATTAGAGTTTAGTGTTTAAGG-T
66 AAAAATTAGATTAGGGTTTAGTGTTTAGGGTT
*
7966430 TTTAAG-GAAAAATCAAATAAATTAGGGTTTGGGGTT
1 TTTAAGAAAAAAATCAAATAAATTAGGGTTTGGGGTT
7966466 CAGAGTTACT
Statistics
Matches: 384, Mismatches: 33, Indels: 17
0.88 0.08 0.04
Matches are distributed among these distances:
94 79 0.21
95 35 0.09
96 16 0.04
97 112 0.29
98 54 0.14
100 48 0.12
101 40 0.10
ACGTcount: A:0.41, C:0.02, G:0.19, T:0.38
Consensus pattern (97 bp):
TTTAAGAAAAAAATCAAATAAATTAGGGTTTGGGGTTACTTGAGTAAATTAATTATAAATTTTAA
AAAAATTAGATTAGGGTTTAGTGTTTAGGGTT
Found at i:7966727 original size:126 final size:125
Alignment explanation
Indices: 7966497--7966915 Score: 653
Period size: 126 Copynumber: 3.3 Consensus size: 125
7966487 TTTGTTAATT
*
7966497 TAAAA-AAGCTCCCACGTGGACGCTCTTTTGCTATAGTAG-TTCTTGAAAAAATAAATTTGAGAA
1 TAAAAGAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTTC-TGAAAAAAT-AATTTGAGAA
* * *
7966560 GACGTTTCTGAGCAAATAGTGCCAAAAACGCTTTAAGCAGGATGTATTGTCAGCAAAAGTAC
64 GACGTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCAATGTCAGCAAAAGTAC
* * *
7966622 TAAAAGAAGCTCCCACGTGAATGCTCTTTTGCTACAATAGTTTCTGAAAAAATAATTCTGAGAAG
1 TAAAAGAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTTCTGAAAAAATAATT-TGAGAAG
*
7966687 ACGTTTCTGAGCAAATAGTGTCAAAAATGCTTTAAGCAGGATGCAATGTCAGCAAAAGTAC
65 ACGTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCAATGTCAGCAAAAGTAC
* * *
7966748 TGAAAGAAGCTCCCACGTGGACGCTCTTTTGATACAGTAGTTTCTGAAAAAATAATTTTAAGAAG
1 TAAAAGAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTTCTGAAAAAATAA-TTTGAGAAG
* *
7966813 ATGTTTCTGAGTAAATAGTGTCAAAAACGCTTTAAGCAGGATGCAATGTCAGCAAAAGTAC
65 ACGTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCAATGTCAGCAAAAGTAC
* *
7966874 TGAAAGAAGCTCCCATGTGGACGCTCTTTTGCTACAGTAGTT
1 TAAAAGAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTT
7966916 CCTATTTGGC
Statistics
Matches: 271, Mismatches: 19, Indels: 7
0.91 0.06 0.02
Matches are distributed among these distances:
125 9 0.03
126 257 0.95
127 5 0.02
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (125 bp):
TAAAAGAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTTCTGAAAAAATAATTTGAGAAGA
CGTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCAATGTCAGCAAAAGTAC
Found at i:7970189 original size:21 final size:21
Alignment explanation
Indices: 7970160--7970205 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
7970150 CTTTGTCCAG
*
7970160 CTTCTGGCGAGGG-TTGTGGTT
1 CTTCTGGCG-GGGATTCTGGTT
7970181 ACTTC-GGCGGGGATTCTGGTT
1 -CTTCTGGCGGGGATTCTGGTT
7970202 CTTC
1 CTTC
7970206 CGATAGGGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
20 7 0.32
21 11 0.50
22 4 0.18
ACGTcount: A:0.07, C:0.20, G:0.37, T:0.37
Consensus pattern (21 bp):
CTTCTGGCGGGGATTCTGGTT
Found at i:7973812 original size:104 final size:105
Alignment explanation
Indices: 7973466--7973828 Score: 432
Period size: 105 Copynumber: 3.5 Consensus size: 105
7973456 TGACACTAAG
* * ** * * * **
7973466 AAATTTTTTTATTGATTTTAGTGTTTCCACATGAAGAGGCGACACCCAAAAAGT-AAAAAAAAAA
1 AAATTTTTTTACTGATTTTGGTGCCTCTACATGAAGAGGCGGCACCGAAAATTTCAAAAAAAAAA
* * *
7973530 TTATCGGTGTCACCACATTTAGAGTTAGCACCAGCA-AAAT
66 TTATTGGTGCCACCACATTTAGAGTTGGCACCAG-AGAAAT
*
7973570 -AATTTTTTTACTGATTTTGGTGCCTCTACATAAAGAGGCGGCACCGAAAATTTCAAAAAAAAAA
1 AAATTTTTTTACTGATTTTGGTGCCTCTACATGAAGAGGCGGCACCGAAAATTTCAAAAAAAAAA
* * * *
7973634 TTTGTTGGTGCCGCCACATTTAGAGTTGGCATCAGGGAAA-
66 -TTATTGGTGCCACCACATTTAGAGTTGGCACCAGAGAAAT
** ** *
7973674 ATTTTTTTTTACTGATTTTGGTGCCTCTACATGAAGAGGCGGCATTGAAAA-TTC-CAAAAAAAA
1 AAATTTTTTTACTGATTTTGGTGCCTCTACATGAAGAGGCGGCACCGAAAATTTCAAAAAAAAAA
* *
7973737 TTATTAGTGCCACCACATTTGGAGTTGGCACCAGAGAAAT
66 TTATTGGTGCCACCACATTTAGAGTTGGCACCAGAGAAAT
*
7973777 AAATTATTTTTACAGATTTTGGTGCCTCTACATGAAGAGGCGGCACCGAAAA
1 AAATT-TTTTTACTGATTTTGGTGCCTCTACATGAAGAGGCGGCACCGAAAA
7973829 AGTAACAAAA
Statistics
Matches: 219, Mismatches: 34, Indels: 12
0.83 0.13 0.05
Matches are distributed among these distances:
102 33 0.15
103 54 0.25
104 56 0.26
105 76 0.35
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (105 bp):
AAATTTTTTTACTGATTTTGGTGCCTCTACATGAAGAGGCGGCACCGAAAATTTCAAAAAAAAAA
TTATTGGTGCCACCACATTTAGAGTTGGCACCAGAGAAAT
Found at i:7975513 original size:34 final size:34
Alignment explanation
Indices: 7975459--7975545 Score: 95
Period size: 34 Copynumber: 2.6 Consensus size: 34
7975449 AGCATTTAAT
* * * * *
7975459 TATGCTTTTAACAGAACAATA-CGATATCAATTAG
1 TATGCTTATAACAGATCAATATAGATA-CAAATAA
* *
7975493 TATGCTTATAACAGCTCAATATAGTTACAAATAA
1 TATGCTTATAACAGATCAATATAGATACAAATAA
7975527 TATGCTTATAACAGATCAA
1 TATGCTTATAACAGATCAA
7975546 CTCAATACCA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
34 41 0.93
35 3 0.07
ACGTcount: A:0.43, C:0.15, G:0.10, T:0.32
Consensus pattern (34 bp):
TATGCTTATAACAGATCAATATAGATACAAATAA
Found at i:7976472 original size:11 final size:11
Alignment explanation
Indices: 7976452--7976485 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
7976442 AATATGGTGT
*
7976452 AAAGAGAATAG
1 AAAGAGAATAA
*
7976463 AAAGAAAATAA
1 AAAGAGAATAA
7976474 AAAGAGAATAA
1 AAAGAGAATAA
7976485 A
1 A
7976486 TAAAAGGATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.09
Consensus pattern (11 bp):
AAAGAGAATAA
Found at i:7978941 original size:45 final size:46
Alignment explanation
Indices: 7978843--7978955 Score: 187
Period size: 46 Copynumber: 2.5 Consensus size: 46
7978833 TTTGAGTACT
*
7978843 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTCTAGCTACACTTA
7978889 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTCTAGCTACACTTA
*
7978934 TCTGATC-AGGGAC-AAGTGATAA
1 TCTGATCAAGTGACAAAGTGATAA
7978956 ATGATCATAC
Statistics
Matches: 65, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
43 9 0.14
44 5 0.08
45 19 0.29
46 32 0.49
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (46 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTCTAGCTACACTTA
Found at i:7981460 original size:25 final size:24
Alignment explanation
Indices: 7981422--7981469 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
7981412 ATTTATTTTC
7981422 TTTTTTGTTTCTCTATTTGTTTGA
1 TTTTTTGTTTCTCTATTTGTTTGA
* *
7981446 TTTTTTTTTTACTCTTTTTGTTTG
1 TTTTTTGTTT-CTCTATTTGTTTG
7981470 GAGTATATGC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 9 0.43
25 12 0.57
ACGTcount: A:0.06, C:0.08, G:0.10, T:0.75
Consensus pattern (24 bp):
TTTTTTGTTTCTCTATTTGTTTGA
Found at i:7983936 original size:20 final size:20
Alignment explanation
Indices: 7983911--7983950 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7983901 AATATTTTCC
*
7983911 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
7983931 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
7983951 TTATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:7983965 original size:34 final size:35
Alignment explanation
Indices: 7983899--7983965 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
7983889 CAAACACCAG
*
7983899 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
7983934 AAAACATTTTCCAG-AAATTATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
7983966 CATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:7984201 original size:16 final size:16
Alignment explanation
Indices: 7984180--7984227 Score: 78
Period size: 16 Copynumber: 3.0 Consensus size: 16
7984170 CAATTCAAAT
7984180 TTAAAAATAATCTAAA
1 TTAAAAATAATCTAAA
7984196 TTAAAAATAATCTAAA
1 TTAAAAATAATCTAAA
* *
7984212 TTTAAAATAACCTAAA
1 TTAAAAATAATCTAAA
7984228 GCTAAAATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.31
Consensus pattern (16 bp):
TTAAAAATAATCTAAA
Found at i:7984233 original size:16 final size:16
Alignment explanation
Indices: 7984199--7984237 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7984189 ATCTAAATTA
* **
7984199 AAAATAATCTAAATTT
1 AAAATAACCTAAAGCT
7984215 AAAATAACCTAAAGCT
1 AAAATAACCTAAAGCT
7984231 AAAATAA
1 AAAATAA
7984238 TCCATCATCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.62, C:0.10, G:0.03, T:0.26
Consensus pattern (16 bp):
AAAATAACCTAAAGCT
Found at i:7984235 original size:32 final size:33
Alignment explanation
Indices: 7984176--7984239 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 33
7984166 GCAACAATTC
* *
7984176 AAATTTAAAAATAATCTAAATTAAAAATAATCT
1 AAATTTAAAAATAACCTAAACTAAAAATAATCT
7984209 AAATTT-AAAATAACCTAAAGCT-AAAATAATC
1 AAATTTAAAAATAACCTAAA-CTAAAAATAATC
7984240 CATCATCATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 21 0.75
33 7 0.25
ACGTcount: A:0.59, C:0.09, G:0.02, T:0.30
Consensus pattern (33 bp):
AAATTTAAAAATAACCTAAACTAAAAATAATCT
Found at i:7985960 original size:29 final size:29
Alignment explanation
Indices: 7985926--7985981 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
7985916 TTGATTTTTT
* *
7985926 TTTAATAGTATAGGGATTAAATTGATCCA
1 TTTAATAGTAAAGGGACTAAATTGATCCA
*
7985955 TTTAATAGTAAAGGGACTAATTTGATC
1 TTTAATAGTAAAGGGACTAAATTGATC
7985982 TAGTCCTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.38
Consensus pattern (29 bp):
TTTAATAGTAAAGGGACTAAATTGATCCA
Found at i:7989064 original size:24 final size:23
Alignment explanation
Indices: 7989000--7989066 Score: 62
Period size: 25 Copynumber: 2.8 Consensus size: 23
7988990 TATACTTTTG
* *
7989000 TTTAAAAAAAAACCATTTTTTCTT
1 TTTAAAAAAAAACCCTTTTTGC-T
* *
7989024 TCTTAAAAATAACCCCTTTTTAGCT
1 T-TTAAAAAAAAACCCTTTTT-GCT
*
7989049 TTTAAAAAAGAACCCTTT
1 TTTAAAAAAAAACCCTTT
7989067 GGTAATATCT
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
24 15 0.44
25 18 0.53
26 1 0.03
ACGTcount: A:0.39, C:0.18, G:0.03, T:0.40
Consensus pattern (23 bp):
TTTAAAAAAAAACCCTTTTTGCT
Found at i:7994959 original size:6 final size:6
Alignment explanation
Indices: 7994948--7994973 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
7994938 TTAAAAGATT
7994948 TTAAAA TTAAAA TTAAAA TTAAAA TT
1 TTAAAA TTAAAA TTAAAA TTAAAA TT
7994974 TTAAAATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (6 bp):
TTAAAA
Found at i:8006724 original size:22 final size:22
Alignment explanation
Indices: 8006668--8006710 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
8006658 TATTAATTAG
8006668 AAATAACATTATCCTTTTTTTT
1 AAATAACATTATCCTTTTTTTT
8006690 AAATAACATTATCCTTTTTTT
1 AAATAACATTATCCTTTTTTT
8006711 ACATCACATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.14, G:0.00, T:0.53
Consensus pattern (22 bp):
AAATAACATTATCCTTTTTTTT
Found at i:8012246 original size:7 final size:7
Alignment explanation
Indices: 8012236--8012276 Score: 50
Period size: 7 Copynumber: 6.1 Consensus size: 7
8012226 AACTACAAAC
8012236 TAATATA
1 TAATATA
8012243 TAATATA
1 TAATATA
*
8012250 TAATAAA
1 TAATATA
*
8012257 TAATAAA
1 TAATATA
8012264 TAATA-A
1 TAATATA
8012270 -AATATA
1 TAATATA
8012276 T
1 T
8012277 TATTAAAGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
5 4 0.13
6 2 0.06
7 25 0.81
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (7 bp):
TAATATA
Found at i:8014220 original size:20 final size:19
Alignment explanation
Indices: 8014197--8014242 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
8014187 CCATGCTATA
8014197 TATTATAAAAATAATATATT
1 TATTATAAAAA-AATATATT
*
8014217 TATTCATAAAAAATTATATT
1 TATT-ATAAAAAAATATATT
*
8014237 TTTTAT
1 TATTAT
8014243 CATAACTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 2 0.09
20 14 0.61
21 7 0.30
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (19 bp):
TATTATAAAAAAATATATT
Found at i:8015870 original size:21 final size:21
Alignment explanation
Indices: 8015844--8015884 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
8015834 GACGAGTAAC
8015844 AGATCAGACAAATCATATCAT
1 AGATCAGACAAATCATATCAT
* * *
8015865 AGATCATACATATCGTATCA
1 AGATCAGACAAATCATATCA
8015885 CACCATATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.44, C:0.20, G:0.10, T:0.27
Consensus pattern (21 bp):
AGATCAGACAAATCATATCAT
Found at i:8017351 original size:25 final size:25
Alignment explanation
Indices: 8017315--8017383 Score: 75
Period size: 25 Copynumber: 2.8 Consensus size: 25
8017305 TTACCAAATC
*
8017315 CAGCTCTTATGAGCTTACCGATACT
1 CAGCTCATATGAGCTTACCGATACT
* * * *
8017340 CAGTTCATATGAGCTTATCGTTATT
1 CAGCTCATATGAGCTTACCGATACT
* *
8017365 CAGCTCAGAGGAGCTTACC
1 CAGCTCATATGAGCTTACC
8017384 ATTTATCGCT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (25 bp):
CAGCTCATATGAGCTTACCGATACT
Found at i:8023153 original size:40 final size:40
Alignment explanation
Indices: 8023094--8023223 Score: 153
Period size: 40 Copynumber: 3.4 Consensus size: 40
8023084 GAGATTTGTG
8023094 CTAGTCGGATAAACAGACGAGATCGAATGTGTGCCCAGCA
1 CTAGTCGGATAAACAGACGAGATCGAATGTGTGCCCAGCA
* * *
8023134 CTAGTTGGATAAACTGACGAGATCGAATGTGTGCCC-GATA
1 CTAGTCGGATAAACAGACGAGATCGAATGTGTGCCCAG-CA
* * * *
8023174 GTAGTCGAATAAACCGAC-A-AT-G-ATTTGTGCCCAGCA
1 CTAGTCGGATAAACAGACGAGATCGAATGTGTGCCCAGCA
8023210 CTAGTCGGATAAAC
1 CTAGTCGGATAAAC
8023224 CGACAATTAC
Statistics
Matches: 77, Mismatches: 11, Indels: 8
0.80 0.11 0.08
Matches are distributed among these distances:
36 22 0.29
37 2 0.03
38 2 0.03
39 2 0.03
40 49 0.64
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (40 bp):
CTAGTCGGATAAACAGACGAGATCGAATGTGTGCCCAGCA
Found at i:8025063 original size:13 final size:14
Alignment explanation
Indices: 8025037--8025065 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
8025027 TTTTTTATCA
8025037 AATAAAATTTAATT
1 AATAAAATTTAATT
8025051 AATAAAA-TTAATT
1 AATAAAATTTAATT
8025064 AA
1 AA
8025066 AATAAATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
AATAAAATTTAATT
Found at i:8025174 original size:19 final size:19
Alignment explanation
Indices: 8025133--8025194 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
8025123 ATTGAATTTG
* * * *
8025133 AAAATTAGACTTGAGATCG
1 AAAATTGGACTCGAGAACC
8025152 AAAATTGGACTCGAGAACC
1 AAAATTGGACTCGAGAACC
*
8025171 AAAAATTGAGA-TCGAGACCC
1 -AAAATTG-GACTCGAGAACC
8025191 AAAA
1 AAAA
8025195 CTAGTTGAAC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 19 0.53
20 15 0.42
21 2 0.06
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.18
Consensus pattern (19 bp):
AAAATTGGACTCGAGAACC
Found at i:8025177 original size:20 final size:20
Alignment explanation
Indices: 8025152--8025194 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
8025142 CTTGAGATCG
8025152 AAAATTG-GACTCGAGAACCA
1 AAAATTGAGA-TCGAGAACCA
*
8025172 AAAATTGAGATCGAGACCCA
1 AAAATTGAGATCGAGAACCA
8025192 AAA
1 AAA
8025195 CTAGTTGAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 19 0.90
21 2 0.10
ACGTcount: A:0.49, C:0.19, G:0.19, T:0.14
Consensus pattern (20 bp):
AAAATTGAGATCGAGAACCA
Found at i:8025860 original size:31 final size:31
Alignment explanation
Indices: 8025820--8025919 Score: 114
Period size: 31 Copynumber: 3.3 Consensus size: 31
8025810 TATTAAATTA
*
8025820 AATTAAATATTTATCTTGATAGTATTTTATT
1 AATTTAATATTTATCTTGATAGTATTTTATT
* * * **
8025851 AATTTAATATTAAT-GTGAGA-TATTAAATTT
1 AATTTAATATTTATCTTGATAGTATTTTA-TT
*
8025881 GATTTAATATTTATCTTGATAGTATTTTATT
1 AATTTAATATTTATCTTGATAGTATTTTATT
8025912 AATTTAAT
1 AATTTAAT
8025920 GTGAGTAATT
Statistics
Matches: 53, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
29 5 0.09
30 18 0.34
31 25 0.47
32 5 0.09
ACGTcount: A:0.37, C:0.02, G:0.08, T:0.53
Consensus pattern (31 bp):
AATTTAATATTTATCTTGATAGTATTTTATT
Found at i:8031024 original size:63 final size:63
Alignment explanation
Indices: 8030925--8031050 Score: 189
Period size: 63 Copynumber: 2.0 Consensus size: 63
8030915 TTATCTACCC
** * * *
8030925 TTAATGCTCTCGTCTTATGCATTTTGAAATTAAACCGGTCAGTCTTTACTTGAGCACAAAAAA
1 TTAATGCTCTCACCATACGCATTTTGAAATTAAACCGGTCAATCTTTACTTGAGCACAAAAAA
* *
8030988 TTAATGCTCTCACCATACGCATTTTGAAATTAAACCGGTCAATTTTTACTTGAGCATAAAAAA
1 TTAATGCTCTCACCATACGCATTTTGAAATTAAACCGGTCAATCTTTACTTGAGCACAAAAAA
8031051 ATTATTTAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
63 56 1.00
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (63 bp):
TTAATGCTCTCACCATACGCATTTTGAAATTAAACCGGTCAATCTTTACTTGAGCACAAAAAA
Found at i:8033238 original size:22 final size:20
Alignment explanation
Indices: 8033213--8033258 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 20
8033203 AATTAATGAT
8033213 ATTATAAAATTAAAGAGATTAA
1 ATTATAAAATT--AGAGATTAA
8033235 ATTATTAAAATGTAGAGATTAA
1 ATTA-TAAAAT-TAGAGATTAA
8033257 AT
1 AT
8033259 ATCAAATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 15 0.68
23 6 0.27
24 1 0.05
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.35
Consensus pattern (20 bp):
ATTATAAAATTAGAGATTAA
Found at i:8038858 original size:27 final size:28
Alignment explanation
Indices: 8038790--8038860 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 28
8038780 AACCCCGTGA
* *
8038790 CAAGTGGTATCCGAG-CTAGATTCAAAC
1 CAAGTGGTATCCAAGCCAAGATTCAAAC
* *
8038817 CAAGTAAGTATCCAAGCCAAG-TTCGAAC
1 CAAGT-GGTATCCAAGCCAAGATTCAAAC
8038845 CAAGTGGTATCCAAGC
1 CAAGTGGTATCCAAGC
8038861 TGTTGGTTTG
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 15 0.41
28 19 0.51
29 3 0.08
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.20
Consensus pattern (28 bp):
CAAGTGGTATCCAAGCCAAGATTCAAAC
Found at i:8051887 original size:24 final size:24
Alignment explanation
Indices: 8051860--8051909 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
8051850 TTTCATTCTT
*
8051860 TTAA-CTTTTAACTTTTCATCTTTC
1 TTAATCTTTTAACATTT-ATCTTTC
* *
8051884 TTAATTTTTTACCATTTATCTTTC
1 TTAATCTTTTAACATTTATCTTTC
8051908 TT
1 TT
8051910 TTAACCCTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.20, C:0.18, G:0.00, T:0.62
Consensus pattern (24 bp):
TTAATCTTTTAACATTTATCTTTC
Found at i:8053071 original size:23 final size:22
Alignment explanation
Indices: 8053045--8053088 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
8053035 ATCCCAAAAA
* *
8053045 TGATGAAATGAAGGAAAATTTTT
1 TGAT-AAAAGAAGAAAAATTTTT
*
8053068 TGATAAAAGATGAAAAATTTT
1 TGATAAAAGAAGAAAAATTTT
8053089 ACTATGATGC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.48, C:0.00, G:0.18, T:0.34
Consensus pattern (22 bp):
TGATAAAAGAAGAAAAATTTTT
Found at i:8054355 original size:9 final size:9
Alignment explanation
Indices: 8054341--8054416 Score: 98
Period size: 9 Copynumber: 8.4 Consensus size: 9
8054331 TTTGGTTAAA
8054341 AATTAACCG
1 AATTAACCG
*
8054350 AATTAACCT
1 AATTAACCG
*
8054359 AATTAACCA
1 AATTAACCG
*
8054368 AATTACCCG
1 AATTAACCG
*
8054377 AATTAACTG
1 AATTAACCG
*
8054386 AATTACCCG
1 AATTAACCG
*
8054395 AATTACCCG
1 AATTAACCG
8054404 AATTAACCG
1 AATTAACCG
8054413 AATT
1 AATT
8054417 GAATCACTAC
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 58 1.00
ACGTcount: A:0.42, C:0.24, G:0.08, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:8057481 original size:25 final size:25
Alignment explanation
Indices: 8057425--8057516 Score: 78
Period size: 25 Copynumber: 3.7 Consensus size: 25
8057415 CTCCTCCGAT
* * *
8057425 CTGAATAACAAGAAGCTCATGCAAG
1 CTGAATAACGAGAAGCTCAAGCGAG
* * *
8057450 CTAAATAACGGGAAGCTCAAGCGGG
1 CTGAATAACGAGAAGCTCAAGCGAG
*
8057475 CTGAATATCGAGAAGCTCATA-CGAG
1 CTGAATAACGAGAAGCTCA-AGCGAG
** *
8057500 CTGTTTAACGGGAAGCT
1 CTGAATAACGAGAAGCT
8057517 TATGTGAGCT
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
25 51 0.98
26 1 0.02
ACGTcount: A:0.36, C:0.20, G:0.26, T:0.18
Consensus pattern (25 bp):
CTGAATAACGAGAAGCTCAAGCGAG
Found at i:8057525 original size:25 final size:26
Alignment explanation
Indices: 8057481--8057553 Score: 78
Period size: 25 Copynumber: 2.9 Consensus size: 26
8057471 CGGGCTGAAT
* * *
8057481 ATCGAGAAGCTCATACGAGCTGTTTA
1 ATCGGGAAGCTCATATGAGCTGTTAA
* * *
8057507 A-CGGGAAGCTTATGTGAGCT-ATAA
1 ATCGGGAAGCTCATATGAGCTGTTAA
8057531 ATCGGGAAGCTCATATGAGCTGT
1 ATCGGGAAGCTCATATGAGCTGT
8057554 GGTGTGTCCA
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
24 3 0.08
25 32 0.89
26 1 0.03
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.26
Consensus pattern (26 bp):
ATCGGGAAGCTCATATGAGCTGTTAA
Found at i:8061154 original size:24 final size:24
Alignment explanation
Indices: 8061090--8061159 Score: 86
Period size: 24 Copynumber: 2.9 Consensus size: 24
8061080 TTCGTTATAA
*
8061090 TTAACTTTTCACCTTTCATCTTCC
1 TTAACTTTTCACCTTTTATCTTCC
* **
8061114 TTAACTTTTCACTTTTTATCTTTT
1 TTAACTTTTCACCTTTTATCTTCC
*
8061138 TTAACTCTTCACCTTTTTATCT
1 TTAACTTTTCACC-TTTTATCT
8061160 CATTGTATCC
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
24 31 0.79
25 8 0.21
ACGTcount: A:0.17, C:0.26, G:0.00, T:0.57
Consensus pattern (24 bp):
TTAACTTTTCACCTTTTATCTTCC
Found at i:8069559 original size:16 final size:16
Alignment explanation
Indices: 8069538--8069570 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
8069528 CTTTATTTTG
8069538 CCGTGTTGACTACAAT
1 CCGTGTTGACTACAAT
8069554 CCGTGTTGACTACAAT
1 CCGTGTTGACTACAAT
8069570 C
1 C
8069571 TCCAACAAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (16 bp):
CCGTGTTGACTACAAT
Found at i:8073860 original size:26 final size:24
Alignment explanation
Indices: 8073793--8073860 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 24
8073783 ATTTAAATAA
*
8073793 AAATAATTTAAATATT--TTATTT
1 AAATAATTTAAATATTAATTAATT
* *
8073815 AAATAATTAAAATAACTAATTAATT
1 AAATAATTTAAAT-ATTAATTAATT
8073840 AACATAATATTAAATATTAAT
1 AA-ATAAT-TTAAATATTAAT
8073861 AAAAATGGTT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
22 12 0.33
23 2 0.06
25 7 0.19
26 10 0.28
27 5 0.14
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (24 bp):
AAATAATTTAAATATTAATTAATT
Found at i:8076988 original size:9 final size:9
Alignment explanation
Indices: 8076976--8077052 Score: 73
Period size: 9 Copynumber: 8.4 Consensus size: 9
8076966 AAATAAAAAA
8076976 AATTCGGGT
1 AATTCGGGT
8076985 AATTCGGGT
1 AATTCGGGT
* **
8076994 ATTTTTTGGT
1 A-ATTCGGGT
*
8077004 AATTCGGTT
1 AATTCGGGT
***
8077013 AATTCAATT
1 AATTCGGGT
*
8077022 AATTCGGTT
1 AATTCGGGT
8077031 AATTCGGGT
1 AATTCGGGT
8077040 AATTCGGGT
1 AATTCGGGT
8077049 AATT
1 AATT
8077053 TTTAACCAAA
Statistics
Matches: 55, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
9 49 0.89
10 6 0.11
ACGTcount: A:0.25, C:0.09, G:0.23, T:0.43
Consensus pattern (9 bp):
AATTCGGGT
Found at i:8081039 original size:52 final size:52
Alignment explanation
Indices: 8080884--8081044 Score: 139
Period size: 53 Copynumber: 3.0 Consensus size: 52
8080874 AATAGCCAAA
* * *
8080884 ACCCACTTTATCAGATAAAAAAAATTTTGGGTTGGGGGTACTAGATGGTTGGC
1 ACCCACTTTATCAGAT-AAAAAATTTTTGGGTTGGGGGAACTAGATGGTCGGC
* * * ** ** *
8080937 A-TCACCTTTTTCATATTAAAAAATATTTT-TTTATGCTGGCAC-AGTAATGGTCGGC
1 ACCCA-CTTTATCAGA-TAAAAAAT-TTTTGGGT-TGGGGGAACTAG--ATGGTCGGC
8080992 ACCCACTTTATCAGATAAAAAATTTTTGGGTTGGGGGAACTAGATGGTCGGC
1 ACCCACTTTATCAGATAAAAAATTTTTGGGTTGGGGGAACTAGATGGTCGGC
8081044 A
1 A
8081045 TCAGCTATTT
Statistics
Matches: 81, Mismatches: 18, Indels: 19
0.69 0.15 0.16
Matches are distributed among these distances:
52 12 0.15
53 28 0.35
54 22 0.27
55 17 0.21
56 2 0.02
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (52 bp):
ACCCACTTTATCAGATAAAAAATTTTTGGGTTGGGGGAACTAGATGGTCGGC
Found at i:8081528 original size:3 final size:3
Alignment explanation
Indices: 8081520--8081553 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
8081510 AAATTAGTCT
8081520 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA T
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA T
8081554 CTTGAGACAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.35
Consensus pattern (3 bp):
TGA
Found at i:8086166 original size:20 final size:20
Alignment explanation
Indices: 8086141--8086190 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
8086131 TGGCTTAAAA
8086141 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
8086161 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
8086178 GTGGTAGTGGATT
1 TTGGTAGTGGATT
8086191 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:8090803 original size:20 final size:20
Alignment explanation
Indices: 8090778--8090827 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
8090768 TGGCTTAAAA
8090778 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
8090798 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
8090815 GTGGTAGTGGATT
1 TTGGTAGTGGATT
8090828 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:8098452 original size:15 final size:15
Alignment explanation
Indices: 8098432--8098483 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
8098422 ACACACGGCC
8098432 GTGTCACCTGACCGT
1 GTGTCACCTGACCGT
* *
8098447 GTGTCACAC--ACGGCC
1 GTGTCAC-CTGACCG-T
8098462 GTGTCACCTGACCGT
1 GTGTCACCTGACCGT
8098477 GTGTCAC
1 GTGTCAC
8098484 ACACGACTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
14 4 0.14
15 21 0.72
16 4 0.14
ACGTcount: A:0.15, C:0.35, G:0.27, T:0.23
Consensus pattern (15 bp):
GTGTCACCTGACCGT
Found at i:8098457 original size:30 final size:30
Alignment explanation
Indices: 8098422--8098488 Score: 134
Period size: 30 Copynumber: 2.2 Consensus size: 30
8098412 GCCAAAGGGG
8098422 ACACACGGCCGTGTCACCTGACCGTGTGTC
1 ACACACGGCCGTGTCACCTGACCGTGTGTC
8098452 ACACACGGCCGTGTCACCTGACCGTGTGTC
1 ACACACGGCCGTGTCACCTGACCGTGTGTC
8098482 ACACACG
1 ACACACG
8098489 ACTGAGACAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.19, C:0.37, G:0.25, T:0.18
Consensus pattern (30 bp):
ACACACGGCCGTGTCACCTGACCGTGTGTC
Found at i:8102526 original size:43 final size:42
Alignment explanation
Indices: 8102479--8102599 Score: 120
Period size: 43 Copynumber: 2.8 Consensus size: 42
8102469 TATCGTACCA
* **
8102479 ATGCCAT-GTCCCAGAC-ATAGTCTTACATGGAAATCTCGTATCG
1 ATGCCATAG-CCCAG-CTATAGTCTTACA-CGAAATCTCAAATCG
*
8102522 ATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCAAATCG
1 ATGCC-ATAGCCCAGCTATAGTCTTACACGAAATCTCAAATCG
* * *
8102565 ATGCCAATAGCTCAGCTATGGTATTACACGAAATC
1 ATGCC-ATAGCCCAGCTATAGTCTTACACGAAATC
8102600 ACACCTCGGA
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
43 51 0.74
44 17 0.25
45 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (42 bp):
ATGCCATAGCCCAGCTATAGTCTTACACGAAATCTCAAATCG
Found at i:8103827 original size:40 final size:40
Alignment explanation
Indices: 8103783--8103865 Score: 157
Period size: 40 Copynumber: 2.1 Consensus size: 40
8103773 AATATATTCG
*
8103783 AATGTACTCAAATCCCTCGTTCAATCCAAACTGCGCATTA
1 AATGTACTCAAATCCCGCGTTCAATCCAAACTGCGCATTA
8103823 AATGTACTCAAATCCCGCGTTCAATCCAAACTGCGCATTA
1 AATGTACTCAAATCCCGCGTTCAATCCAAACTGCGCATTA
8103863 AAT
1 AAT
8103866 TCAATAATAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.34, C:0.29, G:0.11, T:0.27
Consensus pattern (40 bp):
AATGTACTCAAATCCCGCGTTCAATCCAAACTGCGCATTA
Found at i:8115858 original size:8 final size:8
Alignment explanation
Indices: 8115847--8115905 Score: 52
Period size: 8 Copynumber: 7.6 Consensus size: 8
8115837 AAAGTTTAAA
*
8115847 AAAAGTAT
1 AAAATTAT
8115855 AAAATTAT
1 AAAATTAT
8115863 AAAATTAT
1 AAAATTAT
*
8115871 -AAATTTT
1 AAAATTAT
*
8115878 ATAATTAT
1 AAAATTAT
*
8115886 AAACTT-T
1 AAAATTAT
8115893 AAAAATTA-
1 -AAAATTAT
8115901 AAAAT
1 AAAAT
8115906 AATATATAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
7 12 0.29
8 29 0.71
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (8 bp):
AAAATTAT
Found at i:8115915 original size:20 final size:19
Alignment explanation
Indices: 8115892--8115938 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
8115882 TTATAAACTT
8115892 TAAAAATT-AAAAATAATATA
1 TAAAAATTGAAAAAT-AT-TA
* *
8115912 TAAAATTTGAAAAATGTTA
1 TAAAAATTGAAAAATATTA
8115931 TAAAAATT
1 TAAAAATT
8115939 TTAAAAAAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 9 0.39
20 8 0.35
21 6 0.26
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (19 bp):
TAAAAATTGAAAAATATTA
Found at i:8115926 original size:21 final size:20
Alignment explanation
Indices: 8115892--8115945 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
8115882 TTATAAACTT
*
8115892 TAAAAATTAAAAATAATATA
1 TAAAATTTAAAAATAATATA
**
8115912 TAAAATTTGAAAAATGTTATA
1 TAAAATTT-AAAAATAATATA
8115933 -AAAATTTTAAAAA
1 TAAAA-TTTAAAAA
8115946 AGTATCTTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 16 0.55
21 13 0.45
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (20 bp):
TAAAATTTAAAAATAATATA
Found at i:8116022 original size:19 final size:19
Alignment explanation
Indices: 8115994--8116033 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
8115984 TTGAAAGAAA
*
8115994 TTAC-ATTTTTTTATAATTT
1 TTACAATTTTTTTA-CATTT
8116013 TTACAATTTTTTTACATTT
1 TTACAATTTTTTTACATTT
8116032 TT
1 TT
8116034 GTAATAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.25, C:0.07, G:0.00, T:0.68
Consensus pattern (19 bp):
TTACAATTTTTTTACATTT
Found at i:8116155 original size:19 final size:19
Alignment explanation
Indices: 8116133--8116180 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
8116123 AAGATTTAAA
*
8116133 TATATTTTTCTAAATTTTT
1 TATATTTTTATAAATTTTT
* ***
8116152 TATATATTTATTTCTTTTT
1 TATATTTTTATAAATTTTT
8116171 TATATTTTTA
1 TATATTTTTA
8116181 ATATGTATAT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (19 bp):
TATATTTTTATAAATTTTT
Found at i:8120179 original size:19 final size:19
Alignment explanation
Indices: 8120155--8120193 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
8120145 TAAGTGGAAT
8120155 TTTTCCAATAAGCTAGTTA
1 TTTTCCAATAAGCTAGTTA
8120174 TTTTCCAATAAGCTAGTTA
1 TTTTCCAATAAGCTAGTTA
8120193 T
1 T
8120194 AGCTACCAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.15, G:0.10, T:0.44
Consensus pattern (19 bp):
TTTTCCAATAAGCTAGTTA
Found at i:8122263 original size:22 final size:21
Alignment explanation
Indices: 8122232--8122273 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
8122222 TTCCTGCAAA
*
8122232 AATAAAATAGTAAAAATAAAT
1 AATAAAATAGGAAAAATAAAT
*
8122253 AATAATAATAGGAAAATTAAA
1 AATAA-AATAGGAAAAATAAA
8122274 ATGTTTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (21 bp):
AATAAAATAGGAAAAATAAAT
Found at i:8133818 original size:19 final size:19
Alignment explanation
Indices: 8133777--8133819 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
8133767 ATAGCGCATA
* *
8133777 AAGTGCATATTGGCATACG
1 AAGTGCATACTGGCACACG
* *
8133796 AAGTGCATCCTGGCACACT
1 AAGTGCATACTGGCACACG
8133815 AAGTG
1 AAGTG
8133820 TGTACTGGCG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (19 bp):
AAGTGCATACTGGCACACG
Found at i:8138086 original size:34 final size:33
Alignment explanation
Indices: 8138044--8138113 Score: 113
Period size: 34 Copynumber: 2.1 Consensus size: 33
8138034 AGGGCTCAAT
**
8138044 TTTCTCGAAAAATCCCGAACATCGAATGTTGCA
1 TTTCTCGAAAAATCCCGAACATCGAATACTGCA
8138077 TTTCGTCGAAAAATCCCGAACATCGAATACTGCA
1 TTTC-TCGAAAAATCCCGAACATCGAATACTGCA
8138111 TTT
1 TTT
8138114 ATTTTAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
33 4 0.12
34 30 0.88
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (33 bp):
TTTCTCGAAAAATCCCGAACATCGAATACTGCA
Found at i:8138695 original size:3 final size:3
Alignment explanation
Indices: 8138687--8138750 Score: 67
Period size: 3 Copynumber: 20.3 Consensus size: 3
8138677 ATATATAGGT
* *
8138687 ATA ATA ATA ATA ATA ATA TTTA AT- ATA ATA ATAA ATA ATA CTA ATA
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA AT-A ATA ATA ATA ATA
8138733 ATA ATA CAGTA ATA ATA A
1 ATA ATA -A-TA ATA ATA A
8138751 CAATTTAACA
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
2 2 0.04
3 41 0.79
4 7 0.13
5 2 0.04
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:8140709 original size:24 final size:24
Alignment explanation
Indices: 8140659--8140710 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
8140649 TCTAAATTTA
* * *
8140659 TAATTCCTTCAAAAATTATAAGTT
1 TAATTCCTTCAAAAATGAAAAGGT
*
8140683 TAATTCCTTTAAAAATGAAAAGGT
1 TAATTCCTTCAAAAATGAAAAGGT
8140707 TAAT
1 TAAT
8140711 GTTAAAATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.38
Consensus pattern (24 bp):
TAATTCCTTCAAAAATGAAAAGGT
Found at i:8142819 original size:26 final size:28
Alignment explanation
Indices: 8142784--8142847 Score: 105
Period size: 28 Copynumber: 2.4 Consensus size: 28
8142774 ATAGAAAATA
8142784 ACCAAAATATTAT-AA-TTTTTTTATTT
1 ACCAAAATATTATAAAGTTTTTTTATTT
*
8142810 ATCAAAATATTATAAAGTTTTTTTATTT
1 ACCAAAATATTATAAAGTTTTTTTATTT
8142838 ACCAAAATAT
1 ACCAAAATAT
8142848 ATTAAAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
26 12 0.35
27 2 0.06
28 20 0.59
ACGTcount: A:0.42, C:0.08, G:0.02, T:0.48
Consensus pattern (28 bp):
ACCAAAATATTATAAAGTTTTTTTATTT
Found at i:8142935 original size:27 final size:27
Alignment explanation
Indices: 8142905--8142981 Score: 127
Period size: 27 Copynumber: 2.9 Consensus size: 27
8142895 AGCCAATCAC
* *
8142905 ATTGGCGGCACCAAAGGTGCCAATGTG
1 ATTGGCGGCACCAATGGTGCCAATATG
*
8142932 ATTGGCGGCACCAATGGTGCTAATATG
1 ATTGGCGGCACCAATGGTGCCAATATG
8142959 ATTGGCGGCACCAATGGTGCCAA
1 ATTGGCGGCACCAATGGTGCCAA
8142982 AGGACTAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.21
Consensus pattern (27 bp):
ATTGGCGGCACCAATGGTGCCAATATG
Found at i:8143309 original size:19 final size:19
Alignment explanation
Indices: 8143285--8143350 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
8143275 ATTAAAATAG
8143285 TTTAATTTAATAACTCTAT
1 TTTAATTTAATAACTCTAT
* *
8143304 TTTAATGTAATAA-ACTAT
1 TTTAATTTAATAACTCTAT
* *
8143322 TCTCATTTAATAACTCTAT
1 TTTAATTTAATAACTCTAT
8143341 TTTAATTTAA
1 TTTAATTTAA
8143351 AAAAATTAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
18 14 0.37
19 24 0.63
ACGTcount: A:0.38, C:0.11, G:0.02, T:0.50
Consensus pattern (19 bp):
TTTAATTTAATAACTCTAT
Found at i:8143615 original size:18 final size:19
Alignment explanation
Indices: 8143576--8143634 Score: 84
Period size: 19 Copynumber: 3.2 Consensus size: 19
8143566 ATTTTATATT
8143576 TTAAATGAAAATAGAGTTA
1 TTAAATGAAAATAGAGTTA
* *
8143595 TTAAATGAGAATAG-TTTA
1 TTAAATGAAAATAGAGTTA
*
8143613 TTAAATTAAAATAGAGTTA
1 TTAAATGAAAATAGAGTTA
8143632 TTA
1 TTA
8143635 CTTAATTAGA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
18 15 0.44
19 19 0.56
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (19 bp):
TTAAATGAAAATAGAGTTA
Found at i:8150275 original size:26 final size:26
Alignment explanation
Indices: 8150242--8150397 Score: 92
Period size: 26 Copynumber: 6.1 Consensus size: 26
8150232 TTATATATTT
8150242 TATTAAATTATATTTAATAATAATTA
1 TATTAAATTATATTTAATAATAATTA
* * *
8150268 TGTTAAATTATATTTTATAGT-ATTA
1 TATTAAATTATATTTAATAATAATTA
* *
8150293 TA-T--ATTATGATTTTAGAA-AATTCA
1 TATTAAATTAT-ATTTAATAATAATT-A
* * * * * *
8150317 TATAAGAAATTTTA-ATATTAAGAATTT
1 TAT--TAAATTATATTTAATAATAATTA
*
8150344 TATTAAATTATACTTAATAATAATTA
1 TATTAAATTATATTTAATAATAATTA
* * *
8150370 TGTTAAATTATATTTTATAGT-ATTA
1 TATTAAATTATATTTAATAATAATTA
8150395 TAT
1 TAT
8150398 ATTATGATTT
Statistics
Matches: 96, Mismatches: 24, Indels: 21
0.68 0.17 0.15
Matches are distributed among these distances:
22 5 0.05
23 10 0.10
24 4 0.04
25 18 0.19
26 44 0.46
27 6 0.06
28 5 0.05
29 4 0.04
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.50
Consensus pattern (26 bp):
TATTAAATTATATTTAATAATAATTA
Found at i:8150350 original size:102 final size:102
Alignment explanation
Indices: 8150238--8150576 Score: 428
Period size: 102 Copynumber: 3.1 Consensus size: 102
8150228 GAAATTATAT
8150238 ATTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATTATATATTATGA
1 ATTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATTATATATTATGA
8150303 TTTTAGAAAATTCATATAAGAA-ATTTTAATATTAAGA
66 TTTTAGAAAATTCATATAAGAATA-TTTAATATTAAGA
*
8150340 ATTTTATTAAATTATACTTAATAATAATTATGTTAAATTATATTTTATAGTATTATATATTATGA
1 ATTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATTATATATTATGA
8150405 TTTTAGAAAATTCATATAAGAATATTTAATATTAAGA
66 TTTTAGAAAATTCATATAAGAATATTTAATATTAAGA
*
8150442 ATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTA
1 ATTTTATTAAAT--TATA---T--TT--AATA-A--T-A-ATT-A-T-GTT-AAATTATATTTTA
* * * * * *
8150507 TAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAATA
48 TAGTATTATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGA
8150562 ATTTTATTAAATTAT
1 ATTTTATTAAATTAT
8150577 CTATTTTAAT
Statistics
Matches: 209, Mismatches: 9, Indels: 22
0.87 0.04 0.09
Matches are distributed among these distances:
102 111 0.53
103 1 0.00
104 4 0.02
109 2 0.01
111 4 0.02
112 1 0.00
114 1 0.00
115 1 0.00
116 3 0.01
117 1 0.00
118 4 0.02
119 2 0.01
120 74 0.35
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.49
Consensus pattern (102 bp):
ATTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATTATATATTATGA
TTTTAGAAAATTCATATAAGAATATTTAATATTAAGA
Found at i:8150490 original size:120 final size:120
Alignment explanation
Indices: 8150340--8150616 Score: 432
Period size: 120 Copynumber: 2.3 Consensus size: 120
8150330 AATATTAAGA
* * *
8150340 ATTTT-ATTAAATTATACTTAATAATAATTATGTTAAATTATATTTTATAGTATTATATATTATG
1 ATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTATCATATATTATG
* *
8150404 ATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATCATAT
66 ATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATTAAATCATAT
*
8150459 ATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATATTTTATAGTATCATATATTAT
1 ATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTTTATAGTATCATATATTAT
* * * * *
8150523 GATTTGAGTAAATTCATATAAGAATATTGATTATTAATAATTTTATTAAATTATCT
65 GATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATTAAATCATAT
8150579 ATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 ATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
8150617 ATATGATTAA
Statistics
Matches: 143, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
119 7 0.05
120 134 0.94
121 2 0.01
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.49
Consensus pattern (120 bp):
ATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTATCATATATTATG
ATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATTAAATCATAT
Found at i:8150816 original size:44 final size:45
Alignment explanation
Indices: 8150753--8150850 Score: 128
Period size: 45 Copynumber: 2.2 Consensus size: 45
8150743 CTATTACACC
* *
8150753 TCCATTCCATTCAACCAAACACA-AGA-ATACTATTACGCTTCTAT
1 TCCATTACATTCAACCAAACA-ATAGATATACTATTACGCCTCTAT
* * *
8150797 TCCATTACATTCAACCAAACAATTGATTTGCTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACAATAGATATACTATTACGCCTCTAT
8150842 TCCATTACA
1 TCCATTACA
8150851 ACGAACCAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
43 1 0.02
44 22 0.47
45 24 0.51
ACGTcount: A:0.34, C:0.29, G:0.05, T:0.33
Consensus pattern (45 bp):
TCCATTACATTCAACCAAACAATAGATATACTATTACGCCTCTAT
Found at i:8156957 original size:96 final size:96
Alignment explanation
Indices: 8156853--8157141 Score: 395
Period size: 97 Copynumber: 3.0 Consensus size: 96
8156843 AACAACTAGT
*
8156853 TTTATTTGA-TTTTTCCTTAAAAACCCTAAATACTAAACCCCAATCTAATTTTTTTAAAATTTAT
1 TTTATTTGATTTTTTCCTTAAAAACCCTAAA-ACTAAACCCTAATCTAATTTTTTTAAAATTTAT
* *
8156917 AATTAATTTACTCAAATAACCCTACACCCTAA
65 AATTAATTTACTCAAATAAACCTAAACCCTAA
* * *
8156949 TTTATTTGATTTTTTCCTTAAAAATCCTAAACACTAAACCCTAATATAATTTTTTAAAAATTTAT
1 TTTATTTGATTTTTTCCTTAAAAACCCTAAA-ACTAAACCCTAATCTAATTTTTTTAAAATTTAT
*
8157014 AATTAATTTACTCAAGTAAACCTAAACCCTAA
65 AATTAATTTACTCAAATAAACCTAAACCCTAA
* * *
8157046 TTTATTTAATTTTTTCCTTAAAAACCATAAAATCTAAACTCTAATCTAA-TTTTTTAAAATTTAT
1 TTTATTTGATTTTTTCCTTAAAAACCCTAAAA-CTAAACCCTAATCTAATTTTTTTAAAATTTAT
* * * *
8157110 CATTAATTTAAT-TAAGAAACCTTAAACCCTAA
65 AATTAATTTACTCAAATAAACC-TAAACCCTAA
8157142 ACCCTTGTTT
Statistics
Matches: 171, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
95 6 0.04
96 44 0.26
97 121 0.71
ACGTcount: A:0.40, C:0.17, G:0.01, T:0.41
Consensus pattern (96 bp):
TTTATTTGATTTTTTCCTTAAAAACCCTAAAACTAAACCCTAATCTAATTTTTTTAAAATTTATA
ATTAATTTACTCAAATAAACCTAAACCCTAA
Found at i:8162804 original size:16 final size:16
Alignment explanation
Indices: 8162779--8162811 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
8162769 GGCGGACTTG
8162779 TAAACCTATTATTTGT
1 TAAACCTATTATTTGT
*
8162795 TAAACTTATTATTTGT
1 TAAACCTATTATTTGT
8162811 T
1 T
8162812 GAACGTAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.09, G:0.06, T:0.55
Consensus pattern (16 bp):
TAAACCTATTATTTGT
Found at i:8169492 original size:20 final size:21
Alignment explanation
Indices: 8169454--8169492 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
8169444 CAAAGTTTTA
* *
8169454 TTTTAAAAATCATTTTCAAAT
1 TTTTAAAAATAATTATCAAAT
8169475 TTTTAAAAA-AATTATCAA
1 TTTTAAAAATAATTATCAA
8169493 TTAGATTTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.44
Consensus pattern (21 bp):
TTTTAAAAATAATTATCAAAT
Found at i:8182347 original size:213 final size:213
Alignment explanation
Indices: 8181956--8183007 Score: 1070
Period size: 211 Copynumber: 5.0 Consensus size: 213
8181946 CTAATATAAT
* * *
8181956 ATGAGCATAATACTTACTTCATCGGAGGATGAATCTTCCTCACTACTAGACTCTGAACTACTATC
1 ATGAGCATAATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATC
* * * * * **
8182021 AGCTTTCACTGTCTTAGCAACTGGTATAGAGCCACTTTTAGCAACTACGGGTTTTTTCTTCTGAA
66 AGCTTTCACTGTCTTAGCAGCTGGAACAGAGCCACTTTTAGCAACTACAGGTTTTTTATTCTGTG
* * *
8182086 CAGAAGCTTCCTGGAATAAAACAGACA-ATTGAACATTAACAATCATGCAAAAGAATATTCCCAA
131 CAGGAGCTTCCTGGGATAAAACA-AAATATTGAACATTAACAATCATGCAAAAGAATATTCCCAA
8182150 CCATGCTAATATTATAAGC
195 CCATGCTAATATTATAAGC
* * * * *
8182169 ATGAGTATAATAGTCACTTCGTCAGAGGATGAACCCTCCTCACTACTAGACTCAGAACTACTATC
1 ATGAGCATAATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATC
* * ** *** *
8182234 AGCTTTCACAGTCTTAGCATCTGGAACAGATACACTTTTAGTGGCTACAGATTTTTTATTCTGTG
66 AGCTTTCACTGTCTTAGCAGCTGGAACAGAGCCACTTTTAGCAACTACAGGTTTTTTATTCTGTG
* * * *
8182299 CAGGAGCTTCCTGGGATAAGACAAAATATTGAACATCAACAATCATGCAAAAGAACACTCCCAAC
131 CAGGAGCTTCCTGGGATAAAACAAAATATTGAACATTAACAATCATGCAAAAGAATATTCCCAAC
* * *
8182364 CATACTCAA-AATATAACC
196 CATGCT-AATATTATAAGC
* * * *
8182382 AT--GCATATTACTCACTTCATCAGAGGATGAGTCTTCTTCGCTACTAGACTCAGAACTACTATC
1 ATGAGCATAATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATC
* * * * * * * *
8182445 AGCTTTAACAGCCTTAGCAGCCGGAATAGAGCCAGGTTTT-GCAGCTACAGGTTTTTTATTCTGA
66 AGCTTTCACTGTCTTAGCAGCTGGAACAGAGCCA-CTTTTAGCAACTACAGGTTTTTTATTCTGT
* * * * **
8182509 GCAGGAGCTTCCT--GA-AAAAAAAAACAATTGAACATTAACAATTATACAAAAGAA-GGT-CCA
130 GCAGGAGCTTCCTGGGATAAAACAAAA-TATTGAACATTAACAATCATGCAAAAGAATATTCCCA
** * *
8182569 ATTATGCGAACGTTTTA-ACTAGC
194 ACCATGCTAA--TATTATA--AGC
* * *
8182592 AAGAGCATAATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTTGA---AGAACTGCTATC
1 ATGAGCATAATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATC
* * ** * *
8182654 AGCTTTCAGTGTCTTGGCAGCTGGAACAGAGCCTTTTTTAGCAACTACAGGGTTTTTCTTCT-TA
66 AGCTTTCACTGTCTTAGCAGCTGGAACAGAGCCACTTTTAGCAACTACAGGTTTTTTATTCTGT-
* * **
8182718 GCAGGAGCTTCCT-GGATAAAACAAAATATTGAACATCAAAAATCATAG-AAAAGAATATAACCA
130 GCAGGAGCTTCCTGGGATAAAACAAAATATTGAACATTAACAATCAT-GCAAAAGAATATTCCCA
*
8182781 ACCATGCT-ATATTACAAGC
194 ACCATGCTAATATTATAAGC
* * *
8182800 ATGAGCATGATACTCACTTCGTCAGAGGATGAATCTTCCTCACTGCTAGACTCAGAACTACTATC
1 ATGAGCATAATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATC
* * * *
8182865 AGCTTTCACTGTCTTGGCAGCTGGAACAGGGCCATTTTTAGAAACTACAGGTTTTTTATTC--TG
66 AGCTTTCACTGTCTTAGCAGCTGGAACAGAGCCACTTTTAGCAACTACAGGTTTTTTATTCTGTG
* * * * *
8182928 -AGGAGCTTCCTGGAATATTAAA-AAAATATTTGAACATTAACGATCATAC-AAAGAATACATCT
131 CAGGAGCTTCCTGGGATA--AAACAAAATA-TTGAACATTAACAATCATGCAAAAGAATA-TTCC
**
8182990 TGACCATGCTAATATTAT
192 CAACCATGCTAATATTAT
8183008 GATGCCCCTA
Statistics
Matches: 685, Mismatches: 125, Indels: 59
0.79 0.14 0.07
Matches are distributed among these distances:
206 2 0.00
207 7 0.01
208 72 0.11
209 107 0.16
210 44 0.06
211 213 0.31
212 61 0.09
213 177 0.26
214 2 0.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (213 bp):
ATGAGCATAATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATC
AGCTTTCACTGTCTTAGCAGCTGGAACAGAGCCACTTTTAGCAACTACAGGTTTTTTATTCTGTG
CAGGAGCTTCCTGGGATAAAACAAAATATTGAACATTAACAATCATGCAAAAGAATATTCCCAAC
CATGCTAATATTATAAGC
Found at i:8182851 original size:420 final size:423
Alignment explanation
Indices: 8181956--8182984 Score: 1176
Period size: 420 Copynumber: 2.4 Consensus size: 423
8181946 CTAATATAAT
* * *
8181956 ATGAGCATAATACTTACTTCATCGGAGGATGAATCTTCCTCACTACTAGACTCTGAACTACTATC
1 ATGAGCAT-ATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATC
* * * * *
8182021 AGCTTTCACTGTCTTAGCAACTGGTATAGAGCCACTTTTAGCAACTACGGGTTTTTTCTTCTGAA
65 AGCTTTCACTGTCTTAGCAGCTGGAATAGAGCCACTTTTAGCAACTACAGGTTTTTTATTCTGAG
* * * * *
8182086 CAGAAGCTTCCTGGAATAAAACAGACAATTGAACATTAACAATCATGCAAAAGAATATTCCCAAC
130 CAGGAGCTTCCTGGAATAAAAAAAACAATTGAACATTAACAATCATACAAAAGAATAGTCCCAAC
* * * * *
8182151 CATGCTAATATTATAAGCATGAGTATAATAGTCACTTCGTCAGAGGATGAACCCTCCTCACTACT
195 CATGCGAATATTATAAGCAAGAGCATAATACTCACTTCATCAGAGGATGAACCCTCCTCACTACT
* * ***
8182216 AGACTCAGAACTACTATCAGCTTTCACAGTCTTAGCATCTGGAACAGATACACTTTTAGTGGCTA
260 AGA--CAGAACTACTATCAGCTTTCACAGTCTTAGCAGCTGGAACAGAGACACTTTTAGCAACTA
* * *
8182281 CAGATTTTTTATTCTGTGCAGGAGCTTCCTGGGATAAGACAAAATATTGAACATCAACAATCATG
323 CAGAGTTTTTATTCTGTGCAGGAGCTTCCTGGGATAAAACAAAATATTGAACATCAAAAATCATG
* *
8182346 CAAAAGAACACTCCCAACCATACTCAAAATATAACC
388 CAAAAGAACACTACCAACCATACTCAAAATACAACC
* * *
8182382 AT--GCATATTACTCACTTCATCAGAGGATGAGTCTTCTTCGCTACTAGACTCAGAACTACTATC
1 ATGAGCATA-TACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATC
* * * * * *
8182445 AGCTTTAACAGCCTTAGCAGCCGGAATAGAGCCAGGTTTT-GCAGCTACAGGTTTTTTATTCTGA
65 AGCTTTCACTGTCTTAGCAGCTGGAATAGAGCCA-CTTTTAGCAACTACAGGTTTTTTATTCTGA
* *
8182509 GCAGGAGCTTCCT-GAA-AAAAAAAACAATTGAACATTAACAATTATACAAAAGAA-GGT-CCAA
129 GCAGGAGCTTCCTGGAATAAAAAAAACAATTGAACATTAACAATCATACAAAAGAATAGTCCCAA
** * * *
8182570 TTATGCGAACGTTTTA-ACTAGCAAGAGCATAATACTCACTTCATCAGAGGATGAATCTTCCTCA
194 CCATGCGAA--TATTATA--AGCAAGAGCATAATACTCACTTCATCAGAGGATGAACCCTCCTCA
* * ** * * **
8182634 CTACTTGA-AGAACTGCTATCAGCTTTCAGTGTCTTGGCAGCTGGAACAGAGCCTTTTTTAGCAA
255 CTACTAGACAGAACTACTATCAGCTTTCACAGTCTTAGCAGCTGGAACAGAGACACTTTTAGCAA
* *
8182698 CTACAGGGTTTTTCTTCT-TAGCAGGAGCTTCCT-GGATAAAACAAAATATTGAACATCAAAAAT
320 CTACAGAGTTTTTATTCTGT-GCAGGAGCTTCCTGGGATAAAACAAAATATTGAACATCAAAAAT
* * * * *
8182761 CATAG-AAAAGAATA-TAACCAACCATGCT-ATATTACAAGC
384 CAT-GCAAAAGAACACT-ACCAACCATACTCAAAATACAACC
* *
8182800 ATGAGCATGATACTCACTTCGTCAGAGGATGAATCTTCCTCACTGCTAGACTCAGAACTACTATC
1 ATGAGCAT-ATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATC
* * * * *
8182865 AGCTTTCACTGTCTTGGCAGCTGGAACAGGGCCATTTTTAGAAACTACAGGTTTTTTATTCT--G
65 AGCTTTCACTGTCTTAGCAGCTGGAATAGAGCCACTTTTAGCAACTACAGGTTTTTTATTCTGAG
* * *
8182928 -AGGAGCTTCCTGGAATATTAAAAAAATATTTGAACATTAACGATCATAC-AAAGAATA
130 CAGGAGCTTCCTGGAATA--AAAAAAACAATTGAACATTAACAATCATACAAAAGAATA
8182985 CATCTTGACC
Statistics
Matches: 506, Mismatches: 79, Indels: 41
0.81 0.13 0.07
Matches are distributed among these distances:
417 11 0.02
418 14 0.03
419 55 0.11
420 190 0.38
421 29 0.06
422 38 0.08
423 50 0.10
424 113 0.22
425 4 0.01
426 2 0.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.28
Consensus pattern (423 bp):
ATGAGCATATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATCA
GCTTTCACTGTCTTAGCAGCTGGAATAGAGCCACTTTTAGCAACTACAGGTTTTTTATTCTGAGC
AGGAGCTTCCTGGAATAAAAAAAACAATTGAACATTAACAATCATACAAAAGAATAGTCCCAACC
ATGCGAATATTATAAGCAAGAGCATAATACTCACTTCATCAGAGGATGAACCCTCCTCACTACTA
GACAGAACTACTATCAGCTTTCACAGTCTTAGCAGCTGGAACAGAGACACTTTTAGCAACTACAG
AGTTTTTATTCTGTGCAGGAGCTTCCTGGGATAAAACAAAATATTGAACATCAAAAATCATGCAA
AAGAACACTACCAACCATACTCAAAATACAACC
Found at i:8188815 original size:34 final size:34
Alignment explanation
Indices: 8188744--8188817 Score: 87
Period size: 34 Copynumber: 2.2 Consensus size: 34
8188734 AAAGCAAGTA
* ** * *
8188744 ATCAGTAGGGCCTTTGCCCAATTTCAGTAATATT
1 ATCAGTAGGGCCTTAGCCCAATAACAGAAACATT
8188778 ATCAGTAGGGCCTTAGCCC-ATAACAGAAACATAT
1 ATCAGTAGGGCCTTAGCCCAATAACAGAAACAT-T
8188812 ATCAGT
1 ATCAGT
8188818 CATGCAGTGA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
33 9 0.26
34 25 0.74
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (34 bp):
ATCAGTAGGGCCTTAGCCCAATAACAGAAACATT
Found at i:8189525 original size:108 final size:107
Alignment explanation
Indices: 8189307--8189602 Score: 328
Period size: 108 Copynumber: 2.7 Consensus size: 107
8189297 GGTTTCAATC
* * * * * * *
8189307 ATTTTAACCTATGGAAGTATTTCGATCATTCTACCCTATGGGGGTATTTTAGTCATTTTATCCTA
1 ATTTTACCCTATAGAGGTATTTCGGTCATTCTA-CCTATGGGGGTATTTCAGTAATTTTACCCTA
* * * * *
8189372 TGGGGGTATTTCGATCATTTTACCCTATGGGGGTATTTTAGTT
65 TGAGGGTATTTTGGTCATTCTACCCTATGGGGGTATTTGAGTT
* * *
8189415 ATTTTACCCTATA-AGGGTATTTCGGTCATTTTACCTTATGAGGGTATTTCAGTTATTTTACCCT
1 ATTTTACCCTATAGA-GGTATTTCGGTCATTCTACC-TATGGGGGTATTTCAGTAATTTTACCCT
*
8189479 ATGAGGGTATTTTGGTCATTCTATCCTATGGGGGTATTTCGA-TT
64 ATGAGGGTATTTTGGTCATTCTACCCTATGGGGGTATTT-GAGTT
** * *
8189523 ATTTTATTCTATGGAGGTATTTCGGCCATTCTATCCTATGGGGGTATTTC-GATAATTTTACCCT
1 ATTTTACCCTATAGAGGTATTTCGGTCATTCTA-CCTATGGGGGTATTTCAG-TAATTTTACCCT
*
8189587 ATGAAGGTATTTTGGT
64 ATGAGGGTATTTTGGT
8189603 TATAACAGTG
Statistics
Matches: 159, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
107 4 0.03
108 151 0.95
109 4 0.03
ACGTcount: A:0.21, C:0.15, G:0.21, T:0.44
Consensus pattern (107 bp):
ATTTTACCCTATAGAGGTATTTCGGTCATTCTACCTATGGGGGTATTTCAGTAATTTTACCCTAT
GAGGGTATTTTGGTCATTCTACCCTATGGGGGTATTTGAGTT
Found at i:8189534 original size:27 final size:27
Alignment explanation
Indices: 8189280--8189598 Score: 288
Period size: 27 Copynumber: 11.9 Consensus size: 27
8189270 GGTATAAAAG
* *
8189280 TCATTTTACCCTATGAGGG--TTTCAA
1 TCATTTTACCCTATGGGGGTATTTCGA
* **
8189305 TCATTTTAACCTATGGAAGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGA
* *
8189332 TCATTCTACCCTATGGGGGTATTT-TA
1 TCATTTTACCCTATGGGGGTATTTCGA
*
8189358 GTCATTTTATCCTATGGGGGTATTTCGA
1 -TCATTTTACCCTATGGGGGTATTTCGA
*
8189386 TCATTTTACCCTATGGGGGTATTT-TA
1 TCATTTTACCCTATGGGGGTATTTCGA
* ** *
8189412 GTTATTTTACCCTATAAGGGTATTTCGG
1 -TCATTTTACCCTATGGGGGTATTTCGA
* *
8189440 TCATTTTACCTTATGAGGGTATTTC-A
1 TCATTTTACCCTATGGGGGTATTTCGA
* * * *
8189466 GTTATTTTACCCTATGAGGGTATTTTGG
1 -TCATTTTACCCTATGGGGGTATTTCGA
* *
8189494 TCATTCTATCCTATGGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGA
* ** * *
8189521 TTATTTTATTCTATGGAGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGA
* * *
8189548 CCATTCTATCCTATGGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGA
* **
8189575 TAATTTTACCCTATGAAGGTATTT
1 TCATTTTACCCTATGGGGGTATTT
8189599 TGGTTATAAC
Statistics
Matches: 235, Mismatches: 51, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
25 15 0.06
26 2 0.01
27 217 0.92
28 1 0.00
ACGTcount: A:0.21, C:0.15, G:0.20, T:0.44
Consensus pattern (27 bp):
TCATTTTACCCTATGGGGGTATTTCGA
Found at i:8193131 original size:28 final size:30
Alignment explanation
Indices: 8193095--8193152 Score: 75
Period size: 28 Copynumber: 2.0 Consensus size: 30
8193085 CATCGTTTAA
* *
8193095 TGTGCAATTGTATACATG-AA-TTTGATTT
1 TGTGAAATTGTATACAAGAAATTTTGATTT
*
8193123 TGTGAAATTTTATACAAGAAATTTTGATTT
1 TGTGAAATTGTATACAAGAAATTTTGATTT
8193153 GATTCAATTC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 15 0.60
29 2 0.08
30 8 0.32
ACGTcount: A:0.33, C:0.05, G:0.16, T:0.47
Consensus pattern (30 bp):
TGTGAAATTGTATACAAGAAATTTTGATTT
Found at i:8194027 original size:22 final size:22
Alignment explanation
Indices: 8193998--8194041 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
8193988 ACCAAATTTA
*
8193998 ATATTACAATTTATAT-ATATT
1 ATATTACAATTTAAATAATATT
8194019 ATATATACAATTTAAATAATATT
1 ATAT-TACAATTTAAATAATATT
8194042 TTAATAACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 4 0.20
22 11 0.55
23 5 0.25
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (22 bp):
ATATTACAATTTAAATAATATT
Found at i:8199846 original size:11 final size:11
Alignment explanation
Indices: 8199810--8199852 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
8199800 ATTTTTAAAA
*
8199810 TTTTAAAATAT
1 TTTTAAAATTT
*
8199821 TTTAAAAATACTT
1 TTTTAAAAT--TT
8199834 TTTTAAAATTT
1 TTTTAAAATTT
8199845 TTTTAAAA
1 TTTTAAAA
8199853 AATTGGTGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
11 18 0.67
13 9 0.33
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (11 bp):
TTTTAAAATTT
Found at i:8203569 original size:43 final size:43
Alignment explanation
Indices: 8203454--8203569 Score: 121
Period size: 43 Copynumber: 2.7 Consensus size: 43
8203444 TGTGTTTTCG
* * * * * *
8203454 TGTAAGACCACGTCTGGGACGTTGGCATCGATTTGTGTTTACG
1 TGTAAGACCACGTCTGGGATGTTGGCATTGATCTGAGATTACA
*
8203497 TGTAAGACC-CTGTCT-GGAT-TAGCGACATTGATCTGAGATTACA
1 TGTAAGACCAC-GTCTGGGATGTTG-G-CATTGATCTGAGATTACA
8203540 TGTAAGACCACGTCTGGGATGTTGGCATTG
1 TGTAAGACCACGTCTGGGATGTTGGCATTG
8203570 TACGAGCTTT
Statistics
Matches: 59, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
41 2 0.03
42 5 0.08
43 44 0.75
44 6 0.10
45 2 0.03
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGATGTTGGCATTGATCTGAGATTACA
Found at i:8210617 original size:41 final size:41
Alignment explanation
Indices: 8210560--8210714 Score: 274
Period size: 41 Copynumber: 3.8 Consensus size: 41
8210550 CCTTTTAGGG
*
8210560 CTTTAGCGGTGTTTTTGAAAAAGCGCCGCTAATGCTCGGGT
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGT
* *
8210601 CTTTAGCAGCGTTTTTGAAAAGGCGCCGCTAATGCTCGGGT
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGT
*
8210642 CTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCGGGT
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGT
8210683 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAA
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAA
8210715 AAACATTTTA
Statistics
Matches: 107, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 107 1.00
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (41 bp):
CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGT
Found at i:8211002 original size:7 final size:7
Alignment explanation
Indices: 8210992--8211024 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
8210982 TATAGTTTAG
8210992 GGTTTTT
1 GGTTTTT
8210999 GGTTTTT
1 GGTTTTT
8211006 GGTTTTT
1 GGTTTTT
8211013 GGTTTTT
1 GGTTTTT
8211020 GGTTT
1 GGTTT
8211025 AGGGGTATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.30, T:0.70
Consensus pattern (7 bp):
GGTTTTT
Found at i:8211103 original size:15 final size:15
Alignment explanation
Indices: 8211083--8211133 Score: 70
Period size: 14 Copynumber: 3.5 Consensus size: 15
8211073 TTTTAAGGTA
*
8211083 TAGGGAGTATGGATT
1 TAGGGATTATGGATT
8211098 TAGGGATTATGGA-T
1 TAGGGATTATGGATT
8211112 TAGGGATTATGG-TT
1 TAGGGATTATGGATT
*
8211126 TAAGGATT
1 TAGGGATT
8211134 GGGATTTAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
14 21 0.64
15 12 0.36
ACGTcount: A:0.27, C:0.00, G:0.35, T:0.37
Consensus pattern (15 bp):
TAGGGATTATGGATT
Found at i:8211133 original size:21 final size:21
Alignment explanation
Indices: 8211093--8211148 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
8211083 TAGGGAGTAT
* * *
8211093 GGATTTAGGGATTATGGATTAG
1 GGATTTAAGGTTTAAGGATT-G
*
8211115 GGA-TTATGGTTTAAGGATTG
1 GGATTTAAGGTTTAAGGATTG
8211135 GGATTTAAGGTTTA
1 GGATTTAAGGTTTA
8211149 TGAGTTAGGG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
20 4 0.14
21 22 0.76
22 3 0.10
ACGTcount: A:0.27, C:0.00, G:0.34, T:0.39
Consensus pattern (21 bp):
GGATTTAAGGTTTAAGGATTG
Found at i:8211440 original size:14 final size:14
Alignment explanation
Indices: 8211420--8211492 Score: 60
Period size: 14 Copynumber: 5.1 Consensus size: 14
8211410 ACAGATTATA
8211420 GTTTAAGGGTT-GG
1 GTTTAAGGGTTAGG
*
8211433 GATTTAAGGTTTAGG
1 G-TTTAAGGGTTAGG
8211448 GTTTAAGGGTTTAGG
1 GTTTAAGGG-TTAGG
* *
8211463 GGTTAAGAGTTATGG
1 GTTTAAGGGTTA-GG
*
8211478 ATTT-AGGGTTTAGG
1 GTTTAAGGG-TTAGG
8211492 G
1 G
8211493 ATTCAGGGGT
Statistics
Matches: 47, Mismatches: 8, Indels: 9
0.73 0.12 0.14
Matches are distributed among these distances:
13 1 0.02
14 24 0.51
15 22 0.47
ACGTcount: A:0.22, C:0.00, G:0.40, T:0.38
Consensus pattern (14 bp):
GTTTAAGGGTTAGG
Found at i:8211500 original size:15 final size:15
Alignment explanation
Indices: 8211422--8211500 Score: 67
Period size: 15 Copynumber: 5.5 Consensus size: 15
8211412 AGATTATAGT
8211422 TTAAGGG-TT-GGGA
1 TTAAGGGTTTAGGGA
*
8211435 TTTAA-GGTTTAGGGT
1 -TTAAGGGTTTAGGGA
*
8211450 TTAAGGGTTTAGGGG
1 TTAAGGGTTTAGGGA
* *
8211465 TTAAGAG-TTATGGA
1 TTAAGGGTTTAGGGA
*
8211479 TTTAGGGTTTAGGGA
1 TTAAGGGTTTAGGGA
*
8211494 TTCAGGG
1 TTAAGGG
8211501 GTCGAGTTAG
Statistics
Matches: 52, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
13 2 0.04
14 20 0.38
15 30 0.58
ACGTcount: A:0.23, C:0.01, G:0.39, T:0.37
Consensus pattern (15 bp):
TTAAGGGTTTAGGGA
Found at i:8211810 original size:50 final size:50
Alignment explanation
Indices: 8211749--8211921 Score: 247
Period size: 50 Copynumber: 3.3 Consensus size: 50
8211739 AAATCATTTG
8211749 ATATATTTAAATATTAATTTAAATAGAATTAATAAATAAGTTAAAATAAA
1 ATATATTTAAATATTAATTTAAATAGAATTAATAAATAAGTTAAAATAAA
* *
8211799 ATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAAGAAAATA
1 ATATATTTAAATATTAATTTAAATAGAATTAATAAATAAG-TTAAA-ATAA-A
*
8211852 TATTTAAATATTTAAATATTAATTTAAATAGAATTAATAAATAAGTTTAAATAAA
1 -A--T--ATATTTAAATATTAATTTAAATAGAATTAATAAATAAGTTAAAATAAA
8211907 ATATATTTAAATATT
1 ATATATTTAAATATT
8211922 TAAATATTAG
Statistics
Matches: 110, Mismatches: 5, Indels: 16
0.84 0.04 0.12
Matches are distributed among these distances:
50 52 0.47
51 5 0.05
52 4 0.04
53 1 0.01
54 2 0.02
55 1 0.01
56 4 0.04
57 4 0.04
58 37 0.34
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (50 bp):
ATATATTTAAATATTAATTTAAATAGAATTAATAAATAAGTTAAAATAAA
Found at i:8211840 original size:23 final size:23
Alignment explanation
Indices: 8211766--8211844 Score: 95
Period size: 23 Copynumber: 3.3 Consensus size: 23
8211756 TAAATATTAA
8211766 TTTAAATAGAATTAATAAATAAG
1 TTTAAATAGAATTAATAAATAAG
* * *
8211789 TTAAAATAAAATATATTTAAATATTAG
1 TTTAAATAGAAT-TA-ATAAATA--AG
8211816 TTTAAATAGAATTAATAAATAAG
1 TTTAAATAGAATTAATAAATAAG
8211839 TTTAAA
1 TTTAAA
8211845 GAAAATATAT
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
23 18 0.39
24 2 0.04
25 12 0.26
26 2 0.04
27 12 0.26
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (23 bp):
TTTAAATAGAATTAATAAATAAG
Found at i:8211934 original size:35 final size:36
Alignment explanation
Indices: 8211895--8211983 Score: 121
Period size: 35 Copynumber: 2.6 Consensus size: 36
8211885 TTAATAAATA
8211895 AGTTTAAATAAAATATATTTAA-ATATTTAAATATT
1 AGTTTAAATAAAATATATTTAATATATTTAAATATT
* * *
8211930 AGTTTAAATAGAAT-TAATAAATATATTTAAATATT
1 AGTTTAAATAAAATATATTTAATATATTTAAATATT
*
8211965 AATTTAAATAAAATA-ATTT
1 AGTTTAAATAAAATATATTT
8211984 TTGTTCAAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
34 5 0.11
35 40 0.89
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (36 bp):
AGTTTAAATAAAATATATTTAATATATTTAAATATT
Found at i:8211961 original size:58 final size:58
Alignment explanation
Indices: 8211801--8211962 Score: 290
Period size: 58 Copynumber: 2.8 Consensus size: 58
8211791 AAAATAAAAT
*
8211801 ATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAAGAAAATATATTTAA
1 ATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAAATATATTTAA
*
8211859 ATATTTAAATATTAATTTAAATAGAATTAATAAATAAGTTTAAATAAAATATATTTAA
1 ATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAAATATATTTAA
8211917 ATATTTAAATATTAGTTTAAATAGAATTAATAAATATA-TTTAAATA
1 ATATTTAAATATTAGTTTAAATAGAATTAATAAATA-AGTTTAAATA
8211963 TTAATTTAAA
Statistics
Matches: 100, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
58 99 0.99
59 1 0.01
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (58 bp):
ATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAATAAAATATATTTAA
Found at i:8212124 original size:118 final size:119
Alignment explanation
Indices: 8211996--8212236 Score: 337
Period size: 118 Copynumber: 2.0 Consensus size: 119
8211986 GTTCAAAAGG
* * *
8211996 AAATGATTTTTTTGCGGCGTTTTTATGAAA-AATACCGCAAAAGGCAAGCAATAGC-AGCGTTTT
1 AAATGATTTTTTTGCGGCGTTTTTA-CAAATAATACCACAAAAGACAAGCAATAGCGA-CGTTTT
* *
8212059 TATAAAAAAATGCCAC-AAAATTATTTGACTTTAAAAAATGGTGCCATTTTACCC-A
64 TATAAAAAAAT-CCACAAAAATCATTTGACTTTAAAAAATGGCGCCATTTTACCCTA
* * * *
8212114 AAATGATTTTTTTGTGGCGTTTTTACAAATACTGCCACAAAAGATAAGCAATAGCGACGTTTTTA
1 AAATGATTTTTTTGCGGCGTTTTTACAAATAATACCACAAAAGACAAGCAATAGCGACGTTTTTA
*
8212179 TAAAAAACTCCACAAAAATCATTTGACTTTAAAAAATGGCGCCATTTTACCCTA
66 TAAAAAAATCCACAAAAATCATTTGACTTTAAAAAATGGCGCCATTTTACCCTA
8212233 AAAT
1 AAAT
8212237 TTCCCCCCTG
Statistics
Matches: 109, Mismatches: 10, Indels: 7
0.87 0.08 0.06
Matches are distributed among these distances:
117 7 0.06
118 96 0.88
119 6 0.06
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.32
Consensus pattern (119 bp):
AAATGATTTTTTTGCGGCGTTTTTACAAATAATACCACAAAAGACAAGCAATAGCGACGTTTTTA
TAAAAAAATCCACAAAAATCATTTGACTTTAAAAAATGGCGCCATTTTACCCTA
Found at i:8214432 original size:27 final size:27
Alignment explanation
Indices: 8214337--8214432 Score: 72
Period size: 27 Copynumber: 3.5 Consensus size: 27
8214327 TACTTGTATT
* *
8214337 TAAAATAATAAAACT-TAAAAAAAGTT-
1 TAAAATAATAAAAATATATAAAAA-TTA
* * **
8214363 TAAAACAAATTAAAAATACATAAATTTTA
1 TAAAA-TAA-TAAAAATATATAAAAATTA
*
8214392 TAAAAGAA-ATAAAATATATAAAAATTA
1 TAAAATAATA-AAAATATATAAAAATTA
8214419 TAAAATAATAAAAA
1 TAAAATAATAAAAA
8214433 ACTTGAAAGT
Statistics
Matches: 53, Mismatches: 11, Indels: 11
0.71 0.15 0.15
Matches are distributed among these distances:
26 6 0.11
27 27 0.51
28 11 0.21
29 9 0.17
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.27
Consensus pattern (27 bp):
TAAAATAATAAAAATATATAAAAATTA
Found at i:8216475 original size:42 final size:42
Alignment explanation
Indices: 8216415--8216547 Score: 151
Period size: 42 Copynumber: 3.1 Consensus size: 42
8216405 TAATTATTTT
* * *
8216415 TAAAGATTATGTT-TTTAGCGGCGTTTTTGCTATAAGCGCCGC
1 TAAAGGTT-TGTTCTTTAGCGGCGTTTGTGCTAAAAGCGCCGC
*
8216457 TAAAGGTTTGTTCTTTAGCGGCGTTTGTGGTAAAAGCGCCGC
1 TAAAGGTTTGTTCTTTAGCGGCGTTTGTGCTAAAAGCGCCGC
* * * **
8216499 TAAAGGTCTTGGTCTTTAACGGCGTTTGTTTCTAAAAATGCCGC
1 TAAAGGT-TTGTTCTTTAGCGGCGTTTG-TGCTAAAAGCGCCGC
8216543 TAAAG
1 TAAAG
8216548 TTAGCGACGC
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
41 4 0.05
42 40 0.51
43 18 0.23
44 16 0.21
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.35
Consensus pattern (42 bp):
TAAAGGTTTGTTCTTTAGCGGCGTTTGTGCTAAAAGCGCCGC
Found at i:8216955 original size:19 final size:19
Alignment explanation
Indices: 8216931--8217006 Score: 64
Period size: 19 Copynumber: 3.7 Consensus size: 19
8216921 TTTACATGAT
8216931 TTAATTATAAATATAAAAA
1 TTAATTATAAATATAAAAA
8216950 TTAATTATAAAGTATATTATTAAA
1 TTAATTATAAA-TATA--A--AAA
* *
8216974 TTAATTAT-ATTATAAATA
1 TTAATTATAAATATAAAAA
8216992 TTATATTAATAAATA
1 TTA-ATT-ATAAATA
8217007 AATTAAATAA
Statistics
Matches: 46, Mismatches: 3, Indels: 14
0.73 0.05 0.22
Matches are distributed among these distances:
18 5 0.11
19 14 0.30
20 7 0.15
21 3 0.07
22 5 0.11
23 1 0.02
24 11 0.24
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (19 bp):
TTAATTATAAATATAAAAA
Found at i:8216973 original size:26 final size:25
Alignment explanation
Indices: 8216944--8217011 Score: 66
Period size: 28 Copynumber: 2.5 Consensus size: 25
8216934 ATTATAAATA
8216944 TAAAAATTAATTATAAAGTA-TATTAT
1 TAAAAATTAATTATAAA-TATTA-TAT
8216970 TAAATTAATTATATTATAAATATTATAT
1 TAAA--AATTA-ATTATAAATATTATAT
*
8216998 TAATAAATAAATTA
1 TAA-AAATTAATTA
8217012 AATAAAGACA
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
26 8 0.22
27 4 0.11
28 13 0.36
29 11 0.31
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.44
Consensus pattern (25 bp):
TAAAAATTAATTATAAATATTATAT
Found at i:8217043 original size:12 final size:12
Alignment explanation
Indices: 8217026--8217050 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8217016 AAGACAAATG
8217026 TATGGTGATGAT
1 TATGGTGATGAT
8217038 TATGGTGATGAT
1 TATGGTGATGAT
8217050 T
1 T
8217051 TGATACAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (12 bp):
TATGGTGATGAT
Found at i:8217355 original size:9 final size:9
Alignment explanation
Indices: 8217333--8217372 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
8217323 GAAACAGGGA
8217333 GAAAGGAAAG
1 GAAA-GAAAG
*
8217343 GAAAGAAAT
1 GAAAGAAAG
8217352 GAAAGAAA-
1 GAAAGAAAG
8217360 GAAAGAAAG
1 GAAAGAAAG
8217369 GAAA
1 GAAA
8217373 AACTAGAGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
8 8 0.29
9 16 0.57
10 4 0.14
ACGTcount: A:0.68, C:0.00, G:0.30, T:0.03
Consensus pattern (9 bp):
GAAAGAAAG
Found at i:8217764 original size:17 final size:18
Alignment explanation
Indices: 8217742--8217775 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
8217732 TAAATGAGTT
8217742 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
8217759 AATTAGGGTATAAATTG
1 AATTAGGATATAAATTG
8217776 AAAAGAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.24, T:0.35
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:8219134 original size:26 final size:26
Alignment explanation
Indices: 8219104--8219155 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
8219094 AATGGTTGTG
*
8219104 GTTTGAAATTGCAGGGAAGGTTAGAT
1 GTTTGAAATTGCAGGAAAGGTTAGAT
8219130 GTTTGAAATTGCAGGAAAGGTTAGAT
1 GTTTGAAATTGCAGGAAAGGTTAGAT
8219156 AATTATAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.04, G:0.33, T:0.31
Consensus pattern (26 bp):
GTTTGAAATTGCAGGAAAGGTTAGAT
Found at i:8223457 original size:2 final size:2
Alignment explanation
Indices: 8223450--8223491 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
8223440 TAAATTAAGC
8223450 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8223492 GAGAGCAATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8226162 original size:17 final size:17
Alignment explanation
Indices: 8226125--8226159 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
8226115 CAAAATAAAT
*
8226125 ATTATTTATTAAATTAA
1 ATTAATTATTAAATTAA
8226142 ATTAATTATATAAATTAA
1 ATTAATTAT-TAAATTAA
8226160 TTATTCCAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTAATTATTAAATTAA
Found at i:8226172 original size:13 final size:13
Alignment explanation
Indices: 8226139--8226163 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8226129 TTTATTAAAT
8226139 TAAATTAATTATA
1 TAAATTAATTATA
8226152 TAAATTAATTAT
1 TAAATTAATTAT
8226164 TCCAATTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TAAATTAATTATA
Found at i:8228120 original size:22 final size:22
Alignment explanation
Indices: 8228095--8228166 Score: 58
Period size: 22 Copynumber: 3.3 Consensus size: 22
8228085 AGTACTTTGG
8228095 TGCTCTTTGTTCAACACTTCGA
1 TGCTCTTTGTTCAACACTTCGA
* * *
8228117 TGCTCTCTGCTT-ATCACTTTTG-
1 TGCTCTTTG-TTCAACAC-TTCGA
* * *
8228139 TGCTCTTTGATCAGCATTTCGA
1 TGCTCTTTGTTCAACACTTCGA
8228161 TGCTCT
1 TGCTCT
8228167 CTTCTTAGCA
Statistics
Matches: 38, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
21 4 0.11
22 29 0.76
23 5 0.13
ACGTcount: A:0.14, C:0.26, G:0.15, T:0.44
Consensus pattern (22 bp):
TGCTCTTTGTTCAACACTTCGA
Found at i:8228144 original size:44 final size:44
Alignment explanation
Indices: 8228081--8228212 Score: 138
Period size: 44 Copynumber: 3.0 Consensus size: 44
8228071 GTGTGTACGA
* *
8228081 GCTTAGTACTTTGGTGCTCTTTGTTCAACACTTCGATGCTCTCT
1 GCTTAGCACTTTAGTGCTCTTTGTTCAACACTTCGATGCTCTCT
* * * * *
8228125 GCTTATCACTTTTGTGCTCTTTGATCAGCATTTCGATGCTCTCT
1 GCTTAGCACTTTAGTGCTCTTTGTTCAACACTTCGATGCTCTCT
* * * * * * *
8228169 TCTTAGCACTTCAGTGCTTTTTATTTATCACTACGATGCTCTCT
1 GCTTAGCACTTTAGTGCTCTTTGTTCAACACTTCGATGCTCTCT
8228213 AGTGTGGTGT
Statistics
Matches: 71, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
44 71 1.00
ACGTcount: A:0.15, C:0.25, G:0.15, T:0.45
Consensus pattern (44 bp):
GCTTAGCACTTTAGTGCTCTTTGTTCAACACTTCGATGCTCTCT
Found at i:8228176 original size:22 final size:23
Alignment explanation
Indices: 8228112--8228179 Score: 61
Period size: 22 Copynumber: 3.0 Consensus size: 23
8228102 TGTTCAACAC
* *
8228112 TTCGATGCTCTCTGCTTATCACT
1 TTCGATGCTCTCTTCTTAGCACT
* * *
8228135 TTTG-TGCTCT-TTGATCAGCA-T
1 TTCGATGCTCTCTT-CTTAGCACT
8228156 TTCGATGCTCTCTTCTTAGCACT
1 TTCGATGCTCTCTTCTTAGCACT
8228179 T
1 T
8228180 CAGTGCTTTT
Statistics
Matches: 33, Mismatches: 8, Indels: 8
0.67 0.16 0.16
Matches are distributed among these distances:
21 5 0.15
22 21 0.64
23 7 0.21
ACGTcount: A:0.13, C:0.26, G:0.15, T:0.46
Consensus pattern (23 bp):
TTCGATGCTCTCTTCTTAGCACT
Found at i:8229860 original size:20 final size:20
Alignment explanation
Indices: 8229831--8229877 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
8229821 ATATATCTTG
8229831 AATT-ATTTGATTCTAATCA
1 AATTGATTTGATTCTAATCA
* *
8229850 ATTTGATTTGATTTTAATCA
1 AATTGATTTGATTCTAATCA
8229870 AATTGATT
1 AATTGATT
8229878 CAATTGCCCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 3 0.12
20 21 0.88
ACGTcount: A:0.34, C:0.06, G:0.09, T:0.51
Consensus pattern (20 bp):
AATTGATTTGATTCTAATCA
Found at i:8230539 original size:40 final size:41
Alignment explanation
Indices: 8230451--8230553 Score: 106
Period size: 40 Copynumber: 2.6 Consensus size: 41
8230441 GTTTGGATAA
* **
8230451 AAAACGCCGCT-AAAGATCGAGCATTAGCGGCGCTTTTTGG
1 AAAACGCCGCTAAAAGATCAAGCATTAGCGGCGCTTTTCAG
*
8230491 AAAACGCCGCTAAAAGAT-AAGCATTAGCGGTG-TTTTCCAG
1 AAAACGCCGCTAAAAGATCAAGCATTAGCGGCGCTTTT-CAG
* *
8230531 AAAGCGCCGC-AAAAAATCTAAGC
1 AAAACGCCGCTAAAAGATC-AAGC
8230554 CCAACGACGC
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
39 10 0.19
40 33 0.62
41 10 0.19
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.19
Consensus pattern (41 bp):
AAAACGCCGCTAAAAGATCAAGCATTAGCGGCGCTTTTCAG
Done.