Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60343961
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 596159 characters in sequence are not A, C, G, or T
File 33 of 204
Found at i:9190739 original size:18 final size:18
Alignment explanation
Indices: 9190712--9190753 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
9190702 CTAACCCTAA
9190712 CCTAACTTAATTAAAAAC
1 CCTAACTTAATTAAAAAC
*
9190730 CCTAATTTAATTAAAAAC
1 CCTAACTTAATTAAAAAC
9190748 CCTAAC
1 CCTAAC
9190754 CCTAACCTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.29
Consensus pattern (18 bp):
CCTAACTTAATTAAAAAC
Found at i:9190849 original size:18 final size:17
Alignment explanation
Indices: 9190786--9190863 Score: 68
Period size: 18 Copynumber: 4.5 Consensus size: 17
9190776 CCCTAACCCT
*
9190786 AACCTAACTTAATTAAA
1 AACCTAACTTAACTAAA
***
9190803 AACCTAACCTTAAC-CCT
1 AACCTAA-CTTAACTAAA
*
9190820 AACCTAAATTAACTAAA
1 AACCTAACTTAACTAAA
*
9190837 AACCCTAACTTAATTAAA
1 AA-CCTAACTTAACTAAA
9190855 AACCCTAAC
1 AA-CCTAAC
9190864 CCTAACCTAA
Statistics
Matches: 48, Mismatches: 10, Indels: 5
0.76 0.16 0.08
Matches are distributed among these distances:
16 5 0.10
17 16 0.33
18 27 0.56
ACGTcount: A:0.49, C:0.27, G:0.00, T:0.24
Consensus pattern (17 bp):
AACCTAACTTAACTAAA
Found at i:9191047 original size:35 final size:34
Alignment explanation
Indices: 9191008--9191085 Score: 113
Period size: 35 Copynumber: 2.3 Consensus size: 34
9190998 TAATTAAAAC
*
9191008 CCTAACTTGATTAAAAACCCTAACCCTAACCCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAA-CCTAA
*
9191043 CCTAATTTAATTAAAAACCCTAACCCTAACCTAA
1 CCTAACTTAATTAAAAACCCTAACCCTAACCTAA
*
9191077 CTTAA-TTAA
1 CCTAACTTAA
9191086 AAACTCTAAC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
33 4 0.10
34 9 0.22
35 27 0.68
ACGTcount: A:0.42, C:0.29, G:0.01, T:0.27
Consensus pattern (34 bp):
CCTAACTTAATTAAAAACCCTAACCCTAACCTAA
Found at i:9191096 original size:18 final size:18
Alignment explanation
Indices: 9191072--9191113 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
9191062 CTAACCCTAA
9191072 CCTAACTTAATTAAAAAC
1 CCTAACTTAATTAAAAAC
*
9191090 TCTAACTTAATTAAAAAC
1 CCTAACTTAATTAAAAAC
9191108 CCTAAC
1 CCTAAC
9191114 CCTAACTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.29
Consensus pattern (18 bp):
CCTAACTTAATTAAAAAC
Found at i:9191102 original size:47 final size:47
Alignment explanation
Indices: 9191044--9191523 Score: 366
Period size: 47 Copynumber: 9.1 Consensus size: 47
9191034 TAACCCTAAC
*
9191044 CTAATTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACT
1 CTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACT
* *
9191091 CTAACTTAATTAAAAACCCTAACCCTAACTTAATTTAATTTAAAACCCTAACCCT
1 CTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAA-TT-AAA----AA--CT
* * *
9191146 AACCTAACTTAATTAAAAACCTTAACCCTAACCTAATTTAATTAAAAACC
1 ---CTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACT
*
9191196 CTAACTTAATTAAAAACTCTAACCCTAACCCTAACTTAATTAAAAACTCTAACCCT
1 CTAACTTAATTAAAAACCCTAACCCTAA-CCTAACTTAATT--AAA----AA--CT
*
9191252 AACCCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAGCT
1 ----CTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACT
*
9191303 CTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCT
1 CTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAA--CT
* *
9191352 AACCCTAACCTGACTTAATTAAAAAATCTAACCCTAACCCTAACCTAAATTAATTAAAAACC
1 ----CT-A----ACTTAATT-AA--A---AACCCTAACCCTAACCTAACTTAATTAAAAACT
* *
9191414 CTAACTTAATTAAAAACCTTAACCCTAACCTAATTTAATTAAAAACCCTAACCCT
1 CTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATT--AAA----AA--CT
*
9191469 AACCTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACC
1 ---CTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACT
9191519 CTAAC
1 CTAAC
9191524 CCTAACCTAA
Statistics
Matches: 359, Mismatches: 22, Indels: 104
0.74 0.05 0.21
Matches are distributed among these distances:
47 133 0.37
48 13 0.04
49 8 0.02
50 6 0.02
51 2 0.01
52 6 0.02
53 15 0.04
54 3 0.01
55 3 0.01
56 7 0.02
57 6 0.02
58 84 0.23
59 14 0.04
60 27 0.08
61 1 0.00
62 1 0.00
64 30 0.08
ACGTcount: A:0.45, C:0.27, G:0.00, T:0.28
Consensus pattern (47 bp):
CTAACTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACT
Found at i:9191204 original size:18 final size:18
Alignment explanation
Indices: 9191177--9191218 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
9191167 TTAACCCTAA
*
9191177 CCTAATTTAATTAAAAAC
1 CCTAACTTAATTAAAAAC
9191195 CCTAACTTAATTAAAAAC
1 CCTAACTTAATTAAAAAC
*
9191213 TCTAAC
1 CCTAAC
9191219 CCTAACCCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (18 bp):
CCTAACTTAATTAAAAAC
Found at i:9191273 original size:18 final size:18
Alignment explanation
Indices: 9191252--9191325 Score: 63
Period size: 18 Copynumber: 4.5 Consensus size: 18
9191242 CTCTAACCCT
9191252 AACCCTAACTTAATTAAA
1 AACCCTAACTTAATTAAA
**
9191270 AACCCTAAC---CCT--A
1 AACCCTAACTTAATTAAA
9191283 -ACC-TAACTTAATTAAA
1 AACCCTAACTTAATTAAA
* *
9191299 AGCTCTAACTTAATTAAA
1 AACCCTAACTTAATTAAA
9191317 AACCCTAAC
1 AACCCTAAC
9191326 CCTAACCTAA
Statistics
Matches: 41, Mismatches: 8, Indels: 14
0.65 0.13 0.22
Matches are distributed among these distances:
11 4 0.10
12 3 0.07
13 1 0.02
14 1 0.02
15 1 0.02
16 1 0.02
17 1 0.02
18 29 0.71
ACGTcount: A:0.46, C:0.27, G:0.01, T:0.26
Consensus pattern (18 bp):
AACCCTAACTTAATTAAA
Found at i:9191422 original size:18 final size:18
Alignment explanation
Indices: 9191395--9191436 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
9191385 CTAACCCTAA
*
9191395 CCTAAATTAATTAAAAAC
1 CCTAACTTAATTAAAAAC
9191413 CCTAACTTAATTAAAAAC
1 CCTAACTTAATTAAAAAC
*
9191431 CTTAAC
1 CCTAAC
9191437 CCTAACCTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (18 bp):
CCTAACTTAATTAAAAAC
Found at i:9191615 original size:18 final size:18
Alignment explanation
Indices: 9191588--9191628 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
9191578 CTAACCCTAA
*
9191588 CCTAACTTAATTAAAAAC
1 CCTAAATTAATTAAAAAC
9191606 CCTAAATTAATTAAAAAC
1 CCTAAATTAATTAAAAAC
9191624 CCTAA
1 CCTAA
9191629 CCCTAACCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.51, C:0.22, G:0.00, T:0.27
Consensus pattern (18 bp):
CCTAAATTAATTAAAAAC
Found at i:9191662 original size:18 final size:18
Alignment explanation
Indices: 9191635--9191676 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
9191625 CTAACCCTAA
* *
9191635 CCTAATTTAATTAAAAAT
1 CCTAACTTAATTAAAAAC
9191653 CCTAACTTAATTAAAAAC
1 CCTAACTTAATTAAAAAC
9191671 CCTAAC
1 CCTAAC
9191677 CCTAACCTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (18 bp):
CCTAACTTAATTAAAAAC
Found at i:9191687 original size:47 final size:47
Alignment explanation
Indices: 9191559--9191689 Score: 226
Period size: 47 Copynumber: 2.8 Consensus size: 47
9191549 CTAACCCTAA
* *
9191559 CCTAATTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAAC
1 CCTAAATTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAC
*
9191606 CCTAAATTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAT
1 CCTAAATTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAC
*
9191653 CCTAACTTAATTAAAAACCCTAACCCTAACCTAATTT
1 CCTAAATTAATTAAAAACCCTAACCCTAACCTAATTT
9191690 TACATAATTT
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 80 1.00
ACGTcount: A:0.46, C:0.25, G:0.00, T:0.29
Consensus pattern (47 bp):
CCTAAATTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAC
Found at i:9191761 original size:18 final size:18
Alignment explanation
Indices: 9191738--9191772 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
9191728 TTTGGACTTA
9191738 ATAATTTTACATAATTTG
1 ATAATTTTACATAATTTG
*
9191756 ATAATTTTACCTAATTT
1 ATAATTTTACATAATTT
9191773 AATTAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.09, G:0.03, T:0.51
Consensus pattern (18 bp):
ATAATTTTACATAATTTG
Found at i:9191771 original size:65 final size:61
Alignment explanation
Indices: 9191688--9191873 Score: 179
Period size: 65 Copynumber: 3.0 Consensus size: 61
9191678 CTAACCTAAT
9191688 TTTACATAATTTGATAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTACATAA
1 TTTACATAATTTGATAATTTTACTAA-CATTAA-A-AATTTTTGGACTTAATAATTTTACATAA
* * * * *
9191752 TTT-GATAATTTTACCTAA--TT--T-A-ATTAAAATTTTTTTGTCTTAATAATTTTACATAAA
1 TTTACATAATTTGA--TAATTTTACTAACATTAAAAATTTTTGGACTTAATAATTTTACAT-AA
* *
9191809 TTTACATAATTTGATAATTTTACTAATCATTAAAAAAAATTTGGGACTTAATAATTTTACATAA
1 TTTACATAATTTGATAATTTTACTAA-CATT--AAAAATTTTTGGACTTAATAATTTTACATAA
9191873 T
1 T
9191874 GTTAGATTTG
Statistics
Matches: 97, Mismatches: 12, Indels: 26
0.72 0.09 0.19
Matches are distributed among these distances:
56 26 0.27
57 6 0.06
58 15 0.15
60 2 0.02
61 2 0.02
63 13 0.13
64 6 0.06
65 27 0.28
ACGTcount: A:0.40, C:0.09, G:0.05, T:0.46
Consensus pattern (61 bp):
TTTACATAATTTGATAATTTTACTAACATTAAAAATTTTTGGACTTAATAATTTTACATAA
Found at i:9191783 original size:55 final size:55
Alignment explanation
Indices: 9191684--9191807 Score: 162
Period size: 55 Copynumber: 2.2 Consensus size: 55
9191674 AACCCTAACC
*
9191684 TAATTTTACATAATTTGATAATTTTACTAACCATTAACACAA-TTTTTGGACTTAA
1 TAATTTTACATAATTTGATAATTTTACTAA-CATTAACAAAATTTTTTGGACTTAA
* * * *
9191739 TAATTTTACATAATTTGATAATTTTACCTAA-TTTAATTAAAATTTTTTTGTCTTAA
1 TAATTTTACATAATTTGATAATTTTA-CTAACATTAA-CAAAATTTTTTGGACTTAA
9191795 TAATTTTACATAA
1 TAATTTTACATAA
9191808 ATTTACATAA
Statistics
Matches: 61, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
54 4 0.07
55 29 0.48
56 28 0.46
ACGTcount: A:0.38, C:0.10, G:0.04, T:0.48
Consensus pattern (55 bp):
TAATTTTACATAATTTGATAATTTTACTAACATTAACAAAATTTTTTGGACTTAA
Found at i:9195187 original size:124 final size:124
Alignment explanation
Indices: 9194967--9195316 Score: 630
Period size: 124 Copynumber: 2.8 Consensus size: 124
9194957 CCCAAACTTG
9194967 CTACTGTAGCAAAATCGCGTCCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGG
*
9195032 TAGAGGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAATATTATTTCTTACATGAC
66 TAGAGGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTACATGAC
9195091 CTACTGTAGCAAAATCGCGTCCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGG
9195156 TAGAGGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTACATGAC
66 TAGAGGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTACATGAC
* *
9195215 CTACTGTAGCAAAATCGCGTCTACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGG
* * *
9195280 TAGAAGTGATTTTATACTATTTGAC-CAAAAACGTCAA
66 TAGAGGCGATTTTATACTATTTG-CTCAGAAACGTCAA
9195317 CTCGAAATAA
Statistics
Matches: 219, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
124 218 1.00
125 1 0.00
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.30
Consensus pattern (124 bp):
CTACTGTAGCAAAATCGCGTCCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGG
TAGAGGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTACATGAC
Found at i:9195645 original size:29 final size:29
Alignment explanation
Indices: 9195613--9195675 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 29
9195603 CCCATTCCGG
*
9195613 TAAATAATCAAAAAATTGGCCTATTTTGA
1 TAAATAATCAAAAAAATGGCCTATTTTGA
** * * *
9195642 TAAATTTTGAAAAAAATGGCCTTTTTTGG
1 TAAATAATCAAAAAAATGGCCTATTTTGA
9195671 TAAAT
1 TAAAT
9195676 TGCCCGTTTT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.41, C:0.08, G:0.13, T:0.38
Consensus pattern (29 bp):
TAAATAATCAAAAAAATGGCCTATTTTGA
Found at i:9199140 original size:31 final size:30
Alignment explanation
Indices: 9199078--9199143 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 30
9199068 TTTAGTCATA
9199078 TAATAAATTATTAATATAAATTATTATTTT
1 TAATAAATTATTAATATAAATTATTATTTT
9199108 TAATAAATTATTTAATATTTAAATT-TTA-TTT
1 TAATAAATTA-TTAATA--TAAATTATTATTTT
9199139 TAATA
1 TAATA
9199144 GTAAATTTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
30 10 0.30
31 14 0.42
32 3 0.09
33 6 0.18
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (30 bp):
TAATAAATTATTAATATAAATTATTATTTT
Found at i:9200167 original size:18 final size:17
Alignment explanation
Indices: 9200143--9200186 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
9200133 ACAATTAGTA
9200143 AAATAAAAATAA-ATAAT
1 AAATAAAAATAATA-AAT
9200160 ATAATAAATAATAATAAAT
1 A-AATAAA-AATAATAAAT
9200179 AAATAAAA
1 AAATAAAA
9200187 TAGAATGGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
17 2 0.08
18 12 0.50
19 9 0.38
20 1 0.04
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (17 bp):
AAATAAAAATAATAAAT
Found at i:9200178 original size:26 final size:26
Alignment explanation
Indices: 9200112--9200184 Score: 84
Period size: 22 Copynumber: 3.0 Consensus size: 26
9200102 AAGTATAAGA
*
9200112 ATAATAAATAA-AATAAAATAAACAAT
1 ATAATAAATAATAAT-AAATAAATAAT
*
9200138 -TAGT-AA-AATAA-AAATAAATAAT
1 ATAATAAATAATAATAAATAAATAAT
9200160 ATAATAAATAATAATAAATAAATAA
1 ATAATAAATAATAATAAATAAATAA
9200185 AATAGAATGG
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
22 10 0.26
23 5 0.13
24 6 0.15
25 8 0.21
26 10 0.26
ACGTcount: A:0.71, C:0.01, G:0.01, T:0.26
Consensus pattern (26 bp):
ATAATAAATAATAATAAATAAATAAT
Found at i:9203977 original size:51 final size:50
Alignment explanation
Indices: 9203911--9204054 Score: 175
Period size: 51 Copynumber: 2.8 Consensus size: 50
9203901 ACTATTATCA
* *
9203911 TTCGATACACGTAGTAGCCTTCATATAGTACTACACACGTGACTA-AAGCTT
1 TTCGATACACGTAGTAGCCTTCATATAGTACTACACATGTGACCATAA--TT
* * *
9203962 TTCGGTACACATAGTAGCCTTCACT-TAGTACTACACATGTGACCATTATT
1 TTCGATACACGTAGTAGCCTTCA-TATAGTACTACACATGTGACCATAATT
* *
9204012 TATCGATACACGTAGTAGCCTTCACATAATACTACACATGTGA
1 T-TCGATACACGTAGTAGCCTTCATATAGTACTACACATGTGA
9204055 TCATCGATAC
Statistics
Matches: 80, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
50 3 0.04
51 75 0.94
52 2 0.03
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.31
Consensus pattern (50 bp):
TTCGATACACGTAGTAGCCTTCATATAGTACTACACATGTGACCATAATT
Found at i:9211502 original size:50 final size:49
Alignment explanation
Indices: 9211442--9211633 Score: 208
Period size: 51 Copynumber: 3.8 Consensus size: 49
9211432 TATCATTCGA
*
9211442 TACACGTAGTAGCCTTTACATAGTACTACACACGTGATCAAGTTTTACAG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTAC-G
* *
9211492 TCCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTT-CGG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAG-TTTTAC-G
* * * * * *
9211543 TATACATAGTAGCCTTCACTTAGTACTACACATGTGAAC-ATTATTTATCG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGT-TTTA-CG
* *
9211593 ATACACGTAGTACCCTTCACATAGTACTACACACATGATCA
1 -TACACGTAGTAGCCTTCACATAGTACTACACACGTGATCA
9211634 TCGATACTTT
Statistics
Matches: 117, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
48 1 0.01
49 4 0.03
50 37 0.32
51 71 0.61
52 4 0.03
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (49 bp):
TACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACG
Found at i:9219235 original size:51 final size:50
Alignment explanation
Indices: 9219176--9219366 Score: 188
Period size: 51 Copynumber: 3.8 Consensus size: 50
9219166 ATGTTTGGTT
** *
9219176 CACATAGTAGCCTGTACATAGTACTACACATGTGACCATTACCATCCGATA
1 CACATAGTAGCCTACACATAGTACTACACACGTGACCA-TACCATCCGATA
* * * *
9219227 CACATAGTACCCTACACATAGTACTACACACGTGATCGAAACTATCC-AGTA
1 CACATAGTAGCCTACACATAGTACTACACACGTGA-CCATACCATCCGA-TA
** * * * * * *
9219278 TGCATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTTCGGTA
1 CACATAGTAGCCTACACATAGTACTACACACGTGACCATACCA-TCCGATA
*
9219328 CACGTAGTAGCCTACACATAGTACTACACACGTGACCAT
1 CACATAGTAGCCTACACATAGTACTACACACGTGACCAT
9219367 CACTTTCACT
Statistics
Matches: 110, Mismatches: 25, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
49 2 0.02
50 37 0.34
51 69 0.63
52 2 0.02
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (50 bp):
CACATAGTAGCCTACACATAGTACTACACACGTGACCATACCATCCGATA
Found at i:9219356 original size:101 final size:101
Alignment explanation
Indices: 9219178--9219362 Score: 282
Period size: 101 Copynumber: 1.8 Consensus size: 101
9219168 GTTTGGTTCA
* *
9219178 CATAGTAGCCTGTACATAGTACTACACATGTGACCATTACCATCCGATACACATAGTACCCTACA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCA-TACCATCCGATACACATAGTACCCTACA
9219243 CATAGTACTACACACGTGATCGAAACTATCCAGTATG
65 CATAGTACTACACACGTGATCGAAACTATCCAGTATG
* * * * *
9219280 CATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTTCGGTACACGTAGTAGCCTACA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATACCA-TCCGATACACATAGTACCCTACA
9219344 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
9219363 CCATCACTTT
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
100 4 0.05
101 38 0.51
102 33 0.44
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATACCATCCGATACACATAGTACCCTACAC
ATAGTACTACACACGTGATCGAAACTATCCAGTATG
Found at i:9224845 original size:27 final size:27
Alignment explanation
Indices: 9224815--9224892 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
9224805 ACTTAACTTT
9224815 TAAACCATAAACCTAAACTCAAAACAC
1 TAAACCATAAACCTAAACTCAAAACAC
* * * *
9224842 TAAACCTTAAGCATTAAAGTC-AAACAC
1 TAAACCATAAAC-CTAAACTCAAAACAC
*
9224869 TAAACCCTAAATCCTAAAC-CAAAA
1 TAAACCATAAA-CCTAAACTCAAAA
9224893 TGTCAAATTC
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
26 1 0.03
27 32 0.80
28 7 0.17
ACGTcount: A:0.53, C:0.27, G:0.03, T:0.18
Consensus pattern (27 bp):
TAAACCATAAACCTAAACTCAAAACAC
Found at i:9224923 original size:14 final size:14
Alignment explanation
Indices: 9224900--9224929 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
9224890 AAATGTCAAA
*
9224900 TTCAAGGTTTTGGG
1 TTCAAAGTTTTGGG
9224914 TTCAAAGTTTTGGG
1 TTCAAAGTTTTGGG
9224928 TT
1 TT
9224930 TTGGGTTTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.07, G:0.30, T:0.47
Consensus pattern (14 bp):
TTCAAAGTTTTGGG
Found at i:9224989 original size:26 final size:26
Alignment explanation
Indices: 9224960--9225014 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
9224950 CGAGGTTTGA
*
9224960 GTTTGGGTTCGAATTCAC-AGTTCAAG
1 GTTTGAGTTCGAATTCACGA-TTCAAG
* *
9224986 GTTTGAGTTTGAGTTCACGATTCAAG
1 GTTTGAGTTCGAATTCACGATTCAAG
9225012 GTT
1 GTT
9225015 CAATGTTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.22, C:0.13, G:0.27, T:0.38
Consensus pattern (26 bp):
GTTTGAGTTCGAATTCACGATTCAAG
Found at i:9225504 original size:19 final size:19
Alignment explanation
Indices: 9225480--9225552 Score: 137
Period size: 19 Copynumber: 3.8 Consensus size: 19
9225470 AATCTTCAAG
9225480 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
9225499 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
9225518 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
9225537 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
9225553 AGATATGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 52 1.00
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:9225585 original size:22 final size:22
Alignment explanation
Indices: 9225544--9225589 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
9225534 TATGATATGC
*
9225544 AATCTTAGAAGATATGATTTTGT
1 AATCTTAGAAGATAT-AATTTGT
*
9225567 AATCTTAG-AGATTTAATTTGT
1 AATCTTAGAAGATATAATTTGT
9225588 AA
1 AA
9225590 ATGCCTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 8 0.38
22 5 0.24
23 8 0.38
ACGTcount: A:0.37, C:0.04, G:0.15, T:0.43
Consensus pattern (22 bp):
AATCTTAGAAGATATAATTTGT
Found at i:9225588 original size:21 final size:23
Alignment explanation
Indices: 9225512--9225589 Score: 62
Period size: 19 Copynumber: 3.7 Consensus size: 23
9225502 ATGCAATCTT
*
9225512 AGATATG-ATATGTAATCTT---
1 AGATATGAATTTGTAATCTTAGA
* *
9225531 AGATATG-ATATGCAATCTTAGA
1 AGATATGAATTTGTAATCTTAGA
*
9225553 AGATATGATTTTGTAATCTTAG-
1 AGATATGAATTTGTAATCTTAGA
*
9225575 AGAT-TTAATTTGTAA
1 AGATATGAATTTGTAA
9225590 ATGCCTTTTA
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
19 18 0.37
21 9 0.18
22 11 0.22
23 11 0.22
ACGTcount: A:0.37, C:0.05, G:0.17, T:0.41
Consensus pattern (23 bp):
AGATATGAATTTGTAATCTTAGA
Found at i:9235356 original size:17 final size:18
Alignment explanation
Indices: 9235334--9235367 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
9235324 CTCAACAACC
9235334 AAAGGTATTGTC-CCTGG
1 AAAGGTATTGTCTCCTGG
*
9235351 AAAGGTTTTGTCTCCTG
1 AAAGGTATTGTCTCCTG
9235368 TGCTCTGTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (18 bp):
AAAGGTATTGTCTCCTGG
Found at i:9245847 original size:27 final size:25
Alignment explanation
Indices: 9245809--9245978 Score: 115
Period size: 27 Copynumber: 6.4 Consensus size: 25
9245799 TGCAAGTTGA
*
9245809 GTTCGCCAGTTGGTTTGGCGAGCTGGT
1 GTTCGCCAGTTGG-TT-GCGAACTGGT
* * *
9245836 GTTCGCCAGTTGAGTTGTGAATTAGGG
1 GTTCGCCAGTTG-GTTGCGAACT-GGT
* * *
9245863 GTTCACTAGTTAAGTTGCGAACTGGT
1 GTTCGCCAGTT-GGTTGCGAACTGGT
* * *
9245889 GTTCGCCATTTGGTTTGGCGAGCTAGT
1 GTTCGCCAGTTGG-TT-GCGAACTGGT
** *
9245916 GTTCGCCAGTTGAGTTATGAACTGAT
1 GTTCGCCAGTTG-GTTGCGAACTGGT
* *
9245942 GGTTCGCTAGTTGAGTTGCAAACTGGT
1 -GTTCGCCAGTTG-GTTGCGAACTGGT
9245969 GTTCGCCAGT
1 GTTCGCCAGT
9245979 CAAAAAGTCA
Statistics
Matches: 108, Mismatches: 28, Indels: 15
0.72 0.19 0.10
Matches are distributed among these distances:
25 1 0.01
26 30 0.28
27 75 0.69
28 2 0.02
ACGTcount: A:0.16, C:0.16, G:0.33, T:0.34
Consensus pattern (25 bp):
GTTCGCCAGTTGGTTGCGAACTGGT
Found at i:9245946 original size:80 final size:80
Alignment explanation
Indices: 9245809--9245978 Score: 252
Period size: 80 Copynumber: 2.1 Consensus size: 80
9245799 TGCAAGTTGA
* * *
9245809 GTTCGCCAGTTGGTTTGGCGAGCTGGTGTTCGCCAGTTGAGTTGTGAATTAGGGGTTCACTAGTT
1 GTTCGCCAGTTGGTTTGGCGAGCTAGTGTTCGCCAGTTGAGTTATGAATGAGGGGTTCACTAGTT
*
9245874 AAGTTGCGAACTGGT
66 AAGTTGCAAACTGGT
* * *
9245889 GTTCGCCATTTGGTTTGGCGAGCTAGTGTTCGCCAGTTGAGTTATGAACTGA-TGGTTCGCTAGT
1 GTTCGCCAGTTGGTTTGGCGAGCTAGTGTTCGCCAGTTGAGTTATGAA-TGAGGGGTTCACTAGT
*
9245953 TGAGTTGCAAACTGGT
65 TAAGTTGCAAACTGGT
9245969 GTTCGCCAGT
1 GTTCGCCAGT
9245979 CAAAAAGTCA
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 78 0.98
81 2 0.03
ACGTcount: A:0.16, C:0.16, G:0.33, T:0.34
Consensus pattern (80 bp):
GTTCGCCAGTTGGTTTGGCGAGCTAGTGTTCGCCAGTTGAGTTATGAATGAGGGGTTCACTAGTT
AAGTTGCAAACTGGT
Found at i:9263121 original size:217 final size:217
Alignment explanation
Indices: 9262746--9263255 Score: 826
Period size: 217 Copynumber: 2.4 Consensus size: 217
9262736 CAAACCCACC
* *
9262746 CTTAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTAGATGCGATCT-ACTCTCTGTAACTTC
1 CTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGA-TCTCTGCAACTTC
** * *
9262810 AGAGAGATAAGATCCAAGGTTTTAATCTGCTCCACTGCAACCTTAGGGAGATAGGATTATCAGTT
65 AGAGAGATAAGATCCAAGGTTTTAATCCACTCCACTACAACCTTAGGGAGATAGGATTATCAGCT
9262875 TTAATCTGCCCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAAC
130 TTAATCTGCCCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAAC
*
9262940 TTTAGGAGGATAAGACTTGCGTA
195 TTCAGGAGGATAAGACTTGCGTA
* *
9262963 CTTAGTCTACTCCACTGCAACTTCAGAGAGATAAGACTAGATGCGATCTGATCTCTGCAACTTCA
1 CTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGATCTCTGCAACTTCA
* *
9263028 GGGAGATAAGATCCAAGGTTTTAATCCACTCCACTACAA-CTTCAGGGAGATAGGATTATCGGCT
66 GAGAGATAAGATCCAAGGTTTTAATCCACTCCACTACAACCTT-AGGGAGATAGGATTATCAGCT
* *
9263092 TTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTTTGCCTCACTGCAAC
130 TTAATCTGCCCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAAC
*
9263157 TTCAGGAGGATAAGACTTGCTTA
195 TTCAGGAGGATAAGACTTGCGTA
* * *
9263180 CTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATTTGCTCTCTACAACTTCA
1 CTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGATCTCTGCAACTTCA
*
9263245 AAGAGATAAGA
66 GAGAGATAAGA
9263256 CTTGTGCTTT
Statistics
Matches: 270, Mismatches: 21, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
216 3 0.01
217 266 0.99
218 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (217 bp):
CTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGATCTCTGCAACTTCA
GAGAGATAAGATCCAAGGTTTTAATCCACTCCACTACAACCTTAGGGAGATAGGATTATCAGCTT
TAATCTGCCCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACT
TCAGGAGGATAAGACTTGCGTA
Found at i:9263216 original size:44 final size:43
Alignment explanation
Indices: 9262746--9263217 Score: 240
Period size: 44 Copynumber: 10.9 Consensus size: 43
9262736 CAAACCCACC
* * * *
9262746 CTTAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTAGATG
1 CTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTA
* * * * * ** *
9262789 C-GA-TCTACT-CTCTGTAACTTCAGAGAGATAAGATCCAAGGT-
1 CTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGA--CTTGCTA
* * * *
9262830 TTTAATCTGCTCCACTGCAACCTT-AGGGAGATAGGA-TT-ATCA
1 CTTAGTCTGCTCCACTGCAA-CTTCAGGGAGATAAGACTTGCT-A
* * * * *
9262872 GTTTTAATCTGCCCCACTGCAACTTCAGGGAGATAAGATTTGCCA
1 --CTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTA
*
9262917 TCTTCAGTCTGC-CTCACTGCAACTTTA-GGAGGATAAGACTTGCGTA
1 -CTT-AGTCTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTGC-TA
* * * * *
9262963 CTTAGTCTACTCCACTGCAACTTCAGAGAGATAAGACTAGATG
1 CTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTA
* * * ** *
9263006 C-GA-TCTGAT-CTCTGCAACTTCAGGGAGATAAGATCCAAGGT-
1 CTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGA--CTTGCTA
* * ** * * *
9263047 TTTAATCCACTCCACTACAACTTCAGGGAGATAGGATTATCGGCT-
1 CTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACT-T--GCTA
* * *
9263092 -TTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCA
1 CTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTA
*
9263134 TCTTCAGTTTGC-CTCACTGCAACTTCA-GGAGGATAAGACTTGCTTA
1 -CTT-AGTCTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTGC-TA
9263180 CTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACT
1 CTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACT
9263218 AGATGCGATT
Statistics
Matches: 331, Mismatches: 62, Indels: 71
0.71 0.13 0.15
Matches are distributed among these distances:
40 43 0.13
41 11 0.03
42 12 0.04
43 15 0.05
44 169 0.51
45 79 0.24
46 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (43 bp):
CTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTA
Found at i:9271456 original size:24 final size:24
Alignment explanation
Indices: 9271428--9271473 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
9271418 ATCATTTTTT
* *
9271428 GCTGCTCATTCATTTGCTTTTGAA
1 GCTGCTCATGCATTTCCTTTTGAA
*
9271452 GCTGCTCCTGCATTTCCTTTTG
1 GCTGCTCATGCATTTCCTTTTG
9271474 GGACTGTTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.11, C:0.26, G:0.17, T:0.46
Consensus pattern (24 bp):
GCTGCTCATGCATTTCCTTTTGAA
Found at i:9280019 original size:23 final size:22
Alignment explanation
Indices: 9279975--9280099 Score: 112
Period size: 23 Copynumber: 5.6 Consensus size: 22
9279965 ATTTCATGAT
* *
9279975 TCGCCATAAAGG-TAATACAGAA
1 TCGCCACAAAGGCTAA-ATAGAA
*
9279997 TACACCACAAAGGCTAAATAGAA
1 T-CGCCACAAAGGCTAAATAGAA
* *
9280020 T-GCCACAAAGGCAAAACAGAA
1 TCGCCACAAAGGCTAAATAGAA
*
9280041 TCTGCCACAAAGGCTTAATAGAA
1 TC-GCCACAAAGGCTAAATAGAA
* *
9280064 TGCGCCACAAAGGCCAAGTAGAA
1 T-CGCCACAAAGGCTAAATAGAA
*
9280087 -CGCCACCAAGGCT
1 TCGCCACAAAGGCT
9280100 TAGTGTTGAT
Statistics
Matches: 84, Mismatches: 14, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
21 29 0.35
22 1 0.01
23 50 0.60
24 4 0.05
ACGTcount: A:0.43, C:0.25, G:0.19, T:0.13
Consensus pattern (22 bp):
TCGCCACAAAGGCTAAATAGAA
Found at i:9280039 original size:44 final size:45
Alignment explanation
Indices: 9279975--9280077 Score: 129
Period size: 44 Copynumber: 2.3 Consensus size: 45
9279965 ATTTCATGAT
* * *
9279975 TCGCCATAAAGGTAATACAGAATAC-ACCACAAAGGCTAAATAGAA
1 TCGCCACAAAGGCAAAACAGAAT-CTACCACAAAGGCTAAATAGAA
* *
9280020 T-GCCACAAAGGCAAAACAGAATCTGCCACAAAGGCTTAATAGAA
1 TCGCCACAAAGGCAAAACAGAATCTACCACAAAGGCTAAATAGAA
9280064 TGCGCCACAAAGGC
1 T-CGCCACAAAGGC
9280078 CAAGTAGAAC
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
43 1 0.02
44 37 0.74
45 1 0.02
46 11 0.22
ACGTcount: A:0.45, C:0.23, G:0.18, T:0.14
Consensus pattern (45 bp):
TCGCCACAAAGGCAAAACAGAATCTACCACAAAGGCTAAATAGAA
Found at i:9280981 original size:24 final size:24
Alignment explanation
Indices: 9280954--9281001 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
9280944 AAGAGAACAT
9280954 TTAATTTTAAAAAGAAGAACTAGA
1 TTAATTTTAAAAAGAAGAACTAGA
9280978 TTAATTTTAAAAAGAAGAACTAGA
1 TTAATTTTAAAAAGAAGAACTAGA
9281002 AAGTAGTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.04, G:0.12, T:0.29
Consensus pattern (24 bp):
TTAATTTTAAAAAGAAGAACTAGA
Found at i:9293501 original size:29 final size:29
Alignment explanation
Indices: 9293445--9293501 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
9293435 ATCAGTTAAG
* *
9293445 TAAGGCTAGGATTTTATCAAAGATAGATC
1 TAAGGCTAGGATATTATCAAAGAAAGATC
*
9293474 TAAGGTCTA-GATATTATCAAATAAAGAT
1 TAAGG-CTAGGATATTATCAAAGAAAGAT
9293502 TAAAGGTGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 21 0.88
30 3 0.12
ACGTcount: A:0.42, C:0.09, G:0.18, T:0.32
Consensus pattern (29 bp):
TAAGGCTAGGATATTATCAAAGAAAGATC
Found at i:9294995 original size:46 final size:46
Alignment explanation
Indices: 9294891--9294996 Score: 131
Period size: 46 Copynumber: 2.3 Consensus size: 46
9294881 GAAATGGGAT
* *
9294891 AAGCTCGAAACCTATTCTTGTATTCTCGAGTCCGCAACATATGCAA
1 AAGCTCGAAACCTATTCTTATATTCTCGAGTCAGCAACATATGCAA
* * * * * *
9294937 GATCTTGGAACCTATTCTTATTTTCTTGAGTCAGCAACATATGCAA
1 AAGCTCGAAACCTATTCTTATATTCTCGAGTCAGCAACATATGCAA
*
9294983 AAGCTCAAAACCTA
1 AAGCTCGAAACCTA
9294997 GGCAAAAGTC
Statistics
Matches: 47, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (46 bp):
AAGCTCGAAACCTATTCTTATATTCTCGAGTCAGCAACATATGCAA
Found at i:9295356 original size:15 final size:15
Alignment explanation
Indices: 9295336--9295366 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
9295326 ACTAACCTTC
9295336 AAATTCATGCTTATA
1 AAATTCATGCTTATA
9295351 AAATTCATGCTTATA
1 AAATTCATGCTTATA
9295366 A
1 A
9295367 TCTTTTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.13, G:0.06, T:0.39
Consensus pattern (15 bp):
AAATTCATGCTTATA
Found at i:9297124 original size:3 final size:3
Alignment explanation
Indices: 9297116--9297143 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
9297106 TCTACATGAC
9297116 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
9297144 ACATTTACCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:9305742 original size:31 final size:31
Alignment explanation
Indices: 9305706--9305775 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 31
9305696 TTCAAAATGG
*
9305706 TCAAATAAGAGCCA-AATCTTCTTGAAAGTGC
1 TCAAATAAGAGACACAA-CTTCTTGAAAGTGC
* * *
9305737 TCAAATAA-AGACACGACTTTTTGAAATTGC
1 TCAAATAAGAGACACAACTTCTTGAAAGTGC
9305767 TCAAATAAG
1 TCAAATAAG
9305776 GGCTTCTCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
30 24 0.73
31 9 0.27
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.27
Consensus pattern (31 bp):
TCAAATAAGAGACACAACTTCTTGAAAGTGC
Found at i:9313926 original size:26 final size:26
Alignment explanation
Indices: 9313888--9313962 Score: 62
Period size: 26 Copynumber: 2.9 Consensus size: 26
9313878 GAGCCAAACC
**
9313888 AACAACCGTAGCTCACCAGGCCCACT
1 AACAACCCCAGCTCACCAGGCCCACT
** *
9313914 GGCAACCCCAGCT-ATCCAAGCCCACT
1 AACAACCCCAGCTCA-CCAGGCCCACT
** *
9313940 AATGACCCCAACTCACCAGGCCC
1 AACAACCCCAGCTCACCAGGCCC
9313963 CAAACTCCTA
Statistics
Matches: 36, Mismatches: 11, Indels: 4
0.71 0.22 0.08
Matches are distributed among these distances:
25 1 0.03
26 34 0.94
27 1 0.03
ACGTcount: A:0.29, C:0.45, G:0.15, T:0.11
Consensus pattern (26 bp):
AACAACCCCAGCTCACCAGGCCCACT
Found at i:9325815 original size:17 final size:16
Alignment explanation
Indices: 9325774--9325822 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
9325764 GAATATTTTT
9325774 ATAGATTATTAATTTG
1 ATAGATTATTAATTTG
* *
9325790 AGAAAATTAGTTAATTTG
1 A-TAGATTA-TTAATTTG
9325808 ATAGATTAATTAATT
1 ATAGATT-ATTAATT
9325823 AAGGGATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
16 1 0.04
17 15 0.58
18 10 0.38
ACGTcount: A:0.43, C:0.00, G:0.12, T:0.45
Consensus pattern (16 bp):
ATAGATTATTAATTTG
Found at i:9328131 original size:104 final size:103
Alignment explanation
Indices: 9327972--9328565 Score: 713
Period size: 104 Copynumber: 5.7 Consensus size: 103
9327962 CAGCTAACGA
* *
9327972 TTATTTGAGTTAGTTGATTTAATATCGCAACTCCAAACAGCTCGCTGACCTACGTTCACAGCTGA
1 TTATTTGAGTTAGTTGATTTAAGATCGCAACT-CTAACAGCTCGCTGACCTACGTTCACAGCTGA
9328037 TATTATTAAGGTTAGCTAATTTAAGATCGCAACCTAAGT
65 TATTATTAAGGTTAGCTAATTTAAGATCGCAACCTAAGT
* * ** * *
9328076 TTATTTTAGTTAGTTGATTTAAGATCGCAACTCTGAACAGATTACTAACCTACGTTCACAGCCGA
1 TTATTTGAGTTAGTTGATTTAAGATCGCAACTCT-AACAGCTCGCTGACCTACGTTCACAGCTGA
*
9328141 TATTATTAAGGTTAGCTGATTTAAGATCGCAACCTAAGT
65 TATTATTAAGGTTAGCTAATTTAAGATCGCAACCTAAGT
* * * * * * *
9328180 TTATTTGAGTTAGTTGATTTAATATCGTAACTCCGAACAGCTCACTAACCTTCGTTCACAGTTGA
1 TTATTTGAGTTAGTTGATTTAAGATCGCAACT-CTAACAGCTCGCTGACCTACGTTCACAGCTGA
* **
9328245 TATTATTAAGGTTAGCTTATTTAAGATTTCAACCTAAGT
65 TATTATTAAGGTTAGCTAATTTAAGATCGCAACCTAAGT
* * * * * *
9328284 TTTTTTGAGTTAGCTAATTTAATATCGCAAATCCTAACAGCTCGTTGACCTACGTTCACAGCTGA
1 TTATTTGAGTTAGTTGATTTAAGATCGCAACT-CTAACAGCTCGCTGACCTACGTTCACAGCTGA
9328349 TATTATTAAGGTTAGCTAATTTAAGATCAG-AACCTAAGT
65 TATTATTAAGGTTAGCTAATTTAAGATC-GCAACCTAAGT
* ** * * **
9328388 TTATTTGAGTTTGTTGATTTAAGATTTCAACTCCTAACAACTCGCTGACCTATGTTCACAATTGA
1 TTATTTGAGTTAGTTGATTTAAGATCGCAACT-CTAACAGCTCGCTGACCTACGTTCACAGCTGA
* * * *
9328453 TATTATTCAGTTTAGCTGATTTAATATCGCAACCTAAGT
65 TATTATTAAGGTTAGCTAATTTAAGATCGCAACCTAAGT
* * * * * * * *
9328492 TTATTTGAGTTCGCTAATTTAAGATCACAACTCCTAACAGTTCGTTGATCTACGATCACAGCTGA
1 TTATTTGAGTTAGTTGATTTAAGATCGCAACT-CTAACAGCTCGCTGACCTACGTTCACAGCTGA
*
9328557 TATTTTTAA
65 TATTATTAA
9328566 AGTTTCCTCG
Statistics
Matches: 419, Mismatches: 67, Indels: 8
0.85 0.14 0.02
Matches are distributed among these distances:
103 2 0.00
104 416 0.99
105 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (103 bp):
TTATTTGAGTTAGTTGATTTAAGATCGCAACTCTAACAGCTCGCTGACCTACGTTCACAGCTGAT
ATTATTAAGGTTAGCTAATTTAAGATCGCAACCTAAGT
Found at i:9328539 original size:208 final size:208
Alignment explanation
Indices: 9327972--9328565 Score: 786
Period size: 208 Copynumber: 2.9 Consensus size: 208
9327962 CAGCTAACGA
* * *
9327972 TTATTTGAGTTAGTTGATTTAATATCGCAACTCCAAACAGCTCGCTGACCTACGTTCACAGCTGA
1 TTATTTGAGTTAGTTGATTTAATATCTCAACTCCAAACAGCTCGCTGACCTATGTTCACAGTTGA
* * *
9328037 TATTATTAAGGTTAGCTAATTTAAGATCGCAACCTAAGTTTATTTTAGTTAGTTGATTTAAGATC
66 TATTATTAAGGTTAGCTAATTTAAGATCGCAACCTAAGTTTATTTGAGTTAGCTAATTTAAGATC
* * *
9328102 GCAACT-CTGAACAGATTAC--TAACCTACGTTCACAGCCGATATTATTAAGGTTAGCTGATTTA
131 GCAACTCCT-AACAG-TT-CGTTGACCTACGTTCACAGCTGATATTATTAAGGTTAGCTAATTTA
9328164 AGATCGCAACCTAAGT
193 AGATCGCAACCTAAGT
* * *
9328180 TTATTTGAGTTAGTTGATTTAATATCGT-AACTCCGAACAGCTCACTAACCT-TCGTTCACAGTT
1 TTATTTGAGTTAGTTGATTTAATATC-TCAACTCCAAACAGCTCGCTGACCTAT-GTTCACAGTT
* ** * *
9328243 GATATTATTAAGGTTAGCTTATTTAAGATTTCAACCTAAGTTTTTTTGAGTTAGCTAATTTAATA
64 GATATTATTAAGGTTAGCTAATTTAAGATCGCAACCTAAGTTTATTTGAGTTAGCTAATTTAAGA
* *
9328308 TCGCAAATCCTAACAGCTCGTTGACCTACGTTCACAGCTGATATTATTAAGGTTAGCTAATTTAA
129 TCGCAACTCCTAACAGTTCGTTGACCTACGTTCACAGCTGATATTATTAAGGTTAGCTAATTTAA
9328373 GATCAG-AACCTAAGT
194 GATC-GCAACCTAAGT
* * * * * *
9328388 TTATTTGAGTTTGTTGATTTAAGATTTCAACTCCTAACAACTCGCTGACCTATGTTCACAATTGA
1 TTATTTGAGTTAGTTGATTTAATATCTCAACTCCAAACAGCTCGCTGACCTATGTTCACAGTTGA
* * * * *
9328453 TATTATTCAGTTTAGCTGATTTAATATCGCAACCTAAGTTTATTTGAGTTCGCTAATTTAAGATC
66 TATTATTAAGGTTAGCTAATTTAAGATCGCAACCTAAGTTTATTTGAGTTAGCTAATTTAAGATC
* * * *
9328518 ACAACTCCTAACAGTTCGTTGATCTACGATCACAGCTGATATTTTTAA
131 GCAACTCCTAACAGTTCGTTGACCTACGTTCACAGCTGATATTATTAA
9328566 AGTTTCCTCG
Statistics
Matches: 336, Mismatches: 42, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
206 1 0.00
207 2 0.01
208 329 0.98
209 4 0.01
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (208 bp):
TTATTTGAGTTAGTTGATTTAATATCTCAACTCCAAACAGCTCGCTGACCTATGTTCACAGTTGA
TATTATTAAGGTTAGCTAATTTAAGATCGCAACCTAAGTTTATTTGAGTTAGCTAATTTAAGATC
GCAACTCCTAACAGTTCGTTGACCTACGTTCACAGCTGATATTATTAAGGTTAGCTAATTTAAGA
TCGCAACCTAAGT
Found at i:9328560 original size:312 final size:312
Alignment explanation
Indices: 9327975--9328565 Score: 819
Period size: 312 Copynumber: 1.9 Consensus size: 312
9327965 CTAACGATTA
* * *
9327975 TTTGAGTTAGTTGATTTAATATCGCAACTCCAAACAGCTCGCTGACCTACGTTCACAGCTGATAT
1 TTTGAGTTAGCTAATTTAATATCGCAAATCCAAACAGCTCGCTGACCTACGTTCACAGCTGATAT
*
9328040 TATTAAGGTTAGCTAATTTAAGATCGCAACCTAAGTTTATTTTAGTTAGTTGATTTAAGATCGCA
66 TATTAAGGTTAGCTAATTTAAGATCGCAACCTAAGTTTATTTGAGTTAGTTGATTTAAGATCGCA
* *
9328105 ACTCTGAACAGATTACTAACCTACGTTCACAGCCGATATTATTAAGGTTAGCTGATTTAAGATCG
131 ACTCTGAACAGATCACTAACCTACGTTCACAACCGATATTATTAAGGTTAGCTGATTTAAGATCG
* * * ** * *
9328170 CAACCTAAGTTTATTTGAGTTAGTTGATTTAATATCGTAACTCCGAACAGCTCACTAACCTTCGT
196 CAACCTAAGTTTATTTGAGTTAGCTAATTTAAGATCACAACTCCGAACAGCTCACTAACCTACGA
*
9328235 TCACAGTTGATATTATTAAGGTTAGCTTATTTAAGATTTCAACCTAAGTTTT
261 TCACAGCTGATATTATTAAGGTTAGCTTATTTAAGATTTCAACCTAAGTTTT
* *
9328287 TTTGAGTTAGCTAATTTAATATCGCAAATCCTAACAGCTCGTTGACCTACGTTCACAGCTGATAT
1 TTTGAGTTAGCTAATTTAATATCGCAAATCCAAACAGCTCGCTGACCTACGTTCACAGCTGATAT
* **
9328352 TATTAAGGTTAGCTAATTTAAGATCAG-AACCTAAGTTTATTTGAGTTTGTTGATTTAAGATTTC
66 TATTAAGGTTAGCTAATTTAAGATC-GCAACCTAAGTTTATTTGAGTTAGTTGATTTAAGATCGC
* * * ** * * *
9328416 AACTCCT-AACA-ACTCGCTGACCTATGTTCACAATTGATATTATTCAGTTTAGCTGATTTAATA
130 AACT-CTGAACAGA-TCACTAACCTACGTTCACAACCGATATTATTAAGGTTAGCTGATTTAAGA
* * * ** * *
9328479 TCGCAACCTAAGTTTATTTGAGTTCGCTAATTTAAGATCACAACTCCTAACAGTTCGTTGATCTA
193 TCGCAACCTAAGTTTATTTGAGTTAGCTAATTTAAGATCACAACTCCGAACAGCTCACTAACCTA
*
9328544 CGATCACAGCTGATATTTTTAA
258 CGATCACAGCTGATATTATTAA
9328566 AGTTTCCTCG
Statistics
Matches: 241, Mismatches: 35, Indels: 6
0.85 0.12 0.02
Matches are distributed among these distances:
311 1 0.00
312 237 0.98
313 3 0.01
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (312 bp):
TTTGAGTTAGCTAATTTAATATCGCAAATCCAAACAGCTCGCTGACCTACGTTCACAGCTGATAT
TATTAAGGTTAGCTAATTTAAGATCGCAACCTAAGTTTATTTGAGTTAGTTGATTTAAGATCGCA
ACTCTGAACAGATCACTAACCTACGTTCACAACCGATATTATTAAGGTTAGCTGATTTAAGATCG
CAACCTAAGTTTATTTGAGTTAGCTAATTTAAGATCACAACTCCGAACAGCTCACTAACCTACGA
TCACAGCTGATATTATTAAGGTTAGCTTATTTAAGATTTCAACCTAAGTTTT
Found at i:9331895 original size:15 final size:15
Alignment explanation
Indices: 9331871--9331900 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9331861 CTCACAATCC
*
9331871 CTTCTGACTTGCATA
1 CTTCTAACTTGCATA
9331886 CTTCTAACTTGCATA
1 CTTCTAACTTGCATA
9331901 GTTCATTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.27, G:0.10, T:0.40
Consensus pattern (15 bp):
CTTCTAACTTGCATA
Found at i:9334770 original size:16 final size:18
Alignment explanation
Indices: 9334731--9334774 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
9334721 TTGAATTTTA
*
9334731 AATATTTTTCATAAATAT
1 AATATTTTTCAAAAATAT
9334749 CAATATTTTT-AAAAATAT
1 -AATATTTTTCAAAAATAT
9334767 -ATATTTTT
1 AATATTTTT
9334775 TATGCAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 8 0.33
18 7 0.29
19 9 0.38
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (18 bp):
AATATTTTTCAAAAATAT
Found at i:9334981 original size:16 final size:16
Alignment explanation
Indices: 9334935--9334981 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
9334925 TTAAAATATT
9334935 TATATTATTTTATTTTA
1 TATATT-TTTTATTTTA
* *
9334952 -ATATTTAATAATTTTA
1 TATATTT-TTTATTTTA
9334968 TATATTTTTTATTT
1 TATATTTTTTATTT
9334982 ATTGTAAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
15 1 0.04
16 17 0.71
17 6 0.25
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TATATTTTTTATTTTA
Found at i:9341893 original size:17 final size:16
Alignment explanation
Indices: 9341852--9341900 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
9341842 GAATATTTTT
9341852 ATAGATTATTAATTTG
1 ATAGATTATTAATTTG
* *
9341868 AGAAAATTAGTTAATTTG
1 A-TAGATTA-TTAATTTG
9341886 ATAGATTAATTAATT
1 ATAGATT-ATTAATT
9341901 AAGGGATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
16 1 0.04
17 15 0.58
18 10 0.38
ACGTcount: A:0.43, C:0.00, G:0.12, T:0.45
Consensus pattern (16 bp):
ATAGATTATTAATTTG
Found at i:9344209 original size:104 final size:103
Alignment explanation
Indices: 9344050--9344643 Score: 713
Period size: 104 Copynumber: 5.7 Consensus size: 103
9344040 CAGCTAACGA
* *
9344050 TTATTTGAGTTAGTTGATTTAATATCGCAACTCCAAACAGCTCGCTGACCTACGTTCACAGCTGA
1 TTATTTGAGTTAGTTGATTTAAGATCGCAACT-CTAACAGCTCGCTGACCTACGTTCACAGCTGA
9344115 TATTATTAAGGTTAGCTAATTTAAGATCGCAACCTAAGT
65 TATTATTAAGGTTAGCTAATTTAAGATCGCAACCTAAGT
* * ** * *
9344154 TTATTTTAGTTAGTTGATTTAAGATCGCAACTCTGAACAGATTACTAACCTACGTTCACAGCCGA
1 TTATTTGAGTTAGTTGATTTAAGATCGCAACTCT-AACAGCTCGCTGACCTACGTTCACAGCTGA
*
9344219 TATTATTAAGGTTAGCTGATTTAAGATCGCAACCTAAGT
65 TATTATTAAGGTTAGCTAATTTAAGATCGCAACCTAAGT
* * * * * * *
9344258 TTATTTGAGTTAGTTGATTTAATATCGTAACTCCGAACAGCTCACTAACCTTCGTTCACAGTTGA
1 TTATTTGAGTTAGTTGATTTAAGATCGCAACT-CTAACAGCTCGCTGACCTACGTTCACAGCTGA
* **
9344323 TATTATTAAGGTTAGCTTATTTAAGATTTCAACCTAAGT
65 TATTATTAAGGTTAGCTAATTTAAGATCGCAACCTAAGT
* * * * * *
9344362 TTTTTTGAGTTAGCTAATTTAATATCGCAAATCCTAACAGCTCGTTGACCTACGTTCACAGCTGA
1 TTATTTGAGTTAGTTGATTTAAGATCGCAACT-CTAACAGCTCGCTGACCTACGTTCACAGCTGA
9344427 TATTATTAAGGTTAGCTAATTTAAGATCAG-AACCTAAGT
65 TATTATTAAGGTTAGCTAATTTAAGATC-GCAACCTAAGT
* ** * * **
9344466 TTATTTGAGTTTGTTGATTTAAGATTTCAACTCCTAACAACTCGCTGACCTATGTTCACAATTGA
1 TTATTTGAGTTAGTTGATTTAAGATCGCAACT-CTAACAGCTCGCTGACCTACGTTCACAGCTGA
* * * *
9344531 TATTATTCAGTTTAGCTGATTTAATATCGCAACCTAAGT
65 TATTATTAAGGTTAGCTAATTTAAGATCGCAACCTAAGT
* * * * * * * *
9344570 TTATTTGAGTTCGCTAATTTAAGATCACAACTCCTAACAGTTCGTTGATCTACGATCACAGCTGA
1 TTATTTGAGTTAGTTGATTTAAGATCGCAACT-CTAACAGCTCGCTGACCTACGTTCACAGCTGA
*
9344635 TATTTTTAA
65 TATTATTAA
9344644 AGTTTCCTCG
Statistics
Matches: 419, Mismatches: 67, Indels: 8
0.85 0.14 0.02
Matches are distributed among these distances:
103 2 0.00
104 416 0.99
105 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (103 bp):
TTATTTGAGTTAGTTGATTTAAGATCGCAACTCTAACAGCTCGCTGACCTACGTTCACAGCTGAT
ATTATTAAGGTTAGCTAATTTAAGATCGCAACCTAAGT
Found at i:9344617 original size:208 final size:208
Alignment explanation
Indices: 9344050--9344643 Score: 786
Period size: 208 Copynumber: 2.9 Consensus size: 208
9344040 CAGCTAACGA
* * *
9344050 TTATTTGAGTTAGTTGATTTAATATCGCAACTCCAAACAGCTCGCTGACCTACGTTCACAGCTGA
1 TTATTTGAGTTAGTTGATTTAATATCTCAACTCCAAACAGCTCGCTGACCTATGTTCACAGTTGA
* * *
9344115 TATTATTAAGGTTAGCTAATTTAAGATCGCAACCTAAGTTTATTTTAGTTAGTTGATTTAAGATC
66 TATTATTAAGGTTAGCTAATTTAAGATCGCAACCTAAGTTTATTTGAGTTAGCTAATTTAAGATC
* * *
9344180 GCAACT-CTGAACAGATTAC--TAACCTACGTTCACAGCCGATATTATTAAGGTTAGCTGATTTA
131 GCAACTCCT-AACAG-TT-CGTTGACCTACGTTCACAGCTGATATTATTAAGGTTAGCTAATTTA
9344242 AGATCGCAACCTAAGT
193 AGATCGCAACCTAAGT
* * *
9344258 TTATTTGAGTTAGTTGATTTAATATCGT-AACTCCGAACAGCTCACTAACCT-TCGTTCACAGTT
1 TTATTTGAGTTAGTTGATTTAATATC-TCAACTCCAAACAGCTCGCTGACCTAT-GTTCACAGTT
* ** * *
9344321 GATATTATTAAGGTTAGCTTATTTAAGATTTCAACCTAAGTTTTTTTGAGTTAGCTAATTTAATA
64 GATATTATTAAGGTTAGCTAATTTAAGATCGCAACCTAAGTTTATTTGAGTTAGCTAATTTAAGA
* *
9344386 TCGCAAATCCTAACAGCTCGTTGACCTACGTTCACAGCTGATATTATTAAGGTTAGCTAATTTAA
129 TCGCAACTCCTAACAGTTCGTTGACCTACGTTCACAGCTGATATTATTAAGGTTAGCTAATTTAA
9344451 GATCAG-AACCTAAGT
194 GATC-GCAACCTAAGT
* * * * * *
9344466 TTATTTGAGTTTGTTGATTTAAGATTTCAACTCCTAACAACTCGCTGACCTATGTTCACAATTGA
1 TTATTTGAGTTAGTTGATTTAATATCTCAACTCCAAACAGCTCGCTGACCTATGTTCACAGTTGA
* * * * *
9344531 TATTATTCAGTTTAGCTGATTTAATATCGCAACCTAAGTTTATTTGAGTTCGCTAATTTAAGATC
66 TATTATTAAGGTTAGCTAATTTAAGATCGCAACCTAAGTTTATTTGAGTTAGCTAATTTAAGATC
* * * *
9344596 ACAACTCCTAACAGTTCGTTGATCTACGATCACAGCTGATATTTTTAA
131 GCAACTCCTAACAGTTCGTTGACCTACGTTCACAGCTGATATTATTAA
9344644 AGTTTCCTCG
Statistics
Matches: 336, Mismatches: 42, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
206 1 0.00
207 2 0.01
208 329 0.98
209 4 0.01
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (208 bp):
TTATTTGAGTTAGTTGATTTAATATCTCAACTCCAAACAGCTCGCTGACCTATGTTCACAGTTGA
TATTATTAAGGTTAGCTAATTTAAGATCGCAACCTAAGTTTATTTGAGTTAGCTAATTTAAGATC
GCAACTCCTAACAGTTCGTTGACCTACGTTCACAGCTGATATTATTAAGGTTAGCTAATTTAAGA
TCGCAACCTAAGT
Found at i:9344638 original size:312 final size:312
Alignment explanation
Indices: 9344053--9344643 Score: 819
Period size: 312 Copynumber: 1.9 Consensus size: 312
9344043 CTAACGATTA
* * *
9344053 TTTGAGTTAGTTGATTTAATATCGCAACTCCAAACAGCTCGCTGACCTACGTTCACAGCTGATAT
1 TTTGAGTTAGCTAATTTAATATCGCAAATCCAAACAGCTCGCTGACCTACGTTCACAGCTGATAT
*
9344118 TATTAAGGTTAGCTAATTTAAGATCGCAACCTAAGTTTATTTTAGTTAGTTGATTTAAGATCGCA
66 TATTAAGGTTAGCTAATTTAAGATCGCAACCTAAGTTTATTTGAGTTAGTTGATTTAAGATCGCA
* *
9344183 ACTCTGAACAGATTACTAACCTACGTTCACAGCCGATATTATTAAGGTTAGCTGATTTAAGATCG
131 ACTCTGAACAGATCACTAACCTACGTTCACAACCGATATTATTAAGGTTAGCTGATTTAAGATCG
* * * ** * *
9344248 CAACCTAAGTTTATTTGAGTTAGTTGATTTAATATCGTAACTCCGAACAGCTCACTAACCTTCGT
196 CAACCTAAGTTTATTTGAGTTAGCTAATTTAAGATCACAACTCCGAACAGCTCACTAACCTACGA
*
9344313 TCACAGTTGATATTATTAAGGTTAGCTTATTTAAGATTTCAACCTAAGTTTT
261 TCACAGCTGATATTATTAAGGTTAGCTTATTTAAGATTTCAACCTAAGTTTT
* *
9344365 TTTGAGTTAGCTAATTTAATATCGCAAATCCTAACAGCTCGTTGACCTACGTTCACAGCTGATAT
1 TTTGAGTTAGCTAATTTAATATCGCAAATCCAAACAGCTCGCTGACCTACGTTCACAGCTGATAT
* **
9344430 TATTAAGGTTAGCTAATTTAAGATCAG-AACCTAAGTTTATTTGAGTTTGTTGATTTAAGATTTC
66 TATTAAGGTTAGCTAATTTAAGATC-GCAACCTAAGTTTATTTGAGTTAGTTGATTTAAGATCGC
* * * ** * * *
9344494 AACTCCT-AACA-ACTCGCTGACCTATGTTCACAATTGATATTATTCAGTTTAGCTGATTTAATA
130 AACT-CTGAACAGA-TCACTAACCTACGTTCACAACCGATATTATTAAGGTTAGCTGATTTAAGA
* * * ** * *
9344557 TCGCAACCTAAGTTTATTTGAGTTCGCTAATTTAAGATCACAACTCCTAACAGTTCGTTGATCTA
193 TCGCAACCTAAGTTTATTTGAGTTAGCTAATTTAAGATCACAACTCCGAACAGCTCACTAACCTA
*
9344622 CGATCACAGCTGATATTTTTAA
258 CGATCACAGCTGATATTATTAA
9344644 AGTTTCCTCG
Statistics
Matches: 241, Mismatches: 35, Indels: 6
0.85 0.12 0.02
Matches are distributed among these distances:
311 1 0.00
312 237 0.98
313 3 0.01
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (312 bp):
TTTGAGTTAGCTAATTTAATATCGCAAATCCAAACAGCTCGCTGACCTACGTTCACAGCTGATAT
TATTAAGGTTAGCTAATTTAAGATCGCAACCTAAGTTTATTTGAGTTAGTTGATTTAAGATCGCA
ACTCTGAACAGATCACTAACCTACGTTCACAACCGATATTATTAAGGTTAGCTGATTTAAGATCG
CAACCTAAGTTTATTTGAGTTAGCTAATTTAAGATCACAACTCCGAACAGCTCACTAACCTACGA
TCACAGCTGATATTATTAAGGTTAGCTTATTTAAGATTTCAACCTAAGTTTT
Found at i:9347973 original size:15 final size:15
Alignment explanation
Indices: 9347949--9347978 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9347939 CTCACAATCC
*
9347949 CTTCTGACTTGCATA
1 CTTCTAACTTGCATA
9347964 CTTCTAACTTGCATA
1 CTTCTAACTTGCATA
9347979 GTTCATTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.27, G:0.10, T:0.40
Consensus pattern (15 bp):
CTTCTAACTTGCATA
Found at i:9350848 original size:16 final size:18
Alignment explanation
Indices: 9350809--9350852 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
9350799 TTGAATTTTA
*
9350809 AATATTTTTCATAAATAT
1 AATATTTTTCAAAAATAT
9350827 CAATATTTTT-AAAAATAT
1 -AATATTTTTCAAAAATAT
9350845 -ATATTTTT
1 AATATTTTT
9350853 TATGCAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 8 0.33
18 7 0.29
19 9 0.38
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (18 bp):
AATATTTTTCAAAAATAT
Found at i:9351059 original size:16 final size:16
Alignment explanation
Indices: 9351013--9351059 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
9351003 TTAAAATATT
9351013 TATATTATTTTATTTTA
1 TATATT-TTTTATTTTA
* *
9351030 -ATATTTAATAATTTTA
1 TATATTT-TTTATTTTA
9351046 TATATTTTTTATTT
1 TATATTTTTTATTT
9351060 ATTGTAAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
15 1 0.04
16 17 0.71
17 6 0.25
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TATATTTTTTATTTTA
Found at i:9356298 original size:21 final size:21
Alignment explanation
Indices: 9356268--9356307 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
9356258 GAGTGAAAAT
*
9356268 ACCTTCGATGTCACGACACTA
1 ACCTTCGATGTCACAACACTA
*
9356289 ACCTTTGATGTCACAACAC
1 ACCTTCGATGTCACAACAC
9356308 CGGACTCGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.33, G:0.12, T:0.25
Consensus pattern (21 bp):
ACCTTCGATGTCACAACACTA
Found at i:9358601 original size:45 final size:46
Alignment explanation
Indices: 9358411--9358663 Score: 372
Period size: 46 Copynumber: 5.6 Consensus size: 46
9358401 TTTGAGTACT
9358411 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
9358457 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAAG-TACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTT-AGCTACACTTA
* * * * *
9358503 TTTGATCAAGTAACAAAGTGATAACTGATAACTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
9358549 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
* *
9358594 TCTGATCAAGTGGCAAAGTGATAAGTGGTAGC-CTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
* *
9358639 TCTAATC-AGGGAC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
9358664 ATCATATATA
Statistics
Matches: 190, Mismatches: 15, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
43 12 0.06
44 4 0.02
45 64 0.34
46 108 0.57
47 2 0.01
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.29
Consensus pattern (46 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
Found at i:9365652 original size:46 final size:46
Alignment explanation
Indices: 9365585--9365792 Score: 323
Period size: 46 Copynumber: 4.6 Consensus size: 46
9365575 TTTGAGTACT
9365585 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
9365631 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAACTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
* * * *
9365677 TTTGATCAAGTAACAAAGTGATAACTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
* *
9365723 TCTGATCAAGTGACAAAGTGATAAGTGGCAGC-CTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
9365768 TCTGATC-AGGGAC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
9365793 ATCATATATA
Statistics
Matches: 149, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
43 12 0.08
44 5 0.03
45 19 0.13
46 113 0.76
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (46 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
Found at i:9368323 original size:28 final size:28
Alignment explanation
Indices: 9368289--9368457 Score: 164
Period size: 29 Copynumber: 5.9 Consensus size: 28
9368279 CCATATAAAT
9368289 AAGACTTTGTGGCTATCTTTGTTAAAGG
1 AAGACTTTGTGGCTATCTTTGTTAAAGG
* *
9368317 AAGACTTTGTGGCGATCTTTGCTATAAGG
1 AAGACTTTGTGGCTATCTTTGTTA-AAGG
*
9368346 AAGACTTTGTGG-TGATCTATGTTATAAGG
1 AAGACTTTGTGGCT-ATCTTTGTTA-AAGG
* * * **
9368375 AAGCCTTAGTGGCTATCTCTGTTAAAAA
1 AAGACTTTGTGGCTATCTTTGTTAAAGG
**
9368403 AATG-CATTTGTGGCTATCTCAGTTAAATGG
1 AA-GAC-TTTGTGGCTATCTTTGTTAAA-GG
*
9368433 ATG-CTTTGTGGCTATCTTTGTTAAA
1 AAGACTTTGTGGCTATCTTTGTTAAA
9368458 ATGATGCTTA
Statistics
Matches: 118, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
28 46 0.39
29 70 0.59
30 2 0.02
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.38
Consensus pattern (28 bp):
AAGACTTTGTGGCTATCTTTGTTAAAGG
Found at i:9377250 original size:6 final size:6
Alignment explanation
Indices: 9377239--9377265 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
9377229 GATTGGTTTA
9377239 ATTTTG ATTTTG ATTTTG ATTTTG ATT
1 ATTTTG ATTTTG ATTTTG ATTTTG ATT
9377266 AAGATATATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.15, T:0.67
Consensus pattern (6 bp):
ATTTTG
Found at i:9381776 original size:9 final size:9
Alignment explanation
Indices: 9381757--9381786 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
9381747 AACTAAATTT
9381757 TAAAG-GTA
1 TAAAGTGTA
9381765 TAAAGTGTA
1 TAAAGTGTA
9381774 TAAAGTGTA
1 TAAAGTGTA
9381783 TAAA
1 TAAA
9381787 ATATTAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 5 0.24
9 16 0.76
ACGTcount: A:0.50, C:0.00, G:0.20, T:0.30
Consensus pattern (9 bp):
TAAAGTGTA
Found at i:9386852 original size:5 final size:6
Alignment explanation
Indices: 9386835--9386859 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
9386825 TTATTATAAA
9386835 TGTTTT TGTTTT TGTTTT TGTTTT T
1 TGTTTT TGTTTT TGTTTT TGTTTT T
9386860 AATTTTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (6 bp):
TGTTTT
Found at i:9386865 original size:18 final size:19
Alignment explanation
Indices: 9386844--9386888 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
9386834 ATGTTTTTGT
* *
9386844 TTTTGTTTTTGTTTTTA-A
1 TTTTATTTTTATTTTTATA
9386862 TTTTATTTTTATTTTTATA
1 TTTTATTTTTATTTTTATA
9386881 TTTCTATT
1 TTT-TATT
9386889 AATTTTACCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 15 0.65
19 4 0.17
20 4 0.17
ACGTcount: A:0.16, C:0.02, G:0.04, T:0.78
Consensus pattern (19 bp):
TTTTATTTTTATTTTTATA
Found at i:9386888 original size:14 final size:12
Alignment explanation
Indices: 9386837--9386879 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
9386827 ATTATAAATG
* *
9386837 TTTTTGTTTTTG
1 TTTTTATTTTTA
*
9386849 TTTTTGTTTTTA
1 TTTTTATTTTTA
*
9386861 ATTTTATTTTTA
1 TTTTTATTTTTA
9386873 TTTTTAT
1 TTTTTAT
9386880 ATTTCTATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.12, C:0.00, G:0.07, T:0.81
Consensus pattern (12 bp):
TTTTTATTTTTA
Found at i:9388062 original size:20 final size:19
Alignment explanation
Indices: 9388024--9388062 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
9388014 ACATTGTCTG
*
9388024 TTTTAATTTTTTTTAAAAC
1 TTTTAATTTCTTTTAAAAC
*
9388043 TTTTAATATTCTTTTGAAAC
1 TTTTAAT-TTCTTTTAAAAC
9388063 ACATTAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.31, C:0.08, G:0.03, T:0.59
Consensus pattern (19 bp):
TTTTAATTTCTTTTAAAAC
Found at i:9390717 original size:150 final size:149
Alignment explanation
Indices: 9390453--9390732 Score: 366
Period size: 150 Copynumber: 1.9 Consensus size: 149
9390443 GATAATAACA
* *
9390453 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGAGATGTTTCCTGTACTGCCAATGCCATATCC
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGAGATCTTTCCTGTACTGCCAACGCCATATCC
* ** * * **
9390518 CAGATATGGTCTTACATGGGAGTTCTCATATTGGTGCCCATGCCATGTCCCAGACATGGTCTTAC
66 CAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACACCATGTCCCAGACATGGTCTTAC
9390583 GGGGGACCTCTTATCTTAG
131 GGGGGACCTCTTATCTTAG
* ** * *
9390602 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTTAT-CT-TGGTGCCAACGTCATG
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGAGA--TCTT-TCCTGTACTGCCAACGCCATA
* * *
9390665 TCCTAGACATGGTCTTACATGGGACCTCTTATCTCGGTGCCAACACCATGTCCCAGACATGGTCT
63 TCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACACCATGTCCCAGACATGGTCT
9390730 TAC
128 TAC
9390733 ATGGTATCTC
Statistics
Matches: 111, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
149 36 0.32
150 69 0.62
151 5 0.05
152 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (149 bp):
TGCCAAAGCCATGTCCCAGACATGGTCTTACATGAGATCTTTCCTGTACTGCCAACGCCATATCC
CAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACACCATGTCCCAGACATGGTCTTAC
GGGGGACCTCTTATCTTAG
Found at i:9390744 original size:50 final size:50
Alignment explanation
Indices: 9390453--9390736 Score: 331
Period size: 50 Copynumber: 5.7 Consensus size: 50
9390443 GATAATAACA
* * * **
9390453 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGAGA--TGTT-TCCTGTAC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTAT-CT-TGG
* * * ** * *
9390502 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTTGG
* * ** *
9390552 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTTATCTTAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTTGG
*
9390602 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTTATCTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTTGG
* * *
9390652 TGCCAACGTCATGTCCTAGACATGGTCTTACATGGGACCTCTTATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTTGG
*
9390702 TGCCAACACCATGTCCCAGACATGGTCTTACATGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGG
9390737 TATCTCTTTA
Statistics
Matches: 200, Mismatches: 32, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
49 33 0.17
50 163 0.81
51 3 0.01
52 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTTGG
Found at i:9395444 original size:6 final size:6
Alignment explanation
Indices: 9395433--9395460 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
9395423 ATATTTTTTT
9395433 ATATTA ATATTA ATATTA ATATTA ATAT
1 ATATTA ATATTA ATATTA ATATTA ATAT
9395461 ATTTTTATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
ATATTA
Found at i:9397226 original size:68 final size:67
Alignment explanation
Indices: 9397107--9397401 Score: 270
Period size: 68 Copynumber: 4.3 Consensus size: 67
9397097 AAATTTAATG
* * * * *
9397107 TGTATGACCATAGCTTGGCTATAGTAACAAAAGGAGTCTACCAGGATGTTAAACATGAGTTCCTA
1 TGTAAGACCATAGCTCGGCTATGGCAAC-AAAGGAGTCTACCAAGATGTTAAACATGAGTTCCTA
9397172 CTA
65 CTA
* * * * * *
9397175 TGTAAGACCATAGCTTGGCAATGGCAACAAATGGAGTCTGCTAAGACGTTAAACATGGGTTCCTA
1 TGTAAGACCATAGCTCGGCTATGGCAACAAA-GGAGTCTACCAAGATGTTAAACATGAGTTCCTA
*
9397240 CTG
65 CTA
* * ** * *
9397243 TGTAAAACCATAGCTCAGCTATGGCAACAAAGGGAGTCTATTAGGATGTTAAACAT-AGGTTCTT
1 TGTAAGACCATAGCTCGGCTATGGCAACAAA-GGAGTCTACCAAGATGTTAAACATGA-GTTCCT
* *
9397307 ATTG
64 ACTA
* * * * *
9397311 TGTAAGACCATAACTCGACTATGGCAACAAAGAGAGT-TCGCCAAGATGTTAAACATGGGTTCAT
1 TGTAAGACCATAGCTCGGCTATGGCAACAAAG-GAGTCT-ACCAAGATGTTAAACATGAGTTCCT
9397375 ACTA
64 ACTA
* * *
9397379 TATAAGAACATAGCTCGGATATG
1 TGTAAGACCATAGCTCGGCTATG
9397402 ACGTCAGGTA
Statistics
Matches: 183, Mismatches: 39, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
67 5 0.03
68 178 0.97
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.26
Consensus pattern (67 bp):
TGTAAGACCATAGCTCGGCTATGGCAACAAAGGAGTCTACCAAGATGTTAAACATGAGTTCCTAC
TA
Found at i:9397362 original size:136 final size:137
Alignment explanation
Indices: 9397113--9397394 Score: 331
Period size: 136 Copynumber: 2.1 Consensus size: 137
9397103 AATGTGTATG
** *
9397113 ACCATAGCTTGGCTATAGTAACAAAAGGAGTCTACCAGGATGTTAAACATGAGTTCCTACTATGT
1 ACCATAGCTCAGCTATAGCAACAAAAGGAGTCTACCAGGATGTTAAACATGAGTTCCTACTATGT
* * * * * *
9397178 AAGACCATAGCTTGGCAATGGCAACAAATGGAGTCTGCTAAGACGTTAAACATGGGTTCCTACTG
66 AAGACCATAACTCGACAATGGCAACAAATGGAGTCTGCCAAGACGTTAAACATGGGTTCATACTA
*
9397243 TGTAA-A
131 TATAAGA
* * ** * * *
9397249 ACCATAGCTCAGCTATGGCAACAAAGGGAGTCTATTAGGATGTTAAACAT-AGGTTCTTATTGTG
1 ACCATAGCTCAGCTATAGCAACAAAAGGAGTCTACCAGGATGTTAAACATGA-GTTCCTACTATG
* *
9397313 TAAGACCATAACTCGACTATGGCAACAAA-GAGAGT-TCGCCAAGATGTTAAACATGGGTTCATA
65 TAAGACCATAACTCGACAATGGCAACAAATG-GAGTCT-GCCAAGACGTTAAACATGGGTTCATA
9397376 CTATATAAGA
128 CTATATAAGA
9397386 A-CATAGCTC
1 ACCATAGCTC
9397395 GGATATGACG
Statistics
Matches: 123, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
135 3 0.02
136 118 0.96
137 2 0.02
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (137 bp):
ACCATAGCTCAGCTATAGCAACAAAAGGAGTCTACCAGGATGTTAAACATGAGTTCCTACTATGT
AAGACCATAACTCGACAATGGCAACAAATGGAGTCTGCCAAGACGTTAAACATGGGTTCATACTA
TATAAGA
Found at i:9406469 original size:5 final size:5
Alignment explanation
Indices: 9406454--9406484 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
9406444 AATAAATAAA
*
9406454 AGAAG AAAAG AGAAG AGAAG AGAAG AGAAG A
1 AGAAG AGAAG AGAAG AGAAG AGAAG AGAAG A
9406485 TATAAGAGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (5 bp):
AGAAG
Found at i:9410381 original size:21 final size:21
Alignment explanation
Indices: 9410344--9410386 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
9410334 TTAGGTTTTA
*
9410344 TGGCTCAACACAGGTTG-ATG
1 TGGCTCAACAAAGGTTGCATG
9410364 TGGCTCAACATAAGGTTGCATG
1 TGGCTCAACA-AAGGTTGCATG
9410386 T
1 T
9410387 TGTAACACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 6 0.30
22 4 0.20
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (21 bp):
TGGCTCAACAAAGGTTGCATG
Found at i:9422769 original size:16 final size:16
Alignment explanation
Indices: 9422750--9422803 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
9422740 TATTTCACAA
9422750 AGCATGATTATCACCC
1 AGCATGATTATCACCC
* * **
9422766 AGCATTATCTATGACAA
1 AGCATGAT-TATCACCC
9422783 AGCATGATTATCACCC
1 AGCATGATTATCACCC
9422799 AGCAT
1 AGCAT
9422804 TATCTATGTA
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
16 17 0.59
17 12 0.41
ACGTcount: A:0.35, C:0.26, G:0.13, T:0.26
Consensus pattern (16 bp):
AGCATGATTATCACCC
Found at i:9422788 original size:33 final size:33
Alignment explanation
Indices: 9422746--9422811 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
9422736 CAGATATTTC
9422746 ACAAAGCATGATTATCACCCAGCATTATCTATG
1 ACAAAGCATGATTATCACCCAGCATTATCTATG
9422779 ACAAAGCATGATTATCACCCAGCATTATCTATG
1 ACAAAGCATGATTATCACCCAGCATTATCTATG
9422812 TACCAAAATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.36, C:0.24, G:0.12, T:0.27
Consensus pattern (33 bp):
ACAAAGCATGATTATCACCCAGCATTATCTATG
Found at i:9424644 original size:67 final size:69
Alignment explanation
Indices: 9424520--9424647 Score: 163
Period size: 70 Copynumber: 1.9 Consensus size: 69
9424510 TCTGAATAAG
* * ** *
9424520 AAAGGTAAAATATGTCGTTTTGATAAATGTTTACCTTTTCTAAAGTTAAAAGTCAAAACCATTAA
1 AAAGGTAAAATACGTCATTTTGATAAATGTTTACCTCATCTAAAGTTAAAAGACAAAACCATTAA
9424585 GTTA
66 GTTA
* *
9424589 AAAGGTAAAACTACGTTATTTTTATAAATGTTTA-CTCAT-TAAA-TTAAAAGACAAAACCA
1 AAAGGTAAAA-TACGTCATTTTGATAAATGTTTACCTCATCTAAAGTTAAAAGACAAAACCA
9424648 CTATATTGTT
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
67 15 0.29
68 4 0.08
69 13 0.25
70 19 0.37
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.34
Consensus pattern (69 bp):
AAAGGTAAAATACGTCATTTTGATAAATGTTTACCTCATCTAAAGTTAAAAGACAAAACCATTAA
GTTA
Found at i:9427124 original size:23 final size:23
Alignment explanation
Indices: 9427094--9427195 Score: 114
Period size: 23 Copynumber: 4.4 Consensus size: 23
9427084 ATAGAACTTC
* *
9427094 CCACAAAGACATTGTAGGATACA
1 CCACAAAGACATTGCAGAATACA
* *
9427117 CCACAAAGGCATTGCAGAATACG
1 CCACAAAGACATTGCAGAATACA
* *
9427140 CCACATAGGCATTGCAGAATACA
1 CCACAAAGACATTGCAGAATACA
* * *
9427163 CCACAAAGACATTACAGTATACG
1 CCACAAAGACATTGCAGAATACA
*
9427186 TCACAAAGAC
1 CCACAAAGAC
9427196 TCCATCGAAT
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 67 1.00
ACGTcount: A:0.42, C:0.25, G:0.17, T:0.16
Consensus pattern (23 bp):
CCACAAAGACATTGCAGAATACA
Found at i:9427162 original size:46 final size:46
Alignment explanation
Indices: 9427094--9427195 Score: 132
Period size: 46 Copynumber: 2.2 Consensus size: 46
9427084 ATAGAACTTC
* * * *
9427094 CCACAAAGACATTGTAGGATACACCACAAAGGCATTGCAGAATACG
1 CCACAAAGACATTGCAGAATACACCACAAAGACATTACAGAATACG
* * *
9427140 CCACATAGGCATTGCAGAATACACCACAAAGACATTACAGTATACG
1 CCACAAAGACATTGCAGAATACACCACAAAGACATTACAGAATACG
*
9427186 TCACAAAGAC
1 CCACAAAGAC
9427196 TCCATCGAAT
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.42, C:0.25, G:0.17, T:0.16
Consensus pattern (46 bp):
CCACAAAGACATTGCAGAATACACCACAAAGACATTACAGAATACG
Found at i:9427239 original size:23 final size:23
Alignment explanation
Indices: 9427212--9427401 Score: 105
Period size: 23 Copynumber: 8.3 Consensus size: 23
9427202 GAATATGTCG
* *
9427212 TAAAGGCTTCATAGATTATGCTA
1 TAAAGGCTTCATAGATTACGCCA
* * * * * *
9427235 CAAAGGCTCCAAAGAATACACTA
1 TAAAGGCTTCATAGATTACGCCA
* *
9427258 TAAAGGCTTCATAAATTAAGCCA
1 TAAAGGCTTCATAGATTACGCCA
* * *
9427281 TAAAGGCTCTACA-A-AATACACTA
1 TAAAGGCT-T-CATAGATTACGCCA
* *
9427304 TAAAGGCTTAATAGATTATGCCA
1 TAAAGGCTTCATAGATTACGCCA
* * * *
9427327 CAAAGGCTCCACAGAATACGCCA
1 TAAAGGCTTCATAGATTACGCCA
* * *
9427350 TAAAGGCATAATAGATTATGCCA
1 TAAAGGCTTCATAGATTACGCCA
* * * * *
9427373 AAAAGGCTCCACATAATACGCCA
1 TAAAGGCTTCATAGATTACGCCA
9427396 TAAAGG
1 TAAAGG
9427402 AATCATAAAT
Statistics
Matches: 118, Mismatches: 45, Indels: 8
0.69 0.26 0.05
Matches are distributed among these distances:
21 1 0.01
22 2 0.02
23 111 0.94
24 2 0.02
25 2 0.02
ACGTcount: A:0.43, C:0.21, G:0.15, T:0.22
Consensus pattern (23 bp):
TAAAGGCTTCATAGATTACGCCA
Found at i:9427385 original size:46 final size:46
Alignment explanation
Indices: 9427212--9427457 Score: 260
Period size: 46 Copynumber: 5.3 Consensus size: 46
9427202 GAATATGTCG
* * * *
9427212 TAAAGGCTTCATAGATTATGCTACAAAGGCTCCA-AAGAATACACTA
1 TAAAGGCATCATAGATTATGCCACAAAGGCTCCACAA-AATACGCCA
* * * * * * *
9427258 TAAAGGCTTCATAAATTAAGCCATAAAGGCTCTACAAAATACACTA
1 TAAAGGCATCATAGATTATGCCACAAAGGCTCCACAAAATACGCCA
* * *
9427304 TAAAGGCTTAATAGATTATGCCACAAAGGCTCCACAGAATACGCCA
1 TAAAGGCATCATAGATTATGCCACAAAGGCTCCACAAAATACGCCA
* * *
9427350 TAAAGGCATAATAGATTATGCCAAAAAGGCTCCACATAATACGCCA
1 TAAAGGCATCATAGATTATGCCACAAAGGCTCCACAAAATACGCCA
* * * * * **
9427396 TAAAGGAATCATAAATTTTTCCACAAAGGCTCCATAAAATGTGCCA
1 TAAAGGCATCATAGATTATGCCACAAAGGCTCCACAAAATACGCCA
9427442 TAAAGGCATCATAGAT
1 TAAAGGCATCATAGAT
9427458 AACCTATAAC
Statistics
Matches: 171, Mismatches: 28, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
46 169 0.99
47 2 0.01
ACGTcount: A:0.42, C:0.20, G:0.15, T:0.23
Consensus pattern (46 bp):
TAAAGGCATCATAGATTATGCCACAAAGGCTCCACAAAATACGCCA
Found at i:9427454 original size:23 final size:23
Alignment explanation
Indices: 9427392--9427454 Score: 65
Period size: 23 Copynumber: 2.7 Consensus size: 23
9427382 CACATAATAC
* * *
9427392 GCCATAAAGGAATCATAAATTTT
1 GCCATAAAGGCATCATAAAATGT
* *
9427415 TCCACAAAGGC-TCCATAAAATGT
1 GCCATAAAGGCAT-CATAAAATGT
9427438 GCCATAAAGGCATCATA
1 GCCATAAAGGCATCATA
9427455 GATAACCTAT
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
22 1 0.03
23 29 0.94
24 1 0.03
ACGTcount: A:0.41, C:0.21, G:0.14, T:0.24
Consensus pattern (23 bp):
GCCATAAAGGCATCATAAAATGT
Found at i:9428928 original size:29 final size:29
Alignment explanation
Indices: 9428756--9428959 Score: 153
Period size: 29 Copynumber: 7.0 Consensus size: 29
9428746 ACGACGTATC
* * *
9428756 GACGCCCATCGAATATAAAAAGGGATAGT
1 GACGACCATCGAATATGAAAAGGGATGGT
** ** * *
9428785 TTCGATTATC-AACTGTGAAAAGGGATGAT
1 GACGACCATCGAA-TATGAAAAGGGATGGT
9428814 GACGACCATC-AACTATGAAAAGGGATGGT
1 GACGACCATCGAA-TATGAAAAGGGATGGT
* *
9428843 GACGACCATCAAATATGAAAAGAGG-TAGT
1 GACGACCATCGAATATGAAAAG-GGATGGT
** * *
9428872 TTCGACTATCGACTATGAAAAGGGATGGT
1 GACGACCATCGAATATGAAAAGGGATGGT
* *
9428901 GACAACCATCGAATATGAAAATGGATGGT
1 GACGACCATCGAATATGAAAAGGGATGGT
*** * *
9428930 TTTGACCATCGATTAAAGAAAAGGGATGGT
1 GACGACCATCGAAT-ATGAAAAGGGATGGT
9428960 TTCGATCATC
Statistics
Matches: 135, Mismatches: 35, Indels: 9
0.75 0.20 0.05
Matches are distributed among these distances:
28 4 0.03
29 114 0.84
30 17 0.13
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.23
Consensus pattern (29 bp):
GACGACCATCGAATATGAAAAGGGATGGT
Found at i:9428939 original size:87 final size:87
Alignment explanation
Indices: 9428756--9428929 Score: 235
Period size: 87 Copynumber: 2.0 Consensus size: 87
9428746 ACGACGTATC
* * * * *
9428756 GACGCCCATCGAATATAAAAAGGGATAGTTTCGATTATCAACTGTGAAAAGGGATGATGACGACC
1 GACGACCATCAAATATAAAAAGGGATAGTTTCGACTATCAACTATGAAAAGGGATGATGACAACC
9428821 ATCAACTATGAAAAGGGATGGT
66 ATCAACTATGAAAAGGGATGGT
* * *
9428843 GACGACCATCAAATATGAAAAGAGG-TAGTTTCGACTATCGACTATGAAAAGGGATGGTGACAAC
1 GACGACCATCAAATATAAAAAG-GGATAGTTTCGACTATCAACTATGAAAAGGGATGATGACAAC
*
9428907 CATCGAA-TATGAAAATGGATGGT
65 CATC-AACTATGAAAAGGGATGGT
9428930 TTTGACCATC
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
87 72 0.95
88 4 0.05
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.22
Consensus pattern (87 bp):
GACGACCATCAAATATAAAAAGGGATAGTTTCGACTATCAACTATGAAAAGGGATGATGACAACC
ATCAACTATGAAAAGGGATGGT
Found at i:9428941 original size:58 final size:58
Alignment explanation
Indices: 9428816--9428959 Score: 182
Period size: 58 Copynumber: 2.5 Consensus size: 58
9428806 GGGATGATGA
* * *
9428816 CGACCATCAACTATGAAAAGGGATGGTGACGACCATCAAATATGAAAAGAGGTAGTTT
1 CGACCATCGACTATGAAAAGGGATGGTGACAACCATCAAATATGAAAAGAGATAGTTT
* * *
9428874 CGACTATCGACTATGAAAAGGGATGGTGACAACCATCGAATATGAAAATG-GATGGTTT
1 CGACCATCGACTATGAAAAGGGATGGTGACAACCATCAAATATGAAAA-GAGATAGTTT
* * *
9428932 TGACCATCGATTAAAGAAAAGGGATGGT
1 CGACCATCGACT-ATGAAAAGGGATGGT
9428960 TTCGATCATC
Statistics
Matches: 74, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
58 59 0.80
59 15 0.20
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.22
Consensus pattern (58 bp):
CGACCATCGACTATGAAAAGGGATGGTGACAACCATCAAATATGAAAAGAGATAGTTT
Found at i:9436638 original size:18 final size:18
Alignment explanation
Indices: 9436624--9436662 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 18
9436614 TCCTCTCTGG
9436624 TTTCTACCCCATCTCAGGT
1 TTTC-ACCCCATCTCAGGT
9436643 TTTCACCCCATCTCAGGT
1 TTTCACCCCATCTCAGGT
9436661 TT
1 TT
9436663 GGTGATCTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.15, C:0.36, G:0.10, T:0.38
Consensus pattern (18 bp):
TTTCACCCCATCTCAGGT
Found at i:9444969 original size:12 final size:12
Alignment explanation
Indices: 9444952--9444977 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
9444942 TAAAATACTT
9444952 ACCAATCATGAG
1 ACCAATCATGAG
9444964 ACCAATCATGAG
1 ACCAATCATGAG
9444976 AC
1 AC
9444978 AAGTACCAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.27, G:0.15, T:0.15
Consensus pattern (12 bp):
ACCAATCATGAG
Found at i:9445199 original size:24 final size:24
Alignment explanation
Indices: 9445167--9445218 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
9445157 AGTTTCACGC
9445167 AAAC-ACATGGAAACACATCAATT
1 AAACAACATGGAAACACATCAATT
*
9445190 AAACAACATGGACACACATCAATT
1 AAACAACATGGAAACACATCAATT
9445214 AAACA
1 AAACA
9445219 TGAATTTCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
23 4 0.15
24 23 0.85
ACGTcount: A:0.54, C:0.23, G:0.08, T:0.15
Consensus pattern (24 bp):
AAACAACATGGAAACACATCAATT
Found at i:9446630 original size:29 final size:30
Alignment explanation
Indices: 9446561--9446632 Score: 85
Period size: 29 Copynumber: 2.4 Consensus size: 30
9446551 AATTTTTAAA
* *
9446561 TTATACATGAACTTTAATGTATTGTACAAT
1 TTATACATGAAATTTAATGTATGGTACAAT
*
9446591 TTGATAGATGAAATTTAAT-T-TGGTACAAT
1 TT-ATACATGAAATTTAATGTATGGTACAAT
9446620 TATATACATGAAA
1 T-TATACATGAAA
9446633 CTCTGATTGT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
29 18 0.50
30 4 0.11
31 14 0.39
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.40
Consensus pattern (30 bp):
TTATACATGAAATTTAATGTATGGTACAAT
Found at i:9446680 original size:31 final size:31
Alignment explanation
Indices: 9446622--9446680 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
9446612 GGTACAATTA
* *
9446622 TATACATGAAACTCTGATTGTGTTTCAAGTG
1 TATACATGAAACTCTAATTGTGATTCAAGTG
* *
9446653 TATACATGAAACTTTAATTTTGATTCAA
1 TATACATGAAACTCTAATTGTGATTCAA
9446681 TCATACACAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.41
Consensus pattern (31 bp):
TATACATGAAACTCTAATTGTGATTCAAGTG
Found at i:9448201 original size:25 final size:26
Alignment explanation
Indices: 9448155--9448203 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
9448145 GTTTTTAATT
*
9448155 TATTTTAAATTTATTTTGTTAGTTAC
1 TATTATAAATTTATTTTGTTAGTTAC
9448181 TATTATAAA-TTA-TTTGTTTAGTT
1 TATTATAAATTTATTTTG-TTAGTT
9448204 TAATGTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 4 0.19
25 9 0.43
26 8 0.38
ACGTcount: A:0.29, C:0.02, G:0.08, T:0.61
Consensus pattern (26 bp):
TATTATAAATTTATTTTGTTAGTTAC
Found at i:9454791 original size:110 final size:106
Alignment explanation
Indices: 9454487--9455304 Score: 989
Period size: 110 Copynumber: 7.6 Consensus size: 106
9454477 AAATAAATAA
* * * * *
9454487 AAAAACAAAATAAAATTACATT-ATAACATATCACATTATACATTAAACT-AA-ACAAATAATTT
1 AAAAAC-AAA-AAAATTACATTCATAAAAAATCACA--AAACACTAAACTAAACACAAACAATTT
9454549 ATAACCTAATCATAAATTACTAACAAAATAACTTTAAAATAATTT
62 ATAACCTAATCATAAATTACTAACAAAATAACTTTAAAATAATTT
* * * * *
9454594 AAAAAACACAAAAAAAATTTATATTTATAACAAGTCACAATAAATACTAAACTAAACACAAACAA
1 --AAAA-AC-AAAAAAA-TTACATTCATAAAAAATCAC-A-AAACACTAAACTAAACACAAACAA
*
9454659 TTTATAACCTAATCATAAATTACTAACAAAATAACTTTCAAATAATTT
59 TTTATAACCTAATCATAAATTACTAACAAAATAACTTTAAAATAATTT
*
9454707 AAAAGAGCAAAAAAATTACATTAATAAAAAATCACAATAAACACTAAACTAAACACAAACAATTT
1 AAAA-A-CAAAAAAATTACATTCATAAAAAATCAC-A-AAACACTAAACTAAACACAAACAATTT
* * *
9454772 ATAACCTAATCATAAATTACTAACAAAACAACTTTCAAATAATTA
62 ATAACCTAATCATAAATTACTAACAAAATAACTTTAAAATAATTT
* * *
9454817 AAAATAAAAAAAAATTTACATCCATAAAAAATCACAATAAACATTAAACTAAACACAAACAATTT
1 AAAA-ACAAAAAAA-TTACATTCATAAAAAATCAC-A-AAACACTAAACTAAACACAAACAATTT
* *
9454882 A-AACCTAACCATAAATTACTAACAAAATTACTTTAAAATAATTT
62 ATAACCTAATCATAAATTACTAACAAAATAACTTTAAAATAATTT
9454926 AAAAATACAAAAAAATTACATTCATAAAAAATCACAAAACACTAAACTAAACACAAACAATTTAT
1 -AAAA-ACAAAAAAATTACATTCATAAAAAATCACAAAACACTAAACTAAACACAAACAATTTAT
*
9454991 AACCTAATCATAAATTACTAA-AAGAATAACTATAAAATAATTTT
64 AACCTAATCATAAATTACTAACAA-AATAACTTTAAAATAA-TTT
9455035 AAAAA-ATAAAAAATTTACATTCATAAAAAATCACAAAACACTAAACTAAACACAAACAATTTAT
1 AAAAACA-AAAAAA-TTACATTCATAAAAAATCACAAAACACTAAACTAAACACAAACAATTTAT
* * *
9455099 AACCTAATAATAAATTATTAACAAAATAACTATAAAATAATTT
64 AACCTAATCATAAATTACTAACAAAATAACTTTAAAATAATTT
** * * * * *
9455142 --TTA-AAAAAAATTACATTAATAAAAATTTACAAAACACTAAATTAAACACAGACAATTTATAA
1 AAAAACAAAAAAATTACATTCATAAAAAATCACAAAACACTAAACTAAACACAAACAATTTATAA
* * *
9455204 CCTGATCATAAATTACTAACCAAATAATTTTAAAATAA-TT
66 CCTAATCATAAATTACTAACAAAATAACTTTAAAATAATTT
* *
9455244 ---AA-AAAAAATTTACATTCATAACAAATCACAAAACACTAAACTAAACACAAACAATTTATAA
1 AAAAACAAAAAAATTACATTCATAAAAAATCACAAAACACTAAACTAAACACAAACAATTTATAA
9455305 TAATTAATAA
Statistics
Matches: 639, Mismatches: 55, Indels: 38
0.87 0.08 0.05
Matches are distributed among these distances:
101 53 0.08
102 2 0.00
103 79 0.12
104 6 0.01
105 2 0.00
106 1 0.00
107 39 0.06
108 124 0.19
109 77 0.12
110 166 0.26
111 32 0.05
112 4 0.01
113 54 0.08
ACGTcount: A:0.58, C:0.15, G:0.01, T:0.26
Consensus pattern (106 bp):
AAAAACAAAAAAATTACATTCATAAAAAATCACAAAACACTAAACTAAACACAAACAATTTATAA
CCTAATCATAAATTACTAACAAAATAACTTTAAAATAATTT
Found at i:9455240 original size:211 final size:215
Alignment explanation
Indices: 9454498--9455304 Score: 1031
Period size: 217 Copynumber: 3.8 Consensus size: 215
9454488 AAAACAAAAT
* * * * *
9454498 AAAATTACATT-ATAACATATCACATTATACATTAAACT-AA-ACAAATAATTTATAACCTAATC
1 AAAATTACATTAATAAAAAATCACA--AAACACTAAACTAAACACAAACAATTTATAACCTAATC
* * *
9454560 ATAAATTACTAACAAAATAACTTTAAAATAATTTAAAAAACACAAAAAAAATTTATATTTATAAC
64 ATAAATTACTAACAAAATAACTTTAAAATAA-TT-AAAAACA-AAAAAAAATTTACATTCATAAA
* *
9454625 AAGTCACAATAAATACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAACAAAA
126 AAATCACAATAAACACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAACAAAA
* *
9454690 TAACTTTCAAATAATTTAAAAGAGCAAA
191 TAACTTTAAAATAATTT--AATA-CAAA
9454718 AAAATTACATTAATAAAAAATCACAATAAACACTAAACTAAACACAAACAATTTATAACCTAATC
1 AAAATTACATTAATAAAAAATCAC-A-AAACACTAAACTAAACACAAACAATTTATAACCTAATC
* * * *
9454783 ATAAATTACTAACAAAACAACTTTCAAATAATTAAAAATAAAAAAAAATTTACATCCATAAAAAA
64 ATAAATTACTAACAAAATAACTTTAAAATAATTAAAAACAAAAAAAAATTTACATTCATAAAAAA
* * *
9454848 TCACAATAAACATTAAACTAAACACAAACAATTTA-AACCTAACCATAAATTACTAACAAAATTA
129 TCACAATAAACACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAACAAAATAA
9454912 CTTTAAAATAATTTAAAAATACAAA
194 CTTTAAAATAATTT---AATACAAA
*
9454937 AAAATTACATTCATAAAAAATCACAAAACACTAAACTAAACACAAACAATTTATAACCTAATCAT
1 AAAATTACATTAATAAAAAATCACAAAACACTAAACTAAACACAAACAATTTATAACCTAATCAT
* * *
9455002 AAATTACTAA-AAGAATAACTATAAAATAATTTTAAAA-AATAAAAAATTTACATTCATAAAAAA
66 AAATTACTAACAA-AATAACTTTAAAATAA-TTAAAAACAAAAAAAAATTTACATTCATAAAAAA
* *
9455065 TCAC-A-AAACACTAAACTAAACACAAACAATTTATAACCTAATAATAAATTATTAACAAAATAA
129 TCACAATAAACACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAACAAAATAA
* *
9455128 CTATAAAATAATTT-TTA-AAA
194 CTTTAAAATAATTTAATACAAA
* * * * *
9455148 AAAATTACATTAATAAAAATTTACAAAACACTAAATTAAACACAGACAATTTATAACCTGATCAT
1 AAAATTACATTAATAAAAAATCACAAAACACTAAACTAAACACAAACAATTTATAACCTAATCAT
* * *
9455213 AAATTACTAACCAAATAATTTTAAAATAATT-------AAAAAAAATTTACATTCATAACAAATC
66 AAATTACTAACAAAATAACTTTAAAATAATTAAAAACAAAAAAAAATTTACATTCATAAAAAATC
9455271 AC-A-AAACACTAAACTAAACACAAACAATTTATAA
131 ACAATAAACACTAAACTAAACACAAACAATTTATAA
9455305 TAATTAATAA
Statistics
Matches: 534, Mismatches: 44, Indels: 34
0.87 0.07 0.06
Matches are distributed among these distances:
204 59 0.11
210 2 0.00
211 86 0.16
212 3 0.01
215 27 0.05
216 41 0.08
217 91 0.17
218 7 0.01
219 67 0.13
220 69 0.13
221 27 0.05
222 5 0.01
223 50 0.09
ACGTcount: A:0.58, C:0.15, G:0.01, T:0.27
Consensus pattern (215 bp):
AAAATTACATTAATAAAAAATCACAAAACACTAAACTAAACACAAACAATTTATAACCTAATCAT
AAATTACTAACAAAATAACTTTAAAATAATTAAAAACAAAAAAAAATTTACATTCATAAAAAATC
ACAATAAACACTAAACTAAACACAAACAATTTATAACCTAATCATAAATTACTAACAAAATAACT
TTAAAATAATTTAATACAAA
Found at i:9455301 original size:101 final size:100
Alignment explanation
Indices: 9455024--9455304 Score: 383
Period size: 103 Copynumber: 2.8 Consensus size: 100
9455014 GAATAACTAT
9455024 AAAATAATTTTAAAA-AA-T--AAAAAATTTACATTCATAAAAAATCACAAAACACTAAACTAAA
1 AAAATAATTTTAAAATAATTAAAAAAAATTTACATTCAT-AAAAATCACAAAACACTAAACTAAA
*
9455085 CACAAACAATTTATAACCTAATAATAAATTATTAAC
65 CACAAACAATTTATAACCTAATAATAAATTACTAAC
* * * * *
9455121 AAAATAACTATAAAATAATTTTTAAAAAAAA-TTACATTAATAAAAATTTACAAAACACTAAATT
1 AAAATAATTTTAAAATAA---TTAAAAAAAATTTACATTCATAAAAA-TCACAAAACACTAAACT
* * *
9455185 AAACACAGACAATTTATAACCTGATCATAAATTACTAAC
62 AAACACAAACAATTTATAACCTAATAATAAATTACTAAC
*
9455224 CAAATAATTTTAAAATAATTAAAAAAAATTTACATTCATAACAAATCACAAAACACTAAACTAAA
1 AAAATAATTTTAAAATAATTAAAAAAAATTTACATTCATAA-AAATCACAAAACACTAAACTAAA
9455289 CACAAACAATTTATAA
65 CACAAACAATTTATAA
9455305 TAATTAATAA
Statistics
Matches: 158, Mismatches: 16, Indels: 16
0.83 0.08 0.08
Matches are distributed among these distances:
97 13 0.08
98 2 0.01
100 10 0.06
101 44 0.28
102 9 0.06
103 74 0.47
104 6 0.04
ACGTcount: A:0.58, C:0.14, G:0.01, T:0.27
Consensus pattern (100 bp):
AAAATAATTTTAAAATAATTAAAAAAAATTTACATTCATAAAAATCACAAAACACTAAACTAAAC
ACAAACAATTTATAACCTAATAATAAATTACTAAC
Found at i:9455416 original size:23 final size:23
Alignment explanation
Indices: 9455388--9455441 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
9455378 TTTTTCTTTG
* * *
9455388 TTTCTTTCTTCTTATTCTTTTCC
1 TTTCTTTCTTCTCATTCCTCTCC
*
9455411 TTTCTTTCTTCTCCTTCCTCTCC
1 TTTCTTTCTTCTCATTCCTCTCC
9455434 TTTCTTTC
1 TTTCTTTC
9455442 CTTTTTTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.02, C:0.33, G:0.00, T:0.65
Consensus pattern (23 bp):
TTTCTTTCTTCTCATTCCTCTCC
Found at i:9455778 original size:25 final size:26
Alignment explanation
Indices: 9455736--9455788 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 26
9455726 TGACACCACT
* * *
9455736 AATAAAATAATAATTTTTTTTTAAAA
1 AATAAAATAATAAGTTTTATTAAAAA
9455762 AATAAAA-AATAAGTTTTATTAAAAA
1 AATAAAATAATAAGTTTTATTAAAAA
9455787 AA
1 AA
9455789 AGTGGTGCCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (26 bp):
AATAAAATAATAAGTTTTATTAAAAA
Found at i:9457229 original size:11 final size:11
Alignment explanation
Indices: 9457204--9457253 Score: 68
Period size: 11 Copynumber: 4.7 Consensus size: 11
9457194 ATTAAAATCA
9457204 TTAAAAATA--
1 TTAAAAATATT
9457213 TTAAAAATATT
1 TTAAAAATATT
9457224 TTAAAAATATT
1 TTAAAAATATT
* *
9457235 GTAAAAACATT
1 TTAAAAATATT
9457246 TTAAAAAT
1 TTAAAAAT
9457254 TAATTAAATT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
9 9 0.26
11 26 0.74
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (11 bp):
TTAAAAATATT
Found at i:9457246 original size:22 final size:20
Alignment explanation
Indices: 9457162--9457253 Score: 84
Period size: 22 Copynumber: 4.5 Consensus size: 20
9457152 TTTTTTTAAA
9457162 ATTTTAAAAA-ATATAAAAAC
1 ATTTTAAAAATAT-TAAAAAC
* *
9457182 TACTTTTTAAAA-ATTAAAATC
1 -A-TTTTAAAAATATTAAAAAC
*
9457203 A--TTAAAAATATTAAAAAT
1 ATTTTAAAAATATTAAAAAC
9457221 ATTTTAAAAATATTGTAAAAAC
1 ATTTTAAAAATA-T-TAAAAAC
9457243 ATTTTAAAAAT
1 ATTTTAAAAAT
9457254 TAATTAAATT
Statistics
Matches: 59, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
17 6 0.10
18 8 0.14
20 10 0.17
21 8 0.14
22 27 0.46
ACGTcount: A:0.58, C:0.04, G:0.01, T:0.37
Consensus pattern (20 bp):
ATTTTAAAAATATTAAAAAC
Found at i:9457261 original size:22 final size:21
Alignment explanation
Indices: 9457204--9457261 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 21
9457194 ATTAAAATCA
*
9457204 TTAAAAAT-ATTAAAAATATT
1 TTAAAAATAATTAAAAACATT
*
9457224 TTAAAAATATTGTAAAAACATT
1 TTAAAAATAAT-TAAAAACATT
9457246 TTAAAAATTAATTAAA
1 TTAAAAA-TAATTAAA
9457262 TTTTGATATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
20 8 0.25
21 1 0.03
22 20 0.62
23 3 0.09
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (21 bp):
TTAAAAATAATTAAAAACATT
Found at i:9463878 original size:14 final size:17
Alignment explanation
Indices: 9463847--9463883 Score: 53
Period size: 14 Copynumber: 2.4 Consensus size: 17
9463837 ATTATAAAGG
9463847 ATATTATTAAATTAATT
1 ATATTATTAAATTAATT
9463864 ATATTA-TAAA-T-ATT
1 ATATTATTAAATTAATT
9463878 ATATTA
1 ATATTA
9463884 AGAAATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 9 0.45
15 1 0.05
16 4 0.20
17 6 0.30
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATATTATTAAATTAATT
Found at i:9464058 original size:14 final size:14
Alignment explanation
Indices: 9464032--9464082 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
9464022 GAAAACAAAA
9464032 GAAATAAAATAAAG
1 GAAATAAAATAAAG
*
9464046 GAAATAAAGTAAAG
1 GAAATAAAATAAAG
* * *
9464060 TAAGTTAAAATAAAA
1 GAA-ATAAAATAAAG
9464075 G-AATAAAA
1 GAAATAAAA
9464083 GAAACAAAAG
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
13 5 0.17
14 16 0.55
15 8 0.28
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.18
Consensus pattern (14 bp):
GAAATAAAATAAAG
Found at i:9464093 original size:17 final size:16
Alignment explanation
Indices: 9464071--9464104 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
9464061 AAGTTAAAAT
9464071 AAAAGAATAAAAGAAAC
1 AAAAGAA-AAAAGAAAC
*
9464088 AAAAGAAGAAAGAAAC
1 AAAAGAAAAAAGAAAC
9464104 A
1 A
9464105 GAATAGCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.76, C:0.06, G:0.15, T:0.03
Consensus pattern (16 bp):
AAAAGAAAAAAGAAAC
Found at i:9465246 original size:37 final size:39
Alignment explanation
Indices: 9465187--9465282 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
9465177 CGGATAGATT
* * * *
9465187 CGATGAGGTACTGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
9465224 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
9465263 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
9465283 TTCTGGTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 24 0.50
40 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:9470406 original size:14 final size:17
Alignment explanation
Indices: 9470375--9470411 Score: 53
Period size: 14 Copynumber: 2.4 Consensus size: 17
9470365 ATTATAAAGG
9470375 ATATTATTAAATTAATT
1 ATATTATTAAATTAATT
9470392 ATATTA-TAAA-T-ATT
1 ATATTATTAAATTAATT
9470406 ATATTA
1 ATATTA
9470412 AGAAATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 9 0.45
15 1 0.05
16 4 0.20
17 6 0.30
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATATTATTAAATTAATT
Found at i:9470578 original size:14 final size:14
Alignment explanation
Indices: 9470559--9470609 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
9470549 AGAAACCAAA
9470559 GAAATAAAATAAAG
1 GAAATAAAATAAAG
*
9470573 GAAATAAAGTAAAG
1 GAAATAAAATAAAG
* * *
9470587 TAAGTTAAAATAAAA
1 GAA-ATAAAATAAAG
9470602 G-AATAAAA
1 GAAATAAAA
9470610 GAAACAAAAG
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
13 5 0.17
14 16 0.55
15 8 0.28
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.18
Consensus pattern (14 bp):
GAAATAAAATAAAG
Found at i:9470620 original size:17 final size:16
Alignment explanation
Indices: 9470598--9470631 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
9470588 AAGTTAAAAT
9470598 AAAAGAATAAAAGAAAC
1 AAAAGAA-AAAAGAAAC
*
9470615 AAAAGAAGAAAGAAAC
1 AAAAGAAAAAAGAAAC
9470631 A
1 A
9470632 GAATAGCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.76, C:0.06, G:0.15, T:0.03
Consensus pattern (16 bp):
AAAAGAAAAAAGAAAC
Found at i:9471784 original size:37 final size:39
Alignment explanation
Indices: 9471725--9471820 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
9471715 CGGATAGATT
* * * *
9471725 CGATGAGGTACTGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
9471762 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
9471801 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
9471821 TTCTGGTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 24 0.50
40 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:9473322 original size:14 final size:15
Alignment explanation
Indices: 9473293--9473332 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
9473283 TTAATTTATG
9473293 AAGTTACAAA-TCGT
1 AAGTTACAAACTCGT
9473307 AAGTTACAAACT-GT
1 AAGTTACAAACTCGT
9473321 AAGCTT-CAAACT
1 AAG-TTACAAACT
9473333 ATGCATATAC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 21 0.88
15 3 0.12
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.28
Consensus pattern (15 bp):
AAGTTACAAACTCGT
Found at i:9492862 original size:83 final size:83
Alignment explanation
Indices: 9492735--9492889 Score: 256
Period size: 83 Copynumber: 1.9 Consensus size: 83
9492725 GTAACGCGTA
* *
9492735 GGTTTGTGCAAGTGTAAACAGTCGTTATCAAGTAATAAGTAAGTATCGAGTTATCGTCTCCATAA
1 GGTTTGTGCAAGTGTAAACAGTCGTCATCAAGTAATAAGTAAGTATCGAGTTATCGTCTCCACAA
9492800 GGATTGTTGTAATGCTGG
66 GGATTGTTGTAATGCTGG
* * * *
9492818 GGTTTGTGCAAGTGTACACAGTCGTCATCAAGTAATAAGTAAGTATTGAGTTATTGTCTCCACAG
1 GGTTTGTGCAAGTGTAAACAGTCGTCATCAAGTAATAAGTAAGTATCGAGTTATCGTCTCCACAA
9492883 GGATTGT
66 GGATTGT
9492890 ATTTGTGCTA
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
83 66 1.00
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (83 bp):
GGTTTGTGCAAGTGTAAACAGTCGTCATCAAGTAATAAGTAAGTATCGAGTTATCGTCTCCACAA
GGATTGTTGTAATGCTGG
Found at i:9496603 original size:38 final size:38
Alignment explanation
Indices: 9496552--9496647 Score: 165
Period size: 38 Copynumber: 2.5 Consensus size: 38
9496542 TATCCAATAT
9496552 ATAAGCTCGTAGAGGAGCTCACATAGAATACTTATCAC
1 ATAAGCTCGTAGAGGAGCTCACATAGAATACTTATCAC
*
9496590 ATAAGCTCGTAGAGGAGCTCATATAGAATACTTATCAC
1 ATAAGCTCGTAGAGGAGCTCACATAGAATACTTATCAC
* *
9496628 ATAGGCTCTTAGAGGAGCTC
1 ATAAGCTCGTAGAGGAGCTC
9496648 GTACAAAATA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 55 1.00
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (38 bp):
ATAAGCTCGTAGAGGAGCTCACATAGAATACTTATCAC
Found at i:9496658 original size:38 final size:37
Alignment explanation
Indices: 9496552--9496662 Score: 143
Period size: 38 Copynumber: 2.9 Consensus size: 37
9496542 TATCCAATAT
9496552 ATAAGCTCGTAGAGGAGCTC-ACATAGAATACTTATCAC
1 ATAAGCTCGTAGAGGAGCTCTACA-A-AATACTTATCAC
* *
9496590 ATAAGCTCGTAGAGGAGCTCATATAGAATACTTATCAC
1 ATAAGCTCGTAGAGGAGCTC-TACAAAATACTTATCAC
* *
9496628 ATAGGCTCTTAGAGGAGCTCGTACAAAATACTTAT
1 ATAAGCTCGTAGAGGAGCTC-TACAAAATACTTAT
9496663 TAGTTTCAGC
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
38 62 0.97
40 2 0.03
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (37 bp):
ATAAGCTCGTAGAGGAGCTCTACAAAATACTTATCAC
Found at i:9502866 original size:38 final size:37
Alignment explanation
Indices: 9502813--9502910 Score: 115
Period size: 38 Copynumber: 2.6 Consensus size: 37
9502803 AAATCCTTGG
* *
9502813 TATAATTATTGTAATTATAATTTATGATTGAATATTAT
1 TATAATTA-TGTAATTATAATTTATGATTAAAAATTAT
* * * *
9502851 TATAATTACTATAATTGTAATTTTTGGTTAAAAATTAT
1 TATAATTA-TGTAATTATAATTTATGATTAAAAATTAT
9502889 TATAATTATGGTAATTATAATT
1 TATAATTAT-GTAATTATAATT
9502911 ATTATATTTG
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
37 1 0.02
38 49 0.98
ACGTcount: A:0.40, C:0.01, G:0.08, T:0.51
Consensus pattern (37 bp):
TATAATTATGTAATTATAATTTATGATTAAAAATTAT
Found at i:9523720 original size:44 final size:44
Alignment explanation
Indices: 9523638--9523918 Score: 169
Period size: 44 Copynumber: 6.5 Consensus size: 44
9523628 AACCCGACCT
* * * *
9523638 ACTGCAACTTCAGAGG-TATAGGATTCATCA-TTTTAATCTGCTCC
1 ACTGCAACTTCAG-GGAGATAGGATTAAT-AGCTTCAATCTGCTCC
* ** *
9523682 ATTGCAGTTTCAGGGAGATAGGATTAATAGCTTCAATCTGCTTC
1 ACTGCAACTTCAGGGAGATAGGATTAATAGCTTCAATCTGCTCC
* ** * *
9523726 GCTGCAACTTCAGGGAGATAGGATTGGTATCTTCAACCTGCTCC
1 ACTGCAACTTCAGGGAGATAGGATTAATAGCTTCAATCTGCTCC
* * * * * * *
9523770 ACTGAAACTCCAGGGAGATAAGGCTTGAT-G---CGATTTGCTCT
1 ACTGCAACTTCAGGGAGAT-AGGATTAATAGCTTCAATCTGCTCC
* * * * * * *
9523811 ACTGCAACTTCAGAGAGATAAGATTCATGGTTTTAATCTGCTCT
1 ACTGCAACTTCAGGGAGATAGGATTAATAGCTTCAATCTGCTCC
* * ** ** **
9523855 ACTGTAACTTCATGGAGATAGGATTGGTTTCTTCTGTCTGCTCC
1 ACTGCAACTTCAGGGAGATAGGATTAATAGCTTCAATCTGCTCC
*
9523899 ACTGCAACTTCAGAGAGATA
1 ACTGCAACTTCAGGGAGATA
9523919 AGACTGGATG
Statistics
Matches: 178, Mismatches: 52, Indels: 14
0.73 0.21 0.06
Matches are distributed among these distances:
40 6 0.03
41 24 0.13
43 3 0.02
44 138 0.78
45 7 0.04
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (44 bp):
ACTGCAACTTCAGGGAGATAGGATTAATAGCTTCAATCTGCTCC
Found at i:9523917 original size:129 final size:129
Alignment explanation
Indices: 9523731--9523963 Score: 358
Period size: 129 Copynumber: 1.8 Consensus size: 129
9523721 GCTTCGCTGC
* * *
9523731 AACTTCAGGGAGATAGGATTGGTATCTTCAACCTGCTCCACTGAAACTCCAGGGAGATAAGGCTT
1 AACTTCAGGGAGATAGGATTGGTATCTTCAACCTGCTCCACTGAAACTCCAGAGAGATAAGACTG
*
9523796 GATGCGATTTGCTCTACTGCAACTTCAGAGAGATAAGATTCATGGTTTTAATCTGCTCTACTGT
66 GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATTCATGGTTTTAATCTGCTCTACTGT
* * *** * *
9523860 AACTTCATGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTG
1 AACTTCAGGGAGATAGGATTGGTATCTTCAACCTGCTCCACTGAAACTCCAGAGAGATAAGACTG
*
9523925 GATGCGATCTGCTCTACTGCAACTTTAGAGAGATAAGAT
66 GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGAT
9523964 CTGCAGTTTT
Statistics
Matches: 92, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
129 92 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (129 bp):
AACTTCAGGGAGATAGGATTGGTATCTTCAACCTGCTCCACTGAAACTCCAGAGAGATAAGACTG
GATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATTCATGGTTTTAATCTGCTCTACTGT
Found at i:9523962 original size:41 final size:41
Alignment explanation
Indices: 9523763--9523962 Score: 152
Period size: 44 Copynumber: 4.7 Consensus size: 41
9523753 TATCTTCAAC
* * * * * *
9523763 CTGCTCCACTGAAACTCCAGGGAGATAAGGCTTGATGCGAT
1 CTGCTCTACTGCAACTTCAGAGAGATAAGACTGGATGCGAT
* * ***
9523804 TTGCTCTACTGCAACTTCAGAGAGATAAGATTCATGGTTTTAAT
1 CTGCTCTACTGCAACTTCAGAGAGATAAGA--C-TGGATGCGAT
* * * * *
9523848 CTGCTCTACTGTAACTTCATG-GAGATAGGATTGGTTTCTTCTG-T
1 CTGCTCTACTGCAACTTCA-GAGAGATAAGACTGG---ATGC-GAT
*
9523892 CTGCTCCACTGCAACTTCAGAGAGATAAGACTGGATGCGAT
1 CTGCTCTACTGCAACTTCAGAGAGATAAGACTGGATGCGAT
*
9523933 CTGCTCTACTGCAACTTTAGAGAGATAAGA
1 CTGCTCTACTGCAACTTCAGAGAGATAAGA
9523963 TCTGCAGTTT
Statistics
Matches: 123, Mismatches: 26, Indels: 20
0.73 0.15 0.12
Matches are distributed among these distances:
40 1 0.01
41 58 0.47
43 2 0.02
44 61 0.50
45 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (41 bp):
CTGCTCTACTGCAACTTCAGAGAGATAAGACTGGATGCGAT
Found at i:9523973 original size:129 final size:127
Alignment explanation
Indices: 9523727--9523996 Score: 355
Period size: 129 Copynumber: 2.1 Consensus size: 127
9523717 ATCTGCTTCG
*
9523727 CTGCAACTTCAGGGAGATAGGATTGGTATCTTCAACCTGCTCCACTGAAACTCCAGGGAGATAAG
1 CTGCAACTTCAGGGAGATAGGATTGGTATCTTCAACCTGCTCCACTGAAACTCCAGAGAGATAAG
* * *
9523792 GCTTGATGCGATTTGCTCTACTGCAACTTCAGAGAGATAAGATTCATGGTTTTAATCTG-CTCT
66 ACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATTCA-GGTTTTAA-CTGCCTCT
* * * *** * *
9523855 ACTGTAACTTCATGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGCAACTTCAGAGAGATAA
1 -CTGCAACTTCAGGGAGATAGGATTGGTATCTTCAACCTGCTCCACTGAAACTCCAGAGAGATAA
* *
9523920 GACTGGATGCGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTGCA-GTTTTGACTGCCTCT
65 GACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGAT-T-CAGGTTTTAACTGCCTCT
9523984 CTGCAACTTCAGG
1 CTGCAACTTCAGG
9523997 AACTTCATGG
Statistics
Matches: 122, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
128 14 0.11
129 105 0.86
130 1 0.01
131 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (127 bp):
CTGCAACTTCAGGGAGATAGGATTGGTATCTTCAACCTGCTCCACTGAAACTCCAGAGAGATAAG
ACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATTCAGGTTTTAACTGCCTCT
Found at i:9524369 original size:90 final size:91
Alignment explanation
Indices: 9524125--9524375 Score: 314
Period size: 89 Copynumber: 2.8 Consensus size: 91
9524115 AACCTACTCC
* * * * *
9524125 ACTGCAAACTCAGAGAGGCGAGGCTGATGTTTTCGATCCGCTTCACTTCCAATACAGGAAGACAA
1 ACTGCAAACTCAGAGAGGCGAGGCTGGTGTCTTCGATCTGCTTCACTACAAATACAGGAAGACAA
* *
9524190 GACCTGCTATCTTCAGTCTGTTCCGT
66 GATCTGCCATCTTCAGTCTGTTCCGT
* * * *
9524216 --TACAAACTCA-AGGAGGCGAGGCTGGTGTCTTCAATCTACTTCACTACTAATACAGGAAGACA
1 ACTGCAAACTCAGA-GAGGCGAGGCTGGTGTCTTCGATCTGCTTCACTACAAATACAGGAAGACA
9524278 AGATCTGCCATCTTCAGTCTGTTCC-T
65 AGATCTGCCATCTTCAGTCTGTTCCGT
* * * *
9524304 ACTGCAAACTTAGAGAGGCGAGGCTGGTGTCTTCGATCTGCTTCGCTGCAAACT-CAGGAAAACA
1 ACTGCAAACTCAGAGAGGCGAGGCTGGTGTCTTCGATCTGCTTCACTACAAA-TACAGGAAGACA
9524368 AGATCTGC
65 AGATCTGC
9524376 TACCTTCGAT
Statistics
Matches: 137, Mismatches: 18, Indels: 11
0.83 0.11 0.07
Matches are distributed among these distances:
88 2 0.01
89 75 0.55
90 58 0.42
91 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (91 bp):
ACTGCAAACTCAGAGAGGCGAGGCTGGTGTCTTCGATCTGCTTCACTACAAATACAGGAAGACAA
GATCTGCCATCTTCAGTCTGTTCCGT
Found at i:9538730 original size:15 final size:16
Alignment explanation
Indices: 9538698--9538731 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
9538688 TGGGCTAGAC
*
9538698 TTTGGGTTTTGGTCTA
1 TTTGGGTTTGGGTCTA
9538714 TTTGGGTTTGGGT-TA
1 TTTGGGTTTGGGTCTA
9538729 TTT
1 TTT
9538732 TATTTGTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.06, C:0.03, G:0.32, T:0.59
Consensus pattern (16 bp):
TTTGGGTTTGGGTCTA
Found at i:9539434 original size:9 final size:10
Alignment explanation
Indices: 9539420--9539451 Score: 50
Period size: 9 Copynumber: 3.4 Consensus size: 10
9539410 AAGTAAAATG
9539420 AAATTAA-TA
1 AAATTAATTA
9539429 AAATTAATTA
1 AAATTAATTA
9539439 AAA-TAATTA
1 AAATTAATTA
9539448 AAAT
1 AAAT
9539452 AAATATGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 16 0.76
10 5 0.24
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (10 bp):
AAATTAATTA
Done.