genome.fa.s26.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Length:  60343961

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   

This is table  40  of  204  ( 24404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11571467--11571506	20	2.0	20	85	9	55	22	27	0	50	1.50
11581574--11581748	88	2.0	88	88	6	266	37	22	8	32	1.83
11581761--11581788	13	2.2	13	100	0	56	71	0	7	21	1.09
11581788--11581835	18	2.6	19	77	6	55	62	0	2	35	1.07
11581780--11581889	46	2.4	44	81	13	109	60	0	1	37	1.14
11582033--11582152	46	2.5	48	80	8	147	31	5	1	60	1.30
11582100--11582169	19	3.7	19	73	7	79	25	4	2	67	1.23
11582271--11582443	89	2.0	88	83	5	224	32	10	19	37	1.85
11582949--11582984	8	4.2	8	86	13	54	75	0	2	22	0.94
11582937--11582981	18	2.4	18	92	3	72	73	0	4	22	1.01
11583230--11583312	10	8.1	10	70	6	51	25	2	2	69	1.12
11583246--11583300	19	2.8	18	78	13	56	30	1	1	65	1.13
11583217--11583271	28	2.0	28	82	7	67	27	1	3	67	1.17
11583249--11583307	30	1.9	31	86	3	84	30	3	1	64	1.20
11583279--11583312	11	3.1	11	91	0	50	20	2	0	76	0.92
11583316--11583532	89	2.4	89	86	4	303	33	9	22	35	1.86
11589548--11589660	44	2.5	45	85	1	147	25	21	14	38	1.91
11589548--11589708	45	3.6	45	80	8	152	24	21	13	39	1.90
11591097--11591130	16	2.1	16	88	0	50	29	26	14	29	1.95
11591940--11592215	141	2.0	141	79	6	308	46	14	11	28	1.79
11596219--11596388	46	3.7	46	86	1	216	28	24	20	27	1.99
11598290--11598341	25	2.1	25	96	0	95	36	0	44	19	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11599222--11599263	18	2.5	17	81	18	52	42	40	0	16	1.48
11608389--11608455	9	7.4	9	78	6	73	26	8	22	41	1.83
11608387--11608455	18	3.8	18	86	0	102	28	8	21	40	1.83
11608509--11608545	9	4.1	9	85	0	56	43	13	10	32	1.79
11608724--11608783	30	2.0	31	86	3	86	20	40	0	40	1.52
11618694--11618728	17	2.1	17	94	0	61	45	17	5	31	1.71
11618698--11618736	17	2.3	17	86	0	51	43	15	2	38	1.60
11619679--11619749	30	2.5	29	80	11	85	45	16	1	36	1.57
11619679--11619753	28	2.6	30	80	16	88	45	17	1	36	1.57
11623503--11623547	9	5.0	9	83	0	54	15	40	6	37	1.74
11625699--11625767	10	6.7	10	74	9	50	43	5	0	50	1.26
11625711--11625757	16	2.9	16	90	6	69	46	6	0	46	1.28
11633772--11633821	24	2.1	23	81	3	55	36	0	4	60	1.16
11634938--11635006	34	2.0	34	100	0	138	37	17	15	28	1.91
11635148--11635177	15	1.9	16	93	6	53	13	0	13	73	1.10
11636578--11636618	18	2.3	18	80	12	50	46	9	9	34	1.70
11638133--11638162	3	10.0	3	100	0	60	33	33	0	33	1.58
11638776--11638805	15	1.9	16	93	6	53	30	0	3	66	1.07
11639355--11639405	25	2.0	25	81	7	59	45	1	1	50	1.24
11657745--11657843	52	1.9	51	87	2	144	32	16	9	42	1.79
11657745--11657845	26	3.9	25	87	6	121	33	15	8	41	1.79
11659669--11659724	28	2.0	28	96	0	103	35	12	12	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11664971--11665021	24	2.1	24	96	0	93	29	27	13	29	1.94
11667101--11667144	9	4.9	9	100	0	88	34	0	20	45	1.51
11670956--11671042	44	2.0	43	93	2	147	32	17	13	36	1.89
11678310--11678350	21	2.0	21	90	0	64	29	21	29	19	1.98
11689859--11689888	15	2.0	15	93	0	51	20	36	0	43	1.52
11690570--11690681	25	4.5	25	74	11	97	31	22	22	24	1.99
11690570--11690682	50	2.3	51	84	4	142	30	22	23	23	1.99
11699469--11699496	2	14.0	2	100	0	56	50	0	50	0	1.00
11701057--11701328	43	6.4	42	84	6	282	32	21	22	23	1.98
11701758--11701805	12	4.2	12	74	15	57	0	41	20	37	1.53
11701770--11701838	21	3.3	21	85	0	84	2	40	20	36	1.67
11703867--11703945	39	2.0	39	87	2	113	36	5	41	16	1.70
11703900--11703950	23	2.2	24	82	10	61	37	3	39	19	1.70
11704484--11704536	22	2.5	22	96	3	99	37	26	3	32	1.74
11704497--11704573	15	5.3	14	72	7	55	40	29	1	28	1.65
11704500--11704574	29	2.6	30	83	6	84	38	30	1	29	1.66
11705681--11705971	113	2.6	113	80	2	307	30	18	21	28	1.97
11706273--11706311	6	6.3	6	88	5	51	15	23	0	61	1.33
11706273--11706311	18	2.1	19	90	4	62	15	23	0	61	1.33
11718161--11718243	33	2.5	34	88	3	116	43	6	4	45	1.49
11727359--11727397	12	3.2	12	85	3	51	84	0	12	2	0.72
11728526--11728619	34	2.8	34	80	15	88	28	28	24	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11728526--11728604	17	4.7	16	84	3	77	29	27	24	18	1.98
11731914--11732499	40	14.7	40	92	2	955	22	26	20	30	1.98
11731914--11732500	199	2.9	200	93	2	1011	22	26	20	30	1.98
11739629--11740216	40	14.7	40	94	0	1005	22	26	20	30	1.98
11745802--11745949	17	8.8	18	70	16	77	33	31	18	15	1.93
11749279--11749346	34	2.0	34	100	0	136	29	20	26	23	1.99
11758183--11758226	23	1.9	23	86	9	63	29	2	20	47	1.62
11760236--11760276	18	2.2	19	87	12	59	68	7	19	4	1.32
11760292--11760340	24	2.1	24	85	11	66	67	4	16	12	1.37
11777746--11777862	44	2.7	45	80	6	116	23	21	21	33	1.97
11777808--11778073	43	6.2	42	72	11	168	23	21	23	31	1.98
11777831--11777986	44	3.6	43	72	10	140	25	25	22	27	2.00
11777820--11778031	84	2.5	86	89	5	331	23	23	23	30	1.99
11797394--11797456	22	3.0	21	77	13	74	50	25	11	12	1.73
11797366--11797484	42	2.8	43	87	3	154	47	24	12	15	1.81
11797719--11797853	67	2.0	67	98	0	261	32	36	8	22	1.85
11801026--11801051	13	2.0	13	100	0	52	23	30	15	30	1.95
11802840--11802885	13	3.5	13	81	0	56	26	2	17	54	1.54
11809017--11810337	656	2.0	658	92	1	2202	34	14	14	35	1.88
11813280--11813319	20	2.0	20	90	9	64	37	22	0	40	1.54
11813553--11813743	42	4.5	42	71	7	118	38	17	18	24	1.92
11813601--11813743	43	3.4	42	71	7	119	37	16	19	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11813594--11813755	85	1.9	85	83	5	211	38	17	19	24	1.93
11815187--11815471	85	3.4	85	87	0	401	22	15	25	36	1.94
11815194--11815463	43	6.4	42	73	7	208	21	15	25	37	1.93
11818136--11818175	20	2.0	20	90	9	64	37	22	0	40	1.54
11818409--11818599	42	4.5	42	71	7	118	38	17	18	24	1.92
11818457--11818599	43	3.4	42	71	7	119	37	16	19	25	1.93
11818450--11818611	85	1.9	85	83	5	211	38	17	19	24	1.93
11820043--11820327	85	3.4	85	87	0	401	22	15	25	36	1.94
11820050--11820319	43	6.4	42	73	7	208	21	15	25	37	1.93
11830766--11831190	214	2.0	214	81	6	495	35	17	20	26	1.95
11836925--11837000	27	2.8	27	87	0	107	27	27	18	26	1.98
11841066--11841097	14	2.3	14	94	0	55	21	12	31	34	1.91
11854259--11854301	20	2.2	20	100	0	86	74	0	9	16	1.06
11858983--11859008	4	6.5	4	100	0	52	76	0	23	0	0.78
11860987--11861026	20	2.0	20	90	0	62	22	7	2	67	1.28
11871369--11871399	16	1.9	16	100	0	62	0	35	19	45	1.51
11872636--11872677	22	2.1	19	86	13	57	45	2	0	52	1.13
11873407--11873444	8	4.6	8	90	6	58	34	0	2	63	1.09
11873400--11873451	25	2.1	24	86	10	70	34	0	1	63	1.06
11873407--11873444	17	2.3	17	90	4	60	34	0	2	63	1.09
11898579--11898701	57	2.1	59	85	8	173	44	8	21	25	1.79
11899680--11899710	5	6.2	5	92	0	53	0	35	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11909186--11909210	13	1.9	13	100	0	50	24	12	16	48	1.79
11910514--11910600	23	3.8	23	80	6	104	22	14	25	36	1.93
11916185--11916219	18	1.9	18	94	0	61	65	8	5	20	1.40
11917222--11917251	12	2.5	12	94	0	51	23	40	30	6	1.80
11920732--11920894	77	2.1	77	97	1	310	41	22	1	34	1.62
11927603--11927642	16	2.6	15	80	7	53	62	7	30	0	1.23
11936011--11936041	13	2.4	13	94	0	53	45	3	22	29	1.68
11942037--11942096	27	2.2	27	84	0	75	26	23	10	40	1.86
11942102--11942277	45	3.9	44	79	5	181	21	21	15	42	1.89
11945483--11945530	22	2.1	23	84	3	62	75	2	10	12	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204