Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60343961
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 596159 characters in sequence are not A, C, G, or T
File 31 of 204
Found at i:8688895 original size:3 final size:3
Alignment explanation
Indices: 8688887--8688924 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
8688877 AATCCACAAT
8688887 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
8688925 TTAATTGGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.32, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:8691546 original size:31 final size:32
Alignment explanation
Indices: 8691511--8691577 Score: 93
Period size: 32 Copynumber: 2.1 Consensus size: 32
8691501 TTACAATTTG
8691511 GTCAC-TGAACTATTCGA-AAGTTTTCATTTAA
1 GTCACTTGAACTATTC-ACAAGTTTTCATTTAA
* *
8691542 GTCACTTTAACTATTCACAAGTTTTTATTTAA
1 GTCACTTGAACTATTCACAAGTTTTCATTTAA
8691574 GTCA
1 GTCA
8691578 TTAGATTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
31 6 0.19
32 26 0.81
ACGTcount: A:0.31, C:0.16, G:0.10, T:0.42
Consensus pattern (32 bp):
GTCACTTGAACTATTCACAAGTTTTCATTTAA
Found at i:8696260 original size:20 final size:20
Alignment explanation
Indices: 8696214--8696252 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
8696204 CACTAAGGAG
8696214 GGGTGAGCTACACGAGCTCT
1 GGGTGAGCTACACGAGCTCT
8696234 GGGTGAGCTACACGAGCTC
1 GGGTGAGCTACACGAGCTC
8696253 GGCGTGAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.21, C:0.26, G:0.36, T:0.18
Consensus pattern (20 bp):
GGGTGAGCTACACGAGCTCT
Found at i:8699762 original size:101 final size:102
Alignment explanation
Indices: 8699636--8699820 Score: 257
Period size: 101 Copynumber: 1.8 Consensus size: 102
8699626 AAAGTGATGG
* * * *
8699636 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAT-A-GGTCGCATGTGTAGT
1 TCACATGTGTAGTACAATGTGCAGGCTACTACATGTACC-GAATGATAATGGCCACATGTGTAGT
* *
8699699 ACTATGTGCAGGCTACTATGCATACCGAATAGTTTCGA
65 ACTATGTACAAGCTACTATGCATACCGAATAGTTTCGA
* * * *
8699737 TCACGTGTGTAGTACAATGTGCAGGCTACTACATGTATCGTATGGTAATGGCCACATGTGTAGTA
1 TCACATGTGTAGTACAATGTGCAGGCTACTACATGTACCGAATGATAATGGCCACATGTGTAGTA
8699802 CTATGTACAAGCTACTATG
66 CTATGTACAAGCTACTATG
8699821 TGAACCGAAC
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
100 5 0.07
101 36 0.50
102 31 0.43
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (102 bp):
TCACATGTGTAGTACAATGTGCAGGCTACTACATGTACCGAATGATAATGGCCACATGTGTAGTA
CTATGTACAAGCTACTATGCATACCGAATAGTTTCGA
Found at i:8699797 original size:51 final size:50
Alignment explanation
Indices: 8699632--8699818 Score: 191
Period size: 51 Copynumber: 3.7 Consensus size: 50
8699622 AGTGAAAGTG
* *
8699632 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACATGTACC-GAATGGT
* *
8699683 A-GGTCGCATGTGTAGTACTATGTGCAGGCTACT--ATGCATACCGAATAGT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACATG--TACCGAATGGT
* * * * * *
8699732 TTCGATCACGTGTGTAGTACAATGTGCAGGCTACTACATGTATCGTATGGT
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACATGTACCGAATGGT
* * *
8699783 AATGGCCACATGTGTAGTACTATGTACAAGCTACTA
1 -ATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
8699819 TGTGAACCGA
Statistics
Matches: 110, Mismatches: 19, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
48 2 0.02
49 5 0.05
50 35 0.32
51 64 0.58
52 1 0.01
53 3 0.03
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACATGTACCGAATGGT
Found at i:8699880 original size:45 final size:45
Alignment explanation
Indices: 8699824--8699918 Score: 163
Period size: 45 Copynumber: 2.1 Consensus size: 45
8699814 TACTATGTGA
* *
8699824 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
*
8699869 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
8699914 ACCGA
1 ACCGA
8699919 GTATCTGTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
Found at i:8703791 original size:22 final size:21
Alignment explanation
Indices: 8703766--8703816 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
8703756 GGCACACACT
*
8703766 CGTGTGAAATGAGGCACATGGC
1 CGTGTGAAATAAGG-ACATGGC
**
8703788 CGTGTGACCTAAGGACATGGC
1 CGTGTGAAATAAGGACATGGC
*
8703809 TGTGTGAA
1 CGTGTGAA
8703817 CAAGCCGTGT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 13 0.54
22 11 0.46
ACGTcount: A:0.25, C:0.18, G:0.35, T:0.22
Consensus pattern (21 bp):
CGTGTGAAATAAGGACATGGC
Found at i:8705461 original size:28 final size:28
Alignment explanation
Indices: 8705402--8705462 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
8705392 GTTTAAAAAT
* *
8705402 ATATATTATATAAAAAATATGCATATAT
1 ATATACTATATAAAAAATATGCATATAA
* *
8705430 ATATACTATA-AAAAAATTGTGTATATAA
1 ATATACTATATAAAAAA-TATGCATATAA
8705458 ATATA
1 ATATA
8705463 AAAATGATAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 6 0.21
28 22 0.79
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (28 bp):
ATATACTATATAAAAAATATGCATATAA
Found at i:8705477 original size:3 final size:3
Alignment explanation
Indices: 8705469--8705527 Score: 55
Period size: 3 Copynumber: 19.7 Consensus size: 3
8705459 TATAAAAATG
* * * * *
8705469 ATA ATA ATA TTA ACA AGA ATA ATA ATA TTA ATA ATA ATA ACA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
8705517 AAA AAA ATA AT
1 ATA ATA ATA AT
8705528 GGTATAACAT
Statistics
Matches: 45, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:8705490 original size:18 final size:18
Alignment explanation
Indices: 8705469--8705527 Score: 64
Period size: 18 Copynumber: 3.3 Consensus size: 18
8705459 TATAAAAATG
* *
8705469 ATAATAATATTAACAAGA
1 ATAATAATATTAAAAAAA
* *
8705487 ATAATAATATTAATAATA
1 ATAATAATATTAAAAAAA
* *
8705505 ATAACAATAATAAAAAAA
1 ATAATAATATTAAAAAAA
8705523 ATAAT
1 ATAAT
8705528 GGTATAACAT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.29
Consensus pattern (18 bp):
ATAATAATATTAAAAAAA
Found at i:8706330 original size:24 final size:24
Alignment explanation
Indices: 8706300--8706345 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
8706290 AGCCGAAATT
8706300 ATAAAAAAAACAATCAAGTCTAAA
1 ATAAAAAAAACAATCAAGTCTAAA
*
8706324 ATAAAAAAAACCATCAAGTCTA
1 ATAAAAAAAACAATCAAGTCTA
8706346 TATCTTTGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.63, C:0.15, G:0.04, T:0.17
Consensus pattern (24 bp):
ATAAAAAAAACAATCAAGTCTAAA
Found at i:8713126 original size:12 final size:12
Alignment explanation
Indices: 8713109--8713133 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8713099 GGTGTATTTC
8713109 ATTAATTTTATA
1 ATTAATTTTATA
8713121 ATTAATTTTATA
1 ATTAATTTTATA
8713133 A
1 A
8713134 ATTATAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
ATTAATTTTATA
Found at i:8713366 original size:15 final size:15
Alignment explanation
Indices: 8713346--8713376 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8713336 AATTTTAAAA
8713346 TATTTTTTATAAATT
1 TATTTTTTATAAATT
*
8713361 TATTTTTTATATATT
1 TATTTTTTATAAATT
8713376 T
1 T
8713377 TTTCCATGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (15 bp):
TATTTTTTATAAATT
Found at i:8716246 original size:27 final size:28
Alignment explanation
Indices: 8716211--8716277 Score: 68
Period size: 27 Copynumber: 2.5 Consensus size: 28
8716201 AATTTATCAA
8716211 AATTA-ATTATAAAATTAATTAAAATTC
1 AATTATATTATAAAATTAATTAAAATTC
* **
8716238 AA-TATATTA-ATAATTTAATTTCAATTC
1 AATTATATTATA-AAATTAATTAAAATTC
*
8716265 AATTATTTTATAA
1 AATTATATTATAA
8716278 TTATTATATA
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
26 3 0.09
27 21 0.66
28 7 0.22
29 1 0.03
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.46
Consensus pattern (28 bp):
AATTATATTATAAAATTAATTAAAATTC
Found at i:8719658 original size:20 final size:21
Alignment explanation
Indices: 8719632--8719678 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
8719622 CCTAGTTCGA
8719632 CCAATTTTTGGG-TCTT-GGT
1 CCAATTTTTGGGCTCTTGGGT
8719651 CTCAA-TTTTGGGCTCTTGGGT
1 C-CAATTTTTGGGCTCTTGGGT
8719672 CCAATTT
1 CCAATTT
8719679 ACGATCTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
19 8 0.33
20 10 0.42
21 6 0.25
ACGTcount: A:0.13, C:0.19, G:0.23, T:0.45
Consensus pattern (21 bp):
CCAATTTTTGGGCTCTTGGGT
Found at i:8726819 original size:51 final size:51
Alignment explanation
Indices: 8726731--8727048 Score: 469
Period size: 51 Copynumber: 6.3 Consensus size: 51
8726721 ACTTCTGATT
8726731 AGTGACAAGTGATAAGT-AGTAGCTTCAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGA-TAGCTTCAGCTACACTTATCTGATCAGTGACA
* * *
8726782 AGTGGCAAGTGATAAGTGATAGCTTCAGCTCCGCTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACA
* * * *
8726833 AGTGACAAGTGATAAGTGGTATCTTTAGCTACATTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACA
* *
8726884 AGTGGCAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAATGACA
1 AGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACA
* *
8726935 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACA
* * * *
8726986 AGTGGCAAGTGAGAAGTGGTAGCTT-AGCTACACTTATCTGATCAGGGACA
1 AGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACA
*
8727036 AGTGATAAGTGAT
1 AGTGACAAGTGAT
8727049 CATACGTAAG
Statistics
Matches: 240, Mismatches: 26, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
50 34 0.14
51 205 0.85
52 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.28
Consensus pattern (51 bp):
AGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACA
Found at i:8726893 original size:102 final size:102
Alignment explanation
Indices: 8726731--8727048 Score: 530
Period size: 102 Copynumber: 3.1 Consensus size: 102
8726721 ACTTCTGATT
* *
8726731 AGTGACAAGTGATAAGTAGTAGCTTCAGCTACACTTATCTGATCAGTGACAAGTGGCAAGTGATA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGGCAAGTGATA
* *
8726796 AGTGATAGCTTCAGCTCCGCTTATCTGATCAGTGACA
66 AGTGATAGCTTCAGCTACACTTATCTGATCAGTGACA
* *
8726833 AGTGACAAGTGATAAGTGGTATCTTTAGCTACATTTATCTGATCAGTGACAAGTGGCAAGTGATA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGGCAAGTGATA
*
8726898 AGTGATAGCTTCAGCTACACTTATCTGATCAATGACA
66 AGTGATAGCTTCAGCTACACTTATCTGATCAGTGACA
*
8726935 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGGCAAGTGAGA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGGCAAGTGATA
* *
8727000 AGTGGTAGCTT-AGCTACACTTATCTGATCAGGGACA
66 AGTGATAGCTTCAGCTACACTTATCTGATCAGTGACA
*
8727036 AGTGATAAGTGAT
1 AGTGACAAGTGAT
8727049 CATACGTAAG
Statistics
Matches: 202, Mismatches: 14, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
101 35 0.17
102 167 0.83
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.28
Consensus pattern (102 bp):
AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGGCAAGTGATA
AGTGATAGCTTCAGCTACACTTATCTGATCAGTGACA
Found at i:8730296 original size:62 final size:59
Alignment explanation
Indices: 8730186--8730302 Score: 164
Period size: 62 Copynumber: 1.9 Consensus size: 59
8730176 ATTACTTTAA
* * *
8730186 TATTAAATTAATACGATATTTATCAAGATAAATATTAGATTAAATTTAATATTAAATCT
1 TATTAAATTAAGACGATATTTATCAAGATAAACATTAAATTAAATTTAATATTAAATCT
8730245 TATTAAATTAAGA-GAATATTTATCTACAAGATAAACATTAAATTAAATTTAATATTAA
1 TATTAAATTAAGACG-ATATTTA--T-CAAGATAAACATTAAATTAAATTTAATATTAA
8730303 GATAATAACT
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
58 1 0.02
59 19 0.37
61 1 0.02
62 30 0.59
ACGTcount: A:0.50, C:0.05, G:0.05, T:0.40
Consensus pattern (59 bp):
TATTAAATTAAGACGATATTTATCAAGATAAACATTAAATTAAATTTAATATTAAATCT
Found at i:8730328 original size:20 final size:19
Alignment explanation
Indices: 8730281--8730330 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
8730271 CAAGATAAAC
8730281 ATTAAATT-A-AATTTAAT
1 ATTAAATTAATAATTTAAT
8730298 ATTAAGA-TAATAACTTTAAT
1 ATTAA-ATTAATAA-TTTAAT
8730318 ATTAAATTAATAA
1 ATTAAATTAATAA
8730331 AATACTATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
17 6 0.21
18 2 0.07
19 3 0.11
20 17 0.61
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (19 bp):
ATTAAATTAATAATTTAAT
Found at i:8732827 original size:44 final size:44
Alignment explanation
Indices: 8732767--8732901 Score: 180
Period size: 45 Copynumber: 3.0 Consensus size: 44
8732757 CAAACACTCC
* ** *
8732767 AAATTTGCAGACAAGCTGTCATGTAGGTTGTGGATAAACCACCA
1 AAATTCGCAGACAAGCTACCATGTAGGTTGTGGATAAGCCACCA
* *
8732811 AAATTCGTAGACAAGCTACCATGTAGGTTGTGGACGAAGCCACCA
1 AAATTCGCAGACAAGCTACCATGTAGGTTGTGGA-TAAGCCACCA
* *
8732856 ATATTCGCAGACAAGCTACCATGTAGGTTGTAGATGAAGCCACCA
1 AAATTCGCAGACAAGCTACCATGTAGGTTGTGGAT-AAGCCACCA
8732901 A
1 A
8732902 TTCTTTCTCC
Statistics
Matches: 79, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
44 30 0.38
45 49 0.62
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.22
Consensus pattern (44 bp):
AAATTCGCAGACAAGCTACCATGTAGGTTGTGGATAAGCCACCA
Found at i:8741436 original size:30 final size:30
Alignment explanation
Indices: 8741397--8741453 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
8741387 TTTTATAAAT
8741397 AATTAATATTT-AT-TACTTAAAAATATTTAA
1 AATTAATATTTCATATA-TT-AAAATATTTAA
*
8741427 AATTTATATTTCATATATTAAAATATT
1 AATTAATATTTCATATATTAAAATATT
8741454 AACAAGAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
30 18 0.75
31 4 0.17
32 2 0.08
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (30 bp):
AATTAATATTTCATATATTAAAATATTTAA
Found at i:8746715 original size:24 final size:24
Alignment explanation
Indices: 8746662--8746733 Score: 60
Period size: 24 Copynumber: 3.0 Consensus size: 24
8746652 AAAAGCTCAA
*
8746662 AAGAGCC-ATAATCGGGAAGCTCATG
1 AAGAGCCAATAA-CGGGAAGCTC-CG
*
8746687 -CGAGCCAATAACGGGTAA-CTCCG
1 AAGAGCCAATAACGGG-AAGCTCCG
* *
8746710 AAGAGCTATTAACGGGAAGCTCCG
1 AAGAGCCAATAACGGGAAGCTCCG
8746734 GATAGCCATT
Statistics
Matches: 38, Mismatches: 5, Indels: 9
0.73 0.10 0.17
Matches are distributed among these distances:
23 3 0.08
24 29 0.76
25 6 0.16
ACGTcount: A:0.33, C:0.24, G:0.28, T:0.15
Consensus pattern (24 bp):
AAGAGCCAATAACGGGAAGCTCCG
Found at i:8762721 original size:39 final size:40
Alignment explanation
Indices: 8762678--8762782 Score: 113
Period size: 44 Copynumber: 2.5 Consensus size: 40
8762668 TTCCATTATG
8762678 CTATTACACCTCTATTCCATTCAACCAAACACAAGA-TTA
1 CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
* *** *
8762717 CTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATTTG
1 CTATTACACCTCTATT-C----CATTCAACCAAACACAAGATTTA
8762762 CTATTACACCTCTATTCCATT
1 CTATTACACCTCTATTCCATT
8762783 ACACCTCTAA
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
39 15 0.28
40 5 0.09
44 17 0.31
45 17 0.31
ACGTcount: A:0.31, C:0.30, G:0.05, T:0.34
Consensus pattern (40 bp):
CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
Found at i:8762776 original size:45 final size:44
Alignment explanation
Indices: 8762676--8762785 Score: 131
Period size: 45 Copynumber: 2.6 Consensus size: 44
8762666 TTTTCCATTA
8762676 TGCTATTACACCTCTATT-C----CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
* * ***
8762715 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGA-T
8762760 TGCTATTACACCTCTATTCCATTACA
1 TGCTATTACACCTCTATTCCATTACA
8762786 CCTCTAATCC
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 25 0.43
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
Found at i:8762785 original size:16 final size:16
Alignment explanation
Indices: 8762764--8762796 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
8762754 TTGATTTGCT
*
8762764 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
8762780 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
8762796 A
1 A
8762797 ATATAGCGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.36, G:0.00, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:8769374 original size:30 final size:31
Alignment explanation
Indices: 8769335--8769394 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
8769325 GGAGGTGAGA
*
8769335 TGGGAAGGGAATAAAAGTTTTAGGGGAAAAG
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
* *
8769366 TGGG-AGGGACTAAAAATTTTGGGGGAAAA
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAA
8769395 TAAAAGATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.40, C:0.02, G:0.38, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
Found at i:8772363 original size:18 final size:19
Alignment explanation
Indices: 8772321--8772363 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
8772311 TCTGCTTCAA
*
8772321 TTTAATTTTTACTAATTATT
1 TTTAATTTTTA-TAAATATT
*
8772341 ATTAATTTTT-TAAATATT
1 TTTAATTTTTATAAATATT
8772359 TTTAA
1 TTTAA
8772364 AATTAAATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 11 0.55
20 9 0.45
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (19 bp):
TTTAATTTTTATAAATATT
Found at i:8773231 original size:34 final size:34
Alignment explanation
Indices: 8773132--8773236 Score: 140
Period size: 34 Copynumber: 3.1 Consensus size: 34
8773122 GTTTCTTTTT
* **
8773132 AAAAATTAATTAAATTAGGGTTTAG-GGGTTTAA
1 AAAAATTAATTAAATTTGGGTTTAGTGTTTTTAA
*
8773165 AATAAATTAATTAAATTTGAGTTTAGTGTTTTTAA
1 AA-AAATTAATTAAATTTGGGTTTAGTGTTTTTAA
* *
8773200 GAAAATTAATTAAATTTGGGTTTAGTTTTTTTAA
1 AAAAATTAATTAAATTTGGGTTTAGTGTTTTTAA
8773234 AAA
1 AAA
8773237 TAATATTGTG
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
33 2 0.03
34 53 0.85
35 7 0.11
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (34 bp):
AAAAATTAATTAAATTTGGGTTTAGTGTTTTTAA
Found at i:8773594 original size:126 final size:126
Alignment explanation
Indices: 8773297--8773815 Score: 720
Period size: 126 Copynumber: 4.1 Consensus size: 126
8773287 GATTTTGGTT
*
8773297 TTTTTCTACAATAGTTCCTAAAAAAATAATTTTGAGAAGACGGTTCTGAACAAATAGTGTC-AAA
1 TTTTTCTACAGTAGTTCCTAAAAAAATAATTTTGAGAAGACGGTTCTGAACAAATAGTGTCAAAA
* * ** * * ** * *
8773361 GCGCTTCAAACAGGATGCACGGTCAGC-TAATTACTGGAAAAAGCTCTTACATGGATGCTC
66 ACGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
8773421 TTTTTCTACAGTAGTTCCTAAAAAAATAATTTTGAGAAGACGGTTCTGAACAAATAGTGTCAAAA
1 TTTTTCTACAGTAGTTCCTAAAAAAATAATTTTGAGAAGACGGTTCTGAACAAATAGTGTCAAAA
* * * ** *
8773486 ACGCTTCAAGCAGGATACACTGTCAACAAAATTGTTGAAAAAAGCTCCCACGTGGACACTC
66 ACGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
* * *
8773547 TTTTTCTACAATAGTTCCTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAA
1 TTTTTCTACAGTAGTTCCTAAAAAAATAATTTTGAGAAGACGGTTCTGAACAAATAGTGTCAAAA
* * *
8773612 ACACTTCAAGCAGGATGCACTATCAGCAAAATTGA-TGAAAAAAGCTCCCACGTGAACGTTC
66 ACGCTTCAAGCAGGATGCACTATCAGCAAAATT-ACTGAAAAAAGCTCCCACGTGGACGCTC
* * **
8773673 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAAACATTTCTGAACAAATAGTGTCAAAA
1 TTTTTCTACAGTAGTTCCTAAAAAAATAATTTTGAGAAGACGGTTCTGAACAAATAGTGTCAAAA
* * * *
8773738 ATGTTTCAAGTAGGATTCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
66 ACGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
*
8773799 TTTTACTACAGTAGTTC
1 TTTTTCTACAGTAGTTC
8773816 ATGTGTTGCC
Statistics
Matches: 354, Mismatches: 37, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
124 60 0.17
125 26 0.07
126 268 0.76
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.28
Consensus pattern (126 bp):
TTTTTCTACAGTAGTTCCTAAAAAAATAATTTTGAGAAGACGGTTCTGAACAAATAGTGTCAAAA
ACGCTTCAAGCAGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
Found at i:8775862 original size:14 final size:14
Alignment explanation
Indices: 8775845--8775905 Score: 54
Period size: 14 Copynumber: 4.3 Consensus size: 14
8775835 TATAACATAG
8775845 ATAATATATATATA
1 ATAATATATATATA
*
8775859 ATAATATGAAAT-TA
1 ATAATAT-ATATATA
8775873 ATAATATAT-TATA
1 ATAATATATATATA
* *
8775886 TATGTATATATGTATA
1 -AT-AATATATATATA
8775902 ATAA
1 ATAA
8775906 AAATATTTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
12 1 0.03
13 3 0.08
14 19 0.50
15 11 0.29
16 4 0.11
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (14 bp):
ATAATATATATATA
Found at i:8776031 original size:16 final size:16
Alignment explanation
Indices: 8776010--8776042 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8776000 AGTGAATTAA
8776010 AAAAAT-ATTATAAAAT
1 AAAAATCATT-TAAAAT
8776026 AAAAATCATTTAAAAT
1 AAAAATCATTTAAAAT
8776042 A
1 A
8776043 TTATTATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.81
17 3 0.19
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (16 bp):
AAAAATCATTTAAAAT
Found at i:8776090 original size:23 final size:24
Alignment explanation
Indices: 8776060--8776109 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 24
8776050 ATAAAAAAAT
*
8776060 AAAGTAATACATTATAA-AAT-TA
1 AAAGTAATACATGATAATAATATA
*
8776082 AAAGATAATATATGATAATAATATA
1 AAAG-TAATACATGATAATAATATA
8776107 AAA
1 AAA
8776110 CTTAAAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 4 0.17
23 11 0.48
24 3 0.13
25 5 0.22
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.30
Consensus pattern (24 bp):
AAAGTAATACATGATAATAATATA
Found at i:8776130 original size:30 final size:33
Alignment explanation
Indices: 8776072--8776141 Score: 89
Period size: 30 Copynumber: 2.3 Consensus size: 33
8776062 AGTAATACAT
8776072 TATAAAA-TTAAAAGATAATATATGATAATA-A
1 TATAAAACTTAAAAGATAATATATGATAATAGA
8776103 TATAAAACTT-AAA-ATAATAGTAT-ATAATAGA
1 TATAAAACTTAAAAGATAATA-TATGATAATAGA
8776134 -ATAAAACT
1 TATAAAACT
8776142 ATGTATATGA
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
30 20 0.56
31 14 0.39
32 2 0.06
ACGTcount: A:0.60, C:0.03, G:0.06, T:0.31
Consensus pattern (33 bp):
TATAAAACTTAAAAGATAATATATGATAATAGA
Found at i:8776199 original size:3 final size:3
Alignment explanation
Indices: 8776183--8776233 Score: 59
Period size: 3 Copynumber: 17.0 Consensus size: 3
8776173 ACTAATATAG
* * *
8776183 TAA TAA T-A TCAA TAA TAA TAT TAG TAA TAA TAA TGA TAA TAA TAA
1 TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8776228 TAA TAA
1 TAA TAA
8776234 ATTAATTGAT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
2 2 0.05
3 37 0.90
4 2 0.05
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:8777731 original size:45 final size:45
Alignment explanation
Indices: 8777664--8777920 Score: 117
Period size: 44 Copynumber: 5.6 Consensus size: 45
8777654 TAATCTGTTT
** * * * * *
8777664 CACTGCAACACCAGGGAAATAAGATTTGCCGTCTTCAGTCTGCTC
1 CACTGCAACTTCAGGGAGATAAGATCTGCCGGCTTCAATCTCCTC
* * **
8777709 CGCTGCAACTTCAGGGAGATAAG-GCTGGTGGCTTCAATCTCCTC
1 CACTGCAACTTCAGGGAGATAAGATCTGCCGGCTTCAATCTCCTC
* ** * **
8777753 CACTGCAACTTCAGGAAGATAAGATCCACCATAATTTGTAGCTTTAATCTGTTC
1 CACTGCAACTTCAGGGAGATAAGATCTGCC-------G--GCTTCAATCTCCTC
* * *** *
8777807 CACTGCAA-TGCCAGGGAAATAAGAT-TCGCTATCTTCAATCTACTC
1 CACTGCAACT-TCAGGGAGATAAGATCT-GCCGGCTTCAATCTCCTC
* * ** *
8777852 CGCTGCAACTTCAAGGAGATAAG-TCTGGTGGCTTCAATCTGCTC
1 CACTGCAACTTCAGGGAGATAAGATCTGCCGGCTTCAATCTCCTC
* *
8777896 CACTGCAACTTCAAGAAGATAAGAT
1 CACTGCAACTTCAGGGAGATAAGAT
8777921 TCACCATAAC
Statistics
Matches: 155, Mismatches: 42, Indels: 30
0.68 0.19 0.13
Matches are distributed among these distances:
44 71 0.46
45 49 0.32
46 1 0.01
52 1 0.01
53 1 0.01
54 32 0.21
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.26
Consensus pattern (45 bp):
CACTGCAACTTCAGGGAGATAAGATCTGCCGGCTTCAATCTCCTC
Found at i:8777853 original size:143 final size:143
Alignment explanation
Indices: 8777569--8778485 Score: 1214
Period size: 143 Copynumber: 6.4 Consensus size: 143
8777559 ATCCACTCTA
** * * *
8777569 CTGCAACTTCAGATAGATTAGGATGG-GGCTTCAATCTGCTCCATTGCAACTTCAGGAAGATAAG
1 CTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAG
* * * * * *
8777633 ATTCGCCATAACTTGTAGCTTTAATCTGTTTCACTGCAACACCAGGGAAATAAGATTTGCCGTCT
66 ATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGTCT
8777698 TCAGTCTGCTCCG
131 TCAGTCTGCTCCG
*
8777711 CTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTCCTCCACTGCAACTTCAGGAAGATAAG
1 CTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAG
* * *
8777776 ATCCACCATAATTTGTAGCTTTAATCTGTTCCACTGCAATGCCAGGGAAATAAGATTCGCTATCT
66 ATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGTCT
* *
8777841 TCAATCTACTCCG
131 TCAGTCTGCTCCG
* * *
8777854 CTGCAACTTCAAGGAGATAAGTCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAAGAAGATAAG
1 CTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAG
* * * * * *
8777919 ATTCACCATAACTTGTAGCTTTAATCTGTTCCACTGCAGCGCGAGGGAAATAAGATTCGTTGTCT
66 ATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGTCT
8777984 TCAGTCTGCTCCG
131 TCAGTCTGCTCCG
* * *
8777997 CTGCAATTTCAGGGAGATAAGGCTAGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAT
1 CTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAG
* ** * * * *
8778062 ATTCGCCATAATTTGTAGCTTTAATCTACTCCACTACAATGCCAAGGAAATAA-AATCTGCTGTC
66 ATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTC-GCTGTC
*
8778126 TTCAGTCTACTCCG
130 TTCAGTCTGCTCCG
* * * * **
8778140 TTGCAACTTCAGGGAGATAAGGCTGATGGCCTCAATATGCTCCACCACAACTTCAGGAAGATAAG
1 CTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAG
* **
8778205 ATCCGCCATAATTTGTAACTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCATTGTCT
66 ATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGTCT
*
8778270 TCAGTCTGCTCTG
131 TCAGTCTGCTCCG
* ** *
8778283 CTACAACTTCAGGGAGATAAGGCTAATGGCTTCAATCTGCTCCACTGTAACTTCAGGAAGATAAG
1 CTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAG
* * * * *
8778348 ATCTGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACACTAGGGAAATAAGATTCGATATCT
66 ATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGTCT
* *
8778413 TCAATCTGCTCCA
131 TCAGTCTGCTCCG
* * ** * *
8778426 CTGCAACTTCAAGGAGATAAGACT--T-GCTTCAATCCACCCCACTGCAACTTCAAGAAGATA
1 CTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATA
8778486 GGAATTATGT
Statistics
Matches: 677, Mismatches: 95, Indels: 8
0.87 0.12 0.01
Matches are distributed among these distances:
140 30 0.04
141 1 0.00
142 25 0.04
143 618 0.91
144 3 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (143 bp):
CTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAG
ATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGTCT
TCAGTCTGCTCCG
Found at i:8778017 original size:45 final size:44
Alignment explanation
Indices: 8777936--8778066 Score: 111
Period size: 44 Copynumber: 3.0 Consensus size: 44
8777926 ATAACTTGTA
* * * * *
8777936 GCTTTAATCTGTTCCACTGCAGC-GCGAGGGAAATAAGATTCGTTG
1 GCTTCAATCTGCTCCACTGCAACTTC-AGGGAGATAAGATTCG-TG
* * * * ** *
8777981 TCTTCAGTCTGCTCCGCTGCAATTTCAGGGAGATAAGGCTAGTG
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGTG
* *
8778025 GCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAATATTCG
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCG
8778067 CCATAATTTG
Statistics
Matches: 64, Mismatches: 21, Indels: 3
0.73 0.24 0.03
Matches are distributed among these distances:
44 35 0.55
45 28 0.44
46 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (44 bp):
GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGTG
Found at i:8779764 original size:8 final size:8
Alignment explanation
Indices: 8779753--8779786 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
8779743 ATTTTTTACA
8779753 TTTTTTAT
1 TTTTTTAT
8779761 TTTTTTA-
1 TTTTTTAT
8779768 -TTTTTAT
1 TTTTTTAT
8779775 TTTTTTAT
1 TTTTTTAT
8779783 TTTT
1 TTTT
8779787 ACGACTGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 6 0.25
8 18 0.75
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTTTTAT
Found at i:8779771 original size:14 final size:14
Alignment explanation
Indices: 8779754--8779787 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
8779744 TTTTTTACAT
8779754 TTTTTATTTTTTTA
1 TTTTTATTTTTTTA
8779768 TTTTTATTTTTTTA
1 TTTTTATTTTTTTA
8779782 TTTTTA
1 TTTTTA
8779788 CGACTGAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTTTATTTTTTTA
Found at i:8779853 original size:50 final size:51
Alignment explanation
Indices: 8779776--8779892 Score: 139
Period size: 50 Copynumber: 2.3 Consensus size: 51
8779766 TATTTTTATT
* *
8779776 TTTTTATTTTTACGACTGAAAGCGCCCTTTGC-AGGTTTTCACCTTGGT-TTC
1 TTTTT-TTTTTAGGACTCAAAGCGCCCTTTGCGA-GTTTTCACCTTGGTCTTC
* *
8779827 TTTTTTTTTTAGGACTCAAGGTGCCCTTTGCGAGTTTTCACCTTGGTCCCTTC
1 TTTTTTTTTTAGGACTCAAAGCGCCCTTTGCGAGTTTTCACCTTGGT--CTTC
*
8779880 TTATTTTTTTAGG
1 TTTTTTTTTTAGG
8779893 CAAAGTCTTT
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
50 36 0.63
51 6 0.11
53 15 0.26
ACGTcount: A:0.14, C:0.21, G:0.18, T:0.48
Consensus pattern (51 bp):
TTTTTTTTTTAGGACTCAAAGCGCCCTTTGCGAGTTTTCACCTTGGTCTTC
Found at i:8782626 original size:19 final size:20
Alignment explanation
Indices: 8782602--8782648 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
8782592 GTTGAAACTT
* *
8782602 TAATGCATATG-ATGTAATG
1 TAATGCAAATGCATGAAATG
8782621 TAATGCAAATGCATGAAATG
1 TAATGCAAATGCATGAAATG
8782641 -AATGCAAA
1 TAATGCAAA
8782649 AAGGCGTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.45, C:0.09, G:0.19, T:0.28
Consensus pattern (20 bp):
TAATGCAAATGCATGAAATG
Found at i:8783174 original size:16 final size:16
Alignment explanation
Indices: 8783132--8783174 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
8783122 ATGAGCATGT
*
8783132 CATGCAGTCAAGATGT
1 CATGCAGTCAAGATGC
* *
8783148 CGTACAGTCAAGATGC
1 CATGCAGTCAAGATGC
*
8783164 CATGCAATCAA
1 CATGCAGTCAA
8783175 AACGAAACAC
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.21
Consensus pattern (16 bp):
CATGCAGTCAAGATGC
Found at i:8785307 original size:16 final size:16
Alignment explanation
Indices: 8785286--8785318 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8785276 AAGTGATTTA
8785286 AAAAAT-ATTATAAAAT
1 AAAAATCATTA-AAAAT
8785302 AAAAATCATTAAAAAT
1 AAAAATCATTAAAAAT
8785318 A
1 A
8785319 TTTATTATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (16 bp):
AAAAATCATTAAAAAT
Found at i:8785376 original size:23 final size:25
Alignment explanation
Indices: 8785339--8785385 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 25
8785329 AAAAAAATAA
*
8785339 AATAATACATTATAA-AAT-TAAAC
1 AATAATACATGATAATAATATAAAC
*
8785362 AATAATATATGATAATAATATAAA
1 AATAATACATGATAATAATATAAA
8785386 ACTTAAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 13 0.65
24 3 0.15
25 4 0.20
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (25 bp):
AATAATACATGATAATAATATAAAC
Found at i:8785377 original size:33 final size:30
Alignment explanation
Indices: 8785340--8785418 Score: 83
Period size: 30 Copynumber: 2.5 Consensus size: 30
8785330 AAAAAATAAA
8785340 ATAATACATTATAAAA-TTAAACAATAATA-TAT
1 ATAATA-A-TATAAAACTT-AA-AATAATAGTAT
8785372 GATAATAATATAAAACTTAAAATAATAGTAT
1 -ATAATAATATAAAACTTAAAATAATAGTAT
8785403 ATAATAGA-ATAAAACT
1 ATAATA-ATATAAAACT
8785419 ATAGTAATAA
Statistics
Matches: 43, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
30 21 0.49
31 13 0.30
32 3 0.07
33 6 0.14
ACGTcount: A:0.59, C:0.05, G:0.04, T:0.32
Consensus pattern (30 bp):
ATAATAATATAAAACTTAAAATAATAGTAT
Found at i:8785439 original size:3 final size:3
Alignment explanation
Indices: 8785423--8785485 Score: 74
Period size: 3 Copynumber: 21.0 Consensus size: 3
8785413 AAAACTATAG
* * * *
8785423 TAA TAA T-A TCAA TAA TAA TAA TAT TAG TAA TAA TAA TGA TAA TGA
1 TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8785468 TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA
8785486 ATTAATTGAT
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
2 2 0.04
3 47 0.92
4 2 0.04
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:8785482 original size:18 final size:18
Alignment explanation
Indices: 8785362--8785483 Score: 74
Period size: 18 Copynumber: 6.5 Consensus size: 18
8785352 AAAATTAAAC
8785362 AATAATATATGATAATAAT
1 AATAATA-ATGATAATAAT
* *
8785381 -ATAA-AACTTAAAATAAT
1 AATAATAA-TGATAATAAT
*
8785398 AGTATATAATAGAATAA-AACT
1 AATA-ATAAT-G-ATAATAA-T
8785419 ATAGTAATAAT-ATCAATAAT
1 A-A-TAATAATGAT-AATAAT
*
8785439 AATAAT-ATTAGTAATAAT
1 AATAATAATGA-TAATAAT
*
8785457 AATGATAATGATAATAAT
1 AATAATAATGATAATAAT
8785475 AATAATAAT
1 AATAATAAT
8785484 AAATTAATTG
Statistics
Matches: 80, Mismatches: 9, Indels: 29
0.68 0.08 0.25
Matches are distributed among these distances:
16 1 0.01
17 11 0.14
18 37 0.46
19 9 0.11
20 8 0.10
21 7 0.09
22 5 0.06
23 2 0.03
ACGTcount: A:0.58, C:0.02, G:0.06, T:0.34
Consensus pattern (18 bp):
AATAATAATGATAATAAT
Found at i:8788779 original size:24 final size:23
Alignment explanation
Indices: 8788723--8788779 Score: 62
Period size: 26 Copynumber: 2.3 Consensus size: 23
8788713 AAGAACTTTT
8788723 ATTTTATTAAAAATATAAAAATA
1 ATTTTATTAAAAATATAAAAATA
*
8788746 ATTTACTATTAAAATATTTAAAACA-A
1 ATTT--TATTAAAA-ATATAAAA-ATA
8788772 ATTTTATT
1 ATTTTATT
8788780 TTATTAAATG
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
23 4 0.14
24 4 0.14
25 8 0.28
26 12 0.41
27 1 0.03
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.44
Consensus pattern (23 bp):
ATTTTATTAAAAATATAAAAATA
Found at i:8788874 original size:21 final size:21
Alignment explanation
Indices: 8788848--8788917 Score: 122
Period size: 21 Copynumber: 3.3 Consensus size: 21
8788838 GTGGTTCAGC
*
8788848 TTCCGGTGAGGGTTATGGTTG
1 TTCCGGTGAGGGTTGTGGTTG
*
8788869 CTCCGGTGAGGGTTGTGGTTG
1 TTCCGGTGAGGGTTGTGGTTG
8788890 TTCCGGTGAGGGTTGTGGTTG
1 TTCCGGTGAGGGTTGTGGTTG
8788911 TTCCGGT
1 TTCCGGT
8788918 TGTGGGTGTT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.06, C:0.13, G:0.44, T:0.37
Consensus pattern (21 bp):
TTCCGGTGAGGGTTGTGGTTG
Found at i:8790032 original size:13 final size:13
Alignment explanation
Indices: 8789994--8790026 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
8789984 AGGCATAGAC
8789994 TACCTTTGTAACA
1 TACCTTTGTAACA
8790007 TACCTTTGTAACA
1 TACCTTTGTAACA
8790020 TACCTTT
1 TACCTTT
8790027 CGAACAGTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.27, C:0.24, G:0.06, T:0.42
Consensus pattern (13 bp):
TACCTTTGTAACA
Found at i:8791242 original size:18 final size:18
Alignment explanation
Indices: 8791219--8791254 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
8791209 GGAAAAGTAA
*
8791219 ACATATAAGGGTTAGGAT
1 ACATATAAGGGCTAGGAT
8791237 ACATATAAGGGCTAGGAT
1 ACATATAAGGGCTAGGAT
8791255 GCGTACCTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.08, G:0.28, T:0.25
Consensus pattern (18 bp):
ACATATAAGGGCTAGGAT
Found at i:8793632 original size:22 final size:22
Alignment explanation
Indices: 8793588--8793650 Score: 65
Period size: 22 Copynumber: 2.8 Consensus size: 22
8793578 CTCACTCACG
*
8793588 TATTTTTACTTTTCATTTATTT
1 TATTTTTTCTTTTCATTTATTT
*
8793610 TATTTTTTCTTTTC-TTCTCTTT
1 TATTTTTTCTTTTCATT-TATTT
* *
8793632 TCTTTCTTTTTTTTCATTT
1 TATTT-TTTCTTTTCATTT
8793651 TGAATTTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
21 2 0.06
22 21 0.62
23 9 0.26
24 2 0.06
ACGTcount: A:0.10, C:0.14, G:0.00, T:0.76
Consensus pattern (22 bp):
TATTTTTTCTTTTCATTTATTT
Found at i:8799940 original size:11 final size:12
Alignment explanation
Indices: 8799926--8799955 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
8799916 TTTAGGCTTA
8799926 GTTTTCT-CTAG
1 GTTTTCTCCTAG
8799937 GTTTTCTCCTAG
1 GTTTTCTCCTAG
8799949 GTTTTCT
1 GTTTTCT
8799956 TCCTCTTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.07, C:0.20, G:0.17, T:0.57
Consensus pattern (12 bp):
GTTTTCTCCTAG
Found at i:8800670 original size:20 final size:19
Alignment explanation
Indices: 8800645--8800684 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
8800635 TTCTTTAAAA
8800645 TAAAAATGAATGTCAAATTT
1 TAAAAATGAATGTC-AATTT
**
8800665 TAAAAATTTATGTCAATTT
1 TAAAAATGAATGTCAATTT
8800684 T
1 T
8800685 TGGGGGGGCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.45, C:0.05, G:0.07, T:0.42
Consensus pattern (19 bp):
TAAAAATGAATGTCAATTT
Found at i:8803305 original size:21 final size:22
Alignment explanation
Indices: 8803266--8803323 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 22
8803256 CTCAAAAGTA
* * * *
8803266 AATAATTTTAATATCTAGATAT
1 AATATTTTTTATATCTAGAAAG
*
8803288 TATATTTTTTATAT-TAGAAAG
1 AATATTTTTTATATCTAGAAAG
8803309 AATATTGTTTTATAT
1 AATATT-TTTTATAT
8803324 AATATTGATA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
21 10 0.34
22 19 0.66
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.52
Consensus pattern (22 bp):
AATATTTTTTATATCTAGAAAG
Found at i:8808762 original size:15 final size:17
Alignment explanation
Indices: 8808739--8808781 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
8808729 TAACCATAAT
8808739 TAATATATTAAT-AAATA
1 TAAT-TATTAATAAAATA
8808756 -AATTATTAAATAAAATA
1 TAATTATT-AATAAAATA
8808773 TAATTATTA
1 TAATTATTA
8808782 TAATTTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 4 0.17
16 6 0.26
17 6 0.26
18 7 0.30
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
TAATTATTAATAAAATA
Found at i:8813316 original size:16 final size:15
Alignment explanation
Indices: 8813291--8813320 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
8813281 TCGTACTTTC
8813291 ATAGATATTAATTAT
1 ATAGATATTAATTAT
8813306 ATAGCATATTAATTA
1 ATAG-ATATTAATTA
8813321 GTTAGAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.43
Consensus pattern (15 bp):
ATAGATATTAATTAT
Found at i:8813330 original size:16 final size:16
Alignment explanation
Indices: 8813291--8813331 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
8813281 TCGTACTTTC
8813291 ATAG-ATATTAATTAT
1 ATAGAATATTAATTAT
*
8813306 ATAGCATATTAATTAGT
1 ATAGAATATTAATTA-T
8813323 -TAGAATATT
1 ATAGAATATT
8813332 TATAGATATG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 4 0.17
16 18 0.78
17 1 0.04
ACGTcount: A:0.44, C:0.02, G:0.10, T:0.44
Consensus pattern (16 bp):
ATAGAATATTAATTAT
Found at i:8815014 original size:19 final size:16
Alignment explanation
Indices: 8814978--8815132 Score: 114
Period size: 17 Copynumber: 8.9 Consensus size: 16
8814968 CGAGATTTTT
* *
8814978 TTTTAAAACACGAGAA
1 TTTTGAAACACGAAAA
8814994 TTTTGAAACACGATAATAA
1 TTTTGAAACACG--AA-AA
8815013 TTTTTGAAAACACGAAAA
1 -TTTTG-AAACACGAAAA
**
8815031 TTTGTGAAACACGGGAA
1 TTT-TGAAACACGAAAA
8815048 TTGTTGAAAACACGAAAA
1 TT-TTG-AAACACGAAAA
8815066 TTTTAGAAACACCG-AAA
1 TTTT-GAAACA-CGAAAA
* *
8815083 TTTTGTAAAACACTAAGAT
1 TTTTG--AAACACGAA-AA
*
8815102 TTTTGAAACACGAAGAT
1 TTTTGAAACACGAA-AA
8815119 TTTTGAAACACGAA
1 TTTTGAAACACGAA
8815133 TTTTATTTTT
Statistics
Matches: 116, Mismatches: 9, Indels: 27
0.76 0.06 0.18
Matches are distributed among these distances:
16 12 0.10
17 56 0.48
18 26 0.22
19 10 0.09
20 5 0.04
21 7 0.06
ACGTcount: A:0.45, C:0.12, G:0.15, T:0.28
Consensus pattern (16 bp):
TTTTGAAACACGAAAA
Found at i:8815062 original size:35 final size:33
Alignment explanation
Indices: 8814977--8815132 Score: 136
Period size: 35 Copynumber: 4.5 Consensus size: 33
8814967 ACGAGATTTT
* * *
8814977 TTTTTAAAACACGAGAATTTTGAAACACGATAATAA
1 TTTTGAAAACACGAAAATTTTGAAACACG--GA-AA
*
8815013 TTTTTGAAAACACGAAAATTTGTGAAACACGGGAA
1 -TTTTGAAAACACGAAAATTT-TGAAACACGGAAA
*
8815048 TTGTTGAAAACACGAAAATTTTAGAAACACCGAAA
1 TT-TTGAAAACACGAAAATTTT-GAAACACGGAAA
* *
8815083 TTTTGTAAAACACTAAGATTTTTGAAACAC-GAAGA
1 TTTTG-AAAACACGAA-AATTTTGAAACACGGAA-A
8815118 TTTTTG-AAACACGAA
1 -TTTTGAAAACACGAA
8815133 TTTTATTTTT
Statistics
Matches: 103, Mismatches: 9, Indels: 17
0.80 0.07 0.13
Matches are distributed among these distances:
34 17 0.17
35 49 0.48
36 10 0.10
37 18 0.17
38 9 0.09
ACGTcount: A:0.45, C:0.12, G:0.15, T:0.28
Consensus pattern (33 bp):
TTTTGAAAACACGAAAATTTTGAAACACGGAAA
Found at i:8815178 original size:29 final size:29
Alignment explanation
Indices: 8815145--8815200 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
8815135 TTATTTTTTT
8815145 AAGAAACACAAAAATTTGTGAAAACACGG
1 AAGAAACACAAAAATTTGTGAAAACACGG
*
8815174 AAGAAACACAAAGATTTGTGAAAACAC
1 AAGAAACACAAAAATTTGTGAAAACAC
8815201 AATTTTTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.55, C:0.14, G:0.16, T:0.14
Consensus pattern (29 bp):
AAGAAACACAAAAATTTGTGAAAACACGG
Found at i:8815218 original size:21 final size:23
Alignment explanation
Indices: 8815187--8815236 Score: 77
Period size: 22 Copynumber: 2.2 Consensus size: 23
8815177 AAACACAAAG
8815187 ATTTGTGAAAACAC-AATTTTTTT
1 ATTT-TGAAAACACGAATTTTTTT
8815210 -TTTTGAAAACACGAATTTTTTT
1 ATTTTGAAAACACGAATTTTTTT
8815232 ATTTT
1 ATTTT
8815237 TTCTTAAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 9 0.36
22 12 0.48
23 4 0.16
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.52
Consensus pattern (23 bp):
ATTTTGAAAACACGAATTTTTTT
Found at i:8815379 original size:27 final size:28
Alignment explanation
Indices: 8815349--8815406 Score: 91
Period size: 27 Copynumber: 2.1 Consensus size: 28
8815339 CTTGATTCTA
*
8815349 TTAAAACACGAGAAATTTTT-ATTTTTT
1 TTAAAACACGAGAAATTTTTAATATTTT
*
8815376 TTAAAACACGAGAATTTTTTAATATTTT
1 TTAAAACACGAGAAATTTTTAATATTTT
8815404 TTA
1 TTA
8815407 TTTTTAAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
27 19 0.68
28 9 0.32
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.48
Consensus pattern (28 bp):
TTAAAACACGAGAAATTTTTAATATTTT
Found at i:8815668 original size:10 final size:10
Alignment explanation
Indices: 8815655--8815699 Score: 54
Period size: 10 Copynumber: 4.5 Consensus size: 10
8815645 CCCTTTTCCC
8815655 TTTTTTTTCT
1 TTTTTTTTCT
*
8815665 TTTTTTCTCT
1 TTTTTTTTCT
* *
8815675 TCTTTTTTCC
1 TTTTTTTTCT
*
8815685 TCTTTTTTCT
1 TTTTTTTTCT
8815695 TTTTT
1 TTTTT
8815700 CATTTTCCCT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 29 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:8815884 original size:13 final size:13
Alignment explanation
Indices: 8815866--8815912 Score: 55
Period size: 12 Copynumber: 3.8 Consensus size: 13
8815856 GTTTTTTTAA
8815866 TTTTTTTCTTTCC
1 TTTTTTTCTTTCC
8815879 -TTTTTT-TTT-C
1 TTTTTTTCTTTCC
*
8815889 TCTTTTTTCTTTCT
1 T-TTTTTTCTTTCC
8815903 TTTTTTTCTT
1 TTTTTTTCTT
8815913 CTTCTTTAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
10 1 0.03
11 3 0.10
12 12 0.41
13 12 0.41
14 1 0.03
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTTTTCTTTCC
Found at i:8815887 original size:24 final size:23
Alignment explanation
Indices: 8815857--8815909 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
8815847 CTGTTTTAGG
*
8815857 TTTTTTTAAT-TTTTTTCTTTCCT
1 TTTTTTTTATCTTTTTTCTTT-CT
*
8815880 TTTTTTTTCTCTTTTTTCTTTCT
1 TTTTTTTTATCTTTTTTCTTTCT
8815903 TTTTTTT
1 TTTTTTT
8815910 CTTCTTCTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
23 17 0.63
24 10 0.37
ACGTcount: A:0.04, C:0.13, G:0.00, T:0.83
Consensus pattern (23 bp):
TTTTTTTTATCTTTTTTCTTTCT
Found at i:8815915 original size:12 final size:13
Alignment explanation
Indices: 8815866--8815912 Score: 62
Period size: 13 Copynumber: 3.8 Consensus size: 13
8815856 GTTTTTTTAA
8815866 TTTTTTTCTTTC-
1 TTTTTTTCTTTCT
*
8815878 CTTTTTT-TTTCT
1 TTTTTTTCTTTCT
*
8815890 CTTTTTTCTTTCT
1 TTTTTTTCTTTCT
8815903 TTTTTTTCTT
1 TTTTTTTCTT
8815913 CTTCTTTAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
11 4 0.13
12 13 0.42
13 14 0.45
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTTTTCTTTCT
Found at i:8816092 original size:26 final size:26
Alignment explanation
Indices: 8816041--8816092 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
8816031 CCTCTTTTTA
*
8816041 CTCTTCTCTTCTCCCTTTCACTTTCT
1 CTCTTCTCTTCTCCCTTTCACATTCT
*
8816067 CTCTTTTCTTCTCTCCTTTC-CATTCT
1 CTCTTCTCTTCTC-CCTTTCACATTCT
8816093 TTTTCTTTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 17 0.74
27 6 0.26
ACGTcount: A:0.04, C:0.40, G:0.00, T:0.56
Consensus pattern (26 bp):
CTCTTCTCTTCTCCCTTTCACATTCT
Found at i:8816785 original size:16 final size:16
Alignment explanation
Indices: 8816761--8816793 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
8816751 GGGGTTAAAA
8816761 TGTAATTTATATTTTT
1 TGTAATTTATATTTTT
*
8816777 TGTATTTTATATTTTT
1 TGTAATTTATATTTTT
8816793 T
1 T
8816794 TTCAAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.73
Consensus pattern (16 bp):
TGTAATTTATATTTTT
Found at i:8817328 original size:81 final size:78
Alignment explanation
Indices: 8817124--8817522 Score: 488
Period size: 81 Copynumber: 5.1 Consensus size: 78
8817114 TGGGTTGACC
* * * * *
8817124 TTTGAAAAATAGAAATTGAAAAATACCTTGGCATGTAACCCGAGGCTCAACTTATCTCTCGCAAT
1 TTTGAAAAATAGAAATTAAAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAAT
8817189 ATGAGTTGA--TT
66 ATGAGTTGATTTT
* * *
8817200 TTTGAAAAGTAGAAATTTAAAAAAAGTACCTCAGCATGTGACCCGAGGCTCAACTCACCTCCCGC
1 TTTGAAAAATAGAAA-TT-AAAAAA-TACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGC
*
8817265 AATATAAGTTGATTTT
63 AATATGAGTTGATTTT
*
8817281 TTTGAAAAATAGAAATTAAAAAGAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTTTCGC
1 TTTGAAAAATAGAAATT--AAA-AAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGC
*
8817346 AATATAAGTTGATTTT
63 AATATGAGTTGATTTT
* * * * ** *
8817362 TTTTATAAACAAAAATTAAAAAATACCTCGATATGTGACTCGAGGCTCAACTCACCTCTCGCAAT
1 TTTGAAAAATAGAAATTAAAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAAT
8817427 ATGAGTTGA--TT
66 ATGAGTTGATTTT
** * **
8817438 TTTG-AAAA-A-AAATTAAAAAATACCTCAACATGCGAATCGAGGCTCAACTCACCTCTCGCAAT
1 TTTGAAAAATAGAAATTAAAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAAT
8817500 ATGAGTTGATTTT
66 ATGAGTTGATTTT
8817513 TTTGAAAAAT
1 TTTGAAAAAT
8817523 TTGAAATTGA
Statistics
Matches: 284, Mismatches: 28, Indels: 21
0.85 0.08 0.06
Matches are distributed among these distances:
73 58 0.20
74 1 0.00
75 9 0.03
76 23 0.08
77 2 0.01
78 54 0.19
79 47 0.17
80 2 0.01
81 85 0.30
82 3 0.01
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (78 bp):
TTTGAAAAATAGAAATTAAAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTGATTTT
Found at i:8817521 original size:73 final size:74
Alignment explanation
Indices: 8817155--8817521 Score: 378
Period size: 73 Copynumber: 4.8 Consensus size: 74
8817145 AATACCTTGG
* * * **
8817155 CATGTAACCCGAGGCTCAACTTATCTCTCGCAATATGAGTTGATTTTTGAAAAGTAGAAATTTAA
1 CATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAA--A-AAA-TTAA
*
8817220 AAAAAGTACCTCAG
62 AAAAA-TACCTCAA
* *
8817234 CATGTGACCCGAGGCTCAACTCACCTCCCGCAATATAAGTTGATTTTTTTGAAAAATAGAAATTA
1 CATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT---AAA-A-AAATT-
**
8817299 AAAAGAAATACCTCGG
60 AAAA-AAATACCTCAA
* *
8817315 CATGTGACCCGAGGCTCAACTCACCTTTCGCAATATAAGTTGATTTTTTTTATAAACAAAAATT-
1 CATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTT-T-AA-AAAAATTA
*
8817379 AAAAAATACCTCGA
61 AAAAAATACCTCAA
* * **
8817393 TATGTGACTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAAATT-AAAAA
1 CATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAAAATTAAAAAA
8817457 ATACCTCAA
66 ATACCTCAA
* ** *
8817466 CATGCGAATCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAA
1 CATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAAA
8817522 TTTGAAATTG
Statistics
Matches: 255, Mismatches: 24, Indels: 24
0.84 0.08 0.08
Matches are distributed among these distances:
73 70 0.27
74 2 0.01
76 5 0.02
78 49 0.19
79 46 0.18
80 2 0.01
81 63 0.25
82 10 0.04
83 7 0.03
84 1 0.00
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (74 bp):
CATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAAAATTAAAAAA
ATACCTCAA
Found at i:8829169 original size:30 final size:30
Alignment explanation
Indices: 8829135--8829200 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 30
8829125 TTTCGGGCTC
8829135 ATTGGGCTA-AAGTTCGGGTTTAGGTATTGT
1 ATTGGGCTAGAA-TTCGGGTTTAGGTATTGT
*
8829165 ATTGGGCTAGAATTTGGGTTTAGGTATTGT
1 ATTGGGCTAGAATTCGGGTTTAGGTATTGT
8829195 ATTGGG
1 ATTGGG
8829201 TATTAGATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
30 32 0.94
31 2 0.06
ACGTcount: A:0.20, C:0.05, G:0.35, T:0.41
Consensus pattern (30 bp):
ATTGGGCTAGAATTCGGGTTTAGGTATTGT
Found at i:8830581 original size:18 final size:18
Alignment explanation
Indices: 8830546--8830705 Score: 68
Period size: 18 Copynumber: 9.1 Consensus size: 18
8830536 AGTGATCCGA
*
8830546 TTAAAACACGAGATTTTT
1 TTAAAACACGAGAATTTT
*
8830564 TTAAAACACTAGAA--TT
1 TTAAAACACGAGAATTTT
* * *
8830580 TTGAAACAAGATAATAATTT
1 TTAAAACACGAGAAT--TTT
*
8830600 TTGAAAACACGA-AAATTT
1 TT-AAAACACGAGAATTTT
* * * *
8830618 GTGAAACACGGGAATTGT
1 TTAAAACACGAGAATTTT
* * *
8830636 TGAAAACACCA-AA-ATT
1 TTAAAACACGAGAATTTT
* *
8830652 TTAGAAACACCAAAATTTT
1 TTA-AAACACGAGAATTTT
*
8830671 TGAAAACACGA-AGA-TTT
1 TTAAAACACGAGA-ATTTT
8830688 TTAAAACAC-A-AATTTT
1 TTAAAACACGAGAATTTT
8830704 TT
1 TT
8830706 TTAAGAAACA
Statistics
Matches: 105, Mismatches: 26, Indels: 24
0.68 0.17 0.15
Matches are distributed among these distances:
15 1 0.01
16 22 0.21
17 29 0.28
18 36 0.34
19 4 0.04
20 6 0.06
21 7 0.07
ACGTcount: A:0.46, C:0.12, G:0.11, T:0.31
Consensus pattern (18 bp):
TTAAAACACGAGAATTTT
Found at i:8830706 original size:35 final size:35
Alignment explanation
Indices: 8830595--8830705 Score: 111
Period size: 35 Copynumber: 3.2 Consensus size: 35
8830585 ACAAGATAAT
* ***
8830595 AATTTTTGAAAACACGAAAATTTGT-GAAACACGGG
1 AATTTTTGAAAACACCAAAATTT-TAGAAACACCAA
*
8830630 AATTGTTGAAAACACCAAAATTTTAGAAACACCAA
1 AATTTTTGAAAACACCAAAATTTTAGAAACACCAA
* *
8830665 AATTTTTGAAAACACGAAGATTTTTA-AAACA-CAA
1 AATTTTTGAAAACACCAA-AATTTTAGAAACACCAA
*
8830699 ATTTTTT
1 AATTTTT
8830706 TTAAGAAACA
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
34 10 0.15
35 49 0.75
36 6 0.09
ACGTcount: A:0.46, C:0.13, G:0.12, T:0.30
Consensus pattern (35 bp):
AATTTTTGAAAACACCAAAATTTTAGAAACACCAA
Found at i:8830722 original size:55 final size:55
Alignment explanation
Indices: 8830650--8830760 Score: 152
Period size: 55 Copynumber: 2.0 Consensus size: 55
8830640 AACACCAAAA
* * * *
8830650 TTTTAGAAACACCAAAATTTTTGAAAACACGAAGATTT-TTAAAACACAAATTTT
1 TTTTAGAAACACAAAAATTTGTAAAAACACGAAGATTTGTGAAAACACAAATTTT
* *
8830704 TTTTAAGAAACACAAAAATTTGTAAAAACACGAAGATTTGTGAACACACGAATTTT
1 TTTT-AGAAACACAAAAATTTGTAAAAACACGAAGATTTGTGAAAACACAAATTTT
8830760 T
1 T
8830761 CAATTTTTCT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
54 4 0.08
55 31 0.63
56 14 0.29
ACGTcount: A:0.46, C:0.13, G:0.10, T:0.32
Consensus pattern (55 bp):
TTTTAGAAACACAAAAATTTGTAAAAACACGAAGATTTGTGAAAACACAAATTTT
Found at i:8830742 original size:18 final size:18
Alignment explanation
Indices: 8830603--8830755 Score: 82
Period size: 18 Copynumber: 8.6 Consensus size: 18
8830593 ATAATTTTTG
8830603 AAAACACGAAAATTTGT-
1 AAAACACGAAAATTTGTA
* ** *
8830620 GAAACACGGGAA-TTGTTG
1 AAAACACGAAAATTTG-TA
*
8830638 AAAACACCAAAATTT-TA
1 AAAACACGAAAATTTGTA
* * * *
8830655 GAAACACCAAAATTTTTG
1 AAAACACGAAAATTTGTA
* *
8830673 AAAACACGAAGATTT-TT
1 AAAACACGAAAATTTGTA
* *
8830690 AAAACAC-AAATTTTTTTTA
1 AAAACACGAAA--ATTTGTA
*
8830709 AGAAACACAAAAATTTGTA
1 A-AAACACGAAAATTTGTA
* *
8830728 AAAACACGAAGATTTGTG
1 AAAACACGAAAATTTGTA
*
8830746 AACACACGAA
1 AAAACACGAA
8830756 TTTTTCAATT
Statistics
Matches: 104, Mismatches: 23, Indels: 17
0.72 0.16 0.12
Matches are distributed among these distances:
16 5 0.05
17 33 0.32
18 47 0.45
19 10 0.10
20 6 0.06
21 3 0.03
ACGTcount: A:0.49, C:0.14, G:0.12, T:0.25
Consensus pattern (18 bp):
AAAACACGAAAATTTGTA
Found at i:8830934 original size:28 final size:28
Alignment explanation
Indices: 8830881--8830934 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
8830871 TGATTCTATT
* *
8830881 AAAACACGAGAAATTTTTATTTTTTTTA
1 AAAACACGAGAAATTTTTAATATTTTTA
8830909 AAAACACGAG-AATTTTTGAATATTTT
1 AAAACACGAGAAATTTTT-AATATTTT
8830935 CGGTTTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 7 0.30
28 16 0.70
ACGTcount: A:0.41, C:0.07, G:0.09, T:0.43
Consensus pattern (28 bp):
AAAACACGAGAAATTTTTAATATTTTTA
Found at i:8831360 original size:6 final size:6
Alignment explanation
Indices: 8831351--8831381 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
8831341 ATTTTTTATT
8831351 TTTTTC -TTTTC TTTTTC TTTTTC TTTTTC TT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TT
8831382 CTTCGGGTCG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.21
6 19 0.79
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTC
Found at i:8831544 original size:26 final size:26
Alignment explanation
Indices: 8831502--8831558 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
8831492 CTCCCCCTCT
*
8831502 CTTT-TCTCTTCTCTTCTC-CTTTTC
1 CTTTCTCTCTTCTCTTCTCTCATTTC
* *
8831526 ACTTTCTCTCTTTTTTTCTCTCATTTC
1 -CTTTCTCTCTTCTCTTCTCTCATTTC
8831553 CTTTCT
1 CTTTCT
8831559 TTTTCTTTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 4 0.15
26 18 0.67
27 5 0.19
ACGTcount: A:0.04, C:0.33, G:0.00, T:0.63
Consensus pattern (26 bp):
CTTTCTCTCTTCTCTTCTCTCATTTC
Found at i:8831957 original size:22 final size:22
Alignment explanation
Indices: 8831904--8831958 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
8831894 AATCCCCATT
* *
8831904 TTCTTTCTC-TTCAATTTTTTC
1 TTCTTACTCTTTCAATTTTGTC
* *
8831925 TTTTTAATCTTTCAATTTTGTC
1 TTCTTACTCTTTCAATTTTGTC
*
8831947 TTCTTCCTCTTT
1 TTCTTACTCTTT
8831959 GTTTTCAGGT
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 6 0.23
22 20 0.77
ACGTcount: A:0.11, C:0.22, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTACTCTTTCAATTTTGTC
Found at i:8832256 original size:16 final size:16
Alignment explanation
Indices: 8832232--8832264 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
8832222 AGGGCTAAAA
8832232 TGTAATTTATATTTTT
1 TGTAATTTATATTTTT
*
8832248 TGTATTTTATATTTTT
1 TGTAATTTATATTTTT
8832264 T
1 T
8832265 TTCAAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.73
Consensus pattern (16 bp):
TGTAATTTATATTTTT
Found at i:8833240 original size:194 final size:194
Alignment explanation
Indices: 8832899--8833291 Score: 560
Period size: 194 Copynumber: 2.0 Consensus size: 194
8832889 AAAATATGAG
*
8832899 AAAAACTAAAAACAGATGTCACATGGCTGTGTGGCCAGATCGTGTGACAGAGGTCAGCCCGTGTG
1 AAAAACTAAAAACAGATGTCACAAGGCTGTGTGGCCAGATCGTGTGACAGAGGTCAGCCCGTGTG
* * *
8832964 GCCCCAAGCATGGTCGTGTGGCTACTTCACATGCCCGTGTGCTTAAACTATGTACAAATTGAAAA
66 GCCCCAAGCATGGTCGTGTGGCTACTTCACACGCCCGTATGCTTAAACTATGTACAAATCGAAAA
* * *
8833029 TAGGCTCACACGGTCATGT-CCTCAAGTCGTGTAACTAATTGTGC-C-TATGTGAAAAATCCTGC
131 TAGGCTCACACGGTCATGTCCCCCAA-CCGTGTAACTAATTATGCTCGTA--TGAAAAATCCTGC
8833091 AC
193 AC
* * * * * *
8833093 AAAAACTGAAAATAGATGTCTCAAGGCTGTTTGGTCAG-GCTGTGTGACAGAGGTCAGCCCGTGT
1 AAAAACTAAAAACAGATGTCACAAGGCTGTGTGGCCAGATC-GTGTGACAGAGGTCAGCCCGTGT
* * *
8833157 GGCCCCAAGCATGGTCGTGTGGCTACTTCACACGCCTGTATGCTTAGACTGTGTACAAATCGAAA
65 GGCCCCAAGCATGGTCGTGTGGCTACTTCACACGCCCGTATGCTTAAACTATGTACAAATCGAAA
* *
8833222 ATAGGGTCACATGGTCATGTCCCCCAACCGTGTAACTAATTATGCTCGTATGAAAAATCCTGCAC
130 ATAGGCTCACACGGTCATGTCCCCCAACCGTGTAACTAATTATGCTCGTATGAAAAATCCTGCAC
8833287 AAAAA
1 AAAAA
8833292 AAATCAAGCA
Statistics
Matches: 177, Mismatches: 18, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
193 1 0.01
194 168 0.95
195 6 0.03
196 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.25
Consensus pattern (194 bp):
AAAAACTAAAAACAGATGTCACAAGGCTGTGTGGCCAGATCGTGTGACAGAGGTCAGCCCGTGTG
GCCCCAAGCATGGTCGTGTGGCTACTTCACACGCCCGTATGCTTAAACTATGTACAAATCGAAAA
TAGGCTCACACGGTCATGTCCCCCAACCGTGTAACTAATTATGCTCGTATGAAAAATCCTGCAC
Found at i:8837375 original size:13 final size:14
Alignment explanation
Indices: 8837351--8837436 Score: 58
Period size: 13 Copynumber: 6.5 Consensus size: 14
8837341 TCATACATCT
8837351 ATTTCCATATAACCA
1 ATTT-CATATAACCA
8837366 ATTT-ATATAACC-
1 ATTTCATATAACCA
* *
8837378 ATTTCATGTAATC-
1 ATTTCATATAACCA
*
8837391 ATTTCATATAA-CT
1 ATTTCATATAACCA
**
8837404 ATTTTGTATAACC-
1 ATTTCATATAACCA
* *
8837417 ATTTCATTTAAAC-
1 ATTTCATATAACCA
8837430 ATTTCAT
1 ATTTCAT
8837437 TTTACCACTT
Statistics
Matches: 59, Mismatches: 9, Indels: 8
0.78 0.12 0.11
Matches are distributed among these distances:
12 5 0.08
13 49 0.83
14 1 0.02
15 4 0.07
ACGTcount: A:0.36, C:0.17, G:0.02, T:0.44
Consensus pattern (14 bp):
ATTTCATATAACCA
Found at i:8837400 original size:26 final size:26
Alignment explanation
Indices: 8837351--8837436 Score: 84
Period size: 26 Copynumber: 3.3 Consensus size: 26
8837341 TCATACATCT
8837351 ATTTCCATATAACCAATTT-ATATAACC
1 ATTT-CATATAACC-ATTTCATATAACC
* * *
8837378 ATTTCATGTAATCATTTCATATAACT
1 ATTTCATATAACCATTTCATATAACC
** * *
8837404 ATTTTGTATAACCATTTCATTTAAAC
1 ATTTCATATAACCATTTCATATAACC
8837430 ATTTCAT
1 ATTTCAT
8837437 TTTACCACTT
Statistics
Matches: 46, Mismatches: 12, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
25 4 0.09
26 38 0.83
27 4 0.09
ACGTcount: A:0.36, C:0.17, G:0.02, T:0.44
Consensus pattern (26 bp):
ATTTCATATAACCATTTCATATAACC
Found at i:8837414 original size:39 final size:39
Alignment explanation
Indices: 8837351--8837436 Score: 118
Period size: 39 Copynumber: 2.2 Consensus size: 39
8837341 TCATACATCT
*
8837351 ATTTCCATATAACCAATTTATATAACCATTTCATGTAATC
1 ATTT-CATATAACCAATTTATATAACCATTTCATGTAAAC
* * * *
8837391 ATTTCATATAACTATTTTGTATAACCATTTCATTTAAAC
1 ATTTCATATAACCAATTTATATAACCATTTCATGTAAAC
8837430 ATTTCAT
1 ATTTCAT
8837437 TTTACCACTT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 37 0.90
40 4 0.10
ACGTcount: A:0.36, C:0.17, G:0.02, T:0.44
Consensus pattern (39 bp):
ATTTCATATAACCAATTTATATAACCATTTCATGTAAAC
Found at i:8837437 original size:13 final size:13
Alignment explanation
Indices: 8837416--8837459 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
8837406 TTTGTATAAC
8837416 CATTTCATTTAAA
1 CATTTCATTTAAA
* *
8837429 CATTTCATTTTAC
1 CATTTCATTTAAA
* *
8837442 CACTTCATTTACA
1 CATTTCATTTAAA
8837455 CATTT
1 CATTT
8837460 AACACATTAT
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.00, T:0.48
Consensus pattern (13 bp):
CATTTCATTTAAA
Found at i:8844189 original size:167 final size:162
Alignment explanation
Indices: 8843886--8844216 Score: 617
Period size: 167 Copynumber: 2.0 Consensus size: 162
8843876 AATTAAGAAA
8843886 AAGAGTTAAGTTCAGGTACTAAATTGAATCCAAAAGGTTTAAGTATCAACTTAGAAAAAGTATCA
1 AAGAGTTAAGTTCAGGTACTAAATTGAATCCAAAAGGTTTAAGTATCAACTTAGAAAAAGTATCA
8843951 AGTTTAGGTTTAAATTAGAAAAAAGTGACAAGTTCAAATACAAATGTTATATTAGCGCTATTTAA
66 AGTTTAGGTTTAAATTAGAAAAAAGTGACAAGTTCAAATACAAATGTTATATTAGCGCTATTTAA
8844016 TTGGAGGATATATATATTATATTTGAAAGTGC
131 TTGGAGGATATATATATTATATTTGAAAGTGC
8844048 AAGAGTTAAGTTCAGGTACTAAATTGAATCCCCAAAAGGTTTAAGTATCAACTTAAGAAAAAGTA
1 AAGAGTTAAGTTCAGGTACTAAATTGAAT--CCAAAAGGTTTAAGTATCAACTT-AGAAAAAGTA
8844113 TCAAGTTTAGGTATTAAATTAGAAAAAAGTGACAAGTTCAAATACCAAATGTTATATTAGCGCTA
63 TCAAGTTTAGGT-TTAAATTAGAAAAAAGTGACAAGTTCAAATA-CAAATGTTATATTAGCGCTA
8844178 TTTAATTGGAGGATATATATATTATATTTGAAAGTGC
126 TTTAATTGGAGGATATATATATTATATTTGAAAGTGC
8844215 AA
1 AA
8844217 TCGAACTTTT
Statistics
Matches: 164, Mismatches: 0, Indels: 5
0.97 0.00 0.03
Matches are distributed among these distances:
162 29 0.18
164 23 0.14
165 22 0.13
166 31 0.19
167 59 0.36
ACGTcount: A:0.42, C:0.09, G:0.17, T:0.32
Consensus pattern (162 bp):
AAGAGTTAAGTTCAGGTACTAAATTGAATCCAAAAGGTTTAAGTATCAACTTAGAAAAAGTATCA
AGTTTAGGTTTAAATTAGAAAAAAGTGACAAGTTCAAATACAAATGTTATATTAGCGCTATTTAA
TTGGAGGATATATATATTATATTTGAAAGTGC
Found at i:8849293 original size:27 final size:29
Alignment explanation
Indices: 8849262--8849323 Score: 76
Period size: 27 Copynumber: 2.2 Consensus size: 29
8849252 TTACTACCCA
8849262 AAAAAACT-TAATAAA-ATTT-TAAAAATT
1 AAAAAA-TATAATAAATATTTGTAAAAATT
* *
8849289 AAAAAATATAATAAATTTTTGTAAAAGTT
1 AAAAAATATAATAAATATTTGTAAAAATT
8849318 AAAAAA
1 AAAAAA
8849324 AACATATAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 1 0.03
27 13 0.43
28 3 0.10
29 13 0.43
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (29 bp):
AAAAAATATAATAAATATTTGTAAAAATT
Found at i:8850834 original size:130 final size:132
Alignment explanation
Indices: 8850679--8850940 Score: 510
Period size: 132 Copynumber: 2.0 Consensus size: 132
8850669 TTTAATTGTA
8850679 CTTGAGTTGCGTCTTTCTATTTTGATTAATTTATTCC-TATCTATATTTCTCAATAGATTTATTT
1 CTTGAGTTGCGTCTTTCTATTTTGATTAATTTATTCCATATCTATATTTCTCAATAGATTTATTT
8850743 AAGAT-CTCATTTTATTTCATTATTTCAATAATAATATTGCATGCAAAATCATTGTCGACCATTT
66 AAGATCCTCATTTTATTTCATTATTTCAATAATAATATTGCATGCAAAATCATTGTCGACCATTT
8850807 TT
131 TT
8850809 CTTGAGTTGCGTCTTTCTATTTTGATTAATTTATTCCATATCTATATTTCTCAATAGATTTATTT
1 CTTGAGTTGCGTCTTTCTATTTTGATTAATTTATTCCATATCTATATTTCTCAATAGATTTATTT
8850874 AAGATCCTCATTTTATTTCATTATTTCAATAATAATATTGCATGCAAAATCATTGTCGACCATTT
66 AAGATCCTCATTTTATTTCATTATTTCAATAATAATATTGCATGCAAAATCATTGTCGACCATTT
8850939 TT
131 TT
8850941 ATTATTCGGT
Statistics
Matches: 130, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
130 37 0.28
131 32 0.25
132 61 0.47
ACGTcount: A:0.28, C:0.15, G:0.08, T:0.49
Consensus pattern (132 bp):
CTTGAGTTGCGTCTTTCTATTTTGATTAATTTATTCCATATCTATATTTCTCAATAGATTTATTT
AAGATCCTCATTTTATTTCATTATTTCAATAATAATATTGCATGCAAAATCATTGTCGACCATTT
TT
Found at i:8855735 original size:16 final size:17
Alignment explanation
Indices: 8855703--8855737 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
8855693 AATTTAGTTG
8855703 AAGTATAAACGATGTAT
1 AAGTATAAACGATGTAT
*
8855720 AAGTATATAC-ATGTAT
1 AAGTATAAACGATGTAT
8855736 AA
1 AA
8855738 ATTATTAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.49, C:0.06, G:0.14, T:0.31
Consensus pattern (17 bp):
AAGTATAAACGATGTAT
Found at i:8856444 original size:41 final size:41
Alignment explanation
Indices: 8856383--8856708 Score: 444
Period size: 41 Copynumber: 8.0 Consensus size: 41
8856373 TGAAAATAAG
* *
8856383 ATGTTTCAGACTTTACGTCTAGCAGGCTT-GATGCCGGTGAA
1 ATGTATCAGACTTTATGTCTAGCAGGCTTAG-TGCCGGTGAA
*
8856424 TTGCT-TCAGACTTTATGTCTAGCAGGCTTAGTGCCGGTGAA
1 ATG-TATCAGACTTTATGTCTAGCAGGCTTAGTGCCGGTGAA
*
8856465 ATGTATCAGACTTTATGTCTAGAAGGCTTAGTGCCGGTGAA
1 ATGTATCAGACTTTATGTCTAGCAGGCTTAGTGCCGGTGAA
8856506 ATGTATCAGACTTTATGTCTAGCAGGCTTAGTGCCGGTGAA
1 ATGTATCAGACTTTATGTCTAGCAGGCTTAGTGCCGGTGAA
*
8856547 ATGCT-TCAGACTTTATGTCTAGCAGACTTAGTGCCGGTGAA
1 ATG-TATCAGACTTTATGTCTAGCAGGCTTAGTGCCGGTGAA
* * *
8856588 ATGTATCAGACTTTATGTCTAACAGGCTTTGTGCCGATGAA
1 ATGTATCAGACTTTATGTCTAGCAGGCTTAGTGCCGGTGAA
* * * *
8856629 ATGTATCAGAATTTATGTCTAGCAGGCTTTGTGCCGGCGGA
1 ATGTATCAGACTTTATGTCTAGCAGGCTTAGTGCCGGTGAA
* * * *
8856670 ATGTATCGGGCTTTGTGCCTAGCAGGCTTTA-TGCCGGTG
1 ATGTATCAGACTTTATGTCTAGCAGGC-TTAGTGCCGGTG
8856709 TTTTATACAG
Statistics
Matches: 257, Mismatches: 22, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
40 2 0.01
41 250 0.97
42 5 0.02
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (41 bp):
ATGTATCAGACTTTATGTCTAGCAGGCTTAGTGCCGGTGAA
Found at i:8860876 original size:20 final size:20
Alignment explanation
Indices: 8860851--8860890 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
8860841 ACAATTTAAA
*
8860851 ATATAAATTTATTAATATAT
1 ATATAAATGTATTAATATAT
*
8860871 ATATAAATGTATTAGTATAT
1 ATATAAATGTATTAATATAT
8860891 GTAAAAACAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (20 bp):
ATATAAATGTATTAATATAT
Found at i:8861016 original size:20 final size:19
Alignment explanation
Indices: 8860971--8861008 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
8860961 CGTCCAAACA
8860971 CCAGAAAAGTAAATCATTT
1 CCAGAAAAGTAAATCATTT
8860990 CCAGAAAAGTAAATCATTT
1 CCAGAAAAGTAAATCATTT
8861009 TTCAGAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.26
Consensus pattern (19 bp):
CCAGAAAAGTAAATCATTT
Found at i:8861235 original size:14 final size:14
Alignment explanation
Indices: 8861216--8861247 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
8861206 GAATCTTCTA
8861216 GTTCTTTAATGAAT
1 GTTCTTTAATGAAT
8861230 GTTCTTTAATGAAT
1 GTTCTTTAATGAAT
8861244 GTTC
1 GTTC
8861248 ATATAAATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.25, C:0.09, G:0.16, T:0.50
Consensus pattern (14 bp):
GTTCTTTAATGAAT
Found at i:8862031 original size:23 final size:23
Alignment explanation
Indices: 8861975--8862019 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
8861965 GTTTTAGTAC
8861975 CAAATAAGATAAATATTTTCTAA
1 CAAATAAGATAAATATTTTCTAA
8861998 CAAATAAGATAAATATTTTCTA
1 CAAATAAGATAAATATTTTCTA
8862020 TCTATAATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.51, C:0.09, G:0.04, T:0.36
Consensus pattern (23 bp):
CAAATAAGATAAATATTTTCTAA
Found at i:8864649 original size:26 final size:25
Alignment explanation
Indices: 8864620--8864669 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
8864610 AAATTAATAC
* * *
8864620 TTTATGTATCAAATTAAAATAAAAAA
1 TTTAAGTACCAAAATAAAA-AAAAAA
8864646 TTTAAGTACCAAAATAAAAAAAAA
1 TTTAAGTACCAAAATAAAAAAAAA
8864670 TTGAGTGTAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 5 0.24
26 16 0.76
ACGTcount: A:0.62, C:0.06, G:0.04, T:0.28
Consensus pattern (25 bp):
TTTAAGTACCAAAATAAAAAAAAAA
Found at i:8868497 original size:27 final size:27
Alignment explanation
Indices: 8868467--8868519 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
8868457 AATATCAATA
*
8868467 AATAATTTAAAAATTATAAAAAAATTT
1 AATAATTTAAAAAGTATAAAAAAATTT
* *
8868494 AATAATTTGAAAAGTATATAAAAATT
1 AATAATTTAAAAAGTATAAAAAAATT
8868520 CAAAAACATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (27 bp):
AATAATTTAAAAAGTATAAAAAAATTT
Found at i:8877456 original size:26 final size:26
Alignment explanation
Indices: 8877420--8877472 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
8877410 AGGAGCAAGA
8877420 TATGATAATGTATCTTGAGAATCCAC
1 TATGATAATGTATCTTGAGAATCCAC
8877446 TATGATAATGTATCTTGAGAATCCAC
1 TATGATAATGTATCTTGAGAATCCAC
8877472 T
1 T
8877473 CTTTTGGCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (26 bp):
TATGATAATGTATCTTGAGAATCCAC
Found at i:8878959 original size:4 final size:4
Alignment explanation
Indices: 8878950--8878982 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
8878940 TCCACAATTC
8878950 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT T
1 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT T
8878983 TCTCTCTCCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TCTT
Found at i:8882730 original size:37 final size:37
Alignment explanation
Indices: 8882689--8882814 Score: 114
Period size: 37 Copynumber: 3.4 Consensus size: 37
8882679 AGGAATGAGG
8882689 GAACATAAAAGAAGAAGAAAAAAAAAGAAAGTTAAAA
1 GAACATAAAAGAAGAAGAAAAAAAAAGAAAGTTAAAA
* *** ** *
8882726 GAACATAAAAG-AGAGAGAGAAGGGAAGAAAACT-AGA
1 GAACATAAAAGAAGA-AGAAAAAAAAAGAAAGTTAAAA
*
8882762 GAAGCATAAAAGAATGAA-AAATAAAATAAAAAAGTTAAAA
1 GAA-CATAAAAGAA-GAAGAAA-AAAA-AAGAAAGTTAAAA
8882802 GAACATAAAAGAA
1 GAACATAAAAGAA
8882815 AAAAATTAAG
Statistics
Matches: 67, Mismatches: 15, Indels: 12
0.71 0.16 0.13
Matches are distributed among these distances:
36 8 0.12
37 33 0.49
38 3 0.04
39 18 0.27
40 5 0.07
ACGTcount: A:0.67, C:0.04, G:0.19, T:0.10
Consensus pattern (37 bp):
GAACATAAAAGAAGAAGAAAAAAAAAGAAAGTTAAAA
Found at i:8893948 original size:13 final size:13
Alignment explanation
Indices: 8893932--8893990 Score: 73
Period size: 13 Copynumber: 4.5 Consensus size: 13
8893922 CATTGCTTTT
8893932 GAAAAGTGCTGTG
1 GAAAAGTGCTGTG
8893945 GAAAAGTGCTGTG
1 GAAAAGTGCTGTG
* *
8893958 GAAAAGTGCTTTT
1 GAAAAGTGCTGTG
* * *
8893971 GAGAAGTGCTTTT
1 GAAAAGTGCTGTG
8893984 GAAAAGT
1 GAAAAGT
8893991 TTGGTTTAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 42 1.00
ACGTcount: A:0.32, C:0.07, G:0.32, T:0.29
Consensus pattern (13 bp):
GAAAAGTGCTGTG
Found at i:8894314 original size:33 final size:34
Alignment explanation
Indices: 8894260--8894325 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 34
8894250 ATTATATTTT
* *
8894260 AAATATTTAAATATTTGTAATTAGTATTTTTAAA
1 AAATATTTAAATATTTGTAATTAATAATTTTAAA
* *
8894294 AAATATTT-TATATTTTTAATTAATAATTTTAA
1 AAATATTTAAATATTTGTAATTAATAATTTTAA
8894326 CACAATTGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 20 0.71
34 8 0.29
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (34 bp):
AAATATTTAAATATTTGTAATTAATAATTTTAAA
Found at i:8894318 original size:20 final size:21
Alignment explanation
Indices: 8894284--8894324 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
8894274 TTGTAATTAG
8894284 TATTTTTAAAAAAT-ATTTTA
1 TATTTTTAAAAAATAATTTTA
**
8894304 TATTTTTAATTAATAATTTTA
1 TATTTTTAAAAAATAATTTTA
8894325 ACACAATTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TATTTTTAAAAAATAATTTTA
Found at i:8894492 original size:12 final size:13
Alignment explanation
Indices: 8894458--8894493 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
8894448 TTTTCAACTC
*
8894458 CTTTTCAAAAATA
1 CTTTTCAAAAACA
8894471 CTTTTCAAAAACA
1 CTTTTCAAAAACA
8894484 CTTTT-AAAAA
1 CTTTTCAAAAA
8894494 GTTAAAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 5 0.23
13 17 0.77
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.36
Consensus pattern (13 bp):
CTTTTCAAAAACA
Found at i:8905802 original size:15 final size:15
Alignment explanation
Indices: 8905778--8905821 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
8905768 ATCCTATTAG
*
8905778 ACACAACACTATCAA
1 ACACATCACTATCAA
* * *
8905793 ATACATCACTAACAT
1 ACACATCACTATCAA
8905808 ACACATCACTATCA
1 ACACATCACTATCA
8905822 GACATTTCTT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.48, C:0.32, G:0.00, T:0.20
Consensus pattern (15 bp):
ACACATCACTATCAA
Found at i:8906272 original size:14 final size:14
Alignment explanation
Indices: 8906234--8906272 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
8906224 TGCAAATGGA
*
8906234 AAACATATTTGAAT
1 AAACATATTTCAAT
*
8906248 ACACAATATTTCAAT
1 AAAC-ATATTTCAAT
8906263 AAACATATTT
1 AAACATATTT
8906273 AAAATACTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.49, C:0.13, G:0.03, T:0.36
Consensus pattern (14 bp):
AAACATATTTCAAT
Found at i:8907096 original size:30 final size:32
Alignment explanation
Indices: 8907029--8907100 Score: 82
Period size: 31 Copynumber: 2.3 Consensus size: 32
8907019 AAAATATTAA
8907029 TAAGTGACTGATTTGTCACTTTTTAATAACGT
1 TAAGTGACTGATTTGTCACTTTTTAATAACGT
*
8907061 T-AGTGACT-ATTTTGTTA-TTTTTCAA-AA-GT
1 TAAGTGACTGA-TTTGTCACTTTTT-AATAACGT
8907090 TAAGTGACTGA
1 TAAGTGACTGA
8907101 ATTGAAACTT
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
29 3 0.09
30 15 0.43
31 16 0.46
32 1 0.03
ACGTcount: A:0.29, C:0.10, G:0.17, T:0.44
Consensus pattern (32 bp):
TAAGTGACTGATTTGTCACTTTTTAATAACGT
Found at i:8913074 original size:6 final size:6
Alignment explanation
Indices: 8913059--8913098 Score: 71
Period size: 6 Copynumber: 6.7 Consensus size: 6
8913049 AAATTAATTC
*
8913059 GTGCAT GTGCAA GTGCAA GTGCAA GTGCAA GTGCAA GTGC
1 GTGCAA GTGCAA GTGCAA GTGCAA GTGCAA GTGCAA GTGC
8913099 GGCTGCTTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.28, C:0.17, G:0.35, T:0.20
Consensus pattern (6 bp):
GTGCAA
Found at i:8925581 original size:18 final size:15
Alignment explanation
Indices: 8925546--8925574 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8925536 TCATGCCAGT
8925546 TTTTAACAAAAAAAA
1 TTTTAACAAAAAAAA
8925561 TTTTAACAAAAAAA
1 TTTTAACAAAAAAA
8925575 TCAATTTACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.28
Consensus pattern (15 bp):
TTTTAACAAAAAAAA
Found at i:8937479 original size:19 final size:18
Alignment explanation
Indices: 8937428--8937483 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 18
8937418 TGAAAATAAA
8937428 TATAATTG-TAATAATTT
1 TATAATTGTTAATAATTT
*
8937445 T-TAATCAT-TTATTAATTT
1 TATAAT--TGTTAATAATTT
8937463 TATAATTGTTAAATAATTT
1 TATAATTGTT-AATAATTT
8937482 TA
1 TA
8937484 AAAATTTCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
16 4 0.13
17 2 0.06
18 12 0.39
19 13 0.42
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (18 bp):
TATAATTGTTAATAATTT
Found at i:8937621 original size:21 final size:21
Alignment explanation
Indices: 8937597--8937646 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
8937587 CGCTGTTTCT
*
8937597 AATCTCACTGCTACAGTACCC
1 AATCTCACTGCTACAGTAACC
*
8937618 AATCTCACTGCTACAGTAACT
1 AATCTCACTGCTACAGTAACC
8937639 AATCTCAC
1 AATCTCAC
8937647 CGCCACCGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.32, C:0.34, G:0.08, T:0.26
Consensus pattern (21 bp):
AATCTCACTGCTACAGTAACC
Found at i:8941355 original size:21 final size:20
Alignment explanation
Indices: 8941329--8941372 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 20
8941319 AAGTTGTGAG
8941329 TGACAGGAAATTGACAATGAA
1 TGACAGGAAATTGAC-ATGAA
*
8941350 TGACAGGGAATTGACATGAA
1 TGACAGGAAATTGACATGAA
8941370 TGA
1 TGA
8941373 TTTTATTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.43, C:0.09, G:0.27, T:0.20
Consensus pattern (20 bp):
TGACAGGAAATTGACATGAA
Found at i:8942381 original size:18 final size:17
Alignment explanation
Indices: 8942328--8942382 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 17
8942318 CAATCTTTCC
*
8942328 TTTTTCTTTATTTTTAT
1 TTTTTTTTTATTTTTAT
* * *
8942345 CGTTGTTTTTATTATTAT
1 -TTTTTTTTTATTTTTAT
8942363 TTTTTTTTTCATTTTTAT
1 TTTTTTTTT-ATTTTTAT
8942381 TT
1 TT
8942383 CTTAAACGAA
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
17 7 0.24
18 22 0.76
ACGTcount: A:0.13, C:0.05, G:0.04, T:0.78
Consensus pattern (17 bp):
TTTTTTTTTATTTTTAT
Found at i:8944664 original size:104 final size:104
Alignment explanation
Indices: 8944484--8944707 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
8944474 TGTATATAAA
** * *
8944484 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
8944549 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
8944588 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
8944652 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
8944692 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
8944708 GATATCCATT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:8944759 original size:71 final size:72
Alignment explanation
Indices: 8944626--8944777 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
8944616 TCATTGGTGG
* *
8944626 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
8944691 GAGGGGT
66 GAGGGGT
***
8944698 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
8944762 GAGGGGT
66 GAGGGGT
8944769 TGCTAAGTG
1 TGCTAAGTG
8944778 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:8952221 original size:104 final size:104
Alignment explanation
Indices: 8952041--8952264 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
8952031 TGTATATAAA
** * *
8952041 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
8952106 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
8952145 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
8952209 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
8952249 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
8952265 GATATCCATT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:8952316 original size:71 final size:72
Alignment explanation
Indices: 8952183--8952334 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
8952173 TCATTGGTGG
* *
8952183 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
8952248 GAGGGGT
66 GAGGGGT
***
8952255 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
8952319 GAGGGGT
66 GAGGGGT
8952326 TGCTAAGTG
1 TGCTAAGTG
8952335 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:8957187 original size:40 final size:40
Alignment explanation
Indices: 8957023--8957192 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
8957013 ATGTTTGGAT
* * * * *
8957023 AAAAAAGCCGTTAAAGATCAAGCATTAGCGGCGCTTTCT-
1 AAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTG
** *
8957062 AACAAACGCCGCTATAGATCGAGCATTAGCGATGCTTCTTG
1 AA-AAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTG
* * * **
8957103 AAAAACGCCGCTATAGATC-ATGCATTAACAGCGATTTTCA
1 AAAAACGCCGCTATAGATCGA-GCATTAGCGGCGCTTTTTG
*
8957143 AAAAACGCCGCTATAGATCGAGCATTAGCGGCGGTTTTTG
1 AAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTG
*
8957183 AAAAATGCCG
1 AAAAACGCCG
8957193 TAAAAAAATT
Statistics
Matches: 105, Mismatches: 22, Indels: 7
0.78 0.16 0.05
Matches are distributed among these distances:
39 3 0.03
40 99 0.94
41 3 0.03
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.24
Consensus pattern (40 bp):
AAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTG
Found at i:8957360 original size:7 final size:7
Alignment explanation
Indices: 8957342--8957431 Score: 67
Period size: 7 Copynumber: 12.6 Consensus size: 7
8957332 AAGTTACTAT
*
8957342 TTTAAGG
1 TTTATGG
8957349 TTTATGG
1 TTTATGG
*
8957356 ATTATGGG
1 TTTAT-GG
8957364 TTTA-GAG
1 TTTATG-G
*
8957371 ATTATGG
1 TTTATGG
8957378 TTTATGG
1 TTTATGG
8957385 TTTATGG
1 TTTATGG
8957392 TTTATAGG
1 TTTAT-GG
*
8957400 -TTAAGG
1 TTTATGG
*
8957406 ATTTATGT
1 -TTTATGG
*
8957414 TTTATGA
1 TTTATGG
*
8957421 TTTAGGG
1 TTTATGG
8957428 TTTA
1 TTTA
8957432 GAGGTTAGGG
Statistics
Matches: 66, Mismatches: 11, Indels: 12
0.74 0.12 0.13
Matches are distributed among these distances:
6 3 0.05
7 51 0.77
8 12 0.18
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (7 bp):
TTTATGG
Found at i:8957387 original size:36 final size:36
Alignment explanation
Indices: 8957342--8957438 Score: 97
Period size: 36 Copynumber: 2.7 Consensus size: 36
8957332 AAGTTACTAT
* * *
8957342 TTTAAGGTTTATGGATTATGGGTTTAGAGA-TTATGG
1 TTTATGGTTTATGGATTATAGGTTAAG-GATTTATGG
* *
8957378 TTTATGGTTTATGGTTTATAGGTTAAGGATTTATGT
1 TTTATGGTTTATGGATTATAGGTTAAGGATTTATGG
* * * *
8957414 TTTATGATTTAGGGTTTAGAGGTTA
1 TTTATGGTTTATGGATTATAGGTTA
8957439 GGGTTAGGGT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
35 2 0.04
36 50 0.96
ACGTcount: A:0.24, C:0.00, G:0.28, T:0.48
Consensus pattern (36 bp):
TTTATGGTTTATGGATTATAGGTTAAGGATTTATGG
Done.