Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60343961
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 596159 characters in sequence are not A, C, G, or T
File 32 of 204
Found at i:8957410 original size:29 final size:28
Alignment explanation
Indices: 8957343--8957425 Score: 94
Period size: 29 Copynumber: 2.9 Consensus size: 28
8957333 AGTTACTATT
*
8957343 TTAAGGTTTATGGATTATGGGTTTAGAGA
1 TTAAGGTTTATGGTTTAT-GGTTTAGAGA
* * *
8957372 TTATGGTTTATGGTTTATGGTTTATAGG
1 TTAAGGTTTATGGTTTATGGTTTAGAGA
* *
8957400 TTAAGGATTTATGTTTTATGATTTAG
1 TTAAGG-TTTATGGTTTATGGTTTAG
8957426 GGTTTAGAGG
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
28 13 0.29
29 32 0.71
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (28 bp):
TTAAGGTTTATGGTTTATGGTTTAGAGA
Found at i:8957432 original size:7 final size:7
Alignment explanation
Indices: 8957342--8957459 Score: 51
Period size: 7 Copynumber: 16.7 Consensus size: 7
8957332 AAGTTACTAT
*
8957342 TTTAAGG
1 TTTAGGG
*
8957349 TTTATGG
1 TTTAGGG
*
8957356 ATTATGGG
1 TTTA-GGG
*
8957364 TTTAGAG
1 TTTAGGG
* *
8957371 ATTATGG
1 TTTAGGG
*
8957378 TTTATGG
1 TTTAGGG
*
8957385 TTTATGG
1 TTTAGGG
*
8957392 TTTATAGG
1 TTTA-GGG
* *
8957400 TTAAGGA
1 TTTAGGG
* *
8957407 TTTATGT
1 TTTAGGG
* *
8957414 TTTATGA
1 TTTAGGG
8957421 TTTAGGG
1 TTTAGGG
8957428 TTTAGAGG
1 TTTAG-GG
8957436 -TTAGGG
1 TTTAGGG
8957442 -TTAGGG
1 TTTAGGG
8957448 TTTAGGG
1 TTTAGGG
*
8957455 GTTAG
1 TTTAG
8957460 ATTAATTAGT
Statistics
Matches: 87, Mismatches: 20, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
6 8 0.09
7 67 0.77
8 12 0.14
ACGTcount: A:0.22, C:0.00, G:0.32, T:0.46
Consensus pattern (7 bp):
TTTAGGG
Found at i:8957447 original size:20 final size:20
Alignment explanation
Indices: 8957422--8957459 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
8957412 GTTTTATGAT
8957422 TTAGGGTTTAGAGGTTAGGG
1 TTAGGGTTTAGAGGTTAGGG
*
8957442 TTAGGGTTTAGGGGTTAG
1 TTAGGGTTTAGAGGTTAG
8957460 ATTAATTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.00, G:0.45, T:0.37
Consensus pattern (20 bp):
TTAGGGTTTAGAGGTTAGGG
Found at i:8958219 original size:21 final size:20
Alignment explanation
Indices: 8958181--8958243 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 20
8958171 ATTCAATTTC
8958181 TCAATCC-AAT-ATA-CATT
1 TCAATCCAAATAATATCATT
8958198 TCAATACCACAATAAT-TCATT
1 TCAAT-CCA-AATAATATCATT
*
8958219 T-AATTCAAATAATATCATT
1 TCAATCCAAATAATATCATT
8958238 TGCAAT
1 T-CAAT
8958244 TTCCATTTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
17 5 0.14
18 8 0.22
19 8 0.22
20 6 0.16
21 10 0.27
ACGTcount: A:0.43, C:0.19, G:0.02, T:0.37
Consensus pattern (20 bp):
TCAATCCAAATAATATCATT
Found at i:8959806 original size:45 final size:45
Alignment explanation
Indices: 8959742--8959835 Score: 143
Period size: 45 Copynumber: 2.1 Consensus size: 45
8959732 AACAGATACT
* * *
8959742 CGGTGGATTCAGCACATAGCAACCGCCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
* *
8959787 CGGTGGAATCAGCACATAGCAACCATCTTACTAATCAATGATGTT
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
8959832 CGGT
1 CGGT
8959836 TCACATAGTA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:8959954 original size:50 final size:51
Alignment explanation
Indices: 8959832--8959968 Score: 161
Period size: 51 Copynumber: 2.7 Consensus size: 51
8959822 CAATGATGTT
* * *
8959832 CGGTTCACATAGTAGCCTGCACATAGTACTACACACGTGATCGAAACTATC
1 CGGTACACATAGTAGCCTGCACATAGTACTACACACGCGACCGAAACTATC
* * * * *
8959883 CGGTACGCATAGTATCCTGCACATAGTACTACACATGCGACC-TATC-ATTC
1 CGGTACACATAGTAGCCTGCACATAGTACTACACACGCGACCGAAACTA-TC
* *
8959933 CGGTACACGTAGTAGCCTGCACATAGTACTATACAC
1 CGGTACACATAGTAGCCTGCACATAGTACTACACAC
8959969 ATGACCATCA
Statistics
Matches: 72, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
49 1 0.01
50 35 0.49
51 36 0.50
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (51 bp):
CGGTACACATAGTAGCCTGCACATAGTACTACACACGCGACCGAAACTATC
Found at i:8963421 original size:47 final size:47
Alignment explanation
Indices: 8963355--8963485 Score: 154
Period size: 47 Copynumber: 2.8 Consensus size: 47
8963345 TTCATTATCT
* * * * * *
8963355 CTATCTCTTTGATTATCTTGAGACATGTTAAGGTTTTTAATATTTTA
1 CTATCTCTTTGTTTGTCTTGAAACATTTTAAGGTTTTAAATAATTTA
* *
8963402 CTCTCTCTTTGTTTGTCTTGAAACATTTTAAGATTTTAAATAATTTA
1 CTATCTCTTTGTTTGTCTTGAAACATTTTAAGGTTTTAAATAATTTA
* ** *
8963449 CTATCTCTTTATCAGTCTTGAAACATTTTAAAGTTTT
1 CTATCTCTTTGTTTGTCTTGAAACATTTTAAGGTTTT
8963486 CTTGAAATAT
Statistics
Matches: 70, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.27, C:0.13, G:0.10, T:0.50
Consensus pattern (47 bp):
CTATCTCTTTGTTTGTCTTGAAACATTTTAAGGTTTTAAATAATTTA
Found at i:8963594 original size:30 final size:30
Alignment explanation
Indices: 8963560--8963623 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
8963550 TGAGGTTTTT
*
8963560 AATAATTTACTATATCTTTGGTTGTCTTGG
1 AATAATTTACTATATCTTTGGTTGTCTTGA
* * *
8963590 AATAATTTACTATCTCTTTGTTTGTTTTGA
1 AATAATTTACTATATCTTTGGTTGTCTTGA
8963620 AATA
1 AATA
8963624 TTTTGAGGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.09, G:0.12, T:0.52
Consensus pattern (30 bp):
AATAATTTACTATATCTTTGGTTGTCTTGA
Found at i:8963608 original size:77 final size:77
Alignment explanation
Indices: 8963514--8963665 Score: 216
Period size: 77 Copynumber: 2.0 Consensus size: 77
8963504 TTTTTTTTTT
* *
8963514 ATAATTTACTATGTCTTTGTCTCTCTTAAAACATTTTGAGGTTTTTAATAATTTACTATATCTTT
1 ATAATTTACTATCTCTTTGTCTCTCTTAAAACATTTTGAGGTTTTAAATAATTTACTATATCTTT
8963579 GGT-TGTCTTGGA
66 -GTCTGTCTTGGA
* * * * * *
8963591 ATAATTTACTATCTCTTTGTTTGTTTTGAAATATTTTGAGGTTTTAAATAATTTGCTATATCTTT
1 ATAATTTACTATCTCTTTGTCTCTCTTAAAACATTTTGAGGTTTTAAATAATTTACTATATCTTT
8963656 GTCTGTCTTG
66 GTCTGTCTTG
8963666 AAACATTTTA
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
76 2 0.03
77 64 0.97
ACGTcount: A:0.24, C:0.11, G:0.13, T:0.53
Consensus pattern (77 bp):
ATAATTTACTATCTCTTTGTCTCTCTTAAAACATTTTGAGGTTTTAAATAATTTACTATATCTTT
GTCTGTCTTGGA
Found at i:8963667 original size:47 final size:47
Alignment explanation
Indices: 8963590--8963682 Score: 132
Period size: 47 Copynumber: 2.0 Consensus size: 47
8963580 GTTGTCTTGG
* * * * *
8963590 AATAATTTACTATCTCTTTGTTTGTTTTGAAATATTTTGAGGTTTTA
1 AATAATTTACTATATCTTTGTCTGTCTTGAAACATTTTAAGGTTTTA
*
8963637 AATAATTTGCTATATCTTTGTCTGTCTTGAAACATTTTAAGGTTTT
1 AATAATTTACTATATCTTTGTCTGTCTTGAAACATTTTAAGGTTTT
8963683 CTTGAAATAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.26, C:0.09, G:0.13, T:0.53
Consensus pattern (47 bp):
AATAATTTACTATATCTTTGTCTGTCTTGAAACATTTTAAGGTTTTA
Found at i:8963687 original size:21 final size:21
Alignment explanation
Indices: 8963661--8963703 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
8963651 TCTTTGTCTG
8963661 TCTTGAAACATTTTAAGGTTT
1 TCTTGAAACATTTTAAGGTTT
* *
8963682 TCTTGAAATATTTTGAGGTTT
1 TCTTGAAACATTTTAAGGTTT
8963703 T
1 T
8963704 AAATAATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.07, G:0.16, T:0.51
Consensus pattern (21 bp):
TCTTGAAACATTTTAAGGTTT
Found at i:8963700 original size:68 final size:68
Alignment explanation
Indices: 8963616--8963750 Score: 225
Period size: 68 Copynumber: 2.0 Consensus size: 68
8963606 TTTGTTTGTT
* *
8963616 TTGAAATATTTTGAGGTTTTAAATAATTTGCTATATCTTTGTCTGTCTTGAAACATTTTAAGGTT
1 TTGAAATATTTTGAGGTTTTAAATAATTTACTATATCTTTATCTGTCTTGAAACATTTTAAGGTT
8963681 TTC
66 TTC
* * *
8963684 TTGAAATATTTTGAGGTTTTAAATAATTTATTATCTCTTTATCTGTCTTGAAACATTTTGAGGTT
1 TTGAAATATTTTGAGGTTTTAAATAATTTACTATATCTTTATCTGTCTTGAAACATTTTAAGGTT
8963749 TT
66 TT
8963751 ATGGTCTTCG
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 62 1.00
ACGTcount: A:0.27, C:0.08, G:0.14, T:0.51
Consensus pattern (68 bp):
TTGAAATATTTTGAGGTTTTAAATAATTTACTATATCTTTATCTGTCTTGAAACATTTTAAGGTT
TTC
Found at i:8965031 original size:42 final size:43
Alignment explanation
Indices: 8964983--8965081 Score: 128
Period size: 43 Copynumber: 2.3 Consensus size: 43
8964973 CTGCTTAAGG
* *
8964983 TCATGTTCTTTAACGGCGTTTGT-GATAAAGCGCCGCTAAAGC
1 TCATGTTCTTTAACGGCATTTGTAGATAAAGCGCCACTAAAGC
* * * *
8965025 TTATGTTCTTTAGCGGCATTTGTAGGTAAAGCGCCACTAAAGG
1 TCATGTTCTTTAACGGCATTTGTAGATAAAGCGCCACTAAAGC
*
8965068 TCATGTTCTATAAC
1 TCATGTTCTTTAAC
8965082 AGTATTTTTT
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
42 20 0.43
43 27 0.57
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.33
Consensus pattern (43 bp):
TCATGTTCTTTAACGGCATTTGTAGATAAAGCGCCACTAAAGC
Found at i:8971353 original size:31 final size:32
Alignment explanation
Indices: 8971293--8971353 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 32
8971283 ACTATATATC
8971293 AATTTTGATTTGATGTGTAATTTCATAAATGA
1 AATTTTGATTTGATGTGTAATTTCATAAATGA
8971325 AATTTTGATTTGAT-T-TAATTCTCATAAAT
1 AATTTTGATTTGATGTGTAATT-TCATAAAT
8971354 TATTAATACG
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
30 5 0.18
31 9 0.32
32 14 0.50
ACGTcount: A:0.34, C:0.05, G:0.11, T:0.49
Consensus pattern (32 bp):
AATTTTGATTTGATGTGTAATTTCATAAATGA
Found at i:8971431 original size:19 final size:21
Alignment explanation
Indices: 8971393--8971431 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
8971383 TTTCAGTTTA
*
8971393 TATATTGCATACTCATATAAT
1 TATATTGCATACTAATATAAT
8971414 TATATTG-AT-CTAATATAA
1 TATATTGCATACTAATATAA
8971432 AAATAAATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 2 0.12
21 7 0.41
ACGTcount: A:0.41, C:0.10, G:0.05, T:0.44
Consensus pattern (21 bp):
TATATTGCATACTAATATAAT
Found at i:8973166 original size:14 final size:14
Alignment explanation
Indices: 8973142--8973187 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
8973132 GCTTTACTGT
8973142 TATAT-TGTATTTG
1 TATATATGTATTTG
8973155 TATATATGTATTTG
1 TATATATGTATTTG
* * *
8973169 TAAATATTTATTCG
1 TATATATGTATTTG
8973183 TATAT
1 TATAT
8973188 GTTGCAAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
13 5 0.18
14 23 0.82
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (14 bp):
TATATATGTATTTG
Found at i:8977172 original size:15 final size:17
Alignment explanation
Indices: 8977144--8977179 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
8977134 TTGAGTCATT
8977144 AAAAAATGATGAAA-TG
1 AAAAAATGATGAAAGTG
8977160 AAAAAATGA-GAAAGTG
1 AAAAAATGATGAAAGTG
8977176 AAAA
1 AAAA
8977180 GGAAAATGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.67, C:0.00, G:0.19, T:0.14
Consensus pattern (17 bp):
AAAAAATGATGAAAGTG
Found at i:8977187 original size:20 final size:19
Alignment explanation
Indices: 8977162--8977200 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
8977152 ATGAAATGAA
*
8977162 AAAATGAGAAAGTGAAAAGG
1 AAAATGAAAAAGT-AAAAGG
8977182 AAAATGAAAAAGTAAAAGG
1 AAAATGAAAAAGTAAAAGG
8977201 GAGAGGCTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.64, C:0.00, G:0.26, T:0.10
Consensus pattern (19 bp):
AAAATGAAAAAGTAAAAGG
Found at i:8980973 original size:132 final size:132
Alignment explanation
Indices: 8978472--8980967 Score: 3533
Period size: 132 Copynumber: 18.9 Consensus size: 132
8978462 TCCCTCGGTT
**
8978472 GCAGTGGAGCAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAT
1 GCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAT
**
8978537 -GACAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGG
66 GGTGA-ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGG
*
8978601 ACA
130 GCA
* * * * *
8978604 GCAGCGGAATAGATTGAAGATTTCAAATCTTTTCTCCCCAAGCAGTAGTGGAGTAGATCAAAGAT
1 GCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAT
*
8978669 GGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTAGG
66 GGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGG
8978734 CA
131 CA
* *
8978736 GCAGCGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAT
1 GCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAT
** *
8978801 GGTGAATTTTACCTCTTTGTGGTTACAGTGGAGTATATTGAAGCCAGTAATTCTA-TCTCCCTGG
66 GGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACT-TCCCTGG
8978865 GCA
130 GCA
*
8978868 GCAGTGGAATAGATTGAAGATTTCAGATATTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAT
1 GCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAT
** *
8978933 -GACAGATTTTACCTCCTTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGG
66 GGTGA-ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGG
*
8978997 ACA
130 GCA
* ** * *
8979000 ACAACGGAATAGATTGAAGATTTCAAATCTTGTCTCCCCAAGCAGTAGTGGAGCAGATCAAAGAT
1 GCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAT
* * * * * *
8979065 GG-CAGATTTTACCTCACTGAGGTTGCAGTGGAGTACATTGAAGCCAGTAATTCTA-TCTCTCTA
66 GGTGA-ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACT-TCCCTG
8979128 GGCA
129 GGCA
* * * *** * *
8979132 GTAGTAGAATAGATTGAGGAAAACAGATCTTGTCTCCCCAAGCAATAGTGGAGCAGATCAAAGAT
1 GCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAT
* * * *
8979197 GG-CAGATTTTACCTCCCTGAGGTTGCAGTGGAGTACATTGAAGCCAGTAATTCTACCTCCCTGG
66 GGTGA-ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGG
8979261 GCA
130 GCA
* *** * * *
8979264 GCAGTGGAATAGATTGAGGAAAACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGAT
1 GCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAT
* *
8979329 GGTGAATTTTACCTCACTGTGGTTACAGTGGAGTACATTGAAGCCAGAAATTCTACTTCCCTGGG
66 GGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGG
8979394 CA
131 CA
* * ** * * * *
8979396 GCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCTTCATAAGTGGCGGAGTAGATTAAAGAT
1 GCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAT
* ** *
8979461 GGTGAATTTTACCTTCCTGTGGTTACAACGGAGTACATTGAAGCTAGTAATTCTACTTCCCTGGG
66 GGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGG
8979526 CA
131 CA
*
8979528 GCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAACAGTAGTGGAGCAGATCAAAGAT
1 GCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAT
* *
8979593 GGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTAGA
66 GGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGG
8979658 CA
131 CA
** * * * *
8979660 GCAGCAGAATAGATTGAAGATTTCAAATCTTTTCTCCCCAAGCAGTAGTGGAGTAGATCAAAGAT
1 GCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAT
*
8979725 GGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTAGG
66 GGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGG
8979790 CA
131 CA
* *
8979792 GCAGCGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAT
1 GCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAT
** * *
8979857 GGTGAATTTTACCTCTTTGTGGTTACAGTGGAGTATATTGAAGCCAGTAATTCTA-TCTCCCTAG
66 GGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACT-TCCCTGG
8979921 GCA
130 GCA
8979924 GCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAT
1 GCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAT
** *
8979989 -GACAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCGGTAATTCTACTTCCCTGG
66 GGTGA-ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGG
*
8980053 ACA
130 GCA
* * * *
8980056 ACAGCGGAATAGATTGAAGATTTCAAATCTTGTCTCCCCAAGCAGTAGTGGAGCAGATCAAAGAT
1 GCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAT
* * * * *
8980121 GG-CAGATTTTACCTCACTGAGGTTGCAGTGGAGTACATTGAAGCCAGTAATTCTA-TCTCCCTA
66 GGTGA-ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACT-TCCCTG
8980184 GGCA
129 GGCA
* * *** *
8980188 GTAGTGGAATAGATTGAGGAAAACAGATCTTGTCTCCCCAAGCAGTAGTGGAGCAGATCAAAGAT
1 GCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAT
* * * *
8980253 GG-CAGATTTTACCTCCCTGAGGTTGCAGTGGAGTACATTGAAGCCAGTAATTCTACCTCCCTGG
66 GGTGA-ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGG
8980317 GCA
130 GCA
* *** * * * * *
8980320 GCAGTGGAATAGATTGAGGAAAACAAATCTTATCCCCCTAAACAGTAGTGGAGCAGATTAAAGAT
1 GCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAT
* * *
8980385 GGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGAAATTCTACTTCCTTAGG
66 GGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGG
8980450 CA
131 CA
* * * * * *
8980452 GCAGTGGAATAGATTGAAGATTTCAGATTTTGTCTCCTTCA-CAAGTGGCGGAGTAGATCAAAGA
1 GCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGC-AGTAGTGGAGCAGATCAAAGA
** *
8980516 TGGTGAATTTTACCTCCCTGTGGTTACAACGGAGTACATTGAAGCTAGTAATTCTACTTCCCTGG
65 TGGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGG
*
8980581 ACA
130 GCA
*
8980584 GCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAACAGTAGTGGAGCAGATCAAAGAT
1 GCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAT
* *
8980649 GGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTGATTCTACTTCCCTAGG
66 GGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGG
8980714 CA
131 CA
*
8980716 GCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTTCCTAAGCAGTAGTGGAGCAGATCAAAGAT
1 GCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAT
* *
8980781 GGTGAATTTTACCTCCTTGTGGTTACAGTGGAGTATATTGAAGCCAGTAATTCTA-TCTCCCTGG
66 GGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACT-TCCCTGG
8980845 GCA
130 GCA
* * * * *
8980848 GTAGTGGAATAGATTGAAGATTTCAGATCTTATCTCTCTAAGTAGTAGTGGAGTAGATCAAAGAT
1 GCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAT
* *
8980913 AGTGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA
66 GGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTA
8980968 TCTCCCCGGT
Statistics
Matches: 2133, Mismatches: 213, Indels: 36
0.90 0.09 0.02
Matches are distributed among these distances:
131 10 0.00
132 2114 0.99
133 9 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (132 bp):
GCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAT
GGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTGGG
CA
Found at i:8983215 original size:14 final size:14
Alignment explanation
Indices: 8983191--8983236 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
8983181 ACTTTACTGT
8983191 TATAT-TGTATTTG
1 TATATATGTATTTG
8983204 TATATATGTATTTG
1 TATATATGTATTTG
* * *
8983218 TAAATATTTATTCG
1 TATATATGTATTTG
8983232 TATAT
1 TATAT
8983237 GTTGCAAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
13 5 0.18
14 23 0.82
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (14 bp):
TATATATGTATTTG
Found at i:8986643 original size:14 final size:14
Alignment explanation
Indices: 8986626--8986655 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8986616 AAAAATATTA
*
8986626 ATCATTATATATGT
1 ATCAATATATATGT
8986640 ATCAATATATATGT
1 ATCAATATATATGT
8986654 AT
1 AT
8986656 AGAATTAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.47
Consensus pattern (14 bp):
ATCAATATATATGT
Found at i:8987706 original size:13 final size:14
Alignment explanation
Indices: 8987689--8987748 Score: 54
Period size: 13 Copynumber: 4.4 Consensus size: 14
8987679 TTGGGTTTGG
8987689 GGTTTGAGGTTCAA
1 GGTTTGAGGTTCAA
8987703 -GTTT-ATGGTTCAA
1 GGTTTGA-GGTTCAA
* *
8987716 GGATTTGAGGTTTAT
1 GG-TTTGAGGTTCAA
*
8987731 GGGTTGA-GTTCAA
1 GGTTTGAGGTTCAA
8987744 GGTTT
1 GGTTT
8987749 AAGGGTTTCG
Statistics
Matches: 36, Mismatches: 6, Indels: 9
0.71 0.12 0.18
Matches are distributed among these distances:
12 1 0.03
13 19 0.53
14 5 0.14
15 10 0.28
16 1 0.03
ACGTcount: A:0.20, C:0.05, G:0.33, T:0.42
Consensus pattern (14 bp):
GGTTTGAGGTTCAA
Found at i:8988699 original size:95 final size:92
Alignment explanation
Indices: 8988557--8988765 Score: 228
Period size: 95 Copynumber: 2.3 Consensus size: 92
8988547 CTCAGTCGAG
* * * * * *
8988557 CAATTATCAAAAACC-TTTATTTT-ATCTATACTATGA-TTATGGGGTTTATTGAATTGATGTCG
1 CAATTATCGAAAACCATTCATTTTCATGTGTACTAT-ATTTAAGGGGTTTATTGAATTGATGTCA
* * *
8988619 TCCTTCAATTGGGTCTCAATTCTGAATTGAA
65 CCCTTCAACTGGATC-CAATTC--AATTGAA
* * *
8988650 CAATTA-CTGAAAACCATTCCTTTTCATGTGTACTATATTTAAGGGGTTTATTGAGTTGGTGTCA
1 CAATTATC-GAAAACCATTCATTTTCATGTGTACTATATTTAAGGGGTTTATTGAATTGATGTCA
*
8988714 CCCTTTAACTGGATCCAATTCAATTGAA
65 CCCTTCAACTGGATCCAATTCAATTGAA
8988742 CAATTATCGAAAACCATTCATTTT
1 CAATTATCGAAAACCATTCATTTT
8988766 ATAAAATAAT
Statistics
Matches: 97, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
92 29 0.30
93 13 0.13
94 13 0.13
95 42 0.43
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (92 bp):
CAATTATCGAAAACCATTCATTTTCATGTGTACTATATTTAAGGGGTTTATTGAATTGATGTCAC
CCTTCAACTGGATCCAATTCAATTGAA
Found at i:8989704 original size:18 final size:20
Alignment explanation
Indices: 8989681--8989726 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
8989671 TTAAAAATTA
*
8989681 AATTTTTT-ATAAT-TTTAT
1 AATTTTTTAATAATGTTAAT
8989699 AATTTTTTAAATAATGTTAAT
1 AATTTTTT-AATAATGTTAAT
8989720 AATTTTT
1 AATTTTT
8989727 ATATTTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 8 0.33
20 5 0.21
21 11 0.46
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (20 bp):
AATTTTTTAATAATGTTAAT
Found at i:8994688 original size:15 final size:16
Alignment explanation
Indices: 8994651--8994693 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
8994641 TATATACATT
*
8994651 AAAAATAATTACATATG
1 AAAAATAA-TAAATATG
*
8994668 AAAAATTATAAATAT-
1 AAAAATAATAAATATG
8994683 AAAAATAATAA
1 AAAAATAATAA
8994694 TTACATTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 10 0.43
16 6 0.26
17 7 0.30
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (16 bp):
AAAAATAATAAATATG
Found at i:8996439 original size:22 final size:22
Alignment explanation
Indices: 8996407--8996457 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
8996397 TAGAAAAATC
* * *
8996407 TTTTGTTAT-TTTTGTTGTTGT
1 TTTTGCTATATTTTATTGTTAT
8996428 TTTT-CTATATTTTATTGTTAT
1 TTTTGCTATATTTTATTGTTAT
8996449 TTTTGCTAT
1 TTTTGCTAT
8996458 CCTTTAGTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 3 0.12
21 18 0.72
22 4 0.16
ACGTcount: A:0.12, C:0.04, G:0.12, T:0.73
Consensus pattern (22 bp):
TTTTGCTATATTTTATTGTTAT
Found at i:8996463 original size:22 final size:21
Alignment explanation
Indices: 8996421--8996463 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
8996411 GTTATTTTTG
* *
8996421 TTGTTGTTTTTCTATATTTTA
1 TTGTTATTTTTCTATACTTTA
*
8996442 TTGTTATTTTTGCTATCCTTTA
1 TTGTTATTTTT-CTATACTTTA
8996464 GTATTATGTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.14, C:0.09, G:0.09, T:0.67
Consensus pattern (21 bp):
TTGTTATTTTTCTATACTTTA
Found at i:9001991 original size:30 final size:30
Alignment explanation
Indices: 9001957--9002013 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
9001947 TTAGGCACTT
9001957 AGATATTTTTCTGT-AGACTTGTCAAATACG
1 AGATATTTTTCTGTGA-ACTTGTCAAATACG
9001987 AGATATTTTTCTGTGAACTTGTCAAAT
1 AGATATTTTTCTGTGAACTTGTCAAAT
9002014 TCTAAACAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.30, C:0.12, G:0.16, T:0.42
Consensus pattern (30 bp):
AGATATTTTTCTGTGAACTTGTCAAATACG
Found at i:9009710 original size:44 final size:44
Alignment explanation
Indices: 9009662--9009892 Score: 322
Period size: 44 Copynumber: 5.2 Consensus size: 44
9009652 ACTACTACTT
* **
9009662 AGGGAGATAGGA-TCCACAATCTTCAACCTATTCCACTGCTATTC
1 AGGGAGATAGGACT-TACAATCTTCAACCTATTCCACTGCTGGTC
*
9009706 AGGGAGATAGGA-TATACAATCTTCCACCTATTCCACTGCTGGTC
1 AGGGAGATAGGACT-TACAATCTTCAACCTATTCCACTGCTGGTC
* * *
9009750 AAGGAGTTAGGACTTGCAATCTTCAACCTATTCCACTGCTGGTC
1 AGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGGTC
* * * *
9009794 AGGGAGTTAGGACTGACAATCTTCTACCTATTCCTCTGCTGGTC
1 AGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGGTC
9009838 AGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGGTC
1 AGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGGTC
*
9009882 AGGGAGCTAGG
1 AGGGAGATAGG
9009893 TTTTGTGATT
Statistics
Matches: 167, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
44 166 0.99
45 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.28
Consensus pattern (44 bp):
AGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGGTC
Found at i:9020412 original size:17 final size:17
Alignment explanation
Indices: 9020392--9020424 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
9020382 TTAATTTGGT
*
9020392 TTTATTTTATTTATTTG
1 TTTATTTGATTTATTTG
9020409 TTTATTTGATTTATTT
1 TTTATTTGATTTATTT
9020425 CACTAACGGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.00, G:0.06, T:0.76
Consensus pattern (17 bp):
TTTATTTGATTTATTTG
Found at i:9020414 original size:8 final size:9
Alignment explanation
Indices: 9020392--9020424 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
9020382 TTAATTTGGT
*
9020392 TTTATTTTA
1 TTTATTTGA
9020401 TTTATTTG-
1 TTTATTTGA
9020409 TTTATTTGA
1 TTTATTTGA
9020418 TTTATTT
1 TTTATTT
9020425 CACTAACGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.18, C:0.00, G:0.06, T:0.76
Consensus pattern (9 bp):
TTTATTTGA
Found at i:9020529 original size:5 final size:6
Alignment explanation
Indices: 9020502--9020540 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
9020492 GAATGATGCC
* *
9020502 AAAAGA AAGAAGC AAAAGA AAAAGA AAAATA AAAAGA AA
1 AAAAGA AA-AAGA AAAAGA AAAAGA AAAAGA AAAAGA AA
9020541 CGGTGAGGGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
6 23 0.82
7 5 0.18
ACGTcount: A:0.79, C:0.03, G:0.15, T:0.03
Consensus pattern (6 bp):
AAAAGA
Found at i:9024420 original size:24 final size:24
Alignment explanation
Indices: 9024393--9024439 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
9024383 GAACTTCCAG
9024393 GATTTATGGCTATCCGGAGCTTCT
1 GATTTATGGCTATCCGGAGCTTCT
* *
9024417 GATTTATGGCTCTTCGGAGCTTC
1 GATTTATGGCTATCCGGAGCTTC
9024440 CCGTTAAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.15, C:0.21, G:0.26, T:0.38
Consensus pattern (24 bp):
GATTTATGGCTATCCGGAGCTTCT
Found at i:9027045 original size:20 final size:20
Alignment explanation
Indices: 9027016--9027053 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
9027006 ATAATTATAT
* *
9027016 TAATTGTATATGTTAAATAA
1 TAATTATATATATTAAATAA
9027036 TAATTATATATATTAAAT
1 TAATTATATATATTAAAT
9027054 CATCAACCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (20 bp):
TAATTATATATATTAAATAA
Found at i:9033192 original size:30 final size:31
Alignment explanation
Indices: 9033151--9033209 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
9033141 TTCCACATCC
*
9033151 TTTATGTATAT-ATTTATTAGAATCTTTAGCT
1 TTTATGTATATAATTTATTAAAAT-TTTAGCT
9033182 TTTA-GTATATAATTTATTAAAATTTTAG
1 TTTATGTATATAATTTATTAAAATTTTAG
9033210 AATTTATAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 11 0.42
31 15 0.58
ACGTcount: A:0.34, C:0.03, G:0.08, T:0.54
Consensus pattern (31 bp):
TTTATGTATATAATTTATTAAAATTTTAGCT
Found at i:9037204 original size:16 final size:16
Alignment explanation
Indices: 9037183--9037213 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9037173 TTCACTATTA
*
9037183 TATCTTTTGTATTTTC
1 TATCTTTTATATTTTC
9037199 TATCTTTTATATTTT
1 TATCTTTTATATTTT
9037214 GCATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.10, G:0.03, T:0.71
Consensus pattern (16 bp):
TATCTTTTATATTTTC
Found at i:9038888 original size:20 final size:19
Alignment explanation
Indices: 9038863--9038915 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
9038853 AAATAGTATT
9038863 TTATTAATTTAATTTTAAA
1 TTATTAATTTAATTTTAAA
*
9038882 GTTATT-ATCTTAATATTAAA
1 -TTATTAAT-TTAATTTTAAA
9038902 -T-TTAATTTAATTTT
1 TTATTAATTTAATTTT
9038916 TATCTTGTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
17 9 0.31
18 3 0.10
19 2 0.07
20 15 0.52
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (19 bp):
TTATTAATTTAATTTTAAA
Found at i:9038961 original size:62 final size:59
Alignment explanation
Indices: 9038891--9039007 Score: 153
Period size: 62 Copynumber: 1.9 Consensus size: 59
9038881 AGTTATTATC
** * * *
9038891 TTAATATTAAATTTAATTTAATTTTTATCTTGTAGATAAACATTTTATTATTTTAATAAGAT
1 TTAATATTAAATTTAATCCAATATTTATC-T-TA-ATAAACATTATATTAATTTAATAAGAT
*
9038953 TTAATATTAAATTTAATCCAATATTTATCTTAATAAATATTATATTAATTTAATA
1 TTAATATTAAATTTAATCCAATATTTATCTTAATAAACATTATATTAATTTAATA
9039008 TTAAAGTGAT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
59 20 0.41
60 2 0.04
61 1 0.02
62 26 0.53
ACGTcount: A:0.42, C:0.04, G:0.03, T:0.51
Consensus pattern (59 bp):
TTAATATTAAATTTAATCCAATATTTATCTTAATAAACATTATATTAATTTAATAAGAT
Found at i:9040894 original size:42 final size:41
Alignment explanation
Indices: 9040828--9040940 Score: 118
Period size: 42 Copynumber: 2.7 Consensus size: 41
9040818 GCTAAACAGG
* *** * *
9040828 AACCCGTAAGGGTTAAACGAAAGCTCATACCGGTTGAATGGA
1 AACCCATAAGGGTTAAACG-AAGCTCATAAAAGTTGAACGAA
* *
9040870 AACCTATAAGGGTTAAACTGAAGCTCAAAAAAGTTGAACGAA
1 AACCCATAAGGGTTAAAC-GAAGCTCATAAAAGTTGAACGAA
*
9040912 AACCCATAAGGGTTAAACAGAAACTCATA
1 AACCCATAAGGGTTAAAC-GAAGCTCATA
9040941 TGAGTTAACA
Statistics
Matches: 58, Mismatches: 12, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
42 57 0.98
43 1 0.02
ACGTcount: A:0.43, C:0.18, G:0.20, T:0.19
Consensus pattern (41 bp):
AACCCATAAGGGTTAAACGAAGCTCATAAAAGTTGAACGAA
Found at i:9040940 original size:21 final size:21
Alignment explanation
Indices: 9040820--9040953 Score: 60
Period size: 21 Copynumber: 6.4 Consensus size: 21
9040810 ATATAAGTGC
* * *
9040820 TAAACAGGAACCCGTAAGGGT
1 TAAACAGAAACTCATAAGGGT
**
9040841 TAAAC-GAAAGCTCATACCGGT
1 TAAACAGAAA-CTCATAAGGGT
* **
9040862 TGAATGGAAAC-CTATAAGGGT
1 TAAACAGAAACTC-ATAAGGGT
* * * **
9040883 TAAACTGAAGCTCAAAAAAGT
1 TAAACAGAAACTCATAAGGGT
* *
9040904 TGAAC-GAAAACCCATAAGGGT
1 TAAACAG-AAACTCATAAGGGT
* *
9040925 TAAACAGAAACTCATATGAGT
1 TAAACAGAAACTCATAAGGGT
9040946 T-AACAGAA
1 TAAACAGAA
9040954 GCTCGTGCGA
Statistics
Matches: 81, Mismatches: 26, Indels: 13
0.68 0.22 0.11
Matches are distributed among these distances:
20 12 0.15
21 63 0.78
22 6 0.07
ACGTcount: A:0.44, C:0.16, G:0.21, T:0.19
Consensus pattern (21 bp):
TAAACAGAAACTCATAAGGGT
Found at i:9041057 original size:24 final size:24
Alignment explanation
Indices: 9041025--9041072 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
9041015 TACTTAGGTA
*
9041025 ATTTGCCATCAATTCATCATTTGC
1 ATTTACCATCAATTCATCATTTGC
9041049 ATTTACCATCAATTCATCATTTGC
1 ATTTACCATCAATTCATCATTTGC
9041073 CACAGAACGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.06, T:0.42
Consensus pattern (24 bp):
ATTTACCATCAATTCATCATTTGC
Found at i:9048035 original size:21 final size:21
Alignment explanation
Indices: 9047968--9048053 Score: 66
Period size: 21 Copynumber: 4.1 Consensus size: 21
9047958 CAACTGAATG
* *
9047968 GAAACCTATAAGGGTTAAACT
1 GAAACCCATAAGGGTTAAACA
* * * * *
9047989 GAAGCTCAAAAGAGTTGAACA
1 GAAACCCATAAGGGTTAAACA
*
9048010 GAAACCCATAAGGGTTAAAAA
1 GAAACCCATAAGGGTTAAACA
* * *
9048031 GAAACTCATATGAGTT-AACA
1 GAAACCCATAAGGGTTAAACA
9048051 GAA
1 GAA
9048054 GCTCATGCGA
Statistics
Matches: 48, Mismatches: 17, Indels: 1
0.73 0.26 0.02
Matches are distributed among these distances:
20 6 0.12
21 42 0.88
ACGTcount: A:0.48, C:0.14, G:0.20, T:0.19
Consensus pattern (21 bp):
GAAACCCATAAGGGTTAAACA
Found at i:9048046 original size:42 final size:41
Alignment explanation
Indices: 9047922--9048053 Score: 131
Period size: 42 Copynumber: 3.2 Consensus size: 41
9047912 ATAAGTGCTA
* * **
9047922 AACAGAAACCCGTAAGGGTTAAACGGAAGCTCATAGCAACTG
1 AACAGAAACCCATAAGGGTTAAACAGAAGCTCATAG-AGTTG
** * * *
9047964 AATGGAAACCTATAAGGGTTAAACTGAAGCTCAAAAGAGTTG
1 AACAGAAACCCATAAGGGTTAAACAGAAGCTC-ATAGAGTTG
* *
9048006 AACAGAAACCCATAAGGGTTAAAAAGAAACTCATATGAGTT-
1 AACAGAAACCCATAAGGGTTAAACAGAAGCTCATA-GAGTTG
9048047 AACAGAA
1 AACAGAA
9048054 GCTCATGCGA
Statistics
Matches: 73, Mismatches: 15, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
41 9 0.12
42 61 0.84
43 3 0.04
ACGTcount: A:0.45, C:0.16, G:0.21, T:0.17
Consensus pattern (41 bp):
AACAGAAACCCATAAGGGTTAAACAGAAGCTCATAGAGTTG
Found at i:9048157 original size:24 final size:24
Alignment explanation
Indices: 9048125--9048172 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
9048115 TACTTAGGTA
*
9048125 ATTTTCCATCAATTCATCATTTGC
1 ATTTACCATCAATTCATCATTTGC
*
9048149 ATTTACCATCAATTCATCCTTTGC
1 ATTTACCATCAATTCATCATTTGC
9048173 CACAGAACGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.25, C:0.27, G:0.04, T:0.44
Consensus pattern (24 bp):
ATTTACCATCAATTCATCATTTGC
Found at i:9049703 original size:16 final size:16
Alignment explanation
Indices: 9049682--9049719 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
9049672 AGCCGATGCT
9049682 AGTGTGGCCGAGGACA
1 AGTGTGGCCGAGGACA
9049698 AGTGTGGCCGAGGACA
1 AGTGTGGCCGAGGACA
9049714 AGTGTG
1 AGTGTG
9049720 ATGAATGGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.24, C:0.16, G:0.45, T:0.16
Consensus pattern (16 bp):
AGTGTGGCCGAGGACA
Found at i:9052609 original size:26 final size:26
Alignment explanation
Indices: 9052571--9052639 Score: 120
Period size: 26 Copynumber: 2.7 Consensus size: 26
9052561 CATCTTGACC
9052571 CATAGCTCGTGTGAGCAGGCCCATTT
1 CATAGCTCGTGTGAGCAGGCCCATTT
*
9052597 CATAGCTCATGTGAGCAGGCCCATTT
1 CATAGCTCGTGTGAGCAGGCCCATTT
*
9052623 CATAGCTTGTGTGAGCA
1 CATAGCTCGTGTGAGCA
9052640 TTTACAGTTA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.22, C:0.25, G:0.26, T:0.28
Consensus pattern (26 bp):
CATAGCTCGTGTGAGCAGGCCCATTT
Found at i:9052663 original size:25 final size:25
Alignment explanation
Indices: 9052631--9052692 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
9052621 TTCATAGCTT
9052631 GTGTGAGCATTTA-CAGTTACAACTC
1 GTGTGAGCATTTATC-GTTACAACTC
* * *
9052656 GTGTGAGCAATTATCGTTATAGCTC
1 GTGTGAGCATTTATCGTTACAACTC
9052681 GTGTGAGCATTT
1 GTGTGAGCATTT
9052693 TCCCTCGTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 31 0.97
26 1 0.03
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.35
Consensus pattern (25 bp):
GTGTGAGCATTTATCGTTACAACTC
Found at i:9059234 original size:28 final size:29
Alignment explanation
Indices: 9059202--9059262 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 29
9059192 AAAGGAATGT
* * *
9059202 CTTTGTGGCAATTTCTG-TAAATGGACGC
1 CTTTGTGGCAATCTCTGTTAAAAGGACAC
*
9059230 CTTTGTGGCTATCTCTGTTAAAAGGACAC
1 CTTTGTGGCAATCTCTGTTAAAAGGACAC
9059259 CTTT
1 CTTT
9059263 ATGACTATCT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 15 0.54
29 13 0.46
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.38
Consensus pattern (29 bp):
CTTTGTGGCAATCTCTGTTAAAAGGACAC
Found at i:9059261 original size:29 final size:29
Alignment explanation
Indices: 9059202--9059280 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 29
9059192 AAAGGAATGT
* * * *
9059202 CTTTGTGGCAATTTCTG-TAAATGGACGC
1 CTTTGTGGCTATCTCTGTTAAAAGGACAC
9059230 CTTTGTGGCTATCTCTGTTAAAAGGACAC
1 CTTTGTGGCTATCTCTGTTAAAAGGACAC
* *
9059259 CTTTATGACTATCT-TAGTTAAA
1 CTTTGTGGCTATCTCT-GTTAAA
9059281 GAAATACTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
28 16 0.37
29 27 0.63
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.38
Consensus pattern (29 bp):
CTTTGTGGCTATCTCTGTTAAAAGGACAC
Found at i:9072127 original size:22 final size:21
Alignment explanation
Indices: 9072089--9072131 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
9072079 CGTGAATCAA
*
9072089 TTTTTTATATTAAAAAATATT
1 TTTTTTATATAAAAAAATATT
*
9072110 TTTTTTATGTAAATAAAATATT
1 TTTTTTATATAAA-AAAATATT
9072132 AATTTTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (21 bp):
TTTTTTATATAAAAAAATATT
Found at i:9072778 original size:60 final size:60
Alignment explanation
Indices: 9072709--9072827 Score: 202
Period size: 60 Copynumber: 2.0 Consensus size: 60
9072699 TTGTTTTTTA
* * * *
9072709 TAATTATTTTAAAATTAATTTGTTAGTAATTTAGGGTTATGTTATAAATTTTTGTGTTTG
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTTGTGTTTG
9072769 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTTGTGTTT
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTTGTGTTT
9072828 AGTTTAGTAT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.54
Consensus pattern (60 bp):
TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTTGTGTTTG
Found at i:9075246 original size:33 final size:33
Alignment explanation
Indices: 9075184--9075303 Score: 98
Period size: 33 Copynumber: 3.6 Consensus size: 33
9075174 TAGTCCACTA
* * * * *
9075184 CCACCTCAGTACTCCAGTCATCCTAGCTCGTAT
1 CCACCTCAATACTCCACTCCTTCTGGCTCGTAT
* * **
9075217 CCACTTCAGTACTCTGCTCCTTCTGGCTCGTAT
1 CCACCTCAATACTCCACTCCTTCTGGCTCGTAT
* *
9075250 CTACCTCAATACTCCACTCCTTTTGGC-CTGTAT
1 CCACCTCAATACTCCACTCCTTCTGGCTC-GTAT
* **
9075283 CCACCGCCGTACTCCACTCCT
1 CCACCTCAATACTCCACTCCT
9075304 CCCGGCTCAA
Statistics
Matches: 69, Mismatches: 17, Indels: 2
0.78 0.19 0.02
Matches are distributed among these distances:
32 1 0.01
33 68 0.99
ACGTcount: A:0.17, C:0.41, G:0.12, T:0.31
Consensus pattern (33 bp):
CCACCTCAATACTCCACTCCTTCTGGCTCGTAT
Found at i:9079223 original size:192 final size:196
Alignment explanation
Indices: 9078857--9079246 Score: 603
Period size: 192 Copynumber: 2.0 Consensus size: 196
9078847 TCGTATCTAT
9078857 ACCTGGGTTATATACTGATCCGGGAAAAAAATTAATAATATTTTATTAAACGAGAAAAAAATAAA
1 ACCTGGGTTATATACTGATCCGGGAAAAAAATTAATAATATTTTATTAAAC-AGAAAAAAATAAA
* * * *
9078922 ATATTTTAATATAAAAATTTGATTCGCGCCTGTCAGATAGGCGCAATTAAAGAAACGTACCATTT
65 ATATTTTAATATAAAAAATTGATTCGCGCCTATCAGATAGGCACAATTAAAGAAACATACCATTT
* *
9078987 CGGTAATTAATTTAGCTGACAACCTATTTAGGTATTTAAAATTTTTTTTAATATATTTGGGTAAA
130 CGATAATTAATCTAGCTGACAACCTATTTAGGTATTTAAAATTTTTTTTAATATATTTGGGTAAA
9079052 AA
195 AA
* * * *
9079054 ACCT-GGTTATATATTGATCCGGG-GAAAAATTAATAATATTTTTATTAAA-A-CAAGAAA-AAA
1 ACCTGGGTTATATACTGATCCGGGAAAAAAATTAATAATA-TTTTATTAAACAGAAAAAAATAAA
* *
9079114 ATATTTTAATATAAAAAATTGATTCGCGCCTATCAGATAGGTACGATTAAAGAAAACATACCATT
65 ATATTTTAATATAAAAAATTGATTCGCGCCTATCAGATAGGCACAATTAAAG-AAACATACCATT
9079179 TCGATAATTAATCTAGCTGACAACCTATTTAGGTATTT-AAATTTTTTTTAATATATTTGGGTAA
129 TCGATAATTAATCTAGCTGACAACCTATTTAGGTATTTAAAATTTTTTTTAATATATTTGGGTAA
9079243 AAA
194 AAA
9079246 A
1 A
9079247 ACCCTCAAAT
Statistics
Matches: 179, Mismatches: 12, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
192 80 0.45
193 52 0.29
194 1 0.01
195 14 0.08
196 28 0.16
197 4 0.02
ACGTcount: A:0.41, C:0.11, G:0.13, T:0.35
Consensus pattern (196 bp):
ACCTGGGTTATATACTGATCCGGGAAAAAAATTAATAATATTTTATTAAACAGAAAAAAATAAAA
TATTTTAATATAAAAAATTGATTCGCGCCTATCAGATAGGCACAATTAAAGAAACATACCATTTC
GATAATTAATCTAGCTGACAACCTATTTAGGTATTTAAAATTTTTTTTAATATATTTGGGTAAAA
A
Found at i:9084311 original size:7 final size:7
Alignment explanation
Indices: 9084300--9084353 Score: 72
Period size: 7 Copynumber: 7.7 Consensus size: 7
9084290 TCCTCAATCC
9084300 TCAATTT
1 TCAATTT
*
9084307 CCAATTT
1 TCAATTT
*
9084314 TCTATTT
1 TCAATTT
9084321 TCAATTT
1 TCAATTT
*
9084328 TTAATTT
1 TCAATTT
*
9084335 TTAATTT
1 TCAATTT
9084342 TCAATTT
1 TCAATTT
9084349 TCAAT
1 TCAAT
9084354 CCTCAATAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 41 1.00
ACGTcount: A:0.28, C:0.13, G:0.00, T:0.59
Consensus pattern (7 bp):
TCAATTT
Found at i:9084403 original size:15 final size:16
Alignment explanation
Indices: 9084378--9084407 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
9084368 TAAATTCTTT
9084378 TTTGAATTTTATTCTC
1 TTTGAATTTTATTCTC
9084394 TTTG-ATTTTATTCT
1 TTTGAATTTTATTCT
9084408 TTTCGTTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.17, C:0.10, G:0.07, T:0.67
Consensus pattern (16 bp):
TTTGAATTTTATTCTC
Found at i:9086140 original size:54 final size:54
Alignment explanation
Indices: 9086082--9086297 Score: 198
Period size: 54 Copynumber: 3.8 Consensus size: 54
9086072 ACACGCACAC
* * * *
9086082 TCATTCCCCACATCATCACCTTCAGCTTCGGTTTATTTTATACAACATGCGCAA
1 TCATTCCCTACATCAACACATTCAGCTTCAGTTTATTTTATACAACATGCGCAA
* * ** * *
9086136 TCATTCCCTGCATGAACACATTCAGCACCAATTTATTTTACACAAACATCATGACACGCACA
1 TCATTCCCTACATCAACACATTCAGCTTCAGTTTATTTTATAC--A-A-CATG---CGCA-A
* *
9086198 CTCATTCCCTACATCATCACCTTCAGCTTCAGTTTATTTTATACAACATGCGCAA
1 -TCATTCCCTACATCAACACATTCAGCTTCAGTTTATTTTATACAACATGCGCAA
* ** * *
9086253 TCATTCCCTGCATCAACACATTCAGCACCAATTTATTTTACACAA
1 TCATTCCCTACATCAACACATTCAGCTTCAGTTTATTTTATACAA
9086298 GCATCACGAC
Statistics
Matches: 128, Mismatches: 25, Indels: 18
0.75 0.15 0.11
Matches are distributed among these distances:
54 71 0.55
55 1 0.01
56 5 0.04
57 1 0.01
58 4 0.03
59 4 0.03
60 1 0.01
61 5 0.04
62 1 0.01
63 35 0.27
ACGTcount: A:0.31, C:0.31, G:0.07, T:0.31
Consensus pattern (54 bp):
TCATTCCCTACATCAACACATTCAGCTTCAGTTTATTTTATACAACATGCGCAA
Found at i:9086217 original size:117 final size:117
Alignment explanation
Indices: 9086060--9086324 Score: 458
Period size: 117 Copynumber: 2.3 Consensus size: 117
9086050 AATTTTTTTT
* * * *
9086060 ACAAGCATCACAACACGCACACTCATTCCCCACATCATCACCTTCAGCTTCGGTTTATTTTATAC
1 ACAAACATCACGACACGCACACTCATTCCCTACATCATCACCTTCAGCTTCAGTTTATTTTATAC
*
9086125 AACATGCGCAATCATTCCCTGCATGAACACATTCAGCACCAATTTATTTTAC
66 AACATGCGCAATCATTCCCTGCATCAACACATTCAGCACCAATTTATTTTAC
*
9086177 ACAAACATCATGACACGCACACTCATTCCCTACATCATCACCTTCAGCTTCAGTTTATTTTATAC
1 ACAAACATCACGACACGCACACTCATTCCCTACATCATCACCTTCAGCTTCAGTTTATTTTATAC
9086242 AACATGCGCAATCATTCCCTGCATCAACACATTCAGCACCAATTTATTTTAC
66 AACATGCGCAATCATTCCCTGCATCAACACATTCAGCACCAATTTATTTTAC
* *
9086294 ACAAGCATCACGACACGCACAATCATTCCCT
1 ACAAACATCACGACACGCACACTCATTCCCT
9086325 GTATCAACAC
Statistics
Matches: 139, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
117 139 1.00
ACGTcount: A:0.32, C:0.33, G:0.08, T:0.28
Consensus pattern (117 bp):
ACAAACATCACGACACGCACACTCATTCCCTACATCATCACCTTCAGCTTCAGTTTATTTTATAC
AACATGCGCAATCATTCCCTGCATCAACACATTCAGCACCAATTTATTTTAC
Found at i:9086235 original size:63 final size:62
Alignment explanation
Indices: 9086131--9086334 Score: 210
Period size: 63 Copynumber: 3.4 Consensus size: 62
9086121 ATACAACATG
* *
9086131 CGCA-ATCATTCCCTGCATGAACACATTCAGCACCAATTTATTTTACACAAACATCATGACA
1 CGCACATCATTCCCTACATCAACACATTCAGCACCAATTTATTTTACACAAACATCATGACA
* * ** * *
9086192 CGCACACTCATTCCCTACATCATCACCTTCAGCTTCAGTTTATTTTATAC--A-A-CATG---
1 CGCACA-TCATTCCCTACATCAACACATTCAGCACCAATTTATTTTACACAAACATCATGACA
* * *
9086248 CGCA-ATCATTCCCTGCATCAACACATTCAGCACCAATTTATTTTACACAAGCATCACGACA
1 CGCACATCATTCCCTACATCAACACATTCAGCACCAATTTATTTTACACAAACATCATGACA
**
9086309 CGCACAATCATTCCCTGTATCAACAC
1 CGCAC-ATCATTCCCTACATCAACAC
9086335 TTTCTCCAGG
Statistics
Matches: 114, Mismatches: 18, Indels: 20
0.75 0.12 0.13
Matches are distributed among these distances:
54 36 0.32
55 1 0.01
56 4 0.04
57 1 0.01
58 3 0.03
59 4 0.04
60 1 0.01
61 9 0.08
62 1 0.01
63 54 0.47
ACGTcount: A:0.32, C:0.32, G:0.08, T:0.27
Consensus pattern (62 bp):
CGCACATCATTCCCTACATCAACACATTCAGCACCAATTTATTTTACACAAACATCATGACA
Found at i:9087745 original size:15 final size:17
Alignment explanation
Indices: 9087725--9087757 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
9087715 CGGCCTGCCC
9087725 ATATTA-ATT-TTTTTT
1 ATATTATATTATTTTTT
9087740 ATATTATATTATTTTTT
1 ATATTATATTATTTTTT
9087757 A
1 A
9087758 CATAATTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 3 0.19
17 7 0.44
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
ATATTATATTATTTTTT
Found at i:9088396 original size:30 final size:30
Alignment explanation
Indices: 9088360--9088417 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
9088350 AAGAAAATAT
9088360 ATTTTGTTTAACTTGACTTGCAAGCAATTC
1 ATTTTGTTTAACTTGACTTGCAAGCAATTC
9088390 ATTTTGTTTAACTTGACTTGCAAGCAAT
1 ATTTTGTTTAACTTGACTTGCAAGCAAT
9088418 ATATTTAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.43
Consensus pattern (30 bp):
ATTTTGTTTAACTTGACTTGCAAGCAATTC
Found at i:9090455 original size:40 final size:40
Alignment explanation
Indices: 9090406--9090520 Score: 112
Period size: 37 Copynumber: 2.9 Consensus size: 40
9090396 TTTGGCACCT
*
9090406 AGTGCCTCATTGGATAATTCGAAGTAGTAAATTGACATTC
1 AGTGCCTCATTGGATAATCCGAAGTAGTAAATTGACATTC
* * * * *
9090446 AGTGTCTCATTGGTTAAACCG-A--AGTAAATTGGCATTG
1 AGTGCCTCATTGGATAATCCGAAGTAGTAAATTGACATTC
* *
9090483 AGTGCCTCATCGAATAAATCCGAAGT-GATAAATTGACA
1 AGTGCCTCATTGGAT-AATCCGAAGTAG-TAAATTGACA
9090521 CCCAGTGTCT
Statistics
Matches: 58, Mismatches: 12, Indels: 9
0.73 0.15 0.11
Matches are distributed among these distances:
37 24 0.41
38 5 0.09
39 2 0.03
40 18 0.31
41 9 0.16
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.30
Consensus pattern (40 bp):
AGTGCCTCATTGGATAATCCGAAGTAGTAAATTGACATTC
Found at i:9091470 original size:23 final size:23
Alignment explanation
Indices: 9091408--9091470 Score: 58
Period size: 23 Copynumber: 2.7 Consensus size: 23
9091398 CGTGCTTTTC
* *
9091408 TTCTTTATTTTTCTTTCTTTCTT
1 TTCTTTCTTTTTCTTTTTTTCTT
* *
9091431 TTCTTTCCAATTTT-TTTTTTGC-T
1 TTCTTT-C-TTTTTCTTTTTTTCTT
9091454 TTCTTTCTTTTTCTTTT
1 TTCTTTCTTTTTCTTTT
9091471 ATTATACTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
21 4 0.12
22 5 0.16
23 13 0.41
24 6 0.19
25 4 0.12
ACGTcount: A:0.05, C:0.17, G:0.02, T:0.76
Consensus pattern (23 bp):
TTCTTTCTTTTTCTTTTTTTCTT
Found at i:9091516 original size:26 final size:25
Alignment explanation
Indices: 9091469--9091517 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
9091459 TCTTTTTCTT
* *
9091469 TTATTATACTTACTTTATTATTATA
1 TTATTATACTTACTTAAATATTATA
*
9091494 TTATATATATTTACTTAAATATTA
1 TTAT-TATACTTACTTAAATATTA
9091518 AGTAAAACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 4 0.20
26 16 0.80
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (25 bp):
TTATTATACTTACTTAAATATTATA
Found at i:9094564 original size:24 final size:24
Alignment explanation
Indices: 9094537--9094585 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
9094527 CTTTCATGAG
9094537 CACTAGCATATTTTCATTTGAGTA
1 CACTAGCATATTTTCATTTGAGTA
9094561 CACTAGCATATTTTCATTTGAGTA
1 CACTAGCATATTTTCATTTGAGTA
9094585 C
1 C
9094586 TTACCCTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (24 bp):
CACTAGCATATTTTCATTTGAGTA
Found at i:9095176 original size:25 final size:25
Alignment explanation
Indices: 9095147--9095208 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
9095137 AATTCATATT
9095147 TGGGAATGCTCATACAAG-CACATAA
1 TGGGAA-GCTCATACAAGCCACATAA
* * * *
9095172 TGGGAAGCTCTTTCGAGCCATATAA
1 TGGGAAGCTCATACAAGCCACATAA
9095197 TGGGAAGCTCAT
1 TGGGAAGCTCAT
9095209 GTGAGCCATG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 8 0.26
25 23 0.74
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.24
Consensus pattern (25 bp):
TGGGAAGCTCATACAAGCCACATAA
Found at i:9095214 original size:25 final size:25
Alignment explanation
Indices: 9095168--9095228 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 25
9095158 ATACAAGCAC
*
9095168 ATAATGGGAAGCTCTTTCGAGCCAT
1 ATAATGGGAAGCTCTGTCGAGCCAT
9095193 ATAATGGGAAGCTCATGT-GAGCCAT
1 ATAATGGGAAGCTC-TGTCGAGCCAT
* *
9095218 GTAACGGGAAG
1 ATAATGGGAAG
9095229 TTCCGTAGAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
25 30 0.94
26 2 0.06
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.23
Consensus pattern (25 bp):
ATAATGGGAAGCTCTGTCGAGCCAT
Found at i:9095323 original size:25 final size:25
Alignment explanation
Indices: 9095292--9095351 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
9095282 TGAGCTAATA
*
9095292 TCGGGAAGCTCCGGAGAGCCTTTAAT
1 TCGGGAAGCTCCGAAGAGCCTTT-AT
**
9095318 T-GGGAAGCTCTTAAGAGCCTTTAT
1 TCGGGAAGCTCCGAAGAGCCTTTAT
9095342 TCGGGAAGCT
1 TCGGGAAGCT
9095352 TCGAGGAGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
24 3 0.10
25 26 0.87
26 1 0.03
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (25 bp):
TCGGGAAGCTCCGAAGAGCCTTTAT
Found at i:9095680 original size:20 final size:19
Alignment explanation
Indices: 9095655--9095694 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
9095645 GTCAATTACA
*
9095655 CAATTCACATACATAAGATT
1 CAATTCAAATACATAA-ATT
*
9095675 CAATTCAAATATATAAATT
1 CAATTCAAATACATAAATT
9095694 C
1 C
9095695 TCAATTTAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.47, C:0.17, G:0.03, T:0.33
Consensus pattern (19 bp):
CAATTCAAATACATAAATT
Found at i:9096378 original size:27 final size:27
Alignment explanation
Indices: 9096322--9096372 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
9096312 CTTCGTCTCC
*
9096322 TTCTTTCTCCCTTTTCTTTTTCTTTCT
1 TTCTTTCTCCCTTTTCTTTTCCTTTCT
**
9096349 TTCTTTCTTTCTTTT-TTTTCCTTT
1 TTCTTTCTCCCTTTTCTTTTCCTTT
9096373 TGTTTCGTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 8 0.38
27 13 0.62
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (27 bp):
TTCTTTCTCCCTTTTCTTTTCCTTTCT
Found at i:9096445 original size:18 final size:20
Alignment explanation
Indices: 9096424--9096462 Score: 64
Period size: 18 Copynumber: 2.0 Consensus size: 20
9096414 TTATTTTGTT
9096424 TTATTATA-CAT-TAATATA
1 TTATTATATCATATAATATA
9096442 TTATTATATCATATAATATA
1 TTATTATATCATATAATATA
9096462 T
1 T
9096463 ATACTTAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 8 0.42
19 3 0.16
20 8 0.42
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (20 bp):
TTATTATATCATATAATATA
Found at i:9100977 original size:41 final size:37
Alignment explanation
Indices: 9100875--9100980 Score: 104
Period size: 37 Copynumber: 2.8 Consensus size: 37
9100865 AATTCAAAGT
* **
9100875 AGTAAATTGACACCCAGTGTCTCCTCGGTTAAACCAA
1 AGTAAATTGACACCCAGTGTCTCATCGAATAAACCAA
* * * *
9100912 AGTAAATTGGCACCTAGTGCCTCATCGAATAATTCCGAA
1 AGTAAATTGACACCCAGTGTCTCATCGAATAA-ACC-AA
*
9100951 GTGATAAATTGACACCCAGTGTCTCATCGA
1 -AG-TAAATTGACACCCAGTGTCTCATCGA
9100981 CTAGAAGTCG
Statistics
Matches: 54, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
37 26 0.48
38 2 0.04
39 2 0.04
40 1 0.02
41 23 0.43
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (37 bp):
AGTAAATTGACACCCAGTGTCTCATCGAATAAACCAA
Found at i:9101872 original size:14 final size:14
Alignment explanation
Indices: 9101853--9101910 Score: 55
Period size: 14 Copynumber: 3.9 Consensus size: 14
9101843 GCGTTTCTTC
9101853 TTTCTTTTTCTTTA
1 TTTCTTTTTCTTTA
9101867 TTTC-TTTTCTTTCCAA
1 TTTCTTTTTCTTT---A
* *
9101883 TTTTGTTTTTCTTTC
1 -TTTCTTTTTCTTTA
9101898 TTTCTTTTTCTTT
1 TTTCTTTTTCTTT
9101911 TATTATACTT
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
13 8 0.22
14 16 0.44
16 1 0.03
17 3 0.08
18 8 0.22
ACGTcount: A:0.05, C:0.17, G:0.02, T:0.76
Consensus pattern (14 bp):
TTTCTTTTTCTTTA
Found at i:9107167 original size:50 final size:46
Alignment explanation
Indices: 9107081--9107183 Score: 125
Period size: 50 Copynumber: 2.2 Consensus size: 46
9107071 AAAATTATAG
* *
9107081 AAAAATTTTAAATTCTATTGAGAGTTTTATAATTTCAAAGCAAAAT
1 AAAAAATTTAAATTCTATTGAGAGTTTTATAATTTCAAAACAAAAT
* **
9107127 ACAAAATTTAAATTCTATTCAGAATGAGTTTTATGCTTTCAAAACAAAAT
1 AAAAAATTTAAATTCTATT--G-A-GAGTTTTATAATTTCAAAACAAAAT
9107177 AAAAAAT
1 AAAAAAT
9107184 CTTGTGCCAA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
46 17 0.36
48 1 0.02
49 1 0.02
50 28 0.60
ACGTcount: A:0.48, C:0.09, G:0.08, T:0.36
Consensus pattern (46 bp):
AAAAAATTTAAATTCTATTGAGAGTTTTATAATTTCAAAACAAAAT
Found at i:9107930 original size:9 final size:9
Alignment explanation
Indices: 9107834--9107919 Score: 54
Period size: 9 Copynumber: 9.6 Consensus size: 9
9107824 CATGTGGCAA
9107834 AAAAATTAT
1 AAAAATTAT
9107843 AAAAA--AT
1 AAAAATTAT
*
9107850 AAAAATCAAT
1 AAAAAT-TAT
*
9107860 AAAAGTTAT
1 AAAAATTAT
9107869 AAAAATTATT
1 AAAAATTA-T
* **
9107879 TAATTTTAAT
1 AAAAATT-AT
9107889 AAAAA-TAT
1 AAAAATTAT
9107897 AAAAA-TATT
1 AAAAATTA-T
*
9107906 AAAAATTAG
1 AAAAATTAT
9107915 AAAAA
1 AAAAA
9107920 AAATTATAAA
Statistics
Matches: 60, Mismatches: 10, Indels: 14
0.71 0.12 0.17
Matches are distributed among these distances:
7 7 0.12
8 9 0.15
9 26 0.43
10 17 0.28
11 1 0.02
ACGTcount: A:0.66, C:0.01, G:0.02, T:0.30
Consensus pattern (9 bp):
AAAAATTAT
Found at i:9108190 original size:23 final size:23
Alignment explanation
Indices: 9108155--9108199 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
9108145 TTTTCATGAC
9108155 TTTATAAAATTTTACAATTTTTT
1 TTTATAAAATTTTACAATTTTTT
** *
9108178 TTTATAATTTTTTACGATTTTT
1 TTTATAAAATTTTACAATTTTT
9108200 CTAATTTTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.64
Consensus pattern (23 bp):
TTTATAAAATTTTACAATTTTTT
Found at i:9111204 original size:19 final size:18
Alignment explanation
Indices: 9111168--9111216 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
9111158 ATTTTTAAAA
9111168 ATTAAAAATCATTAAATTT
1 ATTAAAAAT-ATTAAATTT
*
9111187 ATTAAAAATATATTAATTT
1 ATTAAAAATAT-TAAATTT
*
9111206 -TAAAAAATATT
1 ATTAAAAATATT
9111217 TTTAAAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 1 0.04
18 11 0.41
19 15 0.56
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTAAAAATATTAAATTT
Found at i:9111665 original size:20 final size:20
Alignment explanation
Indices: 9111640--9111689 Score: 73
Period size: 22 Copynumber: 2.4 Consensus size: 20
9111630 CGGCATCACC
9111640 TATAAAAAATAATATTTTAA
1 TATAAAAAATAATATTTTAA
9111660 TATAAATAAAATAATATTTTAA
1 TAT-AA-AAAATAATATTTTAA
*
9111682 TCTAAAAA
1 TATAAAAA
9111690 GGGGTGACGT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
20 6 0.22
21 4 0.15
22 17 0.63
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (20 bp):
TATAAAAAATAATATTTTAA
Found at i:9111672 original size:22 final size:22
Alignment explanation
Indices: 9111645--9111687 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
9111635 TCACCTATAA
9111645 AAAATAATATTTTAATATAAAT
1 AAAATAATATTTTAATATAAAT
*
9111667 AAAATAATATTTTAATCTAAA
1 AAAATAATATTTTAATATAAA
9111688 AAGGGGTGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (22 bp):
AAAATAATATTTTAATATAAAT
Found at i:9115977 original size:23 final size:23
Alignment explanation
Indices: 9115950--9115993 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
9115940 TTCACACCAA
9115950 AATTTGGATAGCATAAATACATC
1 AATTTGGATAGCATAAATACATC
* *
9115973 AATTTGGGTAGCATATATACA
1 AATTTGGATAGCATAAATACA
9115994 ACAGTTTGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.41, C:0.11, G:0.16, T:0.32
Consensus pattern (23 bp):
AATTTGGATAGCATAAATACATC
Found at i:9116001 original size:23 final size:23
Alignment explanation
Indices: 9115950--9116001 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
9115940 TTCACACCAA
*
9115950 AATTTGGATAGCATAAATACATC
1 AATTTGGATAGCATAAATACAAC
* *
9115973 AATTTGGGTAGCATATATACAAC
1 AATTTGGATAGCATAAATACAAC
*
9115996 AGTTTG
1 AATTTG
9116002 AGCAACATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (23 bp):
AATTTGGATAGCATAAATACAAC
Found at i:9116055 original size:23 final size:23
Alignment explanation
Indices: 9116024--9116166 Score: 146
Period size: 23 Copynumber: 6.1 Consensus size: 23
9116014 ACACCAAAAC
*
9116024 TGGATAGCATATATGCAACAAAT
1 TGGACAGCATATATGCAACAAAT
* * *
9116047 TGGGCAGCATTTAAGCATTA-AAAT
1 TGGACAGCATATATGCA--ACAAAT
*
9116071 TGGACAGCATATATGTAACAAAT
1 TGGACAGCATATATGCAACAAAT
*
9116094 TGGACAGCATATATGTAACAAAT
1 TGGACAGCATATATGCAACAAAT
* * *
9116117 TGGATAGCATTTAAT-CATCAAAAT
1 TGGACAGCATAT-ATGCAAC-AAAT
*
9116141 TGGACAGCATATATGTAACAAAT
1 TGGACAGCATATATGCAACAAAT
9116164 TGG
1 TGG
9116167 TTCAACTCAT
Statistics
Matches: 98, Mismatches: 16, Indels: 12
0.78 0.13 0.10
Matches are distributed among these distances:
22 1 0.01
23 61 0.62
24 35 0.36
25 1 0.01
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28
Consensus pattern (23 bp):
TGGACAGCATATATGCAACAAAT
Found at i:9116058 original size:47 final size:48
Alignment explanation
Indices: 9115981--9116103 Score: 124
Period size: 47 Copynumber: 2.6 Consensus size: 48
9115971 TCAATTTGGG
* ** * * *
9115981 TAGCATATATACAACAGTTTGAGCAACATTTTTA-CACCAAAACTGGA
1 TAGCATATATGCAACAAATTGGGCAGCATTTTAAGCACCAAAACTGGA
** *
9116028 TAGCATATATGCAACAAATTGGGCAGCA-TTTAAGCATTAAAATTGGA
1 TAGCATATATGCAACAAATTGGGCAGCATTTTAAGCACCAAAACTGGA
* * *
9116075 CAGCATATATGTAACAAATTGGACAGCAT
1 TAGCATATATGCAACAAATTGGGCAGCAT
9116104 ATATGTAACA
Statistics
Matches: 62, Mismatches: 12, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
46 4 0.06
47 58 0.94
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (48 bp):
TAGCATATATGCAACAAATTGGGCAGCATTTTAAGCACCAAAACTGGA
Found at i:9116103 original size:70 final size:70
Alignment explanation
Indices: 9116024--9116166 Score: 232
Period size: 70 Copynumber: 2.0 Consensus size: 70
9116014 ACACCAAAAC
* * *
9116024 TGGATAGCATATATGCAACAAATTGGGCAGCATTTAAGCATTAAAATTGGACAGCATATATGTAA
1 TGGACAGCATATATGCAACAAATTGGACAGCATTTAAGCATCAAAATTGGACAGCATATATGTAA
9116089 CAAAT
66 CAAAT
* * *
9116094 TGGACAGCATATATGTAACAAATTGGATAGCATTTAATCATCAAAATTGGACAGCATATATGTAA
1 TGGACAGCATATATGCAACAAATTGGACAGCATTTAAGCATCAAAATTGGACAGCATATATGTAA
9116159 CAAAT
66 CAAAT
9116164 TGG
1 TGG
9116167 TTCAACTCAT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
70 67 1.00
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28
Consensus pattern (70 bp):
TGGACAGCATATATGCAACAAATTGGACAGCATTTAAGCATCAAAATTGGACAGCATATATGTAA
CAAAT
Found at i:9118223 original size:14 final size:15
Alignment explanation
Indices: 9118204--9118232 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
9118194 TCACGAAACT
9118204 TTCACACAT-ATAAA
1 TTCACACATAATAAA
9118218 TTCACACATAATAAA
1 TTCACACATAATAAA
9118233 CACAGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:9121206 original size:22 final size:22
Alignment explanation
Indices: 9121180--9121224 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
9121170 AGTTGGAGTC
9121180 TGTTAAATTTTCTTTTTAGTGT
1 TGTTAAATTTTCTTTTTAGTGT
9121202 TGTTAAATTTTCTTTTTAGTGT
1 TGTTAAATTTTCTTTTTAGTGT
9121224 T
1 T
9121225 ACTTTTTGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.18, C:0.04, G:0.13, T:0.64
Consensus pattern (22 bp):
TGTTAAATTTTCTTTTTAGTGT
Found at i:9125822 original size:3 final size:3
Alignment explanation
Indices: 9125816--9125873 Score: 100
Period size: 3 Copynumber: 19.7 Consensus size: 3
9125806 TAAATAAATA
*
9125816 AAG AAG AAG AAG AAG AAA AAG AAG AAG AAG AAG -AG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
9125863 AAG AAG AAG AA
1 AAG AAG AAG AA
9125874 TGAAAATTTT
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
2 2 0.04
3 50 0.96
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:9136116 original size:24 final size:23
Alignment explanation
Indices: 9136085--9136135 Score: 84
Period size: 24 Copynumber: 2.2 Consensus size: 23
9136075 CATAATTATC
*
9136085 AAGTTGGCATAGTATAAAATATT
1 AAGTTGGCATAGTACAAAATATT
9136108 AAGTCTGGCATAGTACAAAATATT
1 AAGT-TGGCATAGTACAAAATATT
9136132 AAGT
1 AAGT
9136136 AAAAATATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
23 4 0.15
24 22 0.85
ACGTcount: A:0.43, C:0.08, G:0.18, T:0.31
Consensus pattern (23 bp):
AAGTTGGCATAGTACAAAATATT
Found at i:9142808 original size:14 final size:14
Alignment explanation
Indices: 9142789--9142816 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
9142779 AAACCCTTGC
9142789 AAACTGAGAAAATA
1 AAACTGAGAAAATA
9142803 AAACTGAGAAAATA
1 AAACTGAGAAAATA
9142817 GAGTTTAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AAACTGAGAAAATA
Found at i:9142856 original size:24 final size:24
Alignment explanation
Indices: 9142811--9142862 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
9142801 TAAAACTGAG
* *
9142811 AAAATAGAGTTTAAGTGGGAAACT
1 AAAATAGAGTTTAAGTGAGAAAAT
* *
9142835 AAAATAGAGTTTCATTGAGAAAAT
1 AAAATAGAGTTTAAGTGAGAAAAT
9142859 AAAA
1 AAAA
9142863 CTGAGAAACT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.52, C:0.04, G:0.19, T:0.25
Consensus pattern (24 bp):
AAAATAGAGTTTAAGTGAGAAAAT
Found at i:9146189 original size:12 final size:12
Alignment explanation
Indices: 9146172--9146197 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
9146162 CTTATTAAAC
9146172 GTGATTATTCTT
1 GTGATTATTCTT
9146184 GTGATTATTCTT
1 GTGATTATTCTT
9146196 GT
1 GT
9146198 TGATGTAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.08, G:0.19, T:0.58
Consensus pattern (12 bp):
GTGATTATTCTT
Found at i:9150775 original size:4 final size:4
Alignment explanation
Indices: 9150753--9150788 Score: 54
Period size: 4 Copynumber: 8.8 Consensus size: 4
9150743 AATGGCATAG
*
9150753 AAAT AATAT AAAC AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AA-AT AAAT AAAT AAAT AAAT AAAT AAAT AAA
9150789 AACAAATCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 25 0.86
5 4 0.14
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:9150786 original size:26 final size:25
Alignment explanation
Indices: 9150753--9150801 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
9150743 AATGGCATAG
*
9150753 AAATAATATAAACAAATAAATAAAT
1 AAATAATAAAAACAAATAAATAAAT
*
9150778 AAATAAATAAAAACAAATCAATAA
1 AAAT-AATAAAAACAAATAAATAA
9150802 CATGCAAAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.73, C:0.06, G:0.00, T:0.20
Consensus pattern (25 bp):
AAATAATAAAAACAAATAAATAAAT
Found at i:9150983 original size:30 final size:30
Alignment explanation
Indices: 9150947--9151003 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
9150937 CATGTACATA
*
9150947 TATAAAAAA-ATTATATACATATATATAGAT
1 TATAAAAAAGATAAT-TACATATATATAGAT
9150977 TATAAAAAAGATAATTACATATATATA
1 TATAAAAAAGATAATTACATATATATA
9151004 TAAACAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.35
Consensus pattern (30 bp):
TATAAAAAAGATAATTACATATATATAGAT
Found at i:9151063 original size:23 final size:23
Alignment explanation
Indices: 9151037--9151080 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
9151027 ATATTAAAAT
**
9151037 TAATTAATTTAGAATAATATATA
1 TAATTAATGAAGAATAATATATA
*
9151060 TAATTTATGAAGAATAATATA
1 TAATTAATGAAGAATAATATA
9151081 AGAAAACATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (23 bp):
TAATTAATGAAGAATAATATATA
Found at i:9151065 original size:19 final size:19
Alignment explanation
Indices: 9151037--9151081 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
9151027 ATATTAAAAT
*
9151037 TAAT-TAATTTA-GAATAA
1 TAATATAATTTATGAAGAA
9151054 TATATATAATTTATGAAGAA
1 TA-ATATAATTTATGAAGAA
9151074 TAATATAA
1 TAATATAA
9151082 GAAAACATAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 2 0.08
18 2 0.08
19 13 0.54
20 7 0.29
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (19 bp):
TAATATAATTTATGAAGAA
Found at i:9151187 original size:17 final size:17
Alignment explanation
Indices: 9151165--9151208 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
9151155 TAGTAAATAA
9151165 AAAATGTATATGTATAT
1 AAAATGTATATGTATAT
*
9151182 AAAATGTAAATGTATAT
1 AAAATGTATATGTATAT
*
9151199 -ATATGTATAT
1 AAAATGTATAT
9151209 AAAAGTTATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 8 0.33
17 16 0.67
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (17 bp):
AAAATGTATATGTATAT
Found at i:9151241 original size:60 final size:56
Alignment explanation
Indices: 9151118--9151242 Score: 135
Period size: 60 Copynumber: 2.1 Consensus size: 56
9151108 CAAAGTAAAA
* *
9151118 AATATATAAAAGTATATATATATATGCATATAAAAGTTAGTAAATAAAAAATGTAT
1 AATATATAAAAGTATATATATATATGCATATAAAAGTTAGCAAATAAAAAATGAAT
* * * *
9151174 ATGTATATAAAATGTAAATGTATATATATGTATATAAAAGTTATGCAAATAGAATAAT-AAT
1 A-ATATATAAAA-GT--ATATATATATATGCATATAAAAGTTA-GCAAATA-AAAAATGAAT
9151235 AATATATA
1 AATATATA
9151243 TATATAATAT
Statistics
Matches: 56, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
56 1 0.02
57 9 0.16
58 2 0.04
60 30 0.54
61 9 0.16
62 5 0.09
ACGTcount: A:0.54, C:0.02, G:0.10, T:0.35
Consensus pattern (56 bp):
AATATATAAAAGTATATATATATATGCATATAAAAGTTAGCAAATAAAAAATGAAT
Found at i:9151351 original size:12 final size:12
Alignment explanation
Indices: 9151334--9151367 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
9151324 GTATATATAG
**
9151334 TAATAATAATGA
1 TAATAATAACAA
9151346 TAATAATAACAA
1 TAATAATAACAA
9151358 TAATAATAAC
1 TAATAATAAC
9151368 TTAATAACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.62, C:0.06, G:0.03, T:0.29
Consensus pattern (12 bp):
TAATAATAACAA
Found at i:9151374 original size:20 final size:20
Alignment explanation
Indices: 9151349--9151408 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 20
9151339 ATAATGATAA
9151349 TAATAACAATAATAATAACT
1 TAATAACAATAATAATAACT
* *
9151369 TAATAACAAGAA-AATCAAATT
1 TAATAACAATAATAAT--AACT
*
9151390 TAATAAAAATAAATAATAA
1 TAATAACAAT-AATAATAA
9151409 ATAATAAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
19 3 0.09
20 11 0.34
21 13 0.41
22 2 0.06
23 3 0.09
ACGTcount: A:0.65, C:0.07, G:0.02, T:0.27
Consensus pattern (20 bp):
TAATAACAATAATAATAACT
Found at i:9151711 original size:23 final size:22
Alignment explanation
Indices: 9151668--9151725 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
9151658 AAAGGGTATC
* *
9151668 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
9151689 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
9151712 TGCAAATCATATCT
1 TACAAATCATATCT
9151726 AAGATTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.09
22 19 0.59
23 10 0.31
ACGTcount: A:0.43, C:0.17, G:0.05, T:0.34
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:9151743 original size:21 final size:19
Alignment explanation
Indices: 9151681--9151751 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 19
9151671 AAATTAAATC
*
9151681 TCTAAGATTACAAAATCATA
1 TCTAAGATTGC-AAATCATA
9151701 TCTTCTAAGATTGCAAATCATA
1 ---TCTAAGATTGCAAATCATA
9151723 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCA-A-ATCATA
*
9151744 TGTAAGAT
1 TCTAAGAT
9151752 CACATCTAAG
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
19 12 0.27
20 1 0.02
21 13 0.30
22 8 0.18
23 10 0.23
ACGTcount: A:0.41, C:0.14, G:0.10, T:0.35
Consensus pattern (19 bp):
TCTAAGATTGCAAATCATA
Found at i:9151907 original size:15 final size:14
Alignment explanation
Indices: 9151877--9151906 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
9151867 GGACTTAGAC
*
9151877 TTGGTTTTATTATT
1 TTGGGTTTATTATT
9151891 TTGGGTTTATTATT
1 TTGGGTTTATTATT
9151905 TT
1 TT
9151907 TTTGTGAGCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.13, C:0.00, G:0.17, T:0.70
Consensus pattern (14 bp):
TTGGGTTTATTATT
Found at i:9155818 original size:30 final size:29
Alignment explanation
Indices: 9155784--9155840 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
9155774 CTAGACTCTT
9155784 CCACAAAGGCTGAACACACAGCCATGTGAG
1 CCACAAAGGCTG-ACACACAGCCATGTGAG
** *
9155814 CCACATGGGCTGTCACACAGCCATGTG
1 CCACAAAGGCTGACACACAGCCATGTG
9155841 CCAAATCGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 14 0.58
30 10 0.42
ACGTcount: A:0.30, C:0.32, G:0.25, T:0.14
Consensus pattern (29 bp):
CCACAAAGGCTGACACACAGCCATGTGAG
Found at i:9163827 original size:5 final size:6
Alignment explanation
Indices: 9163813--9163837 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
9163803 TTTCAAAACA
9163813 TTTTAT TTTTAT TTTTAT TTTTAT T
1 TTTTAT TTTTAT TTTTAT TTTTAT T
9163838 CCGGAAGCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTAT
Found at i:9164355 original size:20 final size:20
Alignment explanation
Indices: 9164319--9164356 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
9164309 AACCTGATGC
9164319 AATGCAATATACAAATATGA
1 AATGCAATATACAAATATGA
*
9164339 AATGCTATA-ACATAATAT
1 AATGCAATATACA-AATAT
9164357 CATGCATGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.53, C:0.11, G:0.08, T:0.29
Consensus pattern (20 bp):
AATGCAATATACAAATATGA
Found at i:9168446 original size:49 final size:49
Alignment explanation
Indices: 9168386--9168570 Score: 132
Period size: 50 Copynumber: 3.8 Consensus size: 49
9168376 AATAATAACA
* *
9168386 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATATTTCTTGTAC
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGATATTTCTTGTAC
* * * **
9168435 TGCCAATGCCATAT-CCAGATATGGTCATACATGGG--AGTTCTCATATC
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGATATTTCTTGTA-C
* * * * *
9168482 GGTGCCCATGCCATATCCCAGACATGATCTT--ATGGGCGACCTCTCATCTTG--G
1 --TGCCAATGCCATATCCCAGACATGGTCTTACAT-GG-GA--TAT-TTCTTGTAC
*
9168534 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGA
9168571 CCTCTCATAA
Statistics
Matches: 103, Mismatches: 20, Indels: 25
0.70 0.14 0.17
Matches are distributed among these distances:
46 7 0.07
47 1 0.01
48 21 0.20
49 27 0.26
50 40 0.39
51 2 0.02
52 2 0.02
55 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (49 bp):
TGCCAATGCCATATCCCAGACATGGTCTTACATGGGATATTTCTTGTAC
Found at i:9168528 original size:50 final size:49
Alignment explanation
Indices: 9168435--9168579 Score: 150
Period size: 50 Copynumber: 2.9 Consensus size: 49
9168425 TTTCTTGTAC
* * * **
9168435 TGCCAATGCCATAT-CCAGATATGGTCATACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATATCCCAGACATGATCTTA-ATGGGACCTCTCATATCGG
* * *
9168484 TGCCCATGCCATATCCCAGACATGATCTT-ATGGGCGACCTCTCATCTTGG
1 TGCCAATGCCATATCCCAGACATGATCTTAAT-GG-GACCTCTCATATCGG
* *
9168534 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATA
1 TGCCAATGCCATATCCCAGACATGATCTTA-ATGGGACCTCTCATA
9168580 ATCTCACTGA
Statistics
Matches: 79, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
48 2 0.03
49 15 0.19
50 58 0.73
51 2 0.03
52 2 0.03
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (49 bp):
TGCCAATGCCATATCCCAGACATGATCTTAATGGGACCTCTCATATCGG
Found at i:9177263 original size:50 final size:50
Alignment explanation
Indices: 9177196--9177341 Score: 184
Period size: 50 Copynumber: 2.9 Consensus size: 50
9177186 TTTTGTGTAC
* * * **
9177196 TGCCAATGCCATATCCCAGATATGGTCATACAAGGGAGTTCTCATATTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAAGGGACCTCTCATATTGG
* * ** *
9177246 TGCCCATGCCATGTCCCAGACATTGTCTTACGGGGGACCTCTCATTTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAAGGGACCTCTCATATTGG
* *
9177296 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAAGGGACCTCTCATA
9177342 ATCTCAATGA
Statistics
Matches: 80, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 80 1.00
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAAGGGACCTCTCATATTGG
Found at i:9187601 original size:29 final size:30
Alignment explanation
Indices: 9187553--9187619 Score: 102
Period size: 29 Copynumber: 2.3 Consensus size: 30
9187543 ACCAAAAAAA
9187553 GCCGATTTTTTTAAAAATTTACCGAAATGG
1 GCCGATTTTTTTAAAAATTTACCGAAATGG
**
9187583 GCCGATTTTTTT-ATTATTTACCGAAATGG
1 GCCGATTTTTTTAAAAATTTACCGAAATGG
9187612 GCC-ATTTT
1 GCCGATTTT
9187620 CTGGGAAATC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 5 0.14
29 18 0.51
30 12 0.34
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.42
Consensus pattern (30 bp):
GCCGATTTTTTTAAAAATTTACCGAAATGG
Found at i:9187904 original size:22 final size:22
Alignment explanation
Indices: 9187876--9187926 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
9187866 CTCTCTAATC
*
9187876 CTCTCAATTTCCTTCTAAAATT
1 CTCTCAATTTCCTTCCAAAATT
9187898 CTCTCAATTTCCTTCCAAAATT
1 CTCTCAATTTCCTTCCAAAATT
9187920 CTCTCAA
1 CTCTCAA
9187927 ATCCATATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.27, C:0.31, G:0.00, T:0.41
Consensus pattern (22 bp):
CTCTCAATTTCCTTCCAAAATT
Found at i:9189087 original size:7 final size:7
Alignment explanation
Indices: 9189075--9189099 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
9189065 AGTCGATTGA
9189075 TATTTAG
1 TATTTAG
9189082 TATTTAG
1 TATTTAG
9189089 TATTTAG
1 TATTTAG
9189096 TATT
1 TATT
9189100 ATGTATAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:9190217 original size:25 final size:25
Alignment explanation
Indices: 9190187--9190255 Score: 102
Period size: 25 Copynumber: 2.7 Consensus size: 25
9190177 TTTAAATTTA
*
9190187 TTATTTGATGTAATTAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
* *
9190212 TTATTTAATATAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
9190237 TCTATTTGATGTAATAAAA
1 T-TATTTGATGTAATAAAA
9190256 ACCCTAATTT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
25 23 0.61
26 15 0.39
ACGTcount: A:0.45, C:0.01, G:0.12, T:0.42
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:9190274 original size:18 final size:18
Alignment explanation
Indices: 9190251--9190293 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
9190241 TTTGATGTAA
* *
9190251 TAAAAACCCTAATTTATT
1 TAAAAACCCTAACTTAAT
9190269 TAAAAACCCTAACTTAAT
1 TAAAAACCCTAACTTAAT
9190287 TAAAAAC
1 TAAAAAC
9190294 TGTAACCCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.51, C:0.19, G:0.00, T:0.30
Consensus pattern (18 bp):
TAAAAACCCTAACTTAAT
Found at i:9190342 original size:35 final size:35
Alignment explanation
Indices: 9190296--9190363 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
9190286 TTAAAAACTG
* *
9190296 TAACCCTAACCTATTTTAATTAAAAACCCTAACCC
1 TAACCATAACCTAATTTAATTAAAAACCCTAACCC
*
9190331 TAACCATAACCTAATTTAATTAAAAATCCTAAC
1 TAACCATAACCTAATTTAATTAAAAACCCTAAC
9190364 TTAATTAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.44, C:0.26, G:0.00, T:0.29
Consensus pattern (35 bp):
TAACCATAACCTAATTTAATTAAAAACCCTAACCC
Found at i:9190361 original size:29 final size:29
Alignment explanation
Indices: 9190276--9190363 Score: 70
Period size: 35 Copynumber: 2.8 Consensus size: 29
9190266 ATTTAAAAAC
* * *
9190276 CCTAACTTAATTAAAAA-CTGTAACCCTAA
1 CCTAATTTAATTAAAAATC-CTAACCATAA
*
9190305 CCTATTTTAATTAAAAACCCTAACCCTAACCATAA
1 CCTAATTTAATTAAAAA---T---CCTAACCATAA
9190340 CCTAATTTAATTAAAAATCCTAAC
1 CCTAATTTAATTAAAAATCCTAAC
9190364 TTAATTAAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 14
0.71 0.08 0.21
Matches are distributed among these distances:
29 21 0.45
32 1 0.02
35 24 0.51
36 1 0.02
ACGTcount: A:0.44, C:0.25, G:0.01, T:0.30
Consensus pattern (29 bp):
CCTAATTTAATTAAAAATCCTAACCATAA
Found at i:9190367 original size:18 final size:18
Alignment explanation
Indices: 9190340--9190381 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
9190330 CTAACCATAA
*
9190340 CCTAATTTAATTAAAAAT
1 CCTAACTTAATTAAAAAT
9190358 CCTAACTTAATTAAAAAT
1 CCTAACTTAATTAAAAAT
9190376 CCTAAC
1 CCTAAC
9190382 CCTAACCTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.48, C:0.19, G:0.00, T:0.33
Consensus pattern (18 bp):
CCTAACTTAATTAAAAAT
Found at i:9190426 original size:76 final size:76
Alignment explanation
Indices: 9190258--9191658 Score: 1028
Period size: 76 Copynumber: 17.9 Consensus size: 76
9190248 TAATAAAAAC
* * ** *
9190258 CCTAATTTATTTAAAAACCCTAACTTAATTAAAAACTGTAACCCTAACCTATTTTAATTAAAAAC
1 CCTAACTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAC
9190323 CCTAACCCTAA
66 CCTAACCCTAA
* * *
9190334 CCATAACCTAATTTAATTAAAAATCCTAACTTAATTAAAAATCCTAACCCTAACCTAACTTAATT
1 CC-TAA-C----TTAATTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATT
9190399 AAAAACCCTAACCCTAA
60 AAAAACCCTAACCCTAA
*
9190416 CCTAACTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAGCCTAATTTAATTAAAAAC
1 CCTAACTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAC
9190481 CCTAACCCTAA
66 CCTAACCCTAA
*
9190492 CCTAACTTAATTAAAAACCTTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTA
1 CCTAACTTAATTAAAAA-C----CCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTA
9190557 AAAACCCTAACCCTAA
61 AAAACCCTAACCCTAA
** * *
9190573 CCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACATTAACTTAACT
1 CCTAACTTAATT--AAA----AACCCTAA-C----TTAATTAAAAACCCTAACCCTAACCTAATT
9190638 TAATTAAAAACCCTAA-CCTAA
55 TAATTAAAAACCCTAACCCTAA
* * * *
9190659 CTTAA-TTAAAAACCCTAACCCAAA-CCTAATTTAATTAAAAACCCTAACCCTAACCTAACTTAA
1 CCTAACTT---AA--TTAA---AAACCCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAA
**
9190722 TTAAAAACCCTAA-TTTAA
58 TTAAAAACCCTAACCCTAA
* * * * * *
9190740 -TTAA--AAACCCTAACCCTAA-CCTAATTTAATTAAAAACCCTAACCCTAACCTAACTTAATTA
1 CCTAACTTAA--TTAA---AAACCCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTA
9190801 AAAACCTAACCTTAACCCTAA
61 AAAA-C---CC-TAACCCTAA
* * *
9190822 CCTAAATTAACTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTTAAAAC
1 CCTAACTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAC
*
9190887 TCTAACCCTAA
66 CCTAACCCTAA
* *
9190898 CCTAACTTAATTAAAAA-CC---C-----T---AACCCTAATCCTAACCTAAATTAATTAAAAAC
1 CCTAACTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAC
*
9190951 CATAACCCTAA
66 CCTAACCCTAA
* * * **** * *
9190962 ACTAATTTAATTAAAAACCCTAACCTTAAACTAAATTAATTAAAACCCTAACTTGA-TTAA--AA
1 CCTAACTTAATTAAAAACCCTAA-CTT-AATTAAA--AACCCTAACCCTAACCTAATTTAATTAA
9191024 ACCCTAACCCTAACCCTAA
62 A----AACCCTAACCCTAA
* * * * * * *
9191043 CCTAATTTAATTAAAAACCCTAACCCTAACCTAACTTAA--TTAA---AAACTCTAACTTAATTA
1 CCTAACTTAATTAAAAACCCTAA-CTTAA-TTAA--AAACCCTAACCCTAAC-CTAATTTAATTA
9191103 AAAACCCTAACCCTAA
61 AAAACCCTAACCCTAA
* * *
9191119 CTTAATTTAATTTAAAACCCTAACCCTAACCTAACTTAATTAAAAACCTTAACCCTAACCTAATT
1 CCTAACTTAA-TT-AAA----AA--C---CCTAACTTAATTAAAAACCCTAACCCTAACCTAATT
*
9191184 TAATTAAAAACCCTAA-CTTAA
55 TAATTAAAAACCCTAACCCTAA
* * * * *
9191205 -TTAA--AAACTCTAACCCTAACCCTAACTTAATTAAAAACTCTAACCCTAACCCTAACTTAATT
1 CCTAACTTAA-T-TAA---AAACCCTAACTTAATTAAAAACCCTAACCCTAA-CCTAATTTAATT
9191267 AAAAACCCTAACCCTAA
60 AAAAACCCTAACCCTAA
* *
9191284 CCTAACTTAATTAAAAGCTCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAC
1 CCTAACTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAC
9191349 CCTAACCCTAA
66 CCTAACCCTAA
* * *
9191360 CCTGACTTAATT-AAAA----AA--T--CT---AACCCTAACCCTAACCTAAATTAATTAAAAAC
1 CCTAACTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAC
*
9191413 CCTAA-CTTAA
66 CCTAACCCTAA
* * * * *
9191423 -TTAA--AAACCTTAACCCTAA-CCTAATTTAATTAAAAACCCTAACCCTAACCTAACTTAATTA
1 CCTAACTTAA--TTAA---AAACCCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTA
9191484 AAAACCCTAACCCTAA
61 AAAACCCTAACCCTAA
*
9191500 CCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATGAAAAAATCCTAACCCTAACCTAAT
1 CCTAACTTAATTAAAAACCCTAA--CT----TAA--T--T--AAAAACCCTAACCCTAACCTAAT
9191565 TTAATTAAAAACCCTAACCCTAA
54 TTAATTAAAAACCCTAACCCTAA
* *
9191588 CCTAACTTAATTAAAAACCCTAAATTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAT
1 CCTAACTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAC
9191653 CCTAAC
66 CCTAAC
9191659 TTAATTAAAA
Statistics
Matches: 1095, Mismatches: 105, Indels: 250
0.76 0.07 0.17
Matches are distributed among these distances:
60 2 0.00
62 4 0.00
63 5 0.00
64 89 0.08
65 2 0.00
66 2 0.00
67 2 0.00
69 4 0.00
71 3 0.00
72 1 0.00
73 1 0.00
75 8 0.01
76 313 0.29
77 73 0.07
78 38 0.03
79 10 0.01
80 37 0.03
81 208 0.19
82 85 0.08
83 17 0.02
84 3 0.00
85 15 0.01
86 25 0.02
87 72 0.07
88 74 0.07
90 1 0.00
91 1 0.00
ACGTcount: A:0.46, C:0.26, G:0.00, T:0.27
Consensus pattern (76 bp):
CCTAACTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAC
CCTAACCCTAA
Found at i:9190427 original size:58 final size:58
Alignment explanation
Indices: 9190276--9191658 Score: 1231
Period size: 58 Copynumber: 25.4 Consensus size: 58
9190266 ATTTAAAAAC
** **
9190276 CCTAACTTAATTAAAAACTGTAACCCTAACCTATTTTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAA
* * * * *
9190334 CCATAACCTAATT--TAA--TTAA---AAATCCTAACTTAATTAAAAATCCTAACCCTAA
1 CC-TAACTTAATTAAAAACCCTAACCCTAA-CCTAACTTAATTAAAAACCCTAACCCTAA
9190387 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATT--AAA----AA--C---
1 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAA
* *
9190434 CCTAACTTAATTAAAAACCCTAACCCTAGCCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAA
*
9190492 CCTAACTTAATTAAAAA-CCT-----TAACCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAA
*
9190544 CCTAATTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAA
* ** *
9190602 CCTAATTTAATTAAAAACCCTAACATTAACTTAACTTAATT--AAA----AACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAA
* *
9190654 CCTAACTTAATTAAAAACCCTAACCCAAACCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAA
9190712 CCTAACTTAATT--AAA----AACCCTAA--T---TTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAA
* *
9190759 CCTAATTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAA-CCTAACCTTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAA
* *
9190816 CCCTAACCTAAATT---AA--CTAA---AAACCCTAACTTAATTAAAAACCCTAACCCTAA
1 -CCTAA-CTTAATTAAAAACCCTAACCCTAA-CCTAACTTAATTAAAAACCCTAACCCTAA
* * *
9190869 CCTAATTTAATTTAAAACTCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAA
* * * *
9190927 TCCTAACCTAAATTAATTAAAAACCATAACCCTAAACTAATTTAATTAAAAACCCTAACCTTAA
1 -CCTAA-C----TTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAA
* * * * * *****
9190991 ACTAAATTAATT-AAAACCCTAA-CTTGA-TTAA---AAACCCTAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAA
*
9191043 CCTAATTTAATTAAAAACCCTAACCCTAACCTAACTTAATT--AAA----AA--CT--
1 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAA
* * *
9191091 -CTAACTTAATTAAAAACCCTAACCCTAACTTAATTTAATTTAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAA
* *
9191148 CCTAACTTAATTAAAAACCTTAACCCTAACCTAATTTAATT--AAA----AA--C---
1 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAA
* *
9191195 CCTAACTTAATTAAAAACTCTAACCCTAACCCTAACTTAATTAAAAACTCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA-CCTAACTTAATTAAAAACCCTAACCCTAA
*
9191254 CCCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATT---AA----AA-GCT--
1 -CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAA
*
9191303 -CTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAA
* ** *
9191360 CCTGACTTAATTAAAAAATCTAACCCTAACCCTAACCTAAATTAATTAAA----AA--C---
1 CCTAACTTAATTAAAAACCCTAACCCTAA-CCTAA-CTTAATTAA--AAACCCTAACCCTAA
* ** * * *
9191413 CCTAACTTAATTAAAAACCTTAACCCTAACCT-AATTTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAA-CCCTAACCTAACTTAATTAAAAACCCTAACCCTAA
9191471 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAA
* * * *
9191529 CCTAATTTAATGAAAAAATCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAAT-TAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAA
9191588 CCTAACTTAATT--AAA----AACCCT-A---AA-TTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAA
* *
9191635 CCTAATTTAATTAAAAATCCTAAC
1 CCTAACTTAATTAAAAACCCTAAC
9191659 TTAATTAAAA
Statistics
Matches: 1099, Mismatches: 102, Indels: 253
0.76 0.07 0.17
Matches are distributed among these distances:
47 210 0.19
48 13 0.01
49 15 0.01
50 10 0.01
51 17 0.02
52 171 0.16
53 88 0.08
54 21 0.02
55 16 0.01
56 33 0.03
57 28 0.03
58 295 0.27
59 94 0.09
60 35 0.03
62 3 0.00
63 4 0.00
64 46 0.04
ACGTcount: A:0.46, C:0.27, G:0.00, T:0.27
Consensus pattern (58 bp):
CCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAA
Found at i:9190439 original size:18 final size:18
Alignment explanation
Indices: 9190416--9190457 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
9190406 CTAACCCTAA
9190416 CCTAACTTAATTAAAAAC
1 CCTAACTTAATTAAAAAC
9190434 CCTAACTTAATTAAAAAC
1 CCTAACTTAATTAAAAAC
9190452 CCTAAC
1 CCTAAC
9190458 CCTAGCCTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.48, C:0.26, G:0.00, T:0.26
Consensus pattern (18 bp):
CCTAACTTAATTAAAAAC
Found at i:9190466 original size:29 final size:29
Alignment explanation
Indices: 9190434--9191610 Score: 767
Period size: 29 Copynumber: 42.8 Consensus size: 29
9190424 AATTAAAAAC
*
9190434 CCTAACTTAATTAAAAACCCTAACCCTAG
1 CCTAACTTAATTAAAAACCCTAACCCTAA
*
9190463 CCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
9190492 CCTAACTTAATTAAAAA-CCT-----TAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
*
9190515 CCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
*
9190544 CCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
9190573 CCTAACTTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
* **
9190602 CCTAATTTAATTAAAAACCCTAACATTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
*
9190631 CTTAACTTAATT--AAA----AACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
*
9190654 CCTAACTTAATTAAAAACCCTAACCCAAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
*
9190683 CCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
**
9190712 CCTAACTTAATTAAAAACCCTAA-TTTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
* *****
9190740 -TTAA---AAACCCTAACCCTAA-CCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
9190764 --T---TTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
*
9190788 CCTAACTTAATTAAAAA-CCTAACCTTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
*
9190816 CCCTAACCTAAATTAACTAAA----AACCCTAA
1 -CCTAA-CTTAATTAA--AAACCCTAACCCTAA
*
9190845 CTTAA-TTAA--AAACCCTAACCCTAA-CCTAA
1 CCTAACTTAATTAAA----AACCCTAACCCTAA
* *
9190874 --T---TTAATTTAAAACTCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
9190898 CCTAACTTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
*
9190927 TCCTAACCTAAATTAATTAAAAACCATAACCCTAA
1 -CCTAA-C----TTAATTAAAAACCCTAACCCTAA
* * *
9190962 ACTAATTTAATTAAAAACCCTAACCTTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
* * * *
9190991 ACTAAATTAATT-AAAACCCTAA-CTTGA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
* * * *
9191018 -TTAA--AAACCCTAACCCTAACCCTAA-CCTAA
1 CCTAACTTAA--TTAA---AAACCCTAACCCTAA
** *
9191048 TTTAA-TTAA-A---AACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
* *
9191072 CCTAACTTAATTAAAAACTCTAA-CTTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
* *****
9191100 -TTAA---AAACCCTAACCCTAA--CT--
1 CCTAACTTAATTAAAAACCCTAACCCTAA
* *
9191121 --TAATTTAATTTAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
*
9191148 CCTAACTTAATTAAAAACCTTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
* *
9191177 CCTAATTTAATTAAAAACCCTAA-CTTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
* * * **
9191205 -TTAA--AAACT-CTAACCCTAA--C---
1 CCTAACTTAATTAAAAACCCTAACCCTAA
*
9191225 CCTAACTTAATTAAAAACTCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
9191254 CCCTAACTTAATTAAAAACCCTAACCCTAA
1 -CCTAACTTAATTAAAAACCCTAACCCTAA
* * *
9191284 CCTAACTTAATTAAAAGCTCTAA-CTTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
* *****
9191312 -TTAA---AAACCCTAACCCTAA-CCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
9191336 --T---TTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
* **
9191360 CCTGACTTAATTAAAAAATCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
*
9191389 CCCTAACCTAAATTAATTAAA----AACCCTAA
1 -CCTAA-CTTAATTAA--AAACCCTAACCCTAA
*
9191418 CTTAA-TTAA--AAACCTTAACCCTAA-CCTAA
1 CCTAACTTAATTAAA----AACCCTAACCCTAA
9191447 --T---TTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
9191471 CCTAACTTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
9191500 CCTAACTTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
* * *
9191529 CCTAATTTAATGAAAAAATCCTAACCCTAA
1 CCTAACTTAAT-TAAAAACCCTAACCCTAA
*
9191559 CCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA
9191588 CCTAACTTAATTAAAAACCCTAA
1 CCTAACTTAATTAAAAACCCTAA
9191611 ATTAATTAAA
Statistics
Matches: 918, Mismatches: 122, Indels: 216
0.73 0.10 0.17
Matches are distributed among these distances:
20 3 0.00
21 3 0.00
22 2 0.00
23 95 0.10
24 86 0.09
25 20 0.02
26 19 0.02
27 27 0.03
28 46 0.05
29 483 0.53
30 87 0.09
31 13 0.01
32 5 0.01
33 3 0.00
34 4 0.00
35 22 0.02
ACGTcount: A:0.46, C:0.27, G:0.00, T:0.27
Consensus pattern (29 bp):
CCTAACTTAATTAAAAACCCTAACCCTAA
Done.