Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60343961
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 596159 characters in sequence are not A, C, G, or T
File 49 of 204
Found at i:14315371 original size:46 final size:45
Alignment explanation
Indices: 14315302--14315389 Score: 124
Period size: 46 Copynumber: 1.9 Consensus size: 45
14315292 TTACTTTTTT
*
14315302 AAAAATCTTTAATTTCCATTATTTA-TTAGTCACTTAATTTCTAAA
1 AAAAATCTTTAATTTCCACTATTTACTTA-TCACTTAATTTCTAAA
* *
14315347 AAAAATCTTTTAATTTTCACTATTTACTTATTACTTAATTTCT
1 AAAAATC-TTTAATTTCCACTATTTACTTATCACTTAATTTCT
14315390 TGGAATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
45 7 0.18
46 28 0.74
47 3 0.08
ACGTcount: A:0.35, C:0.14, G:0.01, T:0.50
Consensus pattern (45 bp):
AAAAATCTTTAATTTCCACTATTTACTTATCACTTAATTTCTAAA
Found at i:14315610 original size:20 final size:21
Alignment explanation
Indices: 14315566--14315618 Score: 72
Period size: 20 Copynumber: 2.5 Consensus size: 21
14315556 TTATTTATTT
14315566 TATATTTTTAAATATTAAAACC
1 TATATTTTT-AATATTAAAACC
**
14315588 TATATTTTTAATA-TATCACC
1 TATATTTTTAATATTAAAACC
14315608 TATATTTTTAA
1 TATATTTTTAA
14315619 ATTCATTACT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 16 0.55
21 4 0.14
22 9 0.31
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (21 bp):
TATATTTTTAATATTAAAACC
Found at i:14315719 original size:37 final size:34
Alignment explanation
Indices: 14315635--14315725 Score: 119
Period size: 34 Copynumber: 2.6 Consensus size: 34
14315625 TACTAATAAC
* * *
14315635 TTTTTAAATTTTAAACATAATTATTTATTTTATG
1 TTTTTAAATATTATACATAATTATTTATTTTATA
*
14315669 TTTTTAAATATTATATATAATTATTTATTTTTAAATA
1 TTTTTAAATATTATACATAATTATTTA-TTTT--ATA
14315706 TTTTTAAATATTATACATAA
1 TTTTTAAATATTATACATAA
14315726 AATTTTAAAT
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
34 24 0.49
35 4 0.08
37 21 0.43
ACGTcount: A:0.40, C:0.02, G:0.01, T:0.57
Consensus pattern (34 bp):
TTTTTAAATATTATACATAATTATTTATTTTATA
Found at i:14315846 original size:9 final size:9
Alignment explanation
Indices: 14315832--14315864 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
14315822 ACTAATTTCC
14315832 ACATAACAT
1 ACATAACAT
14315841 ACATAAC-T
1 ACATAACAT
14315849 CACATAACAT
1 -ACATAACAT
14315859 ACATAA
1 ACATAA
14315865 TAACTTATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 1 0.05
9 20 0.91
10 1 0.05
ACGTcount: A:0.55, C:0.24, G:0.00, T:0.21
Consensus pattern (9 bp):
ACATAACAT
Found at i:14315854 original size:18 final size:18
Alignment explanation
Indices: 14315831--14315917 Score: 76
Period size: 18 Copynumber: 5.0 Consensus size: 18
14315821 TACTAATTTC
14315831 CACATAACATACATAACT
1 CACATAACATACATAACT
14315849 CACATAACATACATAA-T
1 CACATAACATACATAACT
* * *
14315866 AACTTATATATATCATAACT
1 CACATA-ACATA-CATAACT
*
14315886 --C--AACTTACATAACT
1 CACATAACATACATAACT
*
14315900 CACATAACTTACATAACT
1 CACATAACATACATAACT
14315918 TTTATATACC
Statistics
Matches: 57, Mismatches: 5, Indels: 14
0.75 0.07 0.18
Matches are distributed among these distances:
14 7 0.12
15 3 0.05
16 2 0.04
17 5 0.09
18 34 0.60
19 5 0.09
20 1 0.02
ACGTcount: A:0.47, C:0.24, G:0.00, T:0.29
Consensus pattern (18 bp):
CACATAACATACATAACT
Found at i:14315898 original size:14 final size:14
Alignment explanation
Indices: 14315879--14315949 Score: 54
Period size: 14 Copynumber: 4.6 Consensus size: 14
14315869 TTATATATAT
14315879 CATAACTCAACTTA
1 CATAACTCAACTTA
14315893 CATAACTCACATAACTTA
1 CATAACT--C--AACTTA
**
14315911 CATAACTTTTA-TATA
1 CATAAC-TCAACT-TA
14315926 CCATAACTCAACTTA
1 -CATAACTCAACTTA
14315941 CATAACTCA
1 CATAACTCA
14315950 CATAACTTAT
Statistics
Matches: 45, Mismatches: 4, Indels: 16
0.69 0.06 0.25
Matches are distributed among these distances:
14 17 0.38
15 7 0.16
16 8 0.18
18 12 0.27
19 1 0.02
ACGTcount: A:0.42, C:0.27, G:0.00, T:0.31
Consensus pattern (14 bp):
CATAACTCAACTTA
Found at i:14315904 original size:9 final size:9
Alignment explanation
Indices: 14315887--14316092 Score: 109
Period size: 9 Copynumber: 22.2 Consensus size: 9
14315877 ATCATAACTC
14315887 AACTTACAT
1 AACTTACAT
*
14315896 AACTCACAT
1 AACTTACAT
14315905 AACTTACAT
1 AACTTACAT
*
14315914 AACTTTTATAT
1 AAC--TTACAT
* *
14315925 ACCATA-ACT
1 AACTTACA-T
14315934 CAACTTACAT
1 -AACTTACAT
*
14315944 AACTCACAT
1 AACTTACAT
*
14315953 AACTTATAT
1 AACTTACAT
*
14315962 ATATCATA-ACT
1 A-A-CTTACA-T
14315973 CAACTTACAT
1 -AACTTACAT
14315983 AACTTACAT
1 AACTTACAT
14315992 AA--TACAT
1 AACTTACAT
* *
14315999 AA-ATATAT
1 AACTTACAT
* *
14316007 ATCATATCAT
1 AACTTA-CAT
*
14316017 AGCTTACAT
1 AACTTACAT
*
14316026 AACTCACAT
1 AACTTACAT
14316035 AACTTACAT
1 AACTTACAT
14316044 AACTTA-AT
1 AACTTACAT
*
14316052 AACTTATGTAT
1 AACTTA--CAT
* *
14316063 ATCATATCAT
1 AACTTA-CAT
14316073 AACTTACAT
1 AACTTACAT
*
14316082 AACTTGCAT
1 AACTTACAT
14316091 AA
1 AA
14316093 TACATAAATA
Statistics
Matches: 154, Mismatches: 27, Indels: 32
0.72 0.13 0.15
Matches are distributed among these distances:
7 7 0.05
8 14 0.09
9 89 0.58
10 23 0.15
11 20 0.13
12 1 0.01
ACGTcount: A:0.44, C:0.21, G:0.01, T:0.34
Consensus pattern (9 bp):
AACTTACAT
Found at i:14315935 original size:48 final size:48
Alignment explanation
Indices: 14315840--14316113 Score: 229
Period size: 48 Copynumber: 5.8 Consensus size: 48
14315830 CCACATAACA
*
14315840 TACATAACTCACATAACATACATAATAACTTATATATATCATAACTCAACT
1 TACATAACTCACATAACTTAC---ATAACTTATATATATCATAACTCAACT
* *
14315891 TACATAACTCACATAACTTACATAACTTTTATATACCATAACTCAACT
1 TACATAACTCACATAACTTACATAACTTATATATATCATAACTCAACT
14315939 TACAT-A---AC-T--C--ACATAACTTATATATATCATAACTCAACT
1 TACATAACTCACATAACTTACATAACTTATATATATCATAACTCAACT
* * *
14315978 TACATAACTTACATAA--TACATAAATATATATCATATCATAGCTTACATAACT
1 TACATAACTCACATAACTTACATAACT-TATAT-ATATCATAAC-T-C--AACT
* * * *
14316030 CACATAACTTACATAACTTA-ATAACTTATGTATATCATATCAT-AACT
1 TACATAACTCACATAACTTACATAACTTATATATATCATAAC-TCAACT
** *
14316077 TACATAACTTGCATAA--TACATAA-ATATATATATCATA
1 TACATAACTCACATAACTTACATAACTTATATATATCATA
14316114 TCATAAGTTA
Statistics
Matches: 190, Mismatches: 16, Indels: 40
0.77 0.07 0.16
Matches are distributed among these distances:
39 32 0.17
40 1 0.01
41 1 0.01
43 3 0.02
44 3 0.02
45 14 0.07
46 11 0.06
47 24 0.13
48 39 0.21
49 1 0.01
50 1 0.01
51 30 0.16
52 23 0.12
53 5 0.03
54 2 0.01
ACGTcount: A:0.45, C:0.20, G:0.01, T:0.34
Consensus pattern (48 bp):
TACATAACTCACATAACTTACATAACTTATATATATCATAACTCAACT
Found at i:14315944 original size:39 final size:39
Alignment explanation
Indices: 14315896--14315993 Score: 160
Period size: 39 Copynumber: 2.5 Consensus size: 39
14315886 CAACTTACAT
* *
14315896 AACTCACATAACTTACATAACTTTTATATACCATAACTC
1 AACTTACATAACTTACATAACTTATATATACCATAACTC
* *
14315935 AACTTACATAACTCACATAACTTATATATATCATAACTC
1 AACTTACATAACTTACATAACTTATATATACCATAACTC
14315974 AACTTACATAACTTACATAA
1 AACTTACATAACTTACATAA
14315994 TACATAAATA
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 54 1.00
ACGTcount: A:0.44, C:0.23, G:0.00, T:0.33
Consensus pattern (39 bp):
AACTTACATAACTTACATAACTTATATATACCATAACTC
Found at i:14316000 original size:30 final size:30
Alignment explanation
Indices: 14315944--14316000 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
14315934 CAACTTACAT
*
14315944 AACTCACATAACTTATATATATCATAACTC
1 AACTCACATAACTTACATATATCATAACTC
*
14315974 AACTTACATAACTTACATA-ATACATAA
1 AACTCACATAACTTACATATAT-CATAA
14316001 ATATATATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 2 0.08
30 22 0.92
ACGTcount: A:0.47, C:0.21, G:0.00, T:0.32
Consensus pattern (30 bp):
AACTCACATAACTTACATATATCATAACTC
Found at i:14316077 original size:99 final size:102
Alignment explanation
Indices: 14315935--14316128 Score: 299
Period size: 99 Copynumber: 1.9 Consensus size: 102
14315925 ACCATAACTC
14315935 AACTTACATAACTCACATAACTTATATATATCATAACTCAACTTACATAACTTACATAATACAT-
1 AACTTACATAACTCACATAACTTATATATATCATAACTCAACTTACATAACTTACATAATACATA
14315999 AA-ATATATATCATATCAT-AGCTTACATAACTCACAT
66 AATATATATATCATATCATAAG-TTACATAACTCACAT
* * * *
14316035 AACTTACATAACTTA-ATAACTTATGTATATCATATCAT-AACTTACATAACTTGCATAATACAT
1 AACTTACATAACTCACATAACTTATATATATCATAAC-TCAACTTACATAACTTACATAATACAT
14316098 AAATATATATATCATATCATAAGTTACATAA
65 AAATATATATATCATATCATAAGTTACATAA
14316129 TTTAATTATA
Statistics
Matches: 86, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
99 43 0.50
100 17 0.20
101 24 0.28
102 2 0.02
ACGTcount: A:0.45, C:0.18, G:0.02, T:0.35
Consensus pattern (102 bp):
AACTTACATAACTCACATAACTTATATATATCATAACTCAACTTACATAACTTACATAATACATA
AATATATATATCATATCATAAGTTACATAACTCACAT
Found at i:14316125 original size:45 final size:46
Alignment explanation
Indices: 14315935--14316128 Score: 196
Period size: 47 Copynumber: 4.0 Consensus size: 46
14315925 ACCATAACTC
* *
14315935 AACTTACATAACTCACATAACTTATATATATCATAAC-TCAACTTACAT
1 AACTTACATAA-T-ACATAACATATATATATCATATCAT-AACTTACAT
* *
14315983 AACTTACATAATACATAAATATATATCATATCATAGCTTACATAACTCACAT
1 AACTTACATAATACAT-AACATATAT-ATATCATA---T-CATAACTTACAT
* *
14316035 AACTTACATAACTTA-ATAACTTATGTATATCATATCATAACTTACAT
1 AACTTACATAA--TACATAACATATATATATCATATCATAACTTACAT
* *
14316082 AACTTGCATAATACATAA-ATATATATATCATATCATAAGTTACAT
1 AACTTACATAATACATAACATATATATATCATATCATAACTTACAT
14316127 AA
1 AA
14316129 TTTAATTATA
Statistics
Matches: 124, Mismatches: 12, Indels: 23
0.78 0.08 0.14
Matches are distributed among these distances:
45 28 0.23
46 8 0.06
47 29 0.23
48 20 0.16
51 8 0.06
52 26 0.21
53 3 0.02
54 2 0.02
ACGTcount: A:0.45, C:0.18, G:0.02, T:0.35
Consensus pattern (46 bp):
AACTTACATAATACATAACATATATATATCATATCATAACTTACAT
Found at i:14318926 original size:21 final size:21
Alignment explanation
Indices: 14318902--14318958 Score: 91
Period size: 21 Copynumber: 2.8 Consensus size: 21
14318892 CTACAATTTA
*
14318902 AAGCAGAGGCAGCAGCGAGGG
1 AAGCAGAGGCAGCAGCAAGGG
14318923 AAGCAGAGGCAGCAGCAAGGG
1 AAGCAGAGGCAGCAGCAAGGG
14318944 AAGCAGA-GCAG-AGCA
1 AAGCAGAGGCAGCAGCA
14318959 GAAAGTACGA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
19 4 0.11
20 4 0.11
21 27 0.77
ACGTcount: A:0.39, C:0.19, G:0.42, T:0.00
Consensus pattern (21 bp):
AAGCAGAGGCAGCAGCAAGGG
Found at i:14319305 original size:43 final size:43
Alignment explanation
Indices: 14319241--14319390 Score: 151
Period size: 43 Copynumber: 3.5 Consensus size: 43
14319231 CGTTGTTAGT
* *
14319241 AAAGCGCCGCTAAAGAACATGACCTTTAGCAGCGTTTCTAATA
1 AAAGCGCCGCTAAAGATCATGACCTTTAGCAGCATTTCTAATA
* * * *
14319284 AAAGCGTCGCTAAAGGTCATGACCTTTAGCAGCATTTGTGATA
1 AAAGCGCCGCTAAAGATCATGACCTTTAGCAGCATTTCTAATA
* * ** * *
14319327 AAAGCACCGCTAAAGTTCATGTTCTTTAACGATG-TTTTCT-ATA
1 AAAGCGCCGCTAAAGATCATGACCTTTAGC-A-GCATTTCTAATA
*
14319370 AAAGCACCGCTAAAGATCATG
1 AAAGCGCCGCTAAAGATCATG
14319391 TTCTTTAGTG
Statistics
Matches: 90, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
43 84 0.93
44 5 0.06
45 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (43 bp):
AAAGCGCCGCTAAAGATCATGACCTTTAGCAGCATTTCTAATA
Found at i:14320701 original size:58 final size:56
Alignment explanation
Indices: 14320639--14320781 Score: 130
Period size: 58 Copynumber: 2.5 Consensus size: 56
14320629 ATTTTGCTAG
** *
14320639 ATTTAATATTAAATT-TTAAA-TTAATTTAATGTTTATCTTATAGATAAATA-TACTATTA
1 ATTTAATATTAAATTATTAAATTTAACCTAATATTTATC-T-T-GATAAATATTA-TA-TA
**
14320697 ATTTAATAATATTTATTATTAAATTTAACCTAATATTTATCTTGATAAATATTATATA
1 ATTTAAT-AT-TAAATTATTAAATTTAACCTAATATTTATCTTGATAAATATTATATA
* *
14320755 ATTTAATATTAAAGTGATTAAGTTTAA
1 ATTTAATATTAAA-TTATTAAATTTAA
14320782 TTATAATTGA
Statistics
Matches: 70, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
56 2 0.03
57 13 0.19
58 16 0.23
59 12 0.17
60 7 0.10
61 6 0.09
62 14 0.20
ACGTcount: A:0.43, C:0.03, G:0.04, T:0.49
Consensus pattern (56 bp):
ATTTAATATTAAATTATTAAATTTAACCTAATATTTATCTTGATAAATATTATATA
Found at i:14320717 original size:21 final size:23
Alignment explanation
Indices: 14320692--14320736 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
14320682 ATAAATATAC
14320692 TATT-AATTTAA-TAATATTTAT
1 TATTAAATTTAACTAATATTTAT
14320713 TATTAAATTTAACCTAATATTTAT
1 TATTAAATTTAA-CTAATATTTAT
14320737 CTTGATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 4 0.19
22 7 0.33
24 10 0.48
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.53
Consensus pattern (23 bp):
TATTAAATTTAACTAATATTTAT
Found at i:14322516 original size:18 final size:18
Alignment explanation
Indices: 14322493--14322530 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
14322483 TCATGTTAAA
14322493 ATTTGATTATGAAATTCT
1 ATTTGATTATGAAATTCT
14322511 ATTTGATTATGAAATTCT
1 ATTTGATTATGAAATTCT
14322529 AT
1 AT
14322531 CGTTTAGATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.34, C:0.05, G:0.11, T:0.50
Consensus pattern (18 bp):
ATTTGATTATGAAATTCT
Found at i:14323087 original size:16 final size:16
Alignment explanation
Indices: 14323066--14323100 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
14323056 TAGTAATTTT
14323066 AATGTTAAAG-GACTAA
1 AATGTTAAAGTGA-TAA
14323082 AATGTTAAAGTGATAA
1 AATGTTAAAGTGATAA
14323098 AAT
1 AAT
14323101 TACAAGGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.51, C:0.03, G:0.17, T:0.29
Consensus pattern (16 bp):
AATGTTAAAGTGATAA
Found at i:14323776 original size:45 final size:45
Alignment explanation
Indices: 14323681--14323782 Score: 116
Period size: 45 Copynumber: 2.3 Consensus size: 45
14323671 AAAGAAACGG
* * * *
14323681 ATAAGACCATAGTTGAAAGACACTATGGCACTATACCAGAACTAA
1 ATAAGACCATAGTTGAAAGAAACTACGACACTATACCAGAAATAA
** *
14323726 ATAAGACCATAGTTGAAAGAAACTACGACA-TCATACTGGAAATGA
1 ATAAGACCATAGTTGAAAGAAACTACGACACT-ATACCAGAAATAA
*
14323771 GTAAGACCATAG
1 ATAAGACCATAG
14323783 CTAAAAGATG
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 1 0.02
45 47 0.98
ACGTcount: A:0.45, C:0.18, G:0.18, T:0.20
Consensus pattern (45 bp):
ATAAGACCATAGTTGAAAGAAACTACGACACTATACCAGAAATAA
Found at i:14323835 original size:90 final size:90
Alignment explanation
Indices: 14323727--14323925 Score: 229
Period size: 90 Copynumber: 2.2 Consensus size: 90
14323717 CAGAACTAAA
* * * * * *
14323727 TAAGACCATAGTTGAAAGAAACTACGACATCATACTGGAAATGAGTAAGACCATAGCTAAAAGAT
1 TAAGACCAAAGTTGAAAGAAACTAAGACATCACAATGGAAACGAGTAAGACCATAGCTAAAAGAC
14323792 GTTATGGCATCACGATTTTAACGAG
66 GTTATGGCATCACGATTTTAACGAG
*** * *** *
14323817 TAAGACCAAAGCTT-AAAGACGTTAAGGCATCACAATTTTAACGAGTAAGACCATAGCTGAAAGA
1 TAAGACCAAAG-TTGAAAGAAACTAAGACATCACAATGGAAACGAGTAAGACCATAGCTAAAAGA
*
14323881 CGTTATGGCATCACGATTTTAATGAG
65 CGTTATGGCATCACGATTTTAACGAG
* *
14323907 TAAGACTATAGTTGAAAGA
1 TAAGACCAAAGTTGAAAGA
14323926 CGTTATGGCA
Statistics
Matches: 90, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
89 2 0.02
90 86 0.96
91 2 0.02
ACGTcount: A:0.41, C:0.15, G:0.20, T:0.24
Consensus pattern (90 bp):
TAAGACCAAAGTTGAAAGAAACTAAGACATCACAATGGAAACGAGTAAGACCATAGCTAAAAGAC
GTTATGGCATCACGATTTTAACGAG
Found at i:14323986 original size:45 final size:45
Alignment explanation
Indices: 14323766--14323983 Score: 310
Period size: 45 Copynumber: 4.8 Consensus size: 45
14323756 TCATACTGGA
* *
14323766 AATGAGTAAGACCATAGCTAAAAGATGTTATGGCATCACGATTTT
1 AATGAGTAAGACCATAGCTGAAAGACGTTATGGCATCACGATTTT
* * * * *
14323811 AACGAGTAAGACCAAAGCTTAAAGACGTTAAGGCATCACAATTTT
1 AATGAGTAAGACCATAGCTGAAAGACGTTATGGCATCACGATTTT
*
14323856 AACGAGTAAGACCATAGCTGAAAGACGTTATGGCATCACGATTTT
1 AATGAGTAAGACCATAGCTGAAAGACGTTATGGCATCACGATTTT
* * * *
14323901 AATGAGTAAGACTATAGTTGAAAGACGTTATGGCATCATGATTCT
1 AATGAGTAAGACCATAGCTGAAAGACGTTATGGCATCACGATTTT
* *
14323946 AATGAGTAAGACCATAGCTGAAAGACATTATGTCATCA
1 AATGAGTAAGACCATAGCTGAAAGACGTTATGGCATCA
14323984 TGAATCAGGG
Statistics
Matches: 154, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 154 1.00
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.26
Consensus pattern (45 bp):
AATGAGTAAGACCATAGCTGAAAGACGTTATGGCATCACGATTTT
Found at i:14324012 original size:90 final size:90
Alignment explanation
Indices: 14323769--14324013 Score: 235
Period size: 90 Copynumber: 2.7 Consensus size: 90
14323759 TACTGGAAAT
* ** * * * * *
14323769 GAGTAAGACCATAGCTAAAAGATGTTATGGCATCACGATTTTAACGAGTAAGACCAAAGCTT-AA
1 GAGTAAGACCATAGCTGAAAGACATTATGGCATCACGATATCAAGGAATAAGACCATAG-TTGAA
*
14323833 AGACGTTAAGGCATCACAATTTTAAC
65 AGACGTTAAGGCATCACAATTCTAAC
* * * * * *
14323859 GAGTAAGACCATAGCTGAAAGACGTTATGGCATCACGATTTTAATGAGTAAGACTATAGTTGAAA
1 GAGTAAGACCATAGCTGAAAGACATTATGGCATCACGATATCAAGGAATAAGACCATAGTTGAAA
* ** *
14323924 GACGTTATGGCATCATGATTCTAAT
66 GACGTTAAGGCATCACAATTCTAAC
* * * *
14323949 GAGTAAGACCATAGCTGAAAGACATTATGTCATCATGA-ATCAGGGGAATAATACCAT-GATTGA
1 GAGTAAGACCATAGCTGAAAGACATTATGGCATCACGATATCA-AGGAATAAGACCATAG-TTGA
14324012 AA
64 AA
14324014 TACACTATGG
Statistics
Matches: 132, Mismatches: 20, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
89 5 0.04
90 127 0.96
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.26
Consensus pattern (90 bp):
GAGTAAGACCATAGCTGAAAGACATTATGGCATCACGATATCAAGGAATAAGACCATAGTTGAAA
GACGTTAAGGCATCACAATTCTAAC
Found at i:14325726 original size:21 final size:21
Alignment explanation
Indices: 14325700--14325741 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
14325690 TTTTATGATG
14325700 ATTAGAAACATTTGTACATGA
1 ATTAGAAACATTTGTACATGA
14325721 ATTAGAAACATTTGTACATGA
1 ATTAGAAACATTTGTACATGA
14325742 TTTGAGGGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (21 bp):
ATTAGAAACATTTGTACATGA
Found at i:14326455 original size:8 final size:8
Alignment explanation
Indices: 14326442--14326471 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
14326432 TCACCTTTAT
14326442 TTGTGACA
1 TTGTGACA
14326450 TTGTGACA
1 TTGTGACA
14326458 TTGTGACA
1 TTGTGACA
14326466 TTGTGA
1 TTGTGA
14326472 GCATATAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.23, C:0.10, G:0.27, T:0.40
Consensus pattern (8 bp):
TTGTGACA
Found at i:14343571 original size:26 final size:26
Alignment explanation
Indices: 14343535--14343596 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
14343525 ACAAATTTTC
*
14343535 TCAAAATTTTACTAAGGGCAGAATCG
1 TCAAAATTTTACTAAGGGCAAAATCG
* *
14343561 TCAAAATTTTACTAAGGGTAAAATTG
1 TCAAAATTTTACTAAGGGCAAAATCG
*
14343587 TTAAAATTTT
1 TCAAAATTTT
14343597 GCTGGGAGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (26 bp):
TCAAAATTTTACTAAGGGCAAAATCG
Found at i:14352029 original size:25 final size:26
Alignment explanation
Indices: 14351990--14352057 Score: 88
Period size: 25 Copynumber: 2.7 Consensus size: 26
14351980 TTCTTGAAAT
14351990 TTTACTAGGGG-AAAATAGTCAAA-A
1 TTTACTAGGGGTAAAATAGTCAAAGA
* *
14352014 TTTACTAGGGGTAAAATTGTCAAAGT
1 TTTACTAGGGGTAAAATAGTCAAAGA
*
14352040 TTTGCT-GGGGTAAAATAG
1 TTTACTAGGGGTAAAATAG
14352058 AAATGAGATA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
24 11 0.29
25 22 0.58
26 5 0.13
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (26 bp):
TTTACTAGGGGTAAAATAGTCAAAGA
Found at i:14352561 original size:62 final size:62
Alignment explanation
Indices: 14352488--14352612 Score: 214
Period size: 62 Copynumber: 2.0 Consensus size: 62
14352478 GAAGATAGAA
14352488 TTTTTGCTTTCACCCCAAAAGGAGAGAAACCTTTTTCTAGTTTGGTGTTTCAATCAATTGGT
1 TTTTTGCTTTCACCCCAAAAGGAGAGAAACCTTTTTCTAGTTTGGTGTTTCAATCAATTGGT
* * * *
14352550 TTTTTGTTTTCACCCCAAAATGAGAGAAACTTTTTTCTAGTTTGGTGTTTCGATCAATTGGT
1 TTTTTGCTTTCACCCCAAAAGGAGAGAAACCTTTTTCTAGTTTGGTGTTTCAATCAATTGGT
14352612 T
1 T
14352613 CGAGCCCACA
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.23, C:0.16, G:0.18, T:0.43
Consensus pattern (62 bp):
TTTTTGCTTTCACCCCAAAAGGAGAGAAACCTTTTTCTAGTTTGGTGTTTCAATCAATTGGT
Found at i:14353063 original size:5 final size:5
Alignment explanation
Indices: 14353053--14353083 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
14353043 TGATCAAGTA
14353053 AAATT AAATT AAATT -AATT AAATT AAATT AA
1 AAATT AAATT AAATT AAATT AAATT AAATT AA
14353084 TTTGATATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.16
5 21 0.84
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
AAATT
Found at i:14353073 original size:14 final size:14
Alignment explanation
Indices: 14353054--14353085 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
14353044 GATCAAGTAA
14353054 AATTAAATTAAATT
1 AATTAAATTAAATT
14353068 AATTAAATTAAATT
1 AATTAAATTAAATT
14353082 AATT
1 AATT
14353086 TGATATTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
AATTAAATTAAATT
Found at i:14354316 original size:135 final size:135
Alignment explanation
Indices: 14354074--14354344 Score: 542
Period size: 135 Copynumber: 2.0 Consensus size: 135
14354064 CAACACAAAG
14354074 CACGTGAGTTACATACTCATGGTTAGTGACTAACTCAGGATTTAGATAAATCACACCATAAATAT
1 CACGTGAGTTACATACTCATGGTTAGTGACTAACTCAGGATTTAGATAAATCACACCATAAATAT
14354139 CACAAGTGAATTAATTCACAAATAGATTCAGAATTAATTTATCTTTGGTCCAATTCCATTTATCA
66 CACAAGTGAATTAATTCACAAATAGATTCAGAATTAATTTATCTTTGGTCCAATTCCATTTATCA
14354204 TTCTT
131 TTCTT
14354209 CACGTGAGTTACATACTCATGGTTAGTGACTAACTCAGGATTTAGATAAATCACACCATAAATAT
1 CACGTGAGTTACATACTCATGGTTAGTGACTAACTCAGGATTTAGATAAATCACACCATAAATAT
14354274 CACAAGTGAATTAATTCACAAATAGATTCAGAATTAATTTATCTTTGGTCCAATTCCATTTATCA
66 CACAAGTGAATTAATTCACAAATAGATTCAGAATTAATTTATCTTTGGTCCAATTCCATTTATCA
14354339 TTCTT
131 TTCTT
14354344 C
1 C
14354345 TAATGAATAC
Statistics
Matches: 136, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
135 136 1.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (135 bp):
CACGTGAGTTACATACTCATGGTTAGTGACTAACTCAGGATTTAGATAAATCACACCATAAATAT
CACAAGTGAATTAATTCACAAATAGATTCAGAATTAATTTATCTTTGGTCCAATTCCATTTATCA
TTCTT
Found at i:14361819 original size:14 final size:13
Alignment explanation
Indices: 14361795--14361847 Score: 52
Period size: 14 Copynumber: 3.7 Consensus size: 13
14361785 TTTTATGAAT
14361795 TAAAAAATAATTA
1 TAAAAAATAATTA
14361808 TAAAAGAATAATTA
1 TAAAA-AATAATTA
*
14361822 TATTAAAAATAAATCA
1 TA--AAAAAT-AATTA
14361838 TATAAAAATA
1 TA-AAAAATA
14361848 TTTAATATGC
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
13 5 0.14
14 11 0.31
15 10 0.29
16 9 0.26
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (13 bp):
TAAAAAATAATTA
Found at i:14361845 original size:16 final size:14
Alignment explanation
Indices: 14361795--14361845 Score: 50
Period size: 16 Copynumber: 3.4 Consensus size: 14
14361785 TTTTATGAAT
14361795 TAAAAAATAAT-TA
1 TAAAAAATAATATA
14361808 TAAAAGAATAATTATA
1 TAAAA-AATAA-TATA
*
14361824 TTAAAAATAAATCATA
1 TAAAAAAT-AAT-ATA
14361840 TAAAAA
1 TAAAAA
14361846 TATTTAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
13 5 0.16
14 5 0.16
15 5 0.16
16 16 0.52
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (14 bp):
TAAAAAATAATATA
Found at i:14365628 original size:13 final size:13
Alignment explanation
Indices: 14365610--14365636 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14365600 CTTTTCTATT
14365610 ATTCAATGGGTTA
1 ATTCAATGGGTTA
14365623 ATTCAATGGGTTA
1 ATTCAATGGGTTA
14365636 A
1 A
14365637 CGTCTCAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.37
Consensus pattern (13 bp):
ATTCAATGGGTTA
Found at i:14375744 original size:13 final size:13
Alignment explanation
Indices: 14375726--14375750 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14375716 AATCTACTAT
14375726 TTCTGTATCTGTA
1 TTCTGTATCTGTA
14375739 TTCTGTATCTGT
1 TTCTGTATCTGT
14375751 GTTTGGGATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.16, G:0.16, T:0.56
Consensus pattern (13 bp):
TTCTGTATCTGTA
Found at i:14376277 original size:13 final size:14
Alignment explanation
Indices: 14376250--14376278 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
14376240 TGGGACTTTC
14376250 TTAACTGTATGGTT
1 TTAACTGTATGGTT
14376264 TTAACTGT-TGGTT
1 TTAACTGTATGGTT
14376277 TT
1 TT
14376279 GGTTTGATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.17, C:0.07, G:0.21, T:0.55
Consensus pattern (14 bp):
TTAACTGTATGGTT
Found at i:14377242 original size:15 final size:15
Alignment explanation
Indices: 14377222--14377274 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
14377212 CACCTTAAAC
14377222 ACAAATATAGTCTTT
1 ACAAATATAGTCTTT
* * * **
14377237 ACAAATAAAAATATAA
1 ACAAAT-ATAGTCTTT
14377253 ACAAATATAGTCTTT
1 ACAAATATAGTCTTT
14377268 ACAAATA
1 ACAAATA
14377275 AAAATATAAT
Statistics
Matches: 27, Mismatches: 10, Indels: 2
0.69 0.26 0.05
Matches are distributed among these distances:
15 17 0.63
16 10 0.37
ACGTcount: A:0.55, C:0.11, G:0.04, T:0.30
Consensus pattern (15 bp):
ACAAATATAGTCTTT
Found at i:14377258 original size:31 final size:31
Alignment explanation
Indices: 14377222--14377283 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
14377212 CACCTTAAAC
14377222 ACAAATATAGTCTTTACAAATAAAAATATAA
1 ACAAATATAGTCTTTACAAATAAAAATATAA
14377253 ACAAATATAGTCTTTACAAATAAAAATATAA
1 ACAAATATAGTCTTTACAAATAAAAATATAA
14377284 TCTTAAATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.58, C:0.10, G:0.03, T:0.29
Consensus pattern (31 bp):
ACAAATATAGTCTTTACAAATAAAAATATAA
Found at i:14377305 original size:13 final size:14
Alignment explanation
Indices: 14377282--14377310 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
14377272 ATAAAAATAT
14377282 AATCTTAAATATTA
1 AATCTTAAATATTA
14377296 AATC-TAAATATTA
1 AATCTTAAATATTA
14377309 AA
1 AA
14377311 AATAATTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (14 bp):
AATCTTAAATATTA
Found at i:14379329 original size:6 final size:6
Alignment explanation
Indices: 14379320--14379357 Score: 76
Period size: 6 Copynumber: 6.3 Consensus size: 6
14379310 CTTTATCATT
14379320 ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA AT
1 ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA AT
14379358 CGATTTAAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (6 bp):
ATTTTA
Found at i:14391349 original size:26 final size:26
Alignment explanation
Indices: 14391320--14391401 Score: 94
Period size: 26 Copynumber: 3.2 Consensus size: 26
14391310 ATACCGCAGT
*
14391320 TCTTTGTGAGCTT-CTTATTATATGGC
1 TCTTTGTGAGCTTCCTAATTA-ATGGC
* * **
14391346 TCTTCGTGAACTTCCTGGTTAATGGC
1 TCTTTGTGAGCTTCCTAATTAATGGC
*
14391372 TCTTTCTGAGCTTCCTAATTAATGGC
1 TCTTTGTGAGCTTCCTAATTAATGGC
14391398 TCTT
1 TCTT
14391402 CAGAGTTTCC
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
26 41 0.89
27 5 0.11
ACGTcount: A:0.16, C:0.21, G:0.18, T:0.45
Consensus pattern (26 bp):
TCTTTGTGAGCTTCCTAATTAATGGC
Found at i:14392313 original size:8 final size:8
Alignment explanation
Indices: 14392300--14392327 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
14392290 AGTTAAGTTC
14392300 GAATACAT
1 GAATACAT
14392308 GAATACAT
1 GAATACAT
14392316 GAATACAT
1 GAATACAT
14392324 GAAT
1 GAAT
14392328 GTATTCAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.11, G:0.14, T:0.25
Consensus pattern (8 bp):
GAATACAT
Found at i:14393881 original size:27 final size:27
Alignment explanation
Indices: 14393842--14393910 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 27
14393832 TGTAATCCTT
** * **
14393842 GTGTTTATTGTCCCAACGATCTACTTC
1 GTGTTTAACGTCCCAACGAACTACCCC
14393869 GTGTTTAACGTCCCAACGAACTACCCC
1 GTGTTTAACGTCCCAACGAACTACCCC
14393896 GTGTTT-ACTGTCCCA
1 GTGTTTAAC-GTCCCA
14393911 GTAGACTACC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
26 2 0.06
27 34 0.94
ACGTcount: A:0.20, C:0.30, G:0.16, T:0.33
Consensus pattern (27 bp):
GTGTTTAACGTCCCAACGAACTACCCC
Found at i:14400746 original size:2 final size:2
Alignment explanation
Indices: 14400739--14400772 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
14400729 GTATACTTTC
* *
14400739 AT AT AT AT AT AT AT AT GT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14400773 TATTGATTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14400754 original size:12 final size:12
Alignment explanation
Indices: 14400724--14400772 Score: 62
Period size: 12 Copynumber: 3.9 Consensus size: 12
14400714 TAGTTTTCTT
*
14400724 TATATGTATACTT
1 TATATGTATA-TA
*
14400737 TCATATATATATA
1 T-ATATGTATATA
14400750 TATATGTATATA
1 TATATGTATATA
14400762 TATATGTATAT
1 TATATGTATAT
14400773 TATTGATTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
12 21 0.66
13 3 0.09
14 8 0.25
ACGTcount: A:0.39, C:0.04, G:0.06, T:0.51
Consensus pattern (12 bp):
TATATGTATATA
Found at i:14409749 original size:14 final size:15
Alignment explanation
Indices: 14409721--14409761 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
14409711 ATAAAAAATG
14409721 AAAGAAGGATAAGAA
1 AAAGAAGGATAAGAA
*
14409736 AAAG-AGGATGAGAA
1 AAAGAAGGATAAGAA
14409750 AGAA-AAGGATAA
1 A-AAGAAGGATAA
14409762 AATACACTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 10 0.45
15 12 0.55
ACGTcount: A:0.63, C:0.00, G:0.29, T:0.07
Consensus pattern (15 bp):
AAAGAAGGATAAGAA
Found at i:14422527 original size:42 final size:42
Alignment explanation
Indices: 14422439--14422538 Score: 105
Period size: 42 Copynumber: 2.4 Consensus size: 42
14422429 ACGGGCATGT
* * ** *
14422439 GACACGACCGTGTGACCCTACTTAGAGAGTTACACGGGTTGG
1 GACACGGCCGTGTGTCCCTACTTAGAGAGTTACACGGCCTGA
* *
14422481 GACACGGCCGTGTGTCCCTAGTTCGA-AGGTTACACGGCCTGA
1 GACACGGCCGTGTGTCCCTACTTAGAGA-GTTACACGGCCTGA
14422523 GACACAGG-CGTGTGTC
1 GACAC-GGCCGTGTGTC
14422539 TCAGCCGTGT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
41 1 0.02
42 46 0.94
43 2 0.04
ACGTcount: A:0.21, C:0.26, G:0.32, T:0.21
Consensus pattern (42 bp):
GACACGGCCGTGTGTCCCTACTTAGAGAGTTACACGGCCTGA
Found at i:14425458 original size:17 final size:18
Alignment explanation
Indices: 14425425--14425458 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14425415 TATTAACACT
*
14425425 TAAAATAATATTATATAG
1 TAAAATAATAGTATATAG
14425443 TAAAATAAT-GTATATA
1 TAAAATAATAGTATATA
14425459 CAAAAAATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (18 bp):
TAAAATAATAGTATATAG
Found at i:14427071 original size:50 final size:50
Alignment explanation
Indices: 14427017--14427360 Score: 204
Period size: 50 Copynumber: 6.9 Consensus size: 50
14427007 TGCAATGTCG
* * *
14427017 GGGAAGCAAGATTCATCGATGTGGCTTTAATCTGTTCCACTGCACCACCA
1 GGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCAACGCCA
* * * * * * ** * *
14427067 GGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCA
1 GGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCAACGCCA
* * * * * * * * *
14427117 GGTAGGCCAGACTCACCGCTATGGCTTTAATCTGTTCCACTACACCGCCT
1 GGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCAACGCCA
* * * * * * * ** * ***
14427167 GGGAGGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTTG
1 GGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCAACGCCA
* *
14427217 GGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCATCGCCT
1 GGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCAACGCCA
* * * * * * ** * **
14427267 GGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTGA
1 GGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCAACGCCA
* * * *
14427317 GGGAGGCCAGATTCACC-ATTGTGGCTTTAATCTGCTCTACTGCA
1 GGGAAGCAAGATTCACCGA-TGTGGCTTTAATCTGTTCCACTGCA
14427361 CTGGCTGAGA
Statistics
Matches: 206, Mismatches: 87, Indels: 2
0.70 0.29 0.01
Matches are distributed among these distances:
50 206 1.00
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.32
Consensus pattern (50 bp):
GGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCAACGCCA
Found at i:14427176 original size:100 final size:100
Alignment explanation
Indices: 14426999--14427651 Score: 649
Period size: 100 Copynumber: 6.6 Consensus size: 100
14426989 AACTTCAATA
* * *
14426999 TTTTTAACTGCAATGTCGGGGAAGCAAGATTCATCGATGTGGCTTTAATCTGTTCCACTGCACCA
1 TTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCG
* *
14427064 CCAGGGAAGTAAGATTCGCTGTTGTAGCTTTAATC
66 CCTGGGAGGTAAGATTCGCTGTTGTAGCTTTAATC
* * * * * * * *
14427099 TTTTTAACTGCAATGTCAGGTAGGCCAGACTCACCGCTATGGCTTTAATCTGTTCCACTACACCG
1 TTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCG
14427164 CCTGGGAGGTAAGATTCGCTGTTGTAGCTTTAATC
66 CCTGGGAGGTAAGATTCGCTGTTGTAGCTTTAATC
* * *
14427199 TTTTTAACTGCAATGTTGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCATCG
1 TTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCG
*
14427264 CCTGGGAAGTAAGATTCGCTGTTGTAGCTTTAATC
66 CCTGGGAGGTAAGATTCGCTGTTGTAGCTTTAATC
* * * * * *
14427299 TTTTTAACTGCAATGT-GAGGGAGGCCAGATTCACCATTGTGGCTTTAATCTGCTCTACTGCACT
1 TTTTTAACTGCAATGTCG-GGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACC
* * *
14427363 GGCTGAGAGAGTGAGATTCGTCACTG-TG-A-CTTTAATC
65 GCCTGGGAG-GTAAGATTCG---CTGTTGTAGCTTTAATC
* ** * * *
14427400 CTTTTAACTGCAATGTCGGAAAAGCAAGATTCACCGTTGTGGCTTTAATCTGCTCTACTGCACTG
1 TTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCG
* * * *
14427465 GCTGAGAGAGTGAGATTCATCACTG-TG-A-CTTTAATC
66 CCTGGGAG-GTAAGA-T--TCGCTGTTGTAGCTTTAATC
* * * * * **
14427501 CTTTTAACTGCAATGTCGGGAAAGCAAGA-TCACAGTTGTGGCTTTAATCTACTT-AACTGCATT
1 TTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCT-GTTCCACTGCACC
* *
14427564 GCCAGGGAGGTAAGATTCGCTGCTGTAGCTTTAA--
65 GCCTGGGAGGTAAGATTCGCTGTTGTAGCTTTAATC
* * * *
14427598 ----T--CTGTAATGTCGAGGAAGCAAGATTTACCATTGTGGCTTTAATCTGTTCC-CTGC
1 TTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGC
14427652 TCTTGCAGAT
Statistics
Matches: 477, Mismatches: 61, Indels: 39
0.83 0.11 0.07
Matches are distributed among these distances:
91 25 0.05
92 18 0.04
93 1 0.00
96 5 0.01
97 2 0.00
98 2 0.00
99 12 0.03
100 270 0.57
101 132 0.28
102 3 0.01
103 2 0.00
104 5 0.01
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.32
Consensus pattern (100 bp):
TTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCG
CCTGGGAGGTAAGATTCGCTGTTGTAGCTTTAATC
Found at i:14427399 original size:51 final size:51
Alignment explanation
Indices: 14427325--14427500 Score: 178
Period size: 51 Copynumber: 3.5 Consensus size: 51
14427315 GAGGGAGGCC
* * *
14427325 AGATTCACCATTGTGGCTTTAATCTGCTCTACTGCACTGGCTGAGAGAGTG
1 AGATTCATCACTGTGACTTTAATCTGCTCTACTGCACTGGCTGAGAGAGTG
* * * * * * **
14427376 AGATTCGTCACTGTGACTTTAATC--CTTTTAACTGCAATGTCGGA-AAAGCA
1 AGATTCATCACTGTGACTTTAATCTGC-TCT-ACTGCACTGGCTGAGAGAGTG
* ** *
14427426 AGATTCACCGTTGTGGCTTTAATCTGCTCTACTGCACTGGCTGAGAGAGTG
1 AGATTCATCACTGTGACTTTAATCTGCTCTACTGCACTGGCTGAGAGAGTG
14427477 AGATTCATCACTGTGACTTTAATC
1 AGATTCATCACTGTGACTTTAATC
14427501 CTTTTAACTG
Statistics
Matches: 93, Mismatches: 27, Indels: 10
0.72 0.21 0.08
Matches are distributed among these distances:
49 1 0.01
50 35 0.38
51 56 0.60
52 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.32
Consensus pattern (51 bp):
AGATTCATCACTGTGACTTTAATCTGCTCTACTGCACTGGCTGAGAGAGTG
Found at i:14427449 original size:50 final size:50
Alignment explanation
Indices: 14427174--14427549 Score: 176
Period size: 50 Copynumber: 7.5 Consensus size: 50
14427164 CCTGGGAGGT
* * * * * **
14427174 AAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTTGGGGAAGC
1 AAGATTCACCGTTGTGGCTTTAATCCTTTTAACTGCAATGTCGGAAAAGC
* ** * * *
14427224 AAGATTCACCGATGTGGCTTTAAT-CTGTTCCACTGC-ATCGCCTGG-GAAGT
1 AAGATTCACCGTTGTGGCTTTAATCCT-TTTAACTGCAAT-GTC-GGAAAAGC
* * * * ** *
14427274 AAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGT-GAGGGAGGC
1 AAGATTCACCGTTGTGGCTTTAATCCTTTTAACTGCAATGTCG-GAAAAGC
* * * * * * * *
14427324 CAGATTCACCATTGTGGCTTTAAT-CTGCTCT-ACTGCACTGGCTGAGAGAGT
1 AAGATTCACCGTTGTGGCTTTAATCCT--TTTAACTGCAATGTCGGA-AAAGC
* ** ** *
14427375 GAGATTCGTCACTGTGACTTTAATCCTTTTAACTGCAATGTCGGAAAAGC
1 AAGATTCACCGTTGTGGCTTTAATCCTTTTAACTGCAATGTCGGAAAAGC
* * * * * *
14427425 AAGATTCACCGTTGTGGCTTTAAT-CTGCTCT-ACTGCACTGGCTGAGAGAGT
1 AAGATTCACCGTTGTGGCTTTAATCCT--TTTAACTGCAATGTCGGA-AAAGC
* * ** * *
14427476 GAGATTCATCACTGTGACTTTAATCCTTTTAACTGCAATGTCGGGAAAGC
1 AAGATTCACCGTTGTGGCTTTAATCCTTTTAACTGCAATGTCGGAAAAGC
*
14427526 AAGA-TCACAGTTGTGGCTTTAATC
1 AAGATTCACCGTTGTGGCTTTAATC
14427550 TACTTAACTG
Statistics
Matches: 232, Mismatches: 76, Indels: 37
0.67 0.22 0.11
Matches are distributed among these distances:
48 1 0.00
49 22 0.09
50 133 0.57
51 72 0.31
52 4 0.02
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.33
Consensus pattern (50 bp):
AAGATTCACCGTTGTGGCTTTAATCCTTTTAACTGCAATGTCGGAAAAGC
Found at i:14428928 original size:19 final size:19
Alignment explanation
Indices: 14428904--14428971 Score: 73
Period size: 19 Copynumber: 3.4 Consensus size: 19
14428894 TTAGCCTCTC
14428904 CATTTTTATTTTTCTTTTT
1 CATTTTTATTTTTCTTTTT
**
14428923 CATTTTTCCTTTTCTTTTT
1 CATTTTTATTTTTCTTTTT
*
14428942 CATTTTCACTTTTTTCATTTTT
1 CATTTTTA--TTTTTC-TTTTT
14428964 CATATTTT
1 CAT-TTTT
14428972 CTGACTCAGA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
19 23 0.59
21 5 0.13
22 8 0.21
23 3 0.08
ACGTcount: A:0.12, C:0.16, G:0.00, T:0.72
Consensus pattern (19 bp):
CATTTTTATTTTTCTTTTT
Found at i:14428940 original size:25 final size:26
Alignment explanation
Indices: 14428907--14428955 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
14428897 GCCTCTCCAT
*
14428907 TTTTATTTTTCTTTTTCA-TTTTTCC
1 TTTTATTTTTCATTTTCACTTTTTCC
*
14428932 TTTTCTTTTTCATTTTCACTTTTT
1 TTTTATTTTTCATTTTCACTTTTT
14428956 TCATTTTTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (26 bp):
TTTTATTTTTCATTTTCACTTTTTCC
Found at i:14428962 original size:7 final size:7
Alignment explanation
Indices: 14428904--14428972 Score: 67
Period size: 6 Copynumber: 10.1 Consensus size: 7
14428894 TTAGCCTCTC
14428904 CATTTTT
1 CATTTTT
14428911 -ATTTTT
1 CATTTTT
14428917 C-TTTTT
1 CATTTTT
14428923 CATTTTT
1 CATTTTT
*
14428930 C-CTTTT
1 CATTTTT
14428936 C-TTTTT
1 CATTTTT
14428942 CA-TTTT
1 CATTTTT
14428948 CACTTTTTT
1 CA--TTTTT
14428957 CATTTTT
1 CATTTTT
14428964 CATATTTT
1 CAT-TTTT
14428972 C
1 C
14428973 TGACTCAGAG
Statistics
Matches: 53, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
6 28 0.53
7 14 0.26
8 5 0.09
9 6 0.11
ACGTcount: A:0.12, C:0.17, G:0.00, T:0.71
Consensus pattern (7 bp):
CATTTTT
Found at i:14430303 original size:19 final size:19
Alignment explanation
Indices: 14430279--14430316 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
14430269 CTCTAGAGGT
14430279 CACTAATGTATGAAGAATA
1 CACTAATGTATGAAGAATA
14430298 CACTAATGTATGAAGAATA
1 CACTAATGTATGAAGAATA
14430317 ATCAAGTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.11, G:0.16, T:0.26
Consensus pattern (19 bp):
CACTAATGTATGAAGAATA
Found at i:14430706 original size:17 final size:18
Alignment explanation
Indices: 14430673--14430706 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14430663 TATTAACACT
*
14430673 TAAAATAATATTATATAG
1 TAAAATAATAGTATATAG
14430691 TAAAATAAT-GTATATA
1 TAAAATAATAGTATATA
14430707 CAAAAAATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (18 bp):
TAAAATAATAGTATATAG
Found at i:14434040 original size:212 final size:203
Alignment explanation
Indices: 14433682--14434069 Score: 578
Period size: 212 Copynumber: 1.9 Consensus size: 203
14433672 TTACATAAAA
*
14433682 ATCCCAACTTTTATATTATTCTCAACCTTTTCTTTAATGACTTCCATGTTTATGTTCATTAAATT
1 ATCCCAACTTTTATATTATTCTCAACCTTTTCTTTAATGACTTCCATGTTTATGTTCACTAAATT
* *
14433747 TATTTTTAGTATGAGTAATTAAACTTTTAAGGGGATTGGTTGATGTAGACGTGGTGAGCTAATTT
66 TATTTTTAGTATGAGTAACTAAACTTTTAAGGGGATTGGTTGATGGAGACGTGGTGAGCTAATTT
*
14433812 TTGGATGAGAGACCAAATCATAATAAATTGGGCTAATTTGAATGAATACCTAGGCAAGTGAGATC
131 TTGGATGAGAGACCAAATCATAATAAATTGGACTAATTTGAATGAATACCTAGGCAAGTGAGATC
14433877 GAGAGAAG
196 GAGAGAAG
* * *
14433885 ATCCCAACTTTTATATTTTTCTCAAGCTTTTCTTTAATGGCTTCCATGTTATGTATTTTTATGTT
1 ATCCCAACTTTTATATTATTCTCAACCTTTTCTTTAATGACTTCC-----ATG----TTTATGTT
* * * * *
14433950 CACTAACTTTATTTTTAGTATGAGTAACTATACTTTTCAGGGGGTTGGTTGATGGAGATGTGGTG
57 CACTAAATTTATTTTTAGTATGAGTAACTAAACTTTTAAGGGGATTGGTTGATGGAGACGTGGTG
*
14434015 AGCTAATTTTTGGATGAGAGACCAAATCGTAATAAATTGGACTAATTTGAATGAA
122 AGCTAATTTTTGGATGAGAGACCAAATCATAATAAATTGGACTAATTTGAATGAA
14434070 CCTAAAAACT
Statistics
Matches: 163, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
203 42 0.26
208 3 0.02
212 118 0.72
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (203 bp):
ATCCCAACTTTTATATTATTCTCAACCTTTTCTTTAATGACTTCCATGTTTATGTTCACTAAATT
TATTTTTAGTATGAGTAACTAAACTTTTAAGGGGATTGGTTGATGGAGACGTGGTGAGCTAATTT
TTGGATGAGAGACCAAATCATAATAAATTGGACTAATTTGAATGAATACCTAGGCAAGTGAGATC
GAGAGAAG
Found at i:14437372 original size:13 final size:13
Alignment explanation
Indices: 14437313--14437372 Score: 52
Period size: 13 Copynumber: 4.5 Consensus size: 13
14437303 GAGAAAATGC
*
14437313 ATAATAAAATAAA
1 ATAAAAAAATAAA
*
14437326 ATAAAAGAATAAA
1 ATAAAAAAATAAA
*
14437339 TCTAGAAAATAA-AAA
1 -ATA-AAAA-AATAAA
14437354 AT-AAAAAATAAA
1 ATAAAAAAATAAA
14437366 ATAAAAA
1 ATAAAAA
14437373 TAAAAATAGG
Statistics
Matches: 37, Mismatches: 5, Indels: 10
0.71 0.10 0.19
Matches are distributed among these distances:
11 2 0.05
12 9 0.24
13 15 0.41
14 3 0.08
15 6 0.16
16 2 0.05
ACGTcount: A:0.77, C:0.02, G:0.03, T:0.18
Consensus pattern (13 bp):
ATAAAAAAATAAA
Found at i:14448669 original size:8 final size:9
Alignment explanation
Indices: 14448645--14448670 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
14448635 GAAAACTATA
14448645 GTGTTTTTG
1 GTGTTTTTG
14448654 GTGTTTTTG
1 GTGTTTTTG
14448663 GTGTTTTT
1 GTGTTTTT
14448671 TCTTGGTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (9 bp):
GTGTTTTTG
Found at i:14455012 original size:8 final size:8
Alignment explanation
Indices: 14454999--14455023 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
14454989 AAAACTAAAC
14454999 CCCGAAAA
1 CCCGAAAA
14455007 CCCGAAAA
1 CCCGAAAA
14455015 CCCGAAAA
1 CCCGAAAA
14455023 C
1 C
14455024 AAAGAACCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.40, G:0.12, T:0.00
Consensus pattern (8 bp):
CCCGAAAA
Found at i:14458159 original size:41 final size:41
Alignment explanation
Indices: 14458114--14458213 Score: 200
Period size: 41 Copynumber: 2.4 Consensus size: 41
14458104 TATGGATACT
14458114 CCACAGCTCGTGTGAGCAGCATCATGTAGCTACGTTGTGAC
1 CCACAGCTCGTGTGAGCAGCATCATGTAGCTACGTTGTGAC
14458155 CCACAGCTCGTGTGAGCAGCATCATGTAGCTACGTTGTGAC
1 CCACAGCTCGTGTGAGCAGCATCATGTAGCTACGTTGTGAC
14458196 CCACAGCTCGTGTGAGCA
1 CCACAGCTCGTGTGAGCA
14458214 TACCGATTTA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 59 1.00
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (41 bp):
CCACAGCTCGTGTGAGCAGCATCATGTAGCTACGTTGTGAC
Found at i:14458228 original size:25 final size:25
Alignment explanation
Indices: 14458198--14458291 Score: 109
Period size: 25 Copynumber: 3.8 Consensus size: 25
14458188 GTTGTGACCC
*
14458198 ACAGCTCGTGTGAGCATACCGATTT
1 ACAGCTCGTGTGAGCATACCAATTT
* *
14458223 ATAGCTCGTGAT-AGCATACCAATCT
1 ACAGCTCGTG-TGAGCATACCAATTT
* * *
14458248 ACAGCTCGAGTGAGCATACCCATTC
1 ACAGCTCGTGTGAGCATACCAATTT
*
14458273 ACAGCTCGTATGAGCATAC
1 ACAGCTCGTGTGAGCATAC
14458292 ATGTACATGA
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
24 1 0.02
25 55 0.96
26 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (25 bp):
ACAGCTCGTGTGAGCATACCAATTT
Found at i:14460964 original size:69 final size:69
Alignment explanation
Indices: 14460822--14460966 Score: 152
Period size: 69 Copynumber: 2.1 Consensus size: 69
14460812 TTAATCACTT
* * * *
14460822 TAATATTAAATTAATATAATACTTATCAAGATAAATATTAGATTAAATTTAATATTAAGATAATC
1 TAATATTAAATTAATAAAATACTTATCAAGATAAATATCAAATTAAATTTAATACTAAGATAATC
***
14460887 ACTT
66 AAAA
* *
14460891 TAATATTAAATTAATAAAATAC-TATCAAGCTAAGTATCAAATTAAA-TTACATACTAA-ATCTA
1 TAATATTAAATTAATAAAATACTTATCAAGATAAATATCAAATTAAATTTA-ATACTAAGA--TA
*
14460953 ATTAAAA
63 ATCAAAA
14460960 TAATATT
1 TAATATT
14460967 TTTATAGGAA
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
67 4 0.06
68 26 0.41
69 33 0.52
ACGTcount: A:0.51, C:0.08, G:0.03, T:0.38
Consensus pattern (69 bp):
TAATATTAAATTAATAAAATACTTATCAAGATAAATATCAAATTAAATTTAATACTAAGATAATC
AAAA
Found at i:14461396 original size:19 final size:19
Alignment explanation
Indices: 14461358--14461397 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
14461348 AAAATATCAT
* *
14461358 ATTAATTTTAATTAATTTG
1 ATTAATTTAAATTAACTTG
*
14461377 ATTAATTTAAATTTACTTG
1 ATTAATTTAAATTAACTTG
14461396 AT
1 AT
14461398 CAAAATTAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.55
Consensus pattern (19 bp):
ATTAATTTAAATTAACTTG
Found at i:14462777 original size:61 final size:61
Alignment explanation
Indices: 14462698--14462817 Score: 170
Period size: 61 Copynumber: 2.0 Consensus size: 61
14462688 TAAACTTAAA
* * *
14462698 ATTAAATTTAATATAATATTTATCTTGATAGTATTTTATTAACTCT-ATATTAATGTGAGAT
1 ATTAAATTTAATATAATATTTATCTTAATAATATTTTATTAA-TCTAATATTAATATGAGAT
* * *
14462759 ATTAAATTTGATTTAATATTTATCTTAATAATATTTTATTAATTTAATATTAATATGAG
1 ATTAAATTTAATATAATATTTATCTTAATAATATTTTATTAATCTAATATTAATATGAG
14462818 TAATTTCAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
60 2 0.04
61 50 0.96
ACGTcount: A:0.39, C:0.03, G:0.07, T:0.51
Consensus pattern (61 bp):
ATTAAATTTAATATAATATTTATCTTAATAATATTTTATTAATCTAATATTAATATGAGAT
Found at i:14462806 original size:16 final size:17
Alignment explanation
Indices: 14462769--14462814 Score: 53
Period size: 15 Copynumber: 2.9 Consensus size: 17
14462759 ATTAAATTTG
*
14462769 ATTTAATATTTATCTTA
1 ATTTAATATTTATATTA
14462786 A--TAATATTT-TATTA
1 ATTTAATATTTATATTA
*
14462800 ATTTAATATTAATAT
1 ATTTAATATTTATAT
14462815 GAGTAATTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
14 5 0.21
15 8 0.33
16 7 0.29
17 4 0.17
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (17 bp):
ATTTAATATTTATATTA
Found at i:14464596 original size:28 final size:28
Alignment explanation
Indices: 14464561--14464647 Score: 108
Period size: 28 Copynumber: 3.2 Consensus size: 28
14464551 CAGTATCAGT
*
14464561 ACAGTGAGGGCC-TAGCCCGATACAATA
1 ACAGTGAGGGCCTTAGCCCAATACAATA
*
14464588 ACATGTGA--GCCTTATCCCAATACAATA
1 ACA-GTGAGGGCCTTAGCCCAATACAATA
* *
14464615 ATAGTGTGGGCCTTAGCCCAATACAATA
1 ACAGTGAGGGCCTTAGCCCAATACAATA
14464643 ACAGT
1 ACAGT
14464648 ACATTGCCAT
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
26 6 0.12
27 18 0.36
28 26 0.52
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.22
Consensus pattern (28 bp):
ACAGTGAGGGCCTTAGCCCAATACAATA
Found at i:14464779 original size:26 final size:26
Alignment explanation
Indices: 14464750--14464804 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
14464740 AACACACCAA
*
14464750 TATCGCAGCAAAGCTGCCAGTAATAG
1 TATCGCAGCAAAGCTGCCAATAATAG
*
14464776 TATCGCAGCGAAGCTGCCAATAATAG
1 TATCGCAGCAAAGCTGCCAATAATAG
14464802 TAT
1 TAT
14464805 ATGTGGCAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAATAATAG
Found at i:14465019 original size:27 final size:27
Alignment explanation
Indices: 14464965--14465056 Score: 85
Period size: 27 Copynumber: 3.4 Consensus size: 27
14464955 ACATAAGGCC
* * ** *
14464965 ATAACGGTCATTTCATCTCCTGGAGGT
1 ATAACAGTCATTTTATCTTATGGGGGT
14464992 ATAACAGTCATTTTATCTTATGGGGGT
1 ATAACAGTCATTTTATCTTATGGGGGT
** * *
14465019 ATTTCGGTCATTTTACCTTATGGGGGT
1 ATAACAGTCATTTTATCTTATGGGGGT
**
14465046 ATTTCAGTCAT
1 ATAACAGTCAT
14465057 CTTACCCTAT
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.22, C:0.16, G:0.22, T:0.40
Consensus pattern (27 bp):
ATAACAGTCATTTTATCTTATGGGGGT
Found at i:14465061 original size:27 final size:27
Alignment explanation
Indices: 14464996--14465130 Score: 153
Period size: 27 Copynumber: 5.0 Consensus size: 27
14464986 GGAGGTATAA
*
14464996 CAGTCATTTTATCTTATGGGGGTATTT
1 CAGTCATTTTACCTTATGGGGGTATTT
*
14465023 CGGTCATTTTACCTTATGGGGGTATTT
1 CAGTCATTTTACCTTATGGGGGTATTT
* * * * *
14465050 CAGTCATCTTACCCTATGAGGATAATT
1 CAGTCATTTTACCTTATGGGGGTATTT
* *
14465077 CAGTCATTTTACCCTATGAGGGTATTT
1 CAGTCATTTTACCTTATGGGGGTATTT
** * *
14465104 TGGTCATTCTACCTTATGGCGGTATTT
1 CAGTCATTTTACCTTATGGGGGTATTT
14465131 TGATCATTTA
Statistics
Matches: 91, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 91 1.00
ACGTcount: A:0.20, C:0.17, G:0.21, T:0.42
Consensus pattern (27 bp):
CAGTCATTTTACCTTATGGGGGTATTT
Found at i:14467814 original size:69 final size:69
Alignment explanation
Indices: 14467659--14467816 Score: 253
Period size: 69 Copynumber: 2.3 Consensus size: 69
14467649 TCCATAGCTG
* * *
14467659 AGCTATGGCCTTATACCCTACAATCCTAGTGTTTACTATCTTAGAAGACTCTTTTGGTTGCCATA
1 AGCTATGGTCTTATACCTTACAATCCTAGTGTTTACTATCCTAGAAGACTCTTTTGGTTGCCATA
14467724 ACCA
66 ACCA
* *
14467728 AGCTATGGTCTTATACCTTACAATCCTAGTGTTTACTGTCCTGGAAGACTCTTTTGGTTGCCATA
1 AGCTATGGTCTTATACCTTACAATCCTAGTGTTTACTATCCTAGAAGACTCTTTTGGTTGCCATA
*
14467793 ATCA
66 ACCA
*
14467797 GGCTATGGTCTTATACCTTA
1 AGCTATGGTCTTATACCTTA
14467817 TACCTCTTTG
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
69 82 1.00
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (69 bp):
AGCTATGGTCTTATACCTTACAATCCTAGTGTTTACTATCCTAGAAGACTCTTTTGGTTGCCATA
ACCA
Found at i:14470060 original size:90 final size:90
Alignment explanation
Indices: 14469836--14470156 Score: 331
Period size: 90 Copynumber: 3.6 Consensus size: 90
14469826 TACTGGCAAC
* * * * *
14469836 TTTTATCTGCAAACTTGTTGTGTATGCACAACTACTGACAACGTATTAACTTGCAAAACTGGTGG
1 TTTTATCTACAAACTCGTTGTGTATTCACAACTACTGACAATGTATTAACCTGCAAAACTGGTGG
* * *** * *
14469901 TTTATCCA-CAAACTTATTGCTAGT
66 TTCATCCATGATTTTTACTGGTAGT
* * * * * *
14469925 TTTTATCTACAAAC-CTGTTGTGTATTCACAACTACTAATAGTGTATTAACCTGCAACATTAGTG
1 TTTTATCTACAAACTC-GTTGTGTATTCACAACTACTGACAATGTATTAACCTGCAAAACTGGTG
14469989 GTTCATCCATGATTTTTACTGGTAGT
65 GTTCATCCATGATTTTTACTGGTAGT
* * * * * *
14470015 TTTTATCTACAAACTCGTTTTGTATTCACAACTAATGGCAATGTATTAACCTACAATACCGGTGG
1 TTTTATCTACAAACTCGTTGTGTATTCACAACTACTGACAATGTATTAACCTGCAAAACTGGTGG
*
14470080 TTCATCCATGATTTTTACTGGTAGC
66 TTCATCCATGATTTTTACTGGTAGT
* * * * ** *
14470105 TTTTATCTACAAACCCATTGTGTACTCACAACTAGTGGTAGTGTATTAACCT
1 TTTTATCTACAAACTCGTTGTGTATTCACAACTACTGACAATGTATTAACCT
14470157 AAAATATTGT
Statistics
Matches: 192, Mismatches: 37, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
89 60 0.31
90 131 0.68
91 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (90 bp):
TTTTATCTACAAACTCGTTGTGTATTCACAACTACTGACAATGTATTAACCTGCAAAACTGGTGG
TTCATCCATGATTTTTACTGGTAGT
Found at i:14470175 original size:180 final size:179
Alignment explanation
Indices: 14469836--14470177 Score: 398
Period size: 180 Copynumber: 1.9 Consensus size: 179
14469826 TACTGGCAAC
* * * * * *
14469836 TTTTATCTGCAAACTTGTTGTGTATGCACAACTACTGACAACGTATTAACTTGCAAAACTGGTGG
1 TTTTATCTACAAACTCGTTGTGTATGCACAACTAATGACAACGTATTAACCTACAAAACCGGTGG
* * * ** *
14469901 TTTATCCACAAACTTATTGCTAGTTTTTATCTACAAACCTGTTGTGTATTCACAACTACTAATAG
66 TTCATCCACAAACTTACTGCTAGCTTTTATCTACAAACCCATTGTGTACTCACAACTACTAATAG
** *
14469966 TGTATTAACCTGCAACATTAGTGGTTCATCCATGATTTTTACTGGTAGT
131 TGTATTAACCTAAAACATTAGTAGTTCATCCATGATTTTTACTGGTAGT
* * * * *
14470015 TTTTATCTACAAACTCGTTTTGTATTCACAACTAATGGCAATGTATTAACCTACAATACCGGTGG
1 TTTTATCTACAAACTCGTTGTGTATGCACAACTAATGACAACGTATTAACCTACAAAACCGGTGG
* *** * * **
14470080 TTCATCCATGATTTTTACTGGTAGCTTTTATCTACAAACCCATTGTGTACTCACAACTAGTGGTA
66 TTCATCCA-CAAACTTACTGCTAGCTTTTATCTACAAACCCATTGTGTACTCACAACTACTAATA
*
14470145 GTGTATTAACCTAAAATATT-GTTAGTTCATCCA
130 GTGTATTAACCTAAAACATTAG-TAGTTCATCCA
14470178 CAAACTAGAG
Statistics
Matches: 132, Mismatches: 29, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
179 62 0.47
180 70 0.53
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (179 bp):
TTTTATCTACAAACTCGTTGTGTATGCACAACTAATGACAACGTATTAACCTACAAAACCGGTGG
TTCATCCACAAACTTACTGCTAGCTTTTATCTACAAACCCATTGTGTACTCACAACTACTAATAG
TGTATTAACCTAAAACATTAGTAGTTCATCCATGATTTTTACTGGTAGT
Found at i:14476149 original size:39 final size:39
Alignment explanation
Indices: 14476053--14476495 Score: 397
Period size: 39 Copynumber: 11.4 Consensus size: 39
14476043 TAGAAATACA
* * * *
14476053 GTGATTATACGGGCTATGCGCCTAGCAGGCTTTGTGCCG
1 GTGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGCCG
* * * *
14476092 ATG-TTATTCGGGTTAAGTGCCTAGTAGGCTTTGTGCCG
1 GTGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGCCG
* * * * *
14476130 GTGATTATTCAGGTTAAGTGCCTAGCCGTCTTTGTGTCA
1 GTGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGCCG
* * * *
14476169 GTGACTATTCCGGCTAAGTGCCTAGCAGGCATTGTGCTG
1 GTGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGCCG
* * * *
14476208 CTGATTATTCAGGCTATGTGCCTAGCAGGCATTATGCCG
1 GTGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGCCG
* * * *
14476247 GTGATTATTC-GAGCTAAGTGCCCAACAGGCATTGTGCTG
1 GTGATTATTCAG-GCTAAGTGCCTAGCAGGCTTTGTGCCG
* * * *
14476286 CTGATTATTCAGGCTATGTGCCTAGCAGGCATTATGCCG
1 GTGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGCCG
* * **
14476325 GTGATTATTC-GAGCTAAGTGCCCAACAGGCTTTGTGTTG
1 GTGATTATTCAG-GCTAAGTGCCTAGCAGGCTTTGTGCCG
* * * * *
14476364 CTGATTATTCGGGCTCAGTGCCTAGCAGGCTTTGTGTCA
1 GTGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGCCG
* ** * *
14476403 ATGATTATTTGGGCTAAGTACCTAGCAGGCTTTGTGTCG
1 GTGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGCCG
* ** * * * *
14476442 GTGAGTATTTGGGCTATGTGCCTAGCAGGCTTTATACAG
1 GTGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGCCG
14476481 GTGATTATTCAGGCT
1 GTGATTATTCAGGCT
14476496 TTGTGCTGGT
Statistics
Matches: 329, Mismatches: 70, Indels: 10
0.80 0.17 0.02
Matches are distributed among these distances:
38 34 0.10
39 293 0.89
40 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.29, T:0.33
Consensus pattern (39 bp):
GTGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGCCG
Found at i:14476256 original size:117 final size:117
Alignment explanation
Indices: 14476051--14476495 Score: 446
Period size: 117 Copynumber: 3.8 Consensus size: 117
14476041 AATAGAAATA
* * * * * * *
14476051 CAGTGATTATACGGGCTATGCGCCTAGCAGGCTTTGTGCCGATG-TTATTCGGGTTAAGTGCCTA
1 CAGTGATTATTCAGGCTAAGTGCCTAGCAGGCATTGTGCCGGTGATTATTCGGGCTAAGTGCCTA
* * * * *
14476115 GTAGGCTTTGTGCCGGTGATTATTCAGGTTAAGTGCCTAGCCGTCTTTGTGT
66 GCAGGCTTTATGCCGGTGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGT
* * * * * *
14476167 CAGTGACTATTCCGGCTAAGTGCCTAGCAGGCATTGTGCTGCTGATTATTCAGGCTATGTGCCTA
1 CAGTGATTATTCAGGCTAAGTGCCTAGCAGGCATTGTGCCGGTGATTATTCGGGCTAAGTGCCTA
* * * *
14476232 GCAGGCATTATGCCGGTGATTATTC-GAGCTAAGTGCCCAACAGGCATTGTG-
66 GCAGGCTTTATGCCGGTGATTATTCAG-GCTAAGTGCCTAGCAGGCTTTGTGT
* * * * *
14476283 CTGCTGATTATTCAGGCTATGTGCCTAGCAGGCATTATGCCGGTGATTATTCGAGCTAAGTGCCC
1 CAG-TGATTATTCAGGCTAAGTGCCTAGCAGGCATTGTGCCGGTGATTATTCGGGCTAAGTGCCT
* * ** * * *
14476348 AACAGGCTTTGTGTTGCTGATTATTCGGGCTCAGTGCCTAGCAGGCTTTGTGT
65 AGCAGGCTTTATGCCGGTGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGT
* ** * * * * * *
14476401 CAATGATTATTTGGGCTAAGTACCTAGCAGGCTTTGTGTCGGTGAGTATTTGGGCTATGTGCCTA
1 CAGTGATTATTCAGGCTAAGTGCCTAGCAGGCATTGTGCCGGTGATTATTCGGGCTAAGTGCCTA
* *
14476466 GCAGGCTTTATACAGGTGATTATTCAGGCT
66 GCAGGCTTTATGCCGGTGATTATTCAGGCT
14476496 TTGTGCTGGT
Statistics
Matches: 262, Mismatches: 62, Indels: 9
0.79 0.19 0.03
Matches are distributed among these distances:
116 39 0.15
117 221 0.84
118 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.29, T:0.33
Consensus pattern (117 bp):
CAGTGATTATTCAGGCTAAGTGCCTAGCAGGCATTGTGCCGGTGATTATTCGGGCTAAGTGCCTA
GCAGGCTTTATGCCGGTGATTATTCAGGCTAAGTGCCTAGCAGGCTTTGTGT
Found at i:14483364 original size:17 final size:17
Alignment explanation
Indices: 14483344--14483394 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
14483334 GCTTAGTATT
14483344 TTTGGATAAATTATTGA
1 TTTGGATAAATTATTGA
*
14483361 TTTGAGA-AAATTAGTTAA
1 TTTG-GATAAATTA-TTGA
14483379 TTT-GATAAATT-TTGA
1 TTTGGATAAATTATTGA
14483394 T
1 T
14483395 AAGGGACTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
15 4 0.14
16 2 0.07
17 15 0.52
18 8 0.28
ACGTcount: A:0.37, C:0.00, G:0.16, T:0.47
Consensus pattern (17 bp):
TTTGGATAAATTATTGA
Found at i:14483750 original size:39 final size:39
Alignment explanation
Indices: 14483704--14484131 Score: 540
Period size: 39 Copynumber: 11.0 Consensus size: 39
14483694 AATAGAAATA
* * *
14483704 CGGTGATTATTCGGGCTAAGCGCCTAGCAGGCTTTATGC
1 CGGTGATTATTCGGGCTATGTGCCTAGCAGGCTTTGTGC
* * *
14483743 CGATGATTATTCGGGATATGTGCCTAGTAGGCTTTGTGC
1 CGGTGATTATTCGGGCTATGTGCCTAGCAGGCTTTGTGC
* * *
14483782 TGGTGATTATTTGGGCTAAGTGCCTAGCAGGCTTTGTGC
1 CGGTGATTATTCGGGCTATGTGCCTAGCAGGCTTTGTGC
* *
14483821 TGGTGATTATTCGGGCTATGTGCCTAGCTGGCTTTGTGC
1 CGGTGATTATTCGGGCTATGTGCCTAGCAGGCTTTGTGC
* * * *
14483860 TGGTGATTATTCAGACTAAGTGCCTAGCAGGCTTTGTGC
1 CGGTGATTATTCGGGCTATGTGCCTAGCAGGCTTTGTGC
* * *
14483899 TGCTAATTATTCGGGCT-TAGTGCCTAGCAGGCTTTGTGC
1 CGGTGATTATTCGGGCTAT-GTGCCTAGCAGGCTTTGTGC
*
14483938 CGGTGATTATTCGGGCTAAGTGCCTAGCAGGCTTTGTGC
1 CGGTGATTATTCGGGCTATGTGCCTAGCAGGCTTTGTGC
* * * *
14483977 CGGAT-ATTATTTGAGCTATGTACCTAGTAGGCTTTGTGC
1 CGG-TGATTATTCGGGCTATGTGCCTAGCAGGCTTTGTGC
14484016 CGGTGATTATTCGGGCTATGTGCCTAGCAGGCTTTGT-C
1 CGGTGATTATTCGGGCTATGTGCCTAGCAGGCTTTGTGC
* * * **
14484054 AGGTGATTATTCGGGATTTGTGCCTAAAAGG-TTTGTGC
1 CGGTGATTATTCGGGCTATGTGCCTAGCAGGCTTTGTGC
* *
14484092 CGGTGATTATTCGGGCTTTGTGCCTAGCAGGCTATGTGC
1 CGGTGATTATTCGGGCTATGTGCCTAGCAGGCTTTGTGC
14484131 C
1 C
14484132 AGTGTATTGG
Statistics
Matches: 336, Mismatches: 47, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
37 5 0.01
38 56 0.17
39 274 0.82
40 1 0.00
ACGTcount: A:0.16, C:0.18, G:0.31, T:0.35
Consensus pattern (39 bp):
CGGTGATTATTCGGGCTATGTGCCTAGCAGGCTTTGTGC
Found at i:14485579 original size:15 final size:15
Alignment explanation
Indices: 14485559--14485590 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
14485549 TTCGGTAAGT
*
14485559 TAGTATTTGACAACA
1 TAGTATTCGACAACA
14485574 TAGTATTCGACAACA
1 TAGTATTCGACAACA
14485589 TA
1 TA
14485591 CATCAAACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.41, C:0.16, G:0.12, T:0.31
Consensus pattern (15 bp):
TAGTATTCGACAACA
Found at i:14487807 original size:18 final size:16
Alignment explanation
Indices: 14487774--14487813 Score: 62
Period size: 18 Copynumber: 2.4 Consensus size: 16
14487764 TTCAATATGG
14487774 ATTTTACTTTTATTTT
1 ATTTTACTTTTATTTT
14487790 ATTTTACTATTGTATTTT
1 ATTTTACT-TT-TATTTT
14487808 ATTTTA
1 ATTTTA
14487814 ATAAGGATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 8 0.36
17 2 0.09
18 12 0.55
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.70
Consensus pattern (16 bp):
ATTTTACTTTTATTTT
Found at i:14489957 original size:22 final size:22
Alignment explanation
Indices: 14489916--14489971 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
14489906 GATATTATAT
** *
14489916 GATATGATATGTTATAAGATGC
1 GATATGATATGACATAAGATCC
*
14489938 GATATGATATGACATGAGATCC
1 GATATGATATGACATAAGATCC
*
14489960 GATTTGATATGA
1 GATATGATATGA
14489972 TATGTTATTA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.36, C:0.07, G:0.23, T:0.34
Consensus pattern (22 bp):
GATATGATATGACATAAGATCC
Found at i:14491208 original size:19 final size:19
Alignment explanation
Indices: 14491184--14491221 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
14491174 CCTTCAGTTG
14491184 GAATCTTCGTAAAATAATT
1 GAATCTTCGTAAAATAATT
14491203 GAATCTTCGTAAAATAATT
1 GAATCTTCGTAAAATAATT
14491222 TTGCATCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.37
Consensus pattern (19 bp):
GAATCTTCGTAAAATAATT
Found at i:14495333 original size:13 final size:13
Alignment explanation
Indices: 14495315--14495339 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14495305 TGTCGTTCCA
14495315 GTGACTTAATTTG
1 GTGACTTAATTTG
14495328 GTGACTTAATTT
1 GTGACTTAATTT
14495340 CATGGTTGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.20, T:0.48
Consensus pattern (13 bp):
GTGACTTAATTTG
Found at i:14495720 original size:63 final size:60
Alignment explanation
Indices: 14495642--14495784 Score: 186
Period size: 61 Copynumber: 2.4 Consensus size: 60
14495632 TTTTTCTAAT
* * *
14495642 ATTATATATTTTTATTTTTATTAATTCATATTTTAATAATAATTATATTAAGAATTTTATTAA
1 ATTATATATTTTTATTTTTATTAATT-ATA-TTTAATAATAATTAGATTAA-AATATAATTAA
14495705 ATTATATATTTTTA-TTTTATTAAATTATATTTAATAATAATTAGATTAAAATATAATTAA
1 ATTATATATTTTTATTTTTATT-AATTATATTTAATAATAATTAGATTAAAATATAATTAA
*
14495765 A--ATAT-TTATTATTTTTATTA
1 ATTATATATTTTTATTTTTATTA
14495785 CATTTAATAA
Statistics
Matches: 74, Mismatches: 4, Indels: 10
0.84 0.05 0.11
Matches are distributed among these distances:
57 6 0.08
58 11 0.15
60 10 0.14
61 19 0.26
62 10 0.14
63 18 0.24
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (60 bp):
ATTATATATTTTTATTTTTATTAATTATATTTAATAATAATTAGATTAAAATATAATTAA
Found at i:14496511 original size:40 final size:38
Alignment explanation
Indices: 14496456--14496531 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 38
14496446 CATTTGGATA
14496456 AAAAACGCCACTAAAAATCAAGCATTAGCGGCGCTTTTAC
1 AAAAACGCCACTAAAAAT-AAGCATTAGCGGCG-TTTTAC
*
14496496 AAAAACGCCGCTAAAAATAAGCATTAGCGGCGTTTT
1 AAAAACGCCACTAAAAATAAGCATTAGCGGCGTTTT
14496532 CCAACCGCAA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
38 4 0.11
39 14 0.40
40 17 0.49
ACGTcount: A:0.39, C:0.22, G:0.17, T:0.21
Consensus pattern (38 bp):
AAAAACGCCACTAAAAATAAGCATTAGCGGCGTTTTAC
Found at i:14496639 original size:41 final size:41
Alignment explanation
Indices: 14496579--14496742 Score: 188
Period size: 41 Copynumber: 4.0 Consensus size: 41
14496569 CAGAGTTTTG
14496579 GGGGCATTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTT
1 GGGGC-TTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTT
** **
14496621 GGGGCTTTAGCGAAGTTTTTGAAAAAGTGCCGCTAATGCTT
1 GGGGCTTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTT
* * *
14496662 GGGGATTTAGCGGCGTTTTTTAAAAAG-AGCCCCTAATG-TT
1 GGGGCTTTAGCGGCGTTTTTGAAAAAGCA-CCGCTAATGCTT
* * * *
14496702 CGAGCCTTTAGCGGCGTTTTTGGAAAAGCACTGCTAATGCT
1 -GGGGCTTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCT
14496743 CGTACCTTTT
Statistics
Matches: 101, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
40 2 0.02
41 92 0.91
42 7 0.07
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (41 bp):
GGGGCTTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTT
Found at i:14496751 original size:41 final size:41
Alignment explanation
Indices: 14496585--14496769 Score: 158
Period size: 41 Copynumber: 4.5 Consensus size: 41
14496575 TTTGGGGGCA
* **
14496585 TTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTTGGGGC
1 TTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTCGGACC
** ** * ***
14496626 TTTAGCGAAGTTTTTGAAAAAGTGCCGCTAATGCTTGGGGA
1 TTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTCGGACC
* * *
14496667 TTTAGCGGCGTTTTTTAAAAAG-AGCCCCTAATGTTC-GAGCC
1 TTTAGCGGCGTTTTTGAAAAAGCA-CCGCTAATGCTCGGA-CC
* * *
14496708 TTTAGCGGCGTTTTTGGAAAAGCACTGCTAATGCTCGTACC
1 TTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTCGGACC
* *
14496749 TTTTGCGGCATTTTTAGAAAA
1 TTTAGCGGCGTTTTT-GAAAA
14496770 GCGTCGGCGT
Statistics
Matches: 115, Mismatches: 24, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
40 1 0.01
41 108 0.94
42 6 0.05
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTCGGACC
Found at i:14497914 original size:6 final size:7
Alignment explanation
Indices: 14497890--14497949 Score: 50
Period size: 7 Copynumber: 8.7 Consensus size: 7
14497880 ACAGTTTTGA
14497890 GTTTAGG
1 GTTTAGG
14497897 GTTTAGG
1 GTTTAGG
14497904 GTTTA-G
1 GTTTAGG
*
14497910 GTTTAAG
1 GTTTAGG
* *
14497917 GCTTGGG
1 GTTTAGG
* *
14497924 GATTGGG
1 GTTTAGG
*
14497931 GTTTAAG
1 GTTTAGG
*
14497938 GTTTAGA
1 GTTTAGG
14497945 GTTTA
1 GTTTA
14497950 CATTTTAGTG
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
6 6 0.14
7 37 0.86
ACGTcount: A:0.18, C:0.02, G:0.38, T:0.42
Consensus pattern (7 bp):
GTTTAGG
Found at i:14498397 original size:24 final size:25
Alignment explanation
Indices: 14498361--14498408 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
14498351 TTAAAATGAA
14498361 TTTTAAAAGATTT-TAAACTTTTAT
1 TTTTAAAAGATTTATAAACTTTTAT
* * *
14498385 TTTTATAATATTTATATACTTTTA
1 TTTTAAAAGATTTATAAACTTTTA
14498409 AAGAAAAGAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.58
Consensus pattern (25 bp):
TTTTAAAAGATTTATAAACTTTTAT
Found at i:14498532 original size:7 final size:7
Alignment explanation
Indices: 14498520--14498551 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
14498510 TGTTTAAATT
14498520 AAATAAA
1 AAATAAA
14498527 AAATAAA
1 AAATAAA
14498534 AAATAAA
1 AAATAAA
14498541 AAATAAA
1 AAATAAA
14498548 AAAT
1 AAAT
14498552 GTAATACCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (7 bp):
AAATAAA
Found at i:14498706 original size:41 final size:41
Alignment explanation
Indices: 14498644--14498730 Score: 138
Period size: 41 Copynumber: 2.1 Consensus size: 41
14498634 AAGTTCTACG
*
14498644 ATTTTGGGCCGACTTTATTATACGGGCAAATCCATATAAAA
1 ATTTTGGGCCAACTTTATTATACGGGCAAATCCATATAAAA
* **
14498685 ATTTTGGGCCAACTTTGTTATACGGGCTTATCCATATAAAA
1 ATTTTGGGCCAACTTTATTATACGGGCAAATCCATATAAAA
14498726 ATTTT
1 ATTTT
14498731 ATCCATATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (41 bp):
ATTTTGGGCCAACTTTATTATACGGGCAAATCCATATAAAA
Found at i:14502494 original size:43 final size:43
Alignment explanation
Indices: 14502436--14502571 Score: 146
Period size: 43 Copynumber: 3.1 Consensus size: 43
14502426 GTTTTCAGCG
* ** * * * *
14502436 GCGTTTGTGACAAAAAGCTTCGCTTAAGGTCATGTTTTTTAGTA
1 GCGTTTGT-AGAAAAAGCACCGCTAAAGGTCATGGTCTTTAGCA
*
14502480 GCGTTTGTAGAAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCA
1 GCGTTTGTAGAAAAAGCACCGCTAAAGGTCATGGTCTTTAGCA
* * * *
14502523 GTGTTTGTGGGAAAAGCACCGCTAAAGGTCATGGTATTTAGCA
1 GCGTTTGTAGAAAAAGCACCGCTAAAGGTCATGGTCTTTAGCA
*
14502566 ACGTTT
1 GCGTTT
14502572 ATTTCTAAAA
Statistics
Matches: 78, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
43 70 0.90
44 8 0.10
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (43 bp):
GCGTTTGTAGAAAAAGCACCGCTAAAGGTCATGGTCTTTAGCA
Found at i:14511266 original size:27 final size:27
Alignment explanation
Indices: 14511242--14511383 Score: 175
Period size: 27 Copynumber: 5.3 Consensus size: 27
14511232 AGAAGTATAA
14511242 CAGTCATTTTACCCTATGGGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
*
14511269 C-GATCATTTTACCC--TGAGGGTATTT
1 CAG-TCATTTTACCCTATGGGGGTATTT
* *
14511294 CAGTCATTTTACCTTATAGGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
* * *
14511321 CGGTCATTTTACCCTATGAGGGCATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
*
14511348 CGGTCATTTTACCCTATGGGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
14511375 C-GATCATTT
1 CAG-TCATTT
14511384 ATTGACCGCT
Statistics
Matches: 99, Mismatches: 11, Indels: 10
0.82 0.09 0.08
Matches are distributed among these distances:
25 21 0.21
26 3 0.03
27 75 0.76
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.41
Consensus pattern (27 bp):
CAGTCATTTTACCCTATGGGGGTATTT
Found at i:14511303 original size:52 final size:53
Alignment explanation
Indices: 14511242--14511383 Score: 223
Period size: 54 Copynumber: 2.7 Consensus size: 53
14511232 AGAAGTATAA
*
14511242 CAGTCATTTTACCCTATGGGGGTATTTCGATCATTTTACCC-TGAGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTTCGATCATTTTACCCATGAGGGCATTT
* * *
14511294 CAGTCATTTTACCTTATAGGGGTATTTCGGTCATTTTACCCTATGAGGGCATTT
1 CAGTCATTTTACCCTATGGGGGTATTTCGATCATTTTACCC-ATGAGGGCATTT
*
14511348 CGGTCATTTTACCCTATGGGGGTATTTCGATCATTT
1 CAGTCATTTTACCCTATGGGGGTATTTCGATCATTT
14511384 ATTGACCGCT
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
52 38 0.47
54 42 0.52
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.41
Consensus pattern (53 bp):
CAGTCATTTTACCCTATGGGGGTATTTCGATCATTTTACCCATGAGGGCATTT
Found at i:14512357 original size:34 final size:32
Alignment explanation
Indices: 14512314--14512391 Score: 97
Period size: 32 Copynumber: 2.4 Consensus size: 32
14512304 CAAAGACAAA
*
14512314 AAGAGAAAG-ATATTCGGCCAAAGAAGAAGAAGAG
1 AAGAGAAAGAAGATTCGGCC--AGAAGAA-AAGAG
*
14512348 AAGAGAAAGAAGATTCGGCCAGTAGAAAAGAG
1 AAGAGAAAGAAGATTCGGCCAGAAGAAAAGAG
14512380 AAGAGAAA-AAGA
1 AAGAGAAAGAAGA
14512392 GAGAGAGGAT
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
31 4 0.10
32 13 0.32
33 6 0.15
34 9 0.22
35 9 0.22
ACGTcount: A:0.55, C:0.08, G:0.29, T:0.08
Consensus pattern (32 bp):
AAGAGAAAGAAGATTCGGCCAGAAGAAAAGAG
Found at i:14518722 original size:28 final size:28
Alignment explanation
Indices: 14518656--14518734 Score: 94
Period size: 28 Copynumber: 3.0 Consensus size: 28
14518646 ATATCAGTAC
**
14518656 AGTGTGGGCC-TAGCCTGATACAGTAAT
1 AGTGTGGGCCTTAGCCCAATACAGTAAT
**
14518683 AGTGTGATCCTTAGCCCAATACAGTAAT
1 AGTGTGGGCCTTAGCCCAATACAGTAAT
14518711 AGTGTGGGCCTT---CCAATACAGTAA
1 AGTGTGGGCCTTAGCCCAATACAGTAA
14518735 CAGTAGAGTG
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
25 12 0.27
27 8 0.18
28 25 0.56
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (28 bp):
AGTGTGGGCCTTAGCCCAATACAGTAAT
Found at i:14522567 original size:24 final size:24
Alignment explanation
Indices: 14522536--14522583 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
14522526 TAGTGAATGA
14522536 TTGATTATAAACTATTGTCAATTT
1 TTGATTATAAACTATTGTCAATTT
14522560 TTGATTATAAACTATTGTCAATTT
1 TTGATTATAAACTATTGTCAATTT
14522584 AGAAAATAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.08, T:0.50
Consensus pattern (24 bp):
TTGATTATAAACTATTGTCAATTT
Found at i:14529118 original size:20 final size:22
Alignment explanation
Indices: 14529074--14529121 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 22
14529064 CCTATATGTA
* *
14529074 TAAATTAACCTATATTAATAAC
1 TAAATTAACCTATATAAAAAAC
14529096 TAAATTAACC-AT-TAAAAAAC
1 TAAATTAACCTATATAAAAAAC
14529116 TAAATT
1 TAAATT
14529122 TAATAGTTCG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 12 0.50
21 2 0.08
22 10 0.42
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAATTAACCTATATAAAAAAC
Found at i:14529828 original size:12 final size:12
Alignment explanation
Indices: 14529811--14529839 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
14529801 AAAGGAAAAA
14529811 ATTTTCAAAATT
1 ATTTTCAAAATT
14529823 ATTTTCAAAATT
1 ATTTTCAAAATT
14529835 ATTTT
1 ATTTT
14529840 TCTGAATCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (12 bp):
ATTTTCAAAATT
Found at i:14537422 original size:50 final size:50
Alignment explanation
Indices: 14537347--14537677 Score: 411
Period size: 50 Copynumber: 6.6 Consensus size: 50
14537337 TGTGAGCCAG
14537347 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
*
14537397 TGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
* *
14537447 TGTAAGACCATAT-TCGGGACATGGCATTGTCACCGAGATGAGAGGTCCCA
1 TGTAAGACCATGTCT-GGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
* * *
14537497 TGTAAGACCATGTATGGGACATGGCATTGGCA-CTAGGATGAGAGGTCCCC
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGA-GATGAGAGGTCCCA
* * * * **
14537547 CGTAAGACCATGTCTGGGACATGGCATGGGCATCGATATGAGAACTCCCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
* * * * ** *
14537597 TGTAAGACCATATCTGGGATATGGCATTGGCAGTTC-A-A-GAAACATCTCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCA--CCGAGATGAGAGGTCCCA
*
14537646 TGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCA
14537678 TGTTATTATA
Statistics
Matches: 249, Mismatches: 26, Indels: 13
0.86 0.09 0.05
Matches are distributed among these distances:
49 39 0.16
50 204 0.82
51 4 0.02
52 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (50 bp):
TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
Found at i:14539196 original size:23 final size:23
Alignment explanation
Indices: 14539164--14539207 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
14539154 GAGAGAAATG
*
14539164 TAATATCCCGAAAATTACTACTA
1 TAATACCCCGAAAATTACTACTA
14539187 TAATACCCCGAAAATTACTAC
1 TAATACCCCGAAAATTACTAC
14539208 AGTAAGAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.43, C:0.25, G:0.05, T:0.27
Consensus pattern (23 bp):
TAATACCCCGAAAATTACTACTA
Found at i:14549137 original size:43 final size:43
Alignment explanation
Indices: 14549075--14549308 Score: 281
Period size: 43 Copynumber: 5.4 Consensus size: 43
14549065 TTTTAGAAAT
* * * * *
14549075 AAACGCCGCTA-AAAGTCATGACCTTTAGCGGCGCTTCTCCCAC
1 AAACGCCGCTATAGA-TCATGACTTTTAGCAGTGCTTTTCCCAC
* * *
14549118 AAACGCCGCTATAGATCATGACTTTTAGCGGTGCTTTTCCTAT
1 AAACGCCGCTATAGATCATGACTTTTAGCAGTGCTTTTCCCAC
* * **
14549161 AAACGCCGCTATAGATCATGACTTTTAGTAGTACTTTTCTGAC
1 AAACGCCGCTATAGATCATGACTTTTAGCAGTGCTTTTCCCAC
* *
14549204 AAACGCCGCTATAGATCATGACTTTTAGTAGCGCTTTTCCCCAC
1 AAACGCCGCTATAGATCATGACTTTTAGCAGTGCTTTT-CCCAC
* **
14549248 AAATGCCGCTATAGATCATGACTTTTAGCAGTGCTCCTCCCAC
1 AAACGCCGCTATAGATCATGACTTTTAGCAGTGCTTTTCCCAC
*
14549291 AAACACCGCTATAGATCA
1 AAACGCCGCTATAGATCA
14549309 CTTTTAGCGG
Statistics
Matches: 166, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
43 128 0.77
44 38 0.23
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.29
Consensus pattern (43 bp):
AAACGCCGCTATAGATCATGACTTTTAGCAGTGCTTTTCCCAC
Found at i:14549307 original size:130 final size:129
Alignment explanation
Indices: 14549075--14549308 Score: 335
Period size: 130 Copynumber: 1.8 Consensus size: 129
14549065 TTTTAGAAAT
*
14549075 AAACGCCGCTAAAAGTCATGACCTTTAGCGGCGCTTCTCCCACAAACGCCGCTATAGATCATGAC
1 AAACGCCGCTAAAAGTCATGACCTTTAGCAGCGCTTCTCCCACAAACGCCGCTATAGATCATGAC
* ** * * *
14549140 TTTTAGCGGTGCTTTTCCTATAAACGCCGCTATAGATCATGACTTTTAGTAGTACTTTTCTGAC
66 TTTTAGCAGTGCTCCTCCCACAAACACCGCTATAGATCATGACTTTTAGTAGTACTTTTCTGAC
* * * * *
14549204 AAACGCCGCT-ATAGATCATGACTTTTAGTAGCGCTTTTCCCCACAAATGCCGCTATAGATCATG
1 AAACGCCGCTAAAAG-TCATGACCTTTAGCAGCGCTTCT-CCCACAAACGCCGCTATAGATCATG
14549268 ACTTTTAGCAGTGCTCCTCCCACAAACACCGCTATAGATCA
64 ACTTTTAGCAGTGCTCCTCCCACAAACACCGCTATAGATCA
14549309 CTTTTAGCGG
Statistics
Matches: 91, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
128 3 0.03
129 29 0.32
130 59 0.65
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.29
Consensus pattern (129 bp):
AAACGCCGCTAAAAGTCATGACCTTTAGCAGCGCTTCTCCCACAAACGCCGCTATAGATCATGAC
TTTTAGCAGTGCTCCTCCCACAAACACCGCTATAGATCATGACTTTTAGTAGTACTTTTCTGAC
Found at i:14554222 original size:50 final size:50
Alignment explanation
Indices: 14554101--14554332 Score: 240
Period size: 50 Copynumber: 4.7 Consensus size: 50
14554091 AATAACATGC
* * * * *
14554101 CCAA-GCCATGTCCCAGACATGGTCTTACATGGGATGTTTTATGTAC--TT
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCTCATCT-CGGTG
* * * *
14554149 CCAATGCCATATCCCAGATATGGTCTTACATGGGATTTCTCATATCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCTCATCTCGGTG
* * * *
14554199 CCCATGCCATGTCCCATACATGGTCTTAC-GGAGGACCTCTCATCTCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATG-GGATCTCTCATCTCGGTG
* * * *
14554249 CCAACGCCATGTCCCAGACATGGTCTTACATGGGAGCTCTTATCTTGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCTCATCTCGGTG
*
14554299 CCAACT-CCATGTCCCAAACATGGTCTTACATGGG
1 CCAA-TGCCATGTCCCAGACATGGTCTTACATGGG
14554333 GCCTCTTTAC
Statistics
Matches: 154, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
48 5 0.03
49 35 0.23
50 113 0.73
51 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (50 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCTCATCTCGGTG
Found at i:14561719 original size:50 final size:50
Alignment explanation
Indices: 14561598--14561823 Score: 217
Period size: 50 Copynumber: 4.6 Consensus size: 50
14561588 AATAACATGC
* * ** *
14561598 CCAA-GCCATGTCCCAAACATGGTTTTACATGGGA--TGTTTTCT-GTACTG
1 CCAATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCG--GTG
* * * ** *
14561646 CCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTG
1 CCAATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGGTG
* **
14561696 CCCATGCCATGTCCCAAACATGGTCTTACGGGGGACCTCTCATCTCGGTG
1 CCAATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGGTG
* * * **
14561746 CCAATGCCATGTCCTAGACATGGTCTTACATGGGACCTCTTATCTCAATG
1 CCAATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGGTG
* *
14561796 CCAACGCCATGTCCCATACATGGTCTTA
1 CCAATGCCATGTCCCAAACATGGTCTTA
14561824 TTGAGACCTT
Statistics
Matches: 145, Mismatches: 29, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
48 4 0.03
49 26 0.18
50 110 0.76
51 4 0.03
52 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (50 bp):
CCAATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGGTG
Found at i:14561777 original size:100 final size:100
Alignment explanation
Indices: 14561644--14561823 Score: 252
Period size: 100 Copynumber: 1.8 Consensus size: 100
14561634 TTTTCTGTAC
* ** ** * *
14561644 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATGTC
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATATCAATGCCAACGCCATGTC
14561709 CCAAACATGGTCTTACGGGGGACCTCTCATCTCGG
66 CCAAACATGGTCTTACGGGGGACCTCTCATCTCGG
* * * *
14561744 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGACCTCTTATCTCAATGCCAACGCCATGTC
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATATCAATGCCAACGCCATGTC
*
14561809 CCATACATGGTCTTA
66 CCAAACATGGTCTTA
14561824 TTGAGACCTT
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
100 68 1.00
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (100 bp):
TGCCAATGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATATCAATGCCAACGCCATGTC
CCAAACATGGTCTTACGGGGGACCTCTCATCTCGG
Found at i:14565618 original size:9 final size:9
Alignment explanation
Indices: 14565530--14565739 Score: 98
Period size: 9 Copynumber: 23.2 Consensus size: 9
14565520 TAAGTATAAT
14565530 TAAGTTATG
1 TAAGTTATG
*
14565539 TAACTTATG
1 TAAGTTATG
* *
14565548 ATAAGAATATA
1 -TAAG-TTATG
14565559 TAA-TTATG
1 TAAGTTATG
14565567 T-A-TTATG
1 TAAGTTATG
*
14565574 CAAGTTATG
1 TAAGTTATG
* *
14565583 ATAATAGTATTTA
1 -T-A-AGT-TATG
*
14565596 TAAGTTGT-
1 TAAGTTATG
14565604 TAAGTTATG
1 TAAGTTATG
14565613 TAAGTTATG
1 TAAGTTATG
*
14565622 TGAGTTATG
1 TAAGTTATG
14565631 T-AGATTATG
1 TAAG-TTATG
* * *
14565640 ATATGATACATA
1 -TAAG-T-TATG
14565652 TAAGTTAT-
1 TAAGTTATG
*
14565660 TAAGTTAGG
1 TAAGTTATG
14565669 TAAGTTATG
1 TAAGTTATG
*
14565678 CAAGTTATG
1 TAAGTTATG
14565687 TAAGTTA--
1 TAAGTTATG
*
14565694 TAA-TATATA
1 TAAGT-TATG
*
14565703 TAAGTTGT-
1 TAAGTTATG
*
14565711 TAACTTATG
1 TAAGTTATG
14565720 TAAGTTATG
1 TAAGTTATG
*
14565729 TGAGTTATG
1 TAAGTTATG
14565738 TA
1 TA
14565740 GATTATGATA
Statistics
Matches: 154, Mismatches: 28, Indels: 38
0.70 0.13 0.17
Matches are distributed among these distances:
6 1 0.01
7 11 0.07
8 27 0.18
9 84 0.55
10 12 0.08
11 11 0.07
12 6 0.04
13 2 0.01
ACGTcount: A:0.37, C:0.02, G:0.18, T:0.43
Consensus pattern (9 bp):
TAAGTTATG
Found at i:14565663 original size:56 final size:56
Alignment explanation
Indices: 14565594--14565855 Score: 292
Period size: 56 Copynumber: 4.8 Consensus size: 56
14565584 TAATAGTATT
* *
14565594 TATAAGTTGTTAAGTTATGTAAGTTATGTGAGTTATGTAGATTATGATATGATACA
1 TATAAGTTATTAAGTTATGTAAGTTATGTGAGTTATGTAGATTATGATATGATATA
* ** *
14565650 TATAAGTTATTAAGTTAGGTAAGTTATGCAAGTTATGTA-AGT-T-ATA--ATATA
1 TATAAGTTATTAAGTTATGTAAGTTATGTGAGTTATGTAGATTATGATATGATATA
* *
14565701 TATAAGTTGTTAACTTATGTAAGTTATGTGAGTTATGTAGATTATGATATGATATA
1 TATAAGTTATTAAGTTATGTAAGTTATGTGAGTTATGTAGATTATGATATGATATA
* * * * * * *
14565757 TATAAGTTATT-A-TTCA-CTAATTTATGAGA-TACATTTA-AGTTACGGTATGATATA
1 TATAAGTTATTAAGTT-ATGTAAGTTATGTGAGT-TATGTAGA-TTATGATATGATATA
14565811 TATAAGTTATTAAGTTATGTAAGTTATGTGAGTTATGTAGATTAT
1 TATAAGTTATTAAGTTATGTAAGTTATGTGAGTTATGTAGATTAT
14565856 CAATCTAATA
Statistics
Matches: 167, Mismatches: 26, Indels: 26
0.76 0.12 0.12
Matches are distributed among these distances:
51 38 0.23
52 2 0.01
53 6 0.04
54 44 0.26
55 6 0.04
56 69 0.41
57 2 0.01
ACGTcount: A:0.35, C:0.03, G:0.18, T:0.44
Consensus pattern (56 bp):
TATAAGTTATTAAGTTATGTAAGTTATGTGAGTTATGTAGATTATGATATGATATA
Found at i:14565725 original size:51 final size:52
Alignment explanation
Indices: 14565594--14565756 Score: 186
Period size: 51 Copynumber: 3.1 Consensus size: 52
14565584 TAATAGTATT
**
14565594 TATAAGTTGTTAAGTTATGTAAGTTATGTGAGTTATGTAGATTATGATATGATACA
1 TATAAGTTGTTAAGTTATGTAAGTTATGCAAGTTATGTAGATTAT-A-AT-ATA-A
* *
14565650 TATAAGTTATTAAGTTAGGTAAGTTATGCAAGTTATGTA-AGTTATAATAT-A
1 TATAAGTTGTTAAGTTATGTAAGTTATGCAAGTTATGTAGA-TTATAATATAA
* ** * *
14565701 TATAAGTTGTTAACTTATGTAAGTTATGTGAGTTATGTAGATTATGATATGA
1 TATAAGTTGTTAAGTTATGTAAGTTATGCAAGTTATGTAGATTATAATATAA
14565753 TATA
1 TATA
14565757 TATAAGTTAT
Statistics
Matches: 94, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
51 43 0.46
52 6 0.06
53 2 0.02
54 2 0.02
55 2 0.02
56 39 0.41
ACGTcount: A:0.36, C:0.02, G:0.20, T:0.43
Consensus pattern (52 bp):
TATAAGTTGTTAAGTTATGTAAGTTATGCAAGTTATGTAGATTATAATATAA
Found at i:14565752 original size:107 final size:105
Alignment explanation
Indices: 14565569--14565855 Score: 352
Period size: 107 Copynumber: 2.7 Consensus size: 105
14565559 TAATTATGTA
* * *
14565569 TTATGCAAGTTATG--A-TAATAGTATTTATAAGTTGTTAAGTTATGTAAGTTATGTGAGTTATG
1 TTATGCAAGTTATGTAAGTTATAATATATATAAGTTGTTAAGTTATGTAAGTTATGTGAGTTATG
*
14565631 TAGATTATGATATGATACATATAAGTTATTAAGTT-AGGTAAG
66 TAGATTATGATATGATACATATAAGTTATT-A-TTCA-CTAAG
*
14565673 TTATGCAAGTTATGTAAGTTATAATATATATAAGTTGTTAACTTATGTAAGTTATGTGAGTTATG
1 TTATGCAAGTTATGTAAGTTATAATATATATAAGTTGTTAAGTTATGTAAGTTATGTGAGTTATG
* *
14565738 TAGATTATGATATGATATATATAAGTTATTATTCACTAAT
66 TAGATTATGATATGATACATATAAGTTATTATTCACTAAG
* * *
14565778 TTATG--AGATACATTTAAGTTACGGTATGATATATATAAGTTATTAAGTTATGTAAGTTATGTG
1 TTATGCAAG-T-TATGTAAGTTA---TA--ATATATATAAGTTGTTAAGTTATGTAAGTTATGTG
14565841 AGTTATGTAGATTAT
59 AGTTATGTAGATTAT
14565856 CAATCTAATA
Statistics
Matches: 161, Mismatches: 11, Indels: 16
0.86 0.06 0.09
Matches are distributed among these distances:
103 2 0.01
104 15 0.09
105 19 0.12
106 3 0.02
107 72 0.45
108 2 0.01
110 48 0.30
ACGTcount: A:0.36, C:0.03, G:0.18, T:0.44
Consensus pattern (105 bp):
TTATGCAAGTTATGTAAGTTATAATATATATAAGTTGTTAAGTTATGTAAGTTATGTGAGTTATG
TAGATTATGATATGATACATATAAGTTATTATTCACTAAG
Found at i:14565835 original size:9 final size:9
Alignment explanation
Indices: 14565813--14565849 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
14565803 ATGATATATA
14565813 TAAGTTAT-
1 TAAGTTATG
14565821 TAAGTTATG
1 TAAGTTATG
14565830 TAAGTTATG
1 TAAGTTATG
*
14565839 TGAGTTATG
1 TAAGTTATG
14565848 TA
1 TA
14565850 GATTATCAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
8 8 0.31
9 18 0.69
ACGTcount: A:0.32, C:0.00, G:0.22, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:14567759 original size:39 final size:38
Alignment explanation
Indices: 14567692--14567767 Score: 109
Period size: 39 Copynumber: 1.9 Consensus size: 38
14567682 TGATACATTA
14567692 ATATGACATTATTTTTAATTGTTAAATTTTCTAAAATTTTC
1 ATATGACATTA-TTTTAATTGTTAAA-TTT-TAAAATTTTC
*
14567733 ATATGACATTA-TTTAATTGTTCAATTTTAAAATTT
1 ATATGACATTATTTTAATTGTTAAATTTTAAAATTT
14567768 AATATAATGA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
37 8 0.24
38 3 0.09
39 12 0.35
41 11 0.32
ACGTcount: A:0.36, C:0.07, G:0.05, T:0.53
Consensus pattern (38 bp):
ATATGACATTATTTTAATTGTTAAATTTTAAAATTTTC
Found at i:14567868 original size:15 final size:15
Alignment explanation
Indices: 14567848--14567878 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
14567838 TAATAATTCT
14567848 ATTAATTATTTTTAA
1 ATTAATTATTTTTAA
*
14567863 ATTAATTTTTTTTAA
1 ATTAATTATTTTTAA
14567878 A
1 A
14567879 GTACGGAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
ATTAATTATTTTTAA
Found at i:14568268 original size:14 final size:13
Alignment explanation
Indices: 14568251--14568295 Score: 56
Period size: 14 Copynumber: 3.4 Consensus size: 13
14568241 TTTAAACACT
14568251 AAACTCCAAACCTC
1 AAAC-CCAAACCTC
14568265 AAACCCTAAACCTC
1 AAACCC-AAACCTC
*
14568279 AATCCCAAACC-C
1 AAACCCAAACCTC
14568291 AAACC
1 AAACC
14568296 TTAAACCATA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 5 0.18
13 7 0.25
14 16 0.57
ACGTcount: A:0.44, C:0.44, G:0.00, T:0.11
Consensus pattern (13 bp):
AAACCCAAACCTC
Found at i:14568547 original size:14 final size:14
Alignment explanation
Indices: 14568517--14568556 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
14568507 TACTAATTAA
*
14568517 TCTAAACCTTAAACC
1 TCTAAACCTT-ATCC
*
14568532 TCTAACCCTTATCC
1 TCTAAACCTTATCC
14568546 TCTAAACCTTA
1 TCTAAACCTTA
14568557 AATTAAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
14 13 0.59
15 9 0.41
ACGTcount: A:0.33, C:0.35, G:0.00, T:0.33
Consensus pattern (14 bp):
TCTAAACCTTATCC
Found at i:14568681 original size:21 final size:21
Alignment explanation
Indices: 14568657--14568735 Score: 72
Period size: 21 Copynumber: 3.7 Consensus size: 21
14568647 TCCAACCCCT
14568657 AACCCATAAACCTTAAATCCC
1 AACCCATAAACCTTAAATCCC
* *
14568678 AACCCTTAAACCAT-AATCCC
1 AACCCATAAACCTTAAATCCC
* *
14568698 TAATCCATAATCCTTAAAT-CC
1 -AACCCATAAACCTTAAATCCC
*
14568719 ACACTCCCTAAACCTTA
1 A-AC-CCATAAACCTTA
14568736 CACTATTAAC
Statistics
Matches: 45, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
20 7 0.16
21 25 0.56
22 13 0.29
ACGTcount: A:0.39, C:0.37, G:0.00, T:0.24
Consensus pattern (21 bp):
AACCCATAAACCTTAAATCCC
Found at i:14568682 original size:42 final size:42
Alignment explanation
Indices: 14568650--14568732 Score: 105
Period size: 42 Copynumber: 2.0 Consensus size: 42
14568640 CCTAACCTCC
*
14568650 AACCCCTAACCCATAAACCTTAAATCCCAACCCTTAAACCAT
1 AACCCCTAACCCATAAACCTTAAATCCCAACCCCTAAACCAT
* * *
14568692 AATCCCTAATCCATAATCCTTAAAT-CCACACTCCCTAAACC
1 AACCCCTAACCCATAAACCTTAAATCCCA-AC-CCCTAAACC
14568733 TTACACTATT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
41 3 0.09
42 24 0.69
43 8 0.23
ACGTcount: A:0.39, C:0.40, G:0.00, T:0.22
Consensus pattern (42 bp):
AACCCCTAACCCATAAACCTTAAATCCCAACCCCTAAACCAT
Found at i:14569214 original size:41 final size:41
Alignment explanation
Indices: 14569122--14569327 Score: 234
Period size: 41 Copynumber: 5.0 Consensus size: 41
14569112 TTGCGGTGCA
** *
14569122 TTTTCAAAAACGCTACTAAAGCCCCGAGCATTAGCGACGCT
1 TTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCGGCGCT
** ** * *
14569163 CCTTGGAAAACGCCGCTATAGTCCCGAGCATTAGCGGCGCT
1 TTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCGGCGCT
* * *
14569204 TTTTCAAAAACGCTGCTAAATCCCCGA-CTTTAGCGGCGCT
1 TTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCGGCGCT
* ** *
14569244 TTTTCAACAACGCCGCTAAAGCCCCGAGCATTAGTAGTGCT
1 TTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCGGCGCT
* * *
14569285 TTTTCTAAAACGCCGCTAAAGCCCTGAACATTAGCGGCGCT
1 TTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCGGCGCT
14569326 TT
1 TT
14569328 CTAAAGCCCT
Statistics
Matches: 132, Mismatches: 32, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
40 36 0.27
41 96 0.73
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (41 bp):
TTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCGGCGCT
Found at i:14569274 original size:81 final size:80
Alignment explanation
Indices: 14569122--14569327 Score: 241
Period size: 81 Copynumber: 2.5 Consensus size: 80
14569112 TTGCGGTGCA
* * * * * *
14569122 TTTTCAAAAACGCTACTAAAGCCCCGAGCATTAGCGACGCTCCTTGGAAAACGCCGCTATAGTCC
1 TTTTCAAAAACGCTGCTAAAGCCCCGA-CATTAGCGGCGCT-TTTGCAAAACGCCGCTAAAGCCC
*
14569187 CGAGCATTAGCGGCGCT
64 CGAGCATTAGCAGCGCT
* * *
14569204 TTTTCAAAAACGCTGCTAAATCCCCGACTTTAGCGGCGCTTTTTCAACAACGCCGCTAAAGCCCC
1 TTTTCAAAAACGCTGCTAAAGCCCCGACATTAGCGGCGCTTTTGCAA-AACGCCGCTAAAGCCCC
* *
14569269 GAGCATTAGTAGTGCT
65 GAGCATTAGCAGCGCT
* * *
14569285 TTTTCTAAAACGCCGCTAAAGCCCTGAACATTAGCGGCGCTTT
1 TTTTCAAAAACGCTGCTAAAGCCCCG-ACATTAGCGGCGCTTT
14569328 CTAAAGCCCT
Statistics
Matches: 105, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
80 4 0.04
81 61 0.58
82 40 0.38
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (80 bp):
TTTTCAAAAACGCTGCTAAAGCCCCGACATTAGCGGCGCTTTTGCAAAACGCCGCTAAAGCCCCG
AGCATTAGCAGCGCT
Found at i:14591048 original size:58 final size:58
Alignment explanation
Indices: 14590978--14591092 Score: 221
Period size: 58 Copynumber: 2.0 Consensus size: 58
14590968 TAATTAATGC
*
14590978 ATTTAGTGACTAAATGGCTTAATTATTATTTGAGAAAGGAGCTATATGGTCATTAGGA
1 ATTTAGTGACTAAATGGCTTAATTATTAATTGAGAAAGGAGCTATATGGTCATTAGGA
14591036 ATTTAGTGACTAAATGGCTTAATTATTAATTGAGAAAGGAGCTATATGGTCATTAGG
1 ATTTAGTGACTAAATGGCTTAATTATTAATTGAGAAAGGAGCTATATGGTCATTAGG
14591093 CCTTAATTAA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.35, C:0.07, G:0.23, T:0.36
Consensus pattern (58 bp):
ATTTAGTGACTAAATGGCTTAATTATTAATTGAGAAAGGAGCTATATGGTCATTAGGA
Found at i:14592174 original size:35 final size:35
Alignment explanation
Indices: 14592122--14592284 Score: 157
Period size: 35 Copynumber: 4.6 Consensus size: 35
14592112 TACTCTCTAT
**
14592122 TTGGCGTGTTTCAGTTGGACTAGCTCGTATGAGCA
1 TTGGCGTGTTTTGGTTGGACTAGCTCGTATGAGCA
* *
14592157 TTGGCGTGTTTTGGTTGGACTAGTTCTTATGAGCA
1 TTGGCGTGTTTTGGTTGGACTAGCTCGTATGAGCA
* *** *
14592192 TTGGCATGTTCCAGTTGGACTAGCTCTTATGAGCA
1 TTGGCGTGTTTTGGTTGGACTAGCTCGTATGAGCA
* ** *
14592227 TTTGGTGTGTTTTGGAGGGA-TTGACTCGTATGAGCA
1 -TTGGCGTGTTTTGGTTGGACTAG-CTCGTATGAGCA
* *
14592263 TCTGGCGTGTTATGGCTGGACT
1 T-TGGCGTGTTTTGGTTGGACT
14592285 GACGATGTTC
Statistics
Matches: 102, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
35 64 0.63
36 37 0.36
37 1 0.01
ACGTcount: A:0.16, C:0.15, G:0.32, T:0.37
Consensus pattern (35 bp):
TTGGCGTGTTTTGGTTGGACTAGCTCGTATGAGCA
Done.