Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60343961
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 596159 characters in sequence are not A, C, G, or T
File 74 of 204
Found at i:22367004 original size:37 final size:39
Alignment explanation
Indices: 22366938--22367010 Score: 96
Period size: 38 Copynumber: 1.9 Consensus size: 39
22366928 TGTGGATTTG
* **
22366938 AATTGAATATTGACTTGAAAATGGCAAAGT-AAATTTTT
1 AATTGAATAGTGACTTGAAAATGAAAAAGTGAAATTTTT
*
22366976 AATTGAATAGTGA-TTGAAAGTGAAAAAGTGAAATT
1 AATTGAATAGTGACTTGAAAATGAAAAAGTGAAATT
22367011 ATGAAAAAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
37 13 0.43
38 17 0.57
ACGTcount: A:0.45, C:0.03, G:0.19, T:0.33
Consensus pattern (39 bp):
AATTGAATAGTGACTTGAAAATGAAAAAGTGAAATTTTT
Found at i:22377243 original size:20 final size:20
Alignment explanation
Indices: 22377208--22377256 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
22377198 ATCATGGTCT
*
22377208 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTGTTTACTTAC
22377227 TCT-CTTACTTGTTTACTTAC
1 T-TGCTTACTTGTTTACTTAC
22377247 TTGCTTACTT
1 TTGCTTACTT
22377257 AAAAAACTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.12, C:0.24, G:0.06, T:0.57
Consensus pattern (20 bp):
TTGCTTACTTGTTTACTTAC
Found at i:22377565 original size:50 final size:50
Alignment explanation
Indices: 22377485--22377617 Score: 158
Period size: 50 Copynumber: 2.7 Consensus size: 50
22377475 CAATGCCATA
** * *
22377485 TCCCAGATATGGTCTTACAAGGGAGTTCTCATATCGATGCCCATGCAATG
1 TCCCAGATATGGTCTTACAAGGGACCTCTCATATCGATGCCAACGCAATG
** * *
22377535 TCCCAGATATGGTCTTACGGGGGACCTCTCATCTCGATGCCAACGCCATG
1 TCCCAGATATGGTCTTACAAGGGACCTCTCATATCGATGCCAACGCAATG
* * * *
22377585 TCCCAAACATGATCTTACATGGGACCTCTCATA
1 TCCCAGATATGGTCTTACAAGGGACCTCTCATA
22377618 ACCTCAATAA
Statistics
Matches: 69, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 69 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (50 bp):
TCCCAGATATGGTCTTACAAGGGACCTCTCATATCGATGCCAACGCAATG
Found at i:22383103 original size:13 final size:14
Alignment explanation
Indices: 22383087--22383136 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 14
22383077 ATTTAAAAAA
22383087 AAAGAGTGAAAA-G
1 AAAGAGTGAAAAGG
* *
22383100 AAAGTGAGAAAAGGG
1 AAAGAGTGAAAA-GG
22383115 AAAGA-TGAAAAGG
1 AAAGAGTGAAAAGG
*
22383128 AAAAAGTGA
1 AAAGAGTGA
22383137 GTGAAAAACT
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
13 16 0.55
14 8 0.28
15 5 0.17
ACGTcount: A:0.60, C:0.00, G:0.32, T:0.08
Consensus pattern (14 bp):
AAAGAGTGAAAAGG
Found at i:22391109 original size:49 final size:49
Alignment explanation
Indices: 22390983--22391139 Score: 266
Period size: 49 Copynumber: 3.2 Consensus size: 49
22390973 CTTACTTTGA
*
22390983 GAATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTGTATATATGTGATAGGGCCTAATGGCCGATGTGAT
*
22391030 GAATGTG-AAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTGTATATATGTGATAGGGCCTAATGGCCGATGTGAT
22391078 GAATGTGAAAGTGTGTATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTGTATATATGTGATAGGGCCTAATGGCCGATGTGAT
22391127 GAATGTGATAAGT
1 GAATGTGA-AAGT
22391140 CCCGAAGGGC
Statistics
Matches: 103, Mismatches: 3, Indels: 5
0.93 0.03 0.05
Matches are distributed among these distances:
46 2 0.02
47 7 0.07
48 42 0.41
49 48 0.47
50 4 0.04
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.31
Consensus pattern (49 bp):
GAATGTGAAAGTGTGTATATATGTGATAGGGCCTAATGGCCGATGTGAT
Found at i:22391309 original size:36 final size:36
Alignment explanation
Indices: 22391253--22391331 Score: 113
Period size: 36 Copynumber: 2.2 Consensus size: 36
22391243 ATCCGAGCTC
* * *
22391253 TAAGACCCGATGACTACGTGTGGGGATTTTGTCCGGG
1 TAAGA-CCGATAACTACGTGTGGAGATTATGTCCGGG
*
22391290 TAAGACCGATAACTTCGTGTGGAGATTATGTCCGGG
1 TAAGACCGATAACTACGTGTGGAGATTATGTCCGGG
22391326 TAAGAC
1 TAAGAC
22391332 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
36 33 0.87
37 5 0.13
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (36 bp):
TAAGACCGATAACTACGTGTGGAGATTATGTCCGGG
Found at i:22393269 original size:39 final size:43
Alignment explanation
Indices: 22393172--22393270 Score: 170
Period size: 43 Copynumber: 2.4 Consensus size: 43
22393162 TTGGTTTTCA
22393172 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
22393215 GCACTAAGTGTGCGGGCAA-AAGT-TTCACGGTTGTGAGA-T-
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
22393254 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
22393271 TTGAAATGCA
Statistics
Matches: 56, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
39 17 0.30
40 1 0.02
41 15 0.27
42 4 0.07
43 19 0.34
ACGTcount: A:0.23, C:0.16, G:0.35, T:0.25
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:22393319 original size:28 final size:29
Alignment explanation
Indices: 22393254--22393324 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 29
22393244 GTTGTGAGAT
* *
22393254 GCACTAAGTGTGCGGGCTTGAAATGCATG
1 GCACTAAGTGTGCGAGCTTGAAATACATG
* *
22393283 GCACTAAGTGTGCGAG-TTTAAGTACATG
1 GCACTAAGTGTGCGAGCTTGAAATACATG
22393311 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
22393325 TGGTTGTATT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
28 23 0.61
29 15 0.39
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.25
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTTGAAATACATG
Found at i:22393753 original size:37 final size:39
Alignment explanation
Indices: 22393628--22393941 Score: 312
Period size: 38 Copynumber: 8.3 Consensus size: 39
22393618 TCGAACGATG
* ** *
22393628 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACATA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCT-AGTGA-GTA
* * ** * * *
22393667 TCCGGACTAAGATCCGAAG-GCATTGGTGCGAGTTACTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGAGTA
* * *
22393705 ACCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGAGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGAGTA
*
22393744 T-C-GGCTAAGTCCCGAAGAGCATTCATGCTAGTGAGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGAGTA
22393781 -CCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGA-GTA
*
22393820 TCCGGGCTAAGTT-CG-A-AG-ATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGA-GTA
*
22393856 TCCGGGCTAAGTTCCG-AGAGCA-TCGTGCTAGTGAGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGAGTA
* *
22393893 TCC-GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGA-GTA
*
22393932 TCCGTGCTAA
1 TCCGGGCTAA
22393942 ACCCAAAGCA
Statistics
Matches: 239, Mismatches: 23, Indels: 25
0.83 0.08 0.09
Matches are distributed among these distances:
36 42 0.18
37 52 0.22
38 76 0.32
39 46 0.19
40 23 0.10
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGAGTA
Found at i:22393854 original size:36 final size:39
Alignment explanation
Indices: 22393628--22393977 Score: 293
Period size: 37 Copynumber: 9.2 Consensus size: 39
22393618 TCGAACGATG
* * **
22393628 TCCGGGCTAAGTCCCGA-AGGC-TTTGTGCTAAGTGACATA
1 TCCGGGCTAAGTTCCGAGA-GCATTCGTGCT-AGTGATGTA
* * * * * *
22393667 TCCGGACTAAGATCCGA-AGGCATTGGTGCGAGTTA-CTA
1 TCCGGGCTAAGTTCCGAGA-GCATTCGTGCTAGTGATGTA
* * * *
22393705 ACCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGA-GTA
1 TCCGGGCTAAGTTCCG-AGAGCATTCGTGCTAGTGATGTA
* *
22393744 T-C-GGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-GTA
1 TCCGGGCTAAGTTCCG-AGAGCATTCGTGCTAGTGATGTA
*
22393781 -CCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTTCCG-AGAGCATTCGTGCTAGTGATGTA
22393820 TCCGGGCTAAGTT-CGA-AG-ATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAGAGCATTCGTGCTAGTGATGTA
22393856 TCCGGGCTAAGTTCCGAGAGCA-TCGTGCTAGTGA-GTA
1 TCCGGGCTAAGTTCCGAGAGCATTCGTGCTAGTGATGTA
*
22393893 TCC-GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTTCCG-AGAGCATTCGTGCTAGTGATGTA
* * * * * * *
22393932 TCCGTGCTAA--ACCCAAAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTTCCGAGAGCATTCGTGCTAGTGATGTA
22393969 TCCGGGCTA
1 TCCGGGCTA
22393978 GGTCCCGAAG
Statistics
Matches: 268, Mismatches: 29, Indels: 30
0.82 0.09 0.09
Matches are distributed among these distances:
36 42 0.16
37 80 0.30
38 75 0.28
39 47 0.18
40 24 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTTCCGAGAGCATTCGTGCTAGTGATGTA
Found at i:22393900 original size:112 final size:115
Alignment explanation
Indices: 22393628--22394004 Score: 337
Period size: 112 Copynumber: 3.3 Consensus size: 115
22393618 TCGAACGATG
** * * *
22393628 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACATATCCGGACTAAGATCCGAAG-GCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-GTA-CCGGGCTAAGTTCCGAAGAGCAT
** * * * * * *
22393690 TGGTGCGAGT--TACTAACCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGA-GTA
63 TCATGCTAGTGATA-TATCCGGGCTAA-ACCC-AA-AGCATTCGTGCTAGTGATATA
22393744 T-C-GGCTAAGTCCCGAAGAGCATTCATGCTAGTGAGTACCGGGCTAAGTTCCGAAGAGCATTCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAGTACCGGGCTAAGTTCCGAAGAGCATTCA
* *** * *
22393807 TGCTAGTGATGTATCCGGGCTAAGTTCGAAG-ATTCGTGCTAGTGATGTA
66 TGCTAGTGATATATCCGGGCTAAACCCAAAGCATTCGTGCTAGTGATATA
* *
22393856 TCCGGGCTAAGTTCCG-AGAGCA-TCGTGCTAGTGAGTATCC-GGCTAAGTTCCGAAGAGCATTC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAGTA-CCGGGCTAAGTTCCGAAGAGCATTC
* * * *
22393918 GTGCTAGTGATATATCCGTGCTAAACCCAAAGCATTCGTGCTGGTGTTATA
65 ATGCTAGTGATATATCCGGGCTAAACCCAAAGCATTCGTGCTAGTGATATA
* * * *
22393969 TCCGGGCTAGGTCCCGAAGAGTAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
22394005 CGTGTATTCG
Statistics
Matches: 216, Mismatches: 33, Indels: 25
0.79 0.12 0.09
Matches are distributed among these distances:
111 12 0.06
112 67 0.31
113 55 0.25
114 45 0.21
115 29 0.13
116 8 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (115 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAGTACCGGGCTAAGTTCCGAAGAGCATTCA
TGCTAGTGATATATCCGGGCTAAACCCAAAGCATTCGTGCTAGTGATATA
Found at i:22393971 original size:76 final size:77
Alignment explanation
Indices: 22393628--22393989 Score: 281
Period size: 76 Copynumber: 4.8 Consensus size: 77
22393618 TCGAACGATG
* * * *
22393628 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACATATCCGGACTAAGAT-CCGAAG-GCAT
1 TCCGGGCTAAGT-CCGAAAGCATTCGTGCT-AGTG-TATATCCGGGCTAAG-TCCCGAAGAGCAT
* * * *
22393690 TGGTGCGAGTTA-CTA
62 TCGTGCTAGTGATGTA
* * *
22393705 ACCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCG-AGTAT-C-GGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGT-CCGAA-AGCATTCGTGCTAGTGTA-TATCCGGGCTAAGTCCCGAAGAGCATT
*
22393767 CATGCTAGTGA-GTA
63 CGTGCTAGTGATGTA
* * *
22393781 -CCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGT-TCG-A-AG-ATT
1 TCCGGGCTAAG-TCCGAA-AGCATTCGTGCTAGTG-TATATCCGGGCTAAGTCCCGAAGAGCATT
22393841 CGTGCTAGTGATGTA
63 CGTGCTAGTGATGTA
* *
22393856 TCCGGGCTAAGTTCCGAGAGCA-TCGTGCTAGTG-AGTATCC-GGCTAAGTTCCGAAGAGCATTC
1 TCCGGGCTAAG-TCCGAAAGCATTCGTGCTAGTGTA-TATCCGGGCTAAGTCCCGAAGAGCATTC
*
22393918 GTGCTAGTGATATA
64 GTGCTAGTGATGTA
* * * * *
22393932 TCCGTGCTAA-ACCCAAAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAG
1 TCCGGGCTAAGTCCGAAAGCATTCGTGCTAGTG-TATATCCGGGCTAAGTCCCGAAGAG
22393990 TAATCATGCT
Statistics
Matches: 237, Mismatches: 27, Indels: 42
0.77 0.09 0.14
Matches are distributed among these distances:
72 8 0.03
73 7 0.03
74 32 0.14
75 64 0.27
76 68 0.29
77 39 0.16
78 13 0.05
79 6 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (77 bp):
TCCGGGCTAAGTCCGAAAGCATTCGTGCTAGTGTATATCCGGGCTAAGTCCCGAAGAGCATTCGT
GCTAGTGATGTA
Found at i:22397583 original size:47 final size:47
Alignment explanation
Indices: 22397452--22397607 Score: 276
Period size: 47 Copynumber: 3.3 Consensus size: 47
22397442 CTTACTTTGA
*
22397452 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGAT
22397499 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAGGGCCTAATGGCCGATGTGAT
22397548 GAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGAT
22397595 GAATGTGATAAGT
1 GAATGTGA-AAGT
22397608 CCCGAAGGGC
Statistics
Matches: 105, Mismatches: 1, Indels: 5
0.95 0.01 0.05
Matches are distributed among these distances:
47 55 0.52
48 4 0.04
49 46 0.44
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (47 bp):
GAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGAT
Found at i:22397781 original size:37 final size:37
Alignment explanation
Indices: 22397725--22397803 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
22397715 CCGAGCTCTA
* * *
22397725 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
22397762 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
22397799 AAGAC
1 AAGAC
22397804 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:22404127 original size:50 final size:50
Alignment explanation
Indices: 22404055--22404177 Score: 156
Period size: 50 Copynumber: 2.5 Consensus size: 50
22404045 TATCCCAAAT
* ** * *
22404055 ATGGTCTTACATGGGAATTCTCATATCGGTGCCCATGCCATGTCCCAGAC
1 ATGGTCTTACACGGGACCTCTCATATCGGTGCCAACGCCATGTCCCAGAC
** * * *
22404105 ATGGTCTTACGGGGGACCTCTCATCTTGGTGCCAACGCCATGTCCCAGAG
1 ATGGTCTTACACGGGACCTCTCATATCGGTGCCAACGCCATGTCCCAGAC
22404155 ATGGTCTTACACGGGACCTCTCA
1 ATGGTCTTACACGGGACCTCTCA
22404178 GAACCTTAAT
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 62 1.00
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
ATGGTCTTACACGGGACCTCTCATATCGGTGCCAACGCCATGTCCCAGAC
Found at i:22414207 original size:47 final size:48
Alignment explanation
Indices: 22414129--22414240 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 48
22414119 CCAAGGTCAG
* * **
22414129 AGATAAACTACCATATAATTAGAATCGTGAACAGCATCACATTAATGC
1 AGATAAACTACCATATAATCAGAATCATGAACAGCATCACATTAACAC
* * **
22414177 AGAT-AACTGCCATATAATCAGATTCATGAACAGTGTCACATTAACAC
1 AGATAAACTACCATATAATCAGAATCATGAACAGCATCACATTAACAC
22414224 AGATAAACTACCATATA
1 AGATAAACTACCATATA
22414241 CTTCCACCTT
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
47 39 0.72
48 15 0.28
ACGTcount: A:0.44, C:0.20, G:0.12, T:0.25
Consensus pattern (48 bp):
AGATAAACTACCATATAATCAGAATCATGAACAGCATCACATTAACAC
Found at i:22418176 original size:54 final size:54
Alignment explanation
Indices: 22418060--22418169 Score: 143
Period size: 54 Copynumber: 2.0 Consensus size: 54
22418050 AAATTTTTTT
* * *
22418060 AAAAAAATATTGGGTGTTGGGACAATGATGGTCGACACCCTCGTACTAGATTTA
1 AAAAAAAAATTGGGTGTTGGGACAATGATGGTCCACACCCTCGTACCAGATTTA
*
22418114 AAAAAAAAATTGGGTGTTGGGACATTGATGG-CCATCA-CCTCAGTACCAGAATTTA
1 AAAAAAAAATTGGGTGTTGGGACAATGATGGTCCA-CACCCTC-GTACCAG-ATTTA
22418169 A
1 A
22418170 TTAAAAAGTA
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
53 6 0.12
54 37 0.76
55 6 0.12
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.26
Consensus pattern (54 bp):
AAAAAAAAATTGGGTGTTGGGACAATGATGGTCCACACCCTCGTACCAGATTTA
Found at i:22418226 original size:21 final size:21
Alignment explanation
Indices: 22418200--22418239 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
22418190 GATAAATTAA
22418200 TTTAAAAGAATA-AATTTAAAT
1 TTTAAAA-AATAGAATTTAAAT
22418221 TTTAAAAAATAGAATTTAA
1 TTTAAAAAATAGAATTTAA
22418240 TTAAAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (21 bp):
TTTAAAAAATAGAATTTAAAT
Found at i:22418231 original size:20 final size:18
Alignment explanation
Indices: 22418191--22418491 Score: 92
Period size: 18 Copynumber: 17.2 Consensus size: 18
22418181 ATATTGAAGG
22418191 ATAAA-TTAATTTAAAAGA
1 ATAAATTTAATTTAAAA-A
22418209 ATAAATTTAAATTTTAAAAA
1 ATAAATTT-AA-TTTAAAAA
22418229 ATAGAATTTAA-TTAAAAA
1 ATA-AATTTAATTTAAAAA
***
22418247 ATAAA--TAA-TTAATGG
1 ATAAATTTAATTTAAAAA
* *
22418262 ATAAATAT-ATTTAAAGGA
1 ATAAATTTAATTTAAA-AA
*
22418280 ATAAATTTAAATTTTAAAA
1 ATAAATTT-AATTTAAAAA
*
22418299 ATAGAATTTAA-CT--AAA
1 ATA-AATTTAATTTAAAAA
**
22418315 A-AAA--TAA-TTAAAGG
1 ATAAATTTAATTTAAAAA
* *
22418329 ATAAATCT-ATTTAAAGGA
1 ATAAATTTAATTTAAA-AA
*
22418347 ATAAATTCAAATTTTAAAAA
1 ATAAATT-TAA-TTTAAAAA
*
22418367 ATAGAATTTAA-TAAAAGAA
1 ATA-AATTTAATTTAAA-AA
* **
22418386 AGAAA--TAA-TTAAAGG
1 ATAAATTTAATTTAAAAA
* *
22418401 GTAAA-TTAATTTAAAGGA
1 ATAAATTTAATTTAAA-AA
22418419 ATAAATTTAAATTTAAAAA
1 ATAAATTT-AATTTAAAAA
*
22418438 ATAGAATTTAA-ATAAAAA
1 ATA-AATTTAATTTAAAAA
* **
22418456 AGAAA--TAA-TTAAAGG
1 ATAAATTTAATTTAAAAA
22418471 ATAAA-TTAATTTAAATAA
1 ATAAATTTAATTTAAA-AA
22418489 ATA
1 ATA
22418492 GAAATTAAAA
Statistics
Matches: 216, Mismatches: 35, Indels: 64
0.69 0.11 0.20
Matches are distributed among these distances:
12 4 0.02
14 4 0.02
15 30 0.14
16 19 0.09
17 25 0.12
18 53 0.25
19 20 0.09
20 39 0.18
21 22 0.10
ACGTcount: A:0.59, C:0.01, G:0.08, T:0.32
Consensus pattern (18 bp):
ATAAATTTAATTTAAAAA
Found at i:22418284 original size:33 final size:33
Alignment explanation
Indices: 22418246--22418352 Score: 83
Period size: 33 Copynumber: 3.2 Consensus size: 33
22418236 TTAATTAAAA
22418246 AATAAATAATTAATGGATAAATATATTTAAAGG
1 AATAAATAATTAATGGATAAATATATTTAAAGG
** * * ***
22418279 AATAAAT--TTAAATTTTAAAAATAGAATTTAACTA
1 AATAAATAATT-AA-TGGATAAATA-TATTTAAAGG
* * *
22418313 AAAAAATAATTAAAGGATAAATCTATTTAAAGG
1 AATAAATAATTAATGGATAAATATATTTAAAGG
22418346 AATAAAT
1 AATAAAT
22418353 TCAAATTTTA
Statistics
Matches: 51, Mismatches: 18, Indels: 10
0.65 0.23 0.13
Matches are distributed among these distances:
31 2 0.04
32 2 0.04
33 26 0.51
34 17 0.33
35 2 0.04
36 2 0.04
ACGTcount: A:0.57, C:0.02, G:0.08, T:0.33
Consensus pattern (33 bp):
AATAAATAATTAATGGATAAATATATTTAAAGG
Found at i:22418299 original size:70 final size:71
Alignment explanation
Indices: 22418161--22418485 Score: 470
Period size: 71 Copynumber: 4.6 Consensus size: 71
22418151 CCTCAGTACC
* *
22418161 AGAATTTAATT-AAAAAGTAAAT-ATTGAAGGATAAATTAATTTAAAAGAATAAATTTAAATTTT
1 AGAATTTAATTAAAAAAG-AAATAATTAAAGGATAAATTAATTTAAAGGAATAAATTTAAATTTT
22418224 AAAAAAT
65 AAAAAAT
* *
22418231 AGAATTTAATTAAAAAATAAATAATTAATGGATAAA-TATATTTAAAGGAATAAATTTAAATTTT
1 AGAATTTAATTAAAAAAGAAATAATTAAAGGATAAATTA-ATTTAAAGGAATAAATTTAAATTTT
22418295 -AAAAAT
65 AAAAAAT
* *
22418301 AGAATTTAACT--AAAA-AAATAATTAAAGGATAAATCT-ATTTAAAGGAATAAATTCAAATTTT
1 AGAATTTAATTAAAAAAGAAATAATTAAAGGATAAAT-TAATTTAAAGGAATAAATTTAAATTTT
22418362 AAAAAAT
65 AAAAAAT
* *
22418369 AGAATTTAATAAAAGAAAGAAATAATTAAAGGGTAAATTAATTTAAAGGAATAAATTTAAA-TTT
1 AGAATTTAATTAAA-AAAGAAATAATTAAAGGATAAATTAATTTAAAGGAATAAATTTAAATTTT
22418433 AAAAAAT
65 AAAAAAT
*
22418440 AGAATTTAAATAAAAAAGAAATAATTAAAGGATAAATTAATTTAAA
1 AGAATTTAATTAAAAAAGAAATAATTAAAGGATAAATTAATTTAAA
22418486 TAAATAGAAA
Statistics
Matches: 230, Mismatches: 14, Indels: 22
0.86 0.05 0.08
Matches are distributed among these distances:
67 41 0.18
68 19 0.08
69 1 0.00
70 65 0.28
71 66 0.29
72 38 0.17
ACGTcount: A:0.58, C:0.01, G:0.09, T:0.32
Consensus pattern (71 bp):
AGAATTTAATTAAAAAAGAAATAATTAAAGGATAAATTAATTTAAAGGAATAAATTTAAATTTTA
AAAAAT
Found at i:22418435 original size:138 final size:139
Alignment explanation
Indices: 22418161--22418485 Score: 453
Period size: 138 Copynumber: 2.3 Consensus size: 139
22418151 CCTCAGTACC
* * *
22418161 AGAATTTAATTAAAAAGTAA-ATATTGAAGGATAAATTAATTTAAAAGAATAAATTTAAATTTTA
1 AGAATTTAAATAAAAA--AATA-ATTAAAGGATAAATTAATTTAAAAGAATAAATTCAAATTTTA
* * *
22418225 AAAAATAGAATTTAATTAAAAAATAAATAATTAATGGATAAATATATTTAAAGGAATAAATTTAA
63 AAAAATAGAATTTAATAAAAAAAGAAATAATTAAAGGATAAATATATTTAAAGGAATAAATTTAA
22418290 ATTTT-AAAAAT
128 ATTTTAAAAAAT
* *
22418301 AGAATTTAACTAAAAAAATAATTAAAGGATAAATCT-ATTTAAAGGAATAAATTCAAATTTTAAA
1 AGAATTTAAATAAAAAAATAATTAAAGGATAAAT-TAATTTAAAAGAATAAATTCAAATTTTAAA
*
22418365 AAATAGAATTTAATAAAAGAAAGAAATAATTAAAGGGTAAAT-TAATTTAAAGGAATAAATTTAA
65 AAATAGAATTTAATAAAA-AAAGAAATAATTAAAGGATAAATAT-ATTTAAAGGAATAAATTTAA
22418429 A-TTTAAAAAAT
128 ATTTTAAAAAAT
22418440 AGAATTTAAATAAAAAAGAAATAATTAAAGGATAAATTAATTTAAA
1 AGAATTTAAAT--AAAA-AAATAATTAAAGGATAAATTAATTTAAA
22418486 TAAATAGAAA
Statistics
Matches: 167, Mismatches: 9, Indels: 16
0.87 0.05 0.08
Matches are distributed among these distances:
138 62 0.37
139 59 0.35
140 15 0.09
141 5 0.03
142 26 0.16
ACGTcount: A:0.58, C:0.01, G:0.09, T:0.32
Consensus pattern (139 bp):
AGAATTTAAATAAAAAAATAATTAAAGGATAAATTAATTTAAAAGAATAAATTCAAATTTTAAAA
AATAGAATTTAATAAAAAAAGAAATAATTAAAGGATAAATATATTTAAAGGAATAAATTTAAATT
TTAAAAAAT
Found at i:22418512 original size:16 final size:16
Alignment explanation
Indices: 22418493--22418525 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
22418483 AAATAAATAG
22418493 AAATTAAAAAAAGAAA
1 AAATTAAAAAAAGAAA
*
22418509 AAATTAGAAAAAGAAA
1 AAATTAAAAAAAGAAA
22418525 A
1 A
22418526 GAGGATGAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.79, C:0.00, G:0.09, T:0.12
Consensus pattern (16 bp):
AAATTAAAAAAAGAAA
Found at i:22418513 original size:36 final size:36
Alignment explanation
Indices: 22418433--22418514 Score: 85
Period size: 36 Copynumber: 2.2 Consensus size: 36
22418423 ATTTAAATTT
* **
22418433 AAAAAATAGAATTTAAATAAAAAAGAAATAATTAAAG
1 AAAAAAT-TAATTTAAATAAAAAAGAAATAAAAAAAG
* * *
22418470 GATAAATTAATTTAAAT-AAATAGAAATTAAAAAAAG
1 AAAAAATTAATTTAAATAAAAAAGAAA-TAAAAAAAG
22418506 AAAAAATTA
1 AAAAAATTA
22418515 GAAAAAGAAA
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
35 8 0.22
36 23 0.64
37 5 0.14
ACGTcount: A:0.68, C:0.00, G:0.07, T:0.24
Consensus pattern (36 bp):
AAAAAATTAATTTAAATAAAAAAGAAATAAAAAAAG
Found at i:22418527 original size:139 final size:138
Alignment explanation
Indices: 22418161--22418527 Score: 342
Period size: 138 Copynumber: 2.6 Consensus size: 138
22418151 CCTCAGTACC
* * ** *
22418161 AGAATTTAATTAAAAAGTAA-ATATTGAAGGATAAAT-TAATTTAAAAGAATAAATTTAAATTTT
1 AGAATTTAAATAAAAA--AATA-ATTAAAGGATAAATCT-ATTT--AAGAATAAATACAAATTTA
* * * * * *
22418224 AAAAAATAGAATTTAAT-TAA-AAAATAAATAATTAATGGATAAATATATTTAAAGGAATAAATT
60 AAAAAAAAAAAATTAATAAAAGAAAAGAAATAATTAAAGGATAAATATATTTAAAGGAATAAATT
*
22418287 TAAATTTTAAAAAT
125 TAAATTTAAAAAAT
* * *
22418301 AGAATTTAACTAAAAAAATAATTAAAGGATAAATCTATTTAAAGGAATAAATTCAAATTTTAAAA
1 AGAATTTAAATAAAAAAATAATTAAAGGATAAATCTATTT-AA-GAATAAATACAAATTTAAAAA
* * * *
22418366 AATAGAATTTAATAAAAG-AAAGAAATAATTAAAGGGTAAAT-TAATTTAAAGGAATAAATTTAA
64 AAAAAAAATTAATAAAAGAAAAGAAATAATTAAAGGATAAATAT-ATTTAAAGGAATAAATTTAA
22418429 ATTTAAAAAAT
128 ATTTAAAAAAT
*
22418440 AGAATTTAAATAAAAAAGAAATAATTAAAGGATAAAT-TAATTT-A-AATAAATAGAAA-TTAAA
1 AGAATTTAAAT--AAAA-AAATAATTAAAGGATAAATCT-ATTTAAGAATAAATACAAATTTAAA
22418501 AAAAGAAAAAATTAGA-AAAAGAAAAGA
62 AAAA-AAAAAATTA-ATAAAAGAAAAGA
22418528 GGATGAGAAT
Statistics
Matches: 199, Mismatches: 15, Indels: 27
0.83 0.06 0.11
Matches are distributed among these distances:
137 11 0.06
138 74 0.37
139 70 0.35
140 16 0.08
141 5 0.03
142 23 0.12
ACGTcount: A:0.60, C:0.01, G:0.09, T:0.30
Consensus pattern (138 bp):
AGAATTTAAATAAAAAAATAATTAAAGGATAAATCTATTTAAGAATAAATACAAATTTAAAAAAA
AAAAAATTAATAAAAGAAAAGAAATAATTAAAGGATAAATATATTTAAAGGAATAAATTTAAATT
TAAAAAAT
Found at i:22418644 original size:10 final size:10
Alignment explanation
Indices: 22418629--22418662 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
22418619 AAAGAATTCC
22418629 TTTAAAATTT
1 TTTAAAATTT
22418639 TTTAAAATTT
1 TTTAAAATTT
22418649 CTTT-AAATTT
1 -TTTAAAATTT
22418659 TTTA
1 TTTA
22418663 TTATTCTGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
9 3 0.14
10 16 0.73
11 3 0.14
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (10 bp):
TTTAAAATTT
Found at i:22418652 original size:21 final size:20
Alignment explanation
Indices: 22418623--22418662 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
22418613 TTTTTAAAAG
22418623 AATTCCTTTAAAATTTTTTAA
1 AATTCCTTT-AAATTTTTTAA
*
22418644 AATTTCTTTAAATTTTTTA
1 AATTCCTTTAAATTTTTTA
22418663 TTATTCTGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.57
Consensus pattern (20 bp):
AATTCCTTTAAATTTTTTAA
Found at i:22418653 original size:11 final size:11
Alignment explanation
Indices: 22418623--22418655 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
22418613 TTTTTAAAAG
*
22418623 AATTCCTTTAA
1 AATTTCTTTAA
22418634 AATTT-TTTAA
1 AATTTCTTTAA
22418644 AATTTCTTTAA
1 AATTTCTTTAA
22418655 A
1 A
22418656 TTTTTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.39, C:0.09, G:0.00, T:0.52
Consensus pattern (11 bp):
AATTTCTTTAA
Found at i:22419142 original size:25 final size:26
Alignment explanation
Indices: 22419099--22419149 Score: 95
Period size: 25 Copynumber: 2.0 Consensus size: 26
22419089 ATACAAACTT
22419099 AAACCACAAGAATGAAGGAAAATACA
1 AAACCACAAGAATGAAGGAAAATACA
22419125 AAACCACAA-AATGAAGGAAAATACA
1 AAACCACAAGAATGAAGGAAAATACA
22419150 TGAAAGCTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.63, C:0.16, G:0.14, T:0.08
Consensus pattern (26 bp):
AAACCACAAGAATGAAGGAAAATACA
Found at i:22425033 original size:24 final size:24
Alignment explanation
Indices: 22425004--22425064 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
22424994 TAGTCCTTTT
* * *
22425004 TTATTATTCTTGTTATC-TTATTGA
1 TTATTATTATTATCATCATTATT-A
22425028 TTATTATTATTATCATCATTATTA
1 TTATTATTATTATCATCATTATTA
22425052 TTATTATTATTAT
1 TTATTATTATTAT
22425065 ATTTCTATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.62
Consensus pattern (24 bp):
TTATTATTATTATCATCATTATTA
Found at i:22425035 original size:3 final size:3
Alignment explanation
Indices: 22425021--22425064 Score: 61
Period size: 3 Copynumber: 14.3 Consensus size: 3
22425011 TCTTGTTATC
* *
22425021 TTA TTGA TTA TTA TTA TTA TCA TCA TTA TTA TTA TTA TTA TTA T
1 TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
22425065 ATTTCTATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:22425051 original size:21 final size:20
Alignment explanation
Indices: 22425004--22425061 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 20
22424994 TAGTCCTTTT
* * *
22425004 TTATTATTCTTGTTATCTTA
1 TTATTATTATTATTATCTCA
22425024 TTGATTATTATTATTATCATCA
1 TT-ATTATTATTATTATC-TCA
22425046 TTATTATTATTATTAT
1 TTATTATTATTATTAT
22425062 TATATTTCTA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 2 0.06
21 27 0.82
22 4 0.12
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.62
Consensus pattern (20 bp):
TTATTATTATTATTATCTCA
Found at i:22425708 original size:72 final size:71
Alignment explanation
Indices: 22425591--22425733 Score: 259
Period size: 72 Copynumber: 2.0 Consensus size: 71
22425581 TCTTTTCAAA
* *
22425591 CTCAAGTTTTAAACGATCTCGGGAATTAAGAAGAGATCGTGTCCTAACTTACTGGGCATGATCCC
1 CTCAAGTTTTAAACGATCTCGGGAATTAAGAAAAGATCGCGTCCTAACTTACTGGGCATGATCCC
22425656 ATTTTTT
66 -TTTTTT
22425663 CTCAAGTTTTAAACGATCTCGGGAATTAAGAAAAGATCGCGTCCTAACTTACTGGGCATGATCCC
1 CTCAAGTTTTAAACGATCTCGGGAATTAAGAAAAGATCGCGTCCTAACTTACTGGGCATGATCCC
22425728 TTTTTT
66 TTTTTT
22425734 AAATCCGAGA
Statistics
Matches: 69, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
71 6 0.09
72 63 0.91
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (71 bp):
CTCAAGTTTTAAACGATCTCGGGAATTAAGAAAAGATCGCGTCCTAACTTACTGGGCATGATCCC
TTTTTT
Found at i:22429801 original size:2 final size:2
Alignment explanation
Indices: 22429794--22429846 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
22429784 TAGAAGGGAA
22429794 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
22429836 AG AG AG AG AG A
1 AG AG AG AG AG A
22429847 ATATTTGAGA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:22436941 original size:37 final size:37
Alignment explanation
Indices: 22436891--22436969 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
22436881 TTATTACGAA
* *
22436891 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
22436928 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
22436965 GTCTT
1 GTCTT
22436970 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:22437166 original size:47 final size:47
Alignment explanation
Indices: 22437088--22437570 Score: 691
Period size: 47 Copynumber: 10.5 Consensus size: 47
22437078 CCCTTCGGGA
* * * * * * * *
22437088 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
22437135 CCTGTCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
22437182 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
22437229 CTTATCACACATAT--A----CAC-TT--TCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
22437267 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
22437314 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
22437361 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
22437410 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
22437457 CTTATCACACATATACACATTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
22437504 CTTATCAC--ACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
22437549 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
22437571 TTGGCTGAAT
Statistics
Matches: 400, Mismatches: 23, Indels: 26
0.89 0.05 0.06
Matches are distributed among these distances:
38 32 0.08
40 3 0.01
41 3 0.01
44 3 0.01
45 45 0.11
47 268 0.67
49 46 0.12
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:22437411 original size:96 final size:94
Alignment explanation
Indices: 22437249--22437570 Score: 549
Period size: 96 Copynumber: 3.4 Consensus size: 94
22437239 ATATACACTT
*
22437249 TCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 TCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
22437314 CTTATCACACATATACACTTTCACATTCA
66 CTTATCACACATATACACTTTCACATTCA
* *
22437343 TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAG
1 TCACATCGGCCATTAGGCCTTATCAC--ACATATACACTTTCACATTCATCACATCGGCTATTAG
*
22437408 GCCTTATCACATATATACACTTTCACATTCA
64 GCCTTATCACACATATACACTTTCACATTCA
* *
22437439 TCACATCGGCTATTAGGCCTTATCACACATATACACATTCACATTCATCACATCGGCTATTAGGC
1 TCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
22437504 CTTATCACAC--ATACACTTTCACATTCA
66 CTTATCACACATATACACTTTCACATTCA
*
22437531 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
1 TCACATCGGCCATTAGGCCTTATCACACATATACACTTTC
22437571 TTGGCTGAAT
Statistics
Matches: 214, Mismatches: 12, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
92 54 0.25
94 70 0.33
96 90 0.42
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (94 bp):
TCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
CTTATCACACATATACACTTTCACATTCA
Found at i:22437424 original size:143 final size:139
Alignment explanation
Indices: 22437249--22437570 Score: 563
Period size: 143 Copynumber: 2.3 Consensus size: 139
22437239 ATATACACTT
* *
22437249 TCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
22437314 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
66 CTTATCACACATATACACATTCACATTCATCACATCGGCCATTAGGCCTTATCAC----ACATAC
22437379 ACTTTCACATTCA
127 ACTTTCACATTCA
22437392 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
22437457 CTTATCACACATATACACATTCACATTCATCACATCGGCTATTAGGCCTTATCACACATACACTT
66 CTTATCACACATATACACATTCACATTCATCACATCGGCCATTAGGCCTTATCACACATACACTT
22437522 TCACATTCA
131 TCACATTCA
22437531 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
1 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
22437571 TTGGCTGAAT
Statistics
Matches: 174, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
139 58 0.33
143 116 0.67
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (139 bp):
TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
CTTATCACACATATACACATTCACATTCATCACATCGGCCATTAGGCCTTATCACACATACACTT
TCACATTCA
Found at i:22441210 original size:20 final size:21
Alignment explanation
Indices: 22441169--22441212 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
22441159 AAATCAAGTT
*
22441169 TTATACTTAACATTTCATAAC
1 TTATACTTAAAATTTCATAAC
22441190 TTATA-TTAAAATTTCCA-AAC
1 TTATACTTAAAATTT-CATAAC
22441210 TTA
1 TTA
22441213 CAAAATTAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.41, C:0.16, G:0.00, T:0.43
Consensus pattern (21 bp):
TTATACTTAAAATTTCATAAC
Found at i:22443174 original size:31 final size:30
Alignment explanation
Indices: 22443138--22443199 Score: 74
Period size: 31 Copynumber: 2.0 Consensus size: 30
22443128 ATTTTTAATT
*
22443138 AATTTA-TCATCTTT-TATTATTTCATCTTTCC
1 AATTTATTCAT-TTTCT-TTATTTAAT-TTTCC
22443169 AATTTATTCATTTTCTTTATTTAATTTTCC
1 AATTTATTCATTTTCTTTATTTAATTTTCC
22443199 A
1 A
22443200 TTGATGAATC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
30 6 0.21
31 17 0.61
32 5 0.18
ACGTcount: A:0.24, C:0.16, G:0.00, T:0.60
Consensus pattern (30 bp):
AATTTATTCATTTTCTTTATTTAATTTTCC
Found at i:22446364 original size:25 final size:26
Alignment explanation
Indices: 22446335--22446458 Score: 116
Period size: 27 Copynumber: 4.8 Consensus size: 26
22446325 GCGATCCAAT
*
22446335 ATCGGGAAGCTC-TGAAGAGCCATGA
1 ATCGGGAAGCTCATGAAGAGCCATTA
* *
22446360 ATCGGAAAGCTCATGAAAAAG-CATTTA
1 ATCGGGAAGCTCATG-AAGAGCCA-TTA
* *
22446387 ATCGGGAAGCTCATGAAATAGCCTTTA
1 ATCGGGAAGCTCATG-AAGAGCCATTA
22446414 ATCGGGAAGCTCCA-G-AGAGCCAATT-
1 ATCGGGAAGCT-CATGAAGAGCC-ATTA
22446439 ATCGGGAAGCTCAT-AAGAGC
1 ATCGGGAAGCTCATGAAGAGC
22446459 TGTGATGTGT
Statistics
Matches: 83, Mismatches: 8, Indels: 16
0.78 0.07 0.15
Matches are distributed among these distances:
24 2 0.02
25 32 0.39
26 6 0.07
27 40 0.48
28 3 0.04
ACGTcount: A:0.35, C:0.19, G:0.26, T:0.19
Consensus pattern (26 bp):
ATCGGGAAGCTCATGAAGAGCCATTA
Found at i:22446554 original size:25 final size:24
Alignment explanation
Indices: 22446497--22446556 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
22446487 CACAACCAAT
* *
22446497 CGGGAAGCTCAAAAGAGCTATTAA
1 CGGGAAGCTCGAAAGAACTATTAA
* *
22446521 TGGGAAGCTCGCAAGAACTATATAA
1 CGGGAAGCTCGAAAGAACTAT-TAA
22446546 CGGGAAGCTCG
1 CGGGAAGCTCG
22446557 TGAGAGCCAA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 17 0.57
25 13 0.43
ACGTcount: A:0.37, C:0.18, G:0.28, T:0.17
Consensus pattern (24 bp):
CGGGAAGCTCGAAAGAACTATTAA
Found at i:22450687 original size:13 final size:13
Alignment explanation
Indices: 22450671--22450723 Score: 63
Period size: 13 Copynumber: 4.1 Consensus size: 13
22450661 TTTAAACCAA
22450671 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
* *
22450684 ACTTTTTTACAA-C
1 AC-TTTTCAAAAGC
22450697 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
22450710 GCTTTTCAAAAGC
1 ACTTTTCAAAAGC
22450723 A
1 A
22450724 ATGAAGAACT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
12 7 0.22
13 18 0.56
14 7 0.22
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.34
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:22450689 original size:26 final size:26
Alignment explanation
Indices: 22450660--22450715 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
22450650 AACACTTAAA
22450660 TTTTAAACCAA-ACTTTTCAAAAGCAC
1 TTTTAAA-CAACACTTTTCAAAAGCAC
** *
22450686 TTTTTTACAACACTTTTCAAAAGCGC
1 TTTTAAACAACACTTTTCAAAAGCAC
22450712 TTTT
1 TTTT
22450716 CAAAAGCAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.34, C:0.21, G:0.05, T:0.39
Consensus pattern (26 bp):
TTTTAAACAACACTTTTCAAAAGCAC
Found at i:22455143 original size:33 final size:33
Alignment explanation
Indices: 22455106--22455199 Score: 91
Period size: 33 Copynumber: 2.8 Consensus size: 33
22455096 TGGCCCTGCC
* * *
22455106 ATGGTCTTACATTTGTAGTGCCATAACCTAGTT
1 ATGGTCTTACATTTGTAATGCCATAACCCAGCT
** *
22455139 ATGGTCTTATCATCAG-AATGCCATAGCCCAGCT
1 ATGGTCTTA-CATTTGTAATGCCATAACCCAGCT
* *
22455172 ATGGTCTTACATTTTGTATTGTCATAAC
1 ATGGTCTTACA-TTTGTAATGCCATAAC
22455200 TCAATTATGT
Statistics
Matches: 47, Mismatches: 11, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
32 2 0.04
33 33 0.70
34 12 0.26
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (33 bp):
ATGGTCTTACATTTGTAATGCCATAACCCAGCT
Found at i:22455214 original size:67 final size:66
Alignment explanation
Indices: 22455106--22455249 Score: 200
Period size: 67 Copynumber: 2.2 Consensus size: 66
22455096 TGGCCCTGCC
* *
22455106 ATGGTCTTACATTTGTAGTGCCATAACCTAGTTATGGTCTTATCATCAGAATGCCATAGCCCAGC
1 ATGGTCTTACATTTGTAGTGCCATAACCTAATTATGGTCTTATCATCAAAATGCCATAGCCCAGC
22455171 T
66 T
* * * *
22455172 ATGGTCTTACATTTTGTATTGTCATAA-CTCAATTATGTTCTTATCATCAAAATGTCATAGCCCA
1 ATGGTCTTACA-TTTGTAGTGCCATAACCT-AATTATGGTCTTATCATCAAAATGCCATAGCCCA
22455236 GCT
64 GCT
*
22455239 GTGGTCTTACA
1 ATGGTCTTACA
22455250 CATGTATCTA
Statistics
Matches: 69, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
66 13 0.19
67 56 0.81
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (66 bp):
ATGGTCTTACATTTGTAGTGCCATAACCTAATTATGGTCTTATCATCAAAATGCCATAGCCCAGC
T
Found at i:22457528 original size:17 final size:17
Alignment explanation
Indices: 22457506--22457538 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
22457496 TTTACGTTTG
22457506 TTACAATATT-AATTTAT
1 TTACAA-ATTAAATTTAT
22457523 TTACAAATTAAATTTA
1 TTACAAATTAAATTTA
22457539 CTATTGTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (17 bp):
TTACAAATTAAATTTAT
Found at i:22464197 original size:43 final size:43
Alignment explanation
Indices: 22464148--22464236 Score: 178
Period size: 43 Copynumber: 2.1 Consensus size: 43
22464138 AATAAAGAAA
22464148 ATTAAACCAATTTCTTAGAAGCCAAGCCATACAAAAAACAAGC
1 ATTAAACCAATTTCTTAGAAGCCAAGCCATACAAAAAACAAGC
22464191 ATTAAACCAATTTCTTAGAAGCCAAGCCATACAAAAAACAAGC
1 ATTAAACCAATTTCTTAGAAGCCAAGCCATACAAAAAACAAGC
22464234 ATT
1 ATT
22464237 CATATACCTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.48, C:0.22, G:0.09, T:0.20
Consensus pattern (43 bp):
ATTAAACCAATTTCTTAGAAGCCAAGCCATACAAAAAACAAGC
Found at i:22471555 original size:45 final size:45
Alignment explanation
Indices: 22471500--22471712 Score: 239
Period size: 45 Copynumber: 4.7 Consensus size: 45
22471490 CCGGAAACGT
* * *
22471500 GTAAGACCATGACTAAAAGACGTTATGTCATTACAATTCTATCGA
1 GTAAGACCATGACTGAAAGACGTTATGGCATCACAATTCTATCGA
* * ** *
22471545 GTAAAACCATGACTGAAAGATGTTATGGCATCATGATTCTATTGA
1 GTAAGACCATGACTGAAAGACGTTATGGCATCACAATTCTATCGA
** ** *
22471590 GTAAGACTGTGACTGAAAGACGTTATGGCATCATGATTCTATCAA
1 GTAAGACCATGACTGAAAGACGTTATGGCATCACAATTCTATCGA
* * * *
22471635 ATAAGACCATGATTGAAAGACGTTATGGCATCACAATCCTATTGA
1 GTAAGACCATGACTGAAAGACGTTATGGCATCACAATTCTATCGA
* *
22471680 GTAAAACCAT-AGCTGAAAGACGCTATGGCATCA
1 GTAAGACCATGA-CTGAAAGACGTTATGGCATCA
22471713 TGAATCAAAG
Statistics
Matches: 140, Mismatches: 27, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
44 1 0.01
45 139 0.99
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (45 bp):
GTAAGACCATGACTGAAAGACGTTATGGCATCACAATTCTATCGA
Found at i:22471713 original size:90 final size:90
Alignment explanation
Indices: 22471500--22471754 Score: 262
Period size: 90 Copynumber: 2.8 Consensus size: 90
22471490 CCGGAAACGT
* * * * * ** * * * *
22471500 GTAAGACCATGACTAAAAGACGTTATGTCATTACAATTCTATCGAGTAAAACCATGACTGAAAGA
1 GTAAAACCATGACTGAAAGACGCTATGGCATCATGATTCTATCAAATAAGACCATGATTGAAAGA
** *
22471565 TGTTATGGCATCATGATTCTATTGA
66 TGTTATGGCATCACAATCCTATTGA
* ** *
22471590 GTAAGACTGTGACTGAAAGACGTTATGGCATCATGATTCTATCAAATAAGACCATGATTGAAAGA
1 GTAAAACCATGACTGAAAGACGCTATGGCATCATGATTCTATCAAATAAGACCATGATTGAAAGA
*
22471655 CGTTATGGCATCACAATCCTATTGA
66 TGTTATGGCATCACAATCCTATTGA
* * **
22471680 GTAAAACCAT-AGCTGAAAGACGCTATGGCATCATGAATCAAAGAAATAAGACCAT-AGTTGAAA
1 GTAAAACCATGA-CTGAAAGACGCTATGGCATCATGATTCTATCAAATAAGACCATGA-TTGAAA
*
22471743 GATATTATGGCA
64 GATGTTATGGCA
22471755 AGAAGATGAA
Statistics
Matches: 138, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
89 2 0.01
90 136 0.99
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (90 bp):
GTAAAACCATGACTGAAAGACGCTATGGCATCATGATTCTATCAAATAAGACCATGATTGAAAGA
TGTTATGGCATCACAATCCTATTGA
Found at i:22471734 original size:45 final size:45
Alignment explanation
Indices: 22471557--22471837 Score: 146
Period size: 45 Copynumber: 6.2 Consensus size: 45
22471547 AAAACCATGA
* * * * **
22471557 CTGAAAGATGTTATGGCATCATGATTCTATTG-AGTAAGACTGT-G
1 CTGAAAGACGTTATGGCATCATGAATC-AATGAAATAAGACCATAG
* * *
22471601 ACTGAAAGACGTTATGGCATCATGATTCTATCAAATAAGACCAT-G
1 -CTGAAAGACGTTATGGCATCATGAATCAATGAAATAAGACCATAG
* * * * *
22471646 ATTGAAAGACGTTATGGCATCA-CAATCCTATTG-AGTAAAACCATAG
1 -CTGAAAGACGTTATGGCATCATGAAT-C-AATGAAATAAGACCATAG
* *
22471692 CTGAAAGACGCTATGGCATCATGAATCAAAGAAATAAGACCATAG
1 CTGAAAGACGTTATGGCATCATGAATCAATGAAATAAGACCATAG
* ** ** ** * *
22471737 TTGAAAGATATTATGGCAAGAAGATGAAAAAAAG-AATAAGACCATGG
1 CTGAAAGACGTTATGGC---ATCATGAATCAATGAAATAAGACCATAG
* * * *
22471784 TTGAAAGACATTATGGCATCAAGACGA-GAAT-AAATAAGACCATAG
1 CTGAAAGACGTTATGGCATCATGA--ATCAATGAAATAAGACCATAG
*
22471829 TTGAAAGAC
1 CTGAAAGAC
22471838 ACCATGGCAC
Statistics
Matches: 186, Mismatches: 38, Indels: 24
0.75 0.15 0.10
Matches are distributed among these distances:
44 9 0.05
45 133 0.72
46 6 0.03
47 28 0.15
48 10 0.05
ACGTcount: A:0.42, C:0.14, G:0.21, T:0.24
Consensus pattern (45 bp):
CTGAAAGACGTTATGGCATCATGAATCAATGAAATAAGACCATAG
Found at i:22471742 original size:135 final size:135
Alignment explanation
Indices: 22471501--22471754 Score: 307
Period size: 135 Copynumber: 1.9 Consensus size: 135
22471491 CGGAAACGTG
* * * *
22471501 TAAGACCATGACTAAAAGACGTTATGTCATTACAATTCTATCGAGTAAAACCATGACTGAAAGAT
1 TAAGACCATGACTAAAAGACGTTATGGCATCACAATCCTATCGAGTAAAACCATGACTGAAAGAC
* * ** * ** *
22471566 GTTATGGCATCATGATTCTATTGAGTAAGACTGTGACTGAAAGACGTTATGGCATCATGATTCTA
66 GCTATGGCATCATGAATCTAAAGAATAAGACCATGACTGAAAGACATTATGGCATCATGATTCTA
22471631 TCAAA
131 TCAAA
* * *
22471636 TAAGACCATGATTGAAAGACGTTATGGCATCACAATCCTATTGAGTAAAACCAT-AGCTGAAAGA
1 TAAGACCATGACTAAAAGACGTTATGGCATCACAATCCTATCGAGTAAAACCATGA-CTGAAAGA
* *
22471700 CGCTATGGCATCATGAATC-AAAGAAATAAGACCAT-AGTTGAAAGATATTATGGCA
65 CGCTATGGCATCATGAATCTAAAG-AATAAGACCATGA-CTGAAAGACATTATGGCA
22471755 AGAAGATGAA
Statistics
Matches: 99, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
134 4 0.04
135 95 0.96
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.27
Consensus pattern (135 bp):
TAAGACCATGACTAAAAGACGTTATGGCATCACAATCCTATCGAGTAAAACCATGACTGAAAGAC
GCTATGGCATCATGAATCTAAAGAATAAGACCATGACTGAAAGACATTATGGCATCATGATTCTA
TCAAA
Found at i:22471846 original size:45 final size:46
Alignment explanation
Indices: 22471723--22471838 Score: 153
Period size: 47 Copynumber: 2.5 Consensus size: 46
22471713 TGAATCAAAG
* * *
22471723 AAATAAGACCATAGTTGAAAGATATTATGGCAAGAAGATGAAAAAA
1 AAATAAGACCATAGTTGAAAGACATTATGGCAACAAGACGAAAAAA
* * * *
22471769 AGAATAAGACCATGGTTGAAAGACATTATGGCATCAAGACG-AGAAT
1 A-AATAAGACCATAGTTGAAAGACATTATGGCAACAAGACGAAAAAA
22471815 AAATAAGACCATAGTTGAAAGACA
1 AAATAAGACCATAGTTGAAAGACA
22471839 CCATGGCACA
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
45 22 0.36
46 5 0.08
47 34 0.56
ACGTcount: A:0.50, C:0.10, G:0.21, T:0.19
Consensus pattern (46 bp):
AAATAAGACCATAGTTGAAAGACATTATGGCAACAAGACGAAAAAA
Found at i:22474996 original size:37 final size:36
Alignment explanation
Indices: 22474945--22475036 Score: 98
Period size: 37 Copynumber: 2.4 Consensus size: 36
22474935 ATTCCAAAAA
*
22474945 TAATATTATTTTAATAGT-TTAATATTAGATTTAAT-T
1 TAATATTATCTTAATAGTATT-ATATTA-ATTTAATAT
*
22474981 TAATACTTATCTTAATAGTATTTTATTAATTTAATAT
1 TAATA-TTATCTTAATAGTATTATATTAATTTAATAT
22475018 TAAAGTGATTATCTTAATA
1 T-AA-T-ATTATCTTAATA
22475037 TTAAATTTAA
Statistics
Matches: 48, Mismatches: 2, Indels: 9
0.81 0.03 0.15
Matches are distributed among these distances:
36 12 0.25
37 19 0.40
38 4 0.08
39 12 0.25
40 1 0.02
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.52
Consensus pattern (36 bp):
TAATATTATCTTAATAGTATTATATTAATTTAATAT
Found at i:22479453 original size:43 final size:44
Alignment explanation
Indices: 22479372--22479508 Score: 122
Period size: 43 Copynumber: 3.2 Consensus size: 44
22479362 CACTAACTTG
** * * *
22479372 TGTAAGACCACATC-GGGAC-GTTGGAATCGATTTGAGATTTACA
1 TGTAAGACCATGTCTGGGACAG-TGGCATCGATATAAGATTTACA
* * *
22479415 TGTAAGACCATGTCTGGGACATTGGTATCG-TATAAGATTT-CG
1 TGTAAGACCATGTCTGGGACAGTGGCATCGATATAAGATTTACA
* * **
22479457 TGTAAGACCCTGTCTGGGATAGTGGCATCGATATTGGA-TTACA
1 TGTAAGACCATGTCTGGGACAGTGGCATCGATATAAGATTTACA
22479500 TGTAAGACC
1 TGTAAGACC
22479509 TCGTATGGGG
Statistics
Matches: 76, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
42 29 0.38
43 35 0.46
44 12 0.16
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACAGTGGCATCGATATAAGATTTACA
Found at i:22481921 original size:15 final size:15
Alignment explanation
Indices: 22481903--22481932 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
22481893 TTTACTATTA
*
22481903 TGTCTTTTGTATTTT
1 TGTCTTTTATATTTT
22481918 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
22481933 GCATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.07, G:0.10, T:0.73
Consensus pattern (15 bp):
TGTCTTTTATATTTT
Found at i:22491103 original size:53 final size:53
Alignment explanation
Indices: 22491014--22491124 Score: 154
Period size: 53 Copynumber: 2.1 Consensus size: 53
22491004 TACCACTAAA
* * *
22491014 TGTAACACCCTAACCCATCTCCATCGTCGAATTAGAGTTACAGAGTATTA-TG
1 TGTAACACCCTAACCCATATCCATCGTCGAATTAGAGTTACAAAGCATTACTG
*
22491066 TGTAACACCCCTAACCCATATCCATTGTCGGAA-TAGAGTTACAAAGCATTACTG
1 TGTAACA-CCCTAACCCATATCCATCGTC-GAATTAGAGTTACAAAGCATTACTG
22491120 TGTAA
1 TGTAA
22491125 ATGCCTCTTA
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
52 7 0.13
53 35 0.67
54 10 0.19
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.28
Consensus pattern (53 bp):
TGTAACACCCTAACCCATATCCATCGTCGAATTAGAGTTACAAAGCATTACTG
Found at i:22494841 original size:35 final size:35
Alignment explanation
Indices: 22494797--22494865 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 35
22494787 GGAGCACCCA
*
22494797 ATGTAAGCGAGATATGGTTCACAGCCTTTTTAACT
1 ATGTAAGCGAGATATGCTTCACAGCCTTTTTAACT
*
22494832 ATGTTAGCGAGATATGCTTCACAGCCTTTTTAAC
1 ATGTAAGCGAGATATGCTTCACAGCCTTTTTAAC
22494866 ATATTTTTGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35
Consensus pattern (35 bp):
ATGTAAGCGAGATATGCTTCACAGCCTTTTTAACT
Found at i:22496703 original size:82 final size:81
Alignment explanation
Indices: 22496587--22496742 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
22496577 AAATTGTACA
* * * *
22496587 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
22496651 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
22496668 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
22496733 TGCGAGTTGA
65 TGCGAATTGA
22496743 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:22496710 original size:55 final size:52
Alignment explanation
Indices: 22496586--22496739 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
22496576 TAAATTGTAC
* *
22496586 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
22496639 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
22496694 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
22496740 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:22496744 original size:27 final size:27
Alignment explanation
Indices: 22496587--22496742 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
22496577 AAATTGTACA
*
22496587 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
22496614 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
22496641 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
22496668 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
22496696 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
22496723 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
22496743 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:22496753 original size:27 final size:27
Alignment explanation
Indices: 22496579--22496763 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
22496569 GCGGGATTAA
*
22496579 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
22496606 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
22496633 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
22496660 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
22496688 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
22496715 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
22496742 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
22496764 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:22496754 original size:82 final size:81
Alignment explanation
Indices: 22496579--22496763 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
22496569 GCGGGATTAA
* * * *
22496579 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
22496644 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
22496660 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
22496724 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
22496742 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
22496764 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:22497872 original size:20 final size:20
Alignment explanation
Indices: 22497847--22497889 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
22497837 GAGATATCCA
22497847 AGTCGTAATGGGCAAAGGTC
1 AGTCGTAATGGGCAAAGGTC
22497867 AGTCGTAATGGGCAAAGGTC
1 AGTCGTAATGGGCAAAGGTC
22497887 AGT
1 AGT
22497890 GTAGTCGACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.14, G:0.35, T:0.21
Consensus pattern (20 bp):
AGTCGTAATGGGCAAAGGTC
Found at i:22504484 original size:60 final size:57
Alignment explanation
Indices: 22504370--22504494 Score: 189
Period size: 60 Copynumber: 2.2 Consensus size: 57
22504360 ATGCTGATTG
* * *
22504370 GAATG-AAAATGCATAATATGTATATGCATGTAGTATGTGCTATGAAATTGTTGAAT
1 GAATGAAAAATACATAATATATATATGCATGTAGTATGTGATATGAAATTGTTGAAT
22504426 GAATGAAAAATACATATATATATATATGCATGTACGTATGTGATGATGAAATTGTTGAAT
1 GAATGAAAAATACATA-ATATATATATGCATGTA-GTATGTGAT-ATGAAATTGTTGAAT
22504486 GAATGAAAA
1 GAATGAAAA
22504495 GAGGTAAGAT
Statistics
Matches: 62, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
56 5 0.08
57 9 0.15
58 16 0.26
59 8 0.13
60 24 0.39
ACGTcount: A:0.42, C:0.05, G:0.20, T:0.34
Consensus pattern (57 bp):
GAATGAAAAATACATAATATATATATGCATGTAGTATGTGATATGAAATTGTTGAAT
Found at i:22504711 original size:82 final size:81
Alignment explanation
Indices: 22504595--22504750 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
22504585 AAATTGTACA
* * * *
22504595 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
22504659 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
22504676 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
22504741 TGCGAGTTGA
65 TGCGAATTGA
22504751 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:22504718 original size:55 final size:52
Alignment explanation
Indices: 22504594--22504747 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
22504584 TAAATTGTAC
* *
22504594 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
22504647 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
22504702 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
22504748 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:22504752 original size:27 final size:27
Alignment explanation
Indices: 22504595--22504750 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
22504585 AAATTGTACA
*
22504595 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
22504622 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
22504649 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
22504676 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
22504704 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
22504731 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
22504751 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:22504761 original size:27 final size:27
Alignment explanation
Indices: 22504587--22504771 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
22504577 GCGGGATTAA
*
22504587 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
22504614 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
22504641 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
22504668 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
22504696 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
22504723 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
22504750 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
22504772 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:22504762 original size:82 final size:81
Alignment explanation
Indices: 22504587--22504771 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
22504577 GCGGGATTAA
* * * *
22504587 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
22504652 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
22504668 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
22504732 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
22504750 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
22504772 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:22507427 original size:42 final size:40
Alignment explanation
Indices: 22507366--22507457 Score: 112
Period size: 42 Copynumber: 2.2 Consensus size: 40
22507356 CACACGGCTA
**
22507366 AGCCACACACCCGTATGCTAGGCTGTGTAAATCTCGAAAT
1 AGCCACACACCCGTATGCTAGGCCATGTAAATCTCGAAAT
* * *
22507406 AGCCACACACATCCGTGTGCTAGGCCATGTAACTCTCGTAAT
1 AGCCACACAC--CCGTATGCTAGGCCATGTAAATCTCGAAAT
*
22507448 AGCCTCACAC
1 AGCCACACAC
22507458 GCCTGTGTAC
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
40 10 0.23
42 34 0.77
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.22
Consensus pattern (40 bp):
AGCCACACACCCGTATGCTAGGCCATGTAAATCTCGAAAT
Found at i:22507473 original size:42 final size:42
Alignment explanation
Indices: 22507391--22507473 Score: 96
Period size: 42 Copynumber: 2.0 Consensus size: 42
22507381 TGCTAGGCTG
* * *
22507391 TGTAAATCTCGAAATAGCCACACACATCCGTGTGCTAGGCCA
1 TGTAAATCTCGAAATAGCCACACACAGCCGTGTACCAGGCCA
* * *
22507433 TGTAACTCTCGTAATAGCCTCACAC-GCCTGTGTACCAGGCC
1 TGTAAATCTCGAAATAGCCACACACAGCC-GTGTACCAGGCC
22507474 GTGTGCTAGG
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
41 2 0.06
42 32 0.94
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (42 bp):
TGTAAATCTCGAAATAGCCACACACAGCCGTGTACCAGGCCA
Found at i:22508552 original size:41 final size:41
Alignment explanation
Indices: 22508376--22508563 Score: 187
Period size: 41 Copynumber: 4.6 Consensus size: 41
22508366 AGTGTAAACC
* * ** ** * *
22508376 GGGGCACATATGTGTAGTTCGGGGGTTTCGAAGTACGAACA
1 GGGGCACGTATGTGTAATTTAGGGGTACCGAAGTACAAATA
* * * * * * *
22508417 GGGGCACGAATATGCAATTTAAGGGTACTGACGTACAAACA
1 GGGGCACGTATGTGTAATTTAGGGGTACCGAAGTACAAATA
* *
22508458 GGGGCACGTATGTGCAATTTAGGGGTACCAAAGTACAAATA
1 GGGGCACGTATGTGTAATTTAGGGGTACCGAAGTACAAATA
* * *
22508499 GGGGCACATATGTGTAATTCAGGGGTACCGAAGTATAAATA
1 GGGGCACGTATGTGTAATTTAGGGGTACCGAAGTACAAATA
*
22508540 GGGGCATGTATGTGTAATTTAGGG
1 GGGGCACGTATGTGTAATTTAGGG
22508564 AATAACTAAC
Statistics
Matches: 119, Mismatches: 28, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
41 119 1.00
ACGTcount: A:0.31, C:0.13, G:0.32, T:0.24
Consensus pattern (41 bp):
GGGGCACGTATGTGTAATTTAGGGGTACCGAAGTACAAATA
Found at i:22508806 original size:17 final size:17
Alignment explanation
Indices: 22508786--22508823 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
22508776 TCAATCTTAA
22508786 AATTCA-ATTTAATCCAT
1 AATTCACATTT-ATCCAT
*
22508803 AATTCACATTTATTCAT
1 AATTCACATTTATCCAT
22508820 AATT
1 AATT
22508824 ATAATTTTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.39, C:0.16, G:0.00, T:0.45
Consensus pattern (17 bp):
AATTCACATTTATCCAT
Found at i:22509806 original size:11 final size:12
Alignment explanation
Indices: 22509771--22509816 Score: 51
Period size: 11 Copynumber: 3.8 Consensus size: 12
22509761 CACAAACTAA
22509771 TCCTCTCACAAATT
1 TCCTCTCA-AAA-T
22509785 TCCTCTC-AAAT
1 TCCTCTCAAAAT
22509796 TCCT-TCAAAAT
1 TCCTCTCAAAAT
*
22509807 TTCTCTCAAA
1 TCCTCTCAAA
22509817 TCCATATTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
10 2 0.07
11 12 0.41
12 8 0.28
14 7 0.24
ACGTcount: A:0.30, C:0.33, G:0.00, T:0.37
Consensus pattern (12 bp):
TCCTCTCAAAAT
Found at i:22509812 original size:22 final size:25
Alignment explanation
Indices: 22509771--22509817 Score: 73
Period size: 22 Copynumber: 2.0 Consensus size: 25
22509761 CACAAACTAA
22509771 TCCTCTCACAAATTTCCTCTCAAAT
1 TCCTCTCACAAATTTCCTCTCAAAT
22509796 TCCT-TCA-AAATTT-CTCTCAAAT
1 TCCTCTCACAAATTTCCTCTCAAAT
22509818 CCATATTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 9 0.41
23 6 0.27
24 3 0.14
25 4 0.18
ACGTcount: A:0.30, C:0.32, G:0.00, T:0.38
Consensus pattern (25 bp):
TCCTCTCACAAATTTCCTCTCAAAT
Found at i:22511033 original size:7 final size:7
Alignment explanation
Indices: 22511020--22511052 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
22511010 TAGTCGATTG
22511020 GTATTTA
1 GTATTTA
*
22511027 ATATTTA
1 GTATTTA
22511034 GTATTTA
1 GTATTTA
22511041 GTATTTA
1 GTATTTA
22511048 GTATT
1 GTATT
22511053 ATGTATATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:22511681 original size:18 final size:18
Alignment explanation
Indices: 22511654--22511693 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
22511644 TAGCTGCGTT
* *
22511654 TCCTAGCCCTTTTATGTA
1 TCCTAACCCTTATATGTA
*
22511672 TCCTAACCCTTATATGTT
1 TCCTAACCCTTATATGTA
22511690 TCCT
1 TCCT
22511694 TTTTCGAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.30, G:0.07, T:0.45
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:22512285 original size:22 final size:21
Alignment explanation
Indices: 22512252--22513313 Score: 1081
Period size: 22 Copynumber: 49.0 Consensus size: 21
22512242 TAAAAACCCT
*
22512252 AACCCTAACCCTTAAATTAAA
1 AACCCTAACCCTTAACTTAAA
* * *
22512273 ACCCCTAACCCCTTAATTTTAA
1 AACCCTAA-CCCTTAACTTAAA
*
22512295 AACCCTAAACCCTTAACCTAAA
1 AACCCT-AACCCTTAACTTAAA
*
22512317 AACCCTAACCCTAAACACTTAACCTAAA
1 AACCCTAA--C----C-CTTAACTTAAA
*
22512345 AACCCTAATCCTTAACATT-AA
1 AACCCTAACCCTTAAC-TTAAA
* *
22512366 AACTCTAAACCCTTAACCTAAAA
1 AACCCT-AACCCTTAA-CTTAAA
* *
22512389 AACCCTAAACTCTTAAATTAAA
1 AACCCT-AACCCTTAACTTAAA
* * *
22512411 AACCATAAACCCTTAAATTTAA
1 AACCCT-AACCCTTAACTTAAA
* * *
22512433 AACCATAAATCCTTAAATTAAA
1 AACCCT-AACCCTTAACTTAAA
*
22512455 AACCCTAACCCTTAACTTGAA
1 AACCCTAACCCTTAACTTAAA
* *
22512476 AACACTAACCCTTAACTTTAA
1 AACCCTAACCCTTAACTTAAA
*
22512497 AACCCTAAACCATTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
22512519 AACCCTAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
*
22512541 AACCCTAACCCTTAAATTAAA
1 AACCCTAACCCTTAACTTAAA
* *
22512562 AACCATAAACCCTTAACCTAAA
1 AACCCT-AACCCTTAACTTAAA
* *
22512584 AACCAT-ACCCTTAACTTGAA
1 AACCCTAACCCTTAACTTAAA
*
22512604 AACCCTAAACCC-TAACTTTAA
1 AACCCT-AACCCTTAACTTAAA
22512625 AA-CCTCAGACCCTTAACTTAAA
1 AACCCT-A-ACCCTTAACTTAAA
22512647 AACCCTAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
* * *
22512669 AACACTAACCCATAAATTAAA
1 AACCCTAACCCTTAACTTAAA
* *
22512690 AACCATAAACCCTTAACCTAAA
1 AACCCT-AACCCTTAACTTAAA
* * **
22512712 AATCATAACCCTTAAAATAAA
1 AACCCTAACCCTTAACTTAAA
*
22512733 AACCCTAAACCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
*
22512754 AACCATAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
* *
22512776 AACCTTAACCCTTAAATTAAA
1 AACCCTAACCCTTAACTTAAA
* *
22512797 AACCATAAACCCTTAACCTAAA
1 AACCCT-AACCCTTAACTTAAA
*
22512819 AACCCTAACCCTTAACCTAAA
1 AACCCTAACCCTTAACTTAAA
* *
22512840 AACCCTAAACCTTAACTTTAA
1 AACCCTAACCCTTAACTTAAA
22512861 AACCCTAGACCCTTAACTTAAA
1 AACCCTA-ACCCTTAACTTAAA
*
22512883 AACCATAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
* *
22512905 AACCTTAACCCTTAAATTAAA
1 AACCCTAACCCTTAACTTAAA
* *
22512926 AACCCTAAACCCTTAGCCTAAA
1 AACCCT-AACCCTTAACTTAAA
*
22512948 AACCCTAACCCTTAACCTAAA
1 AACCCTAACCCTTAACTTAAA
* *
22512969 AACCCTAAACCTTAACTTTAA
1 AACCCTAACCCTTAACTTAAA
22512990 AACCCTAGACCCTTAACTTAAA
1 AACCCTA-ACCCTTAACTTAAA
*
22513012 AACCATAAACCCTTAACTT-AA
1 AACCCT-AACCCTTAACTTAAA
* *
22513033 AACACTAACCCTTAAATTAAA
1 AACCCTAACCCTTAACTTAAA
* *
22513054 ACCCCTAAACCCTTAACCTAAAA
1 AACCCT-AACCCTTAA-CTTAAA
* *
22513077 AACCCTAACCTTTAACCTAAA
1 AACCCTAACCCTTAACTTAAA
* *
22513098 AACCCTAAACCTTAACTTTAA
1 AACCCTAACCCTTAACTTAAA
*
22513119 AACCCTAAAACCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
22513141 AACCCTAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
* *
22513163 AACCCTAACCCCTAAATTAAA
1 AACCCTAACCCTTAACTTAAA
* *
22513184 AACCCTAATCCTTTAACCTAAA
1 AACCCTAA-CCCTTAACTTAAA
** *
22513206 AATACTAACCCTTAACCTAAA
1 AACCCTAACCCTTAACTTAAA
* *
22513227 AACCCTAAACCTTTAACTTTAA
1 AACCCT-AACCCTTAACTTAAA
* *
22513249 AACCCTAAACCTTTAACTTTAA
1 AACCCT-AACCCTTAACTTAAA
22513271 AACCCTAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
22513293 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
22513314 TATAATTTGA
Statistics
Matches: 889, Mismatches: 118, Indels: 68
0.83 0.11 0.06
Matches are distributed among these distances:
20 32 0.04
21 350 0.39
22 452 0.51
23 35 0.04
27 1 0.00
28 19 0.02
ACGTcount: A:0.46, C:0.30, G:0.01, T:0.24
Consensus pattern (21 bp):
AACCCTAACCCTTAACTTAAA
Found at i:22512316 original size:13 final size:13
Alignment explanation
Indices: 22512298--22512344 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
22512288 ATTTTAAAAC
22512298 CCTAAACCCTTAA
1 CCTAAACCCTTAA
22512311 CCTAAAAACCC-TAA
1 CCT--AAACCCTTAA
*
22512325 CCCTAAACACTTAA
1 -CCTAAACCCTTAA
22512339 CCTAAA
1 CCTAAA
22512345 AACCCTAATC
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
13 14 0.48
14 6 0.21
15 9 0.31
ACGTcount: A:0.45, C:0.36, G:0.00, T:0.19
Consensus pattern (13 bp):
CCTAAACCCTTAA
Found at i:22512325 original size:14 final size:14
Alignment explanation
Indices: 22512301--22512352 Score: 61
Period size: 15 Copynumber: 3.6 Consensus size: 14
22512291 TTAAAACCCT
22512301 AAACCCTTAACCTAA
1 AAACCC-TAACCTAA
22512316 AAACCCTAACCCTAA
1 AAACCCTAA-CCTAA
* *
22512331 ACA-CTTAACCTAA
1 AAACCCTAACCTAA
22512344 AAACCCTAA
1 AAACCCTAA
22512353 TCCTTAACAT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
13 7 0.23
14 11 0.35
15 13 0.42
ACGTcount: A:0.48, C:0.35, G:0.00, T:0.17
Consensus pattern (14 bp):
AAACCCTAACCTAA
Found at i:22512337 original size:28 final size:28
Alignment explanation
Indices: 22512295--22512365 Score: 108
Period size: 28 Copynumber: 2.6 Consensus size: 28
22512285 TTAATTTTAA
*
22512295 AACCCTAAACCCTTAACCTAAAAACCCT
1 AACCCTAAACACTTAACCTAAAAACCCT
22512323 AACCCTAAACACTTAACCTAAAAACCCT
1 AACCCTAAACACTTAACCTAAAAACCCT
* *
22512351 AATCCTTAACA-TTAA
1 AACCCTAAACACTTAA
22512366 AACTCTAAAC
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 4 0.10
28 36 0.90
ACGTcount: A:0.45, C:0.34, G:0.00, T:0.21
Consensus pattern (28 bp):
AACCCTAAACACTTAACCTAAAAACCCT
Found at i:22512374 original size:43 final size:42
Alignment explanation
Indices: 22512323--22513313 Score: 996
Period size: 43 Copynumber: 23.0 Consensus size: 42
22512313 TAAAAACCCT
* * *
22512323 AACCCTAAACACTTAACCTAAAAACCCTAATCCTTAACATTAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAAC-TTAA
* * * *
22512366 AACTCTAAACCCTTAACCTAAAAAACCCTAAACTCTTAAATTAAA
1 AACCCTAAACCCTTAA-CTTAAAAACCCT-AACCCTTAACTT-AA
* * * * * *
22512411 AACCATAAACCCTTAAATTTAAAACCATAAATCCTTAAATTAAA
1 AACCCTAAACCCTTAACTTAAAAACCCT-AACCCTTAACTT-AA
* *
22512455 AACCCT-AACCCTTAACTTGAAAACACTAACCCTTAACTTTAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAAC-TTAA
*
22512497 AACCCTAAACCATTAACTTAAAAACCCTAAACCCTTAACTTAAA
1 AACCCTAAACCCTTAACTTAAAAACCCT-AACCCTTAACTT-AA
* * *
22512541 AACCCT-AACCCTTAAATTAAAAACCATAAACCCTTAACCTAA
1 AACCCTAAACCCTTAACTTAAAAACCCT-AACCCTTAACTTAA
* * *
22512583 AAACC-ATACCCTTAACTTGAAAACCCTAAACCC-TAACTTTAA
1 AACCCTAAACCCTTAACTTAAAAACCCT-AACCCTTAAC-TTAA
*
22512625 AA-CCTCAGACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
1 AACCCT-AAACCCTTAACTTAAAAACCCT-AACCCTTAACTT-AA
* * * * *
22512669 AACACT-AACCCATAAATTAAAAACCATAAACCCTTAACCTAA
1 AACCCTAAACCCTTAACTTAAAAACCCT-AACCCTTAACTTAA
** ** *
22512711 AAATC-ATAACCCTTAAAATAAAAACCCTAAACCTTAACTTAAA
1 AACCCTA-AACCCTTAACTTAAAAACCCTAACCCTTAACTT-AA
* * *
22512754 AACCATAAACCCTTAACTTAAAAACCTTAACCCTTAAATTAAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTT-AA
* * *
22512797 AACCATAAACCCTTAACCTAAAAACCCTAACCCTTAACCTAAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAA-CTTAA
*
22512840 AACCCTAAA-CCTTAACTTTAAAACCCTAGACCCTTAACTTAAA
1 AACCCTAAACCCTTAACTTAAAAACCCTA-ACCCTTAACTT-AA
* * *
22512883 AACCATAAACCCTTAACTTAAAAACCTTAACCCTTAAATTAAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTT-AA
* * *
22512926 AACCCTAAACCCTTAGCCTAAAAACCCTAACCCTTAACCTAAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAA-CTTAA
*
22512969 AACCCTAAA-CCTTAACTTTAAAACCCTAGACCCTTAACTTAAA
1 AACCCTAAACCCTTAACTTAAAAACCCTA-ACCCTTAACTT-AA
* * *
22513012 AACCATAAACCCTTAACTT-AAAACACTAACCCTTAAATTAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAA
* * *
22513053 AACCCCTAAACCCTTAACCTAAAAAACCCTAACCTTTAACCTAAA
1 AA-CCCTAAACCCTTAA-CTTAAAAACCCTAACCCTTAA-CTTAA
* *
22513098 AACCCTAAA-CCTTAACTTTAAAACCCTAAAACCTTAACTTAAA
1 AACCCTAAACCCTTAACTTAAAAACCCT-AACCCTTAACTT-AA
* *
22513141 AACCCTAAACCCTTAACTTAAAAACCCTAACCCCTAAATTAAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTT-AA
* * * ** *
22513184 AACCCTAATCCTTTAACCTAAAAATACTAACCCTTAACCTAAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAA-CTTAA
* * *
22513227 AACCCTAAACCTTTAACTTTAAAACCCTAAACCTTTAACTTTAA
1 AACCCTAAACCCTTAACTTAAAAACCCT-AACCCTTAAC-TTAA
22513271 AACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAA
22513313 A
1 A
22513314 TATAATTTGA
Statistics
Matches: 796, Mismatches: 116, Indels: 73
0.81 0.12 0.07
Matches are distributed among these distances:
41 10 0.01
42 142 0.18
43 443 0.56
44 171 0.21
45 30 0.04
ACGTcount: A:0.46, C:0.30, G:0.01, T:0.24
Consensus pattern (42 bp):
AACCCTAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAA
Found at i:22512615 original size:129 final size:129
Alignment explanation
Indices: 22512252--22513313 Score: 1237
Period size: 129 Copynumber: 8.2 Consensus size: 129
22512242 TAAAAACCCT
* * * * *
22512252 AACCCTAACCCTTAAATTAAAACCCCTAACCCCTTAATTTTAAAACCCTAAACCCTTAACCTAAA
1 AACCCTAACCCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAACCAT-AACCCTTAACCTAAA
* * * *
22512317 AACCCTAACCCTAAACACTTAACCTAAAAACCCT-AATCCTTAACATT-AAAACTCTAAACCCTT
65 AACCATAACCCT-TA-ACTT----T-AAAACCCTAAACCCTTAAC-TTAAAAACCCTAAACCCTT
*
22512380 AACCTAAAA
122 AA-CTTAAA
* * * * * **
22512389 AACCCTAAACTCTTAAATTAAAAACCATAAACCCTTAAATTTAAAACCATAAATCCTTAAATTAA
1 AACCCT-AACCCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAACCAT-AACCCTTAACCTAA
* * * * *
22512454 AAACCCTAACCCTTAACTTGAAAACACT-AACCCTTAACTTTAAAACCCTAAACCATTAACTTAA
64 AAACCATAACCCTTAACTTTAAAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
22512518 A
129 A
* *
22512519 AACCCTAAACCCTTAACTTAAAAACCCT-AACCCTTAAATTAAAAACCATAAACCCTTAACCTAA
1 AACCCT-AACCCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAACCAT-AACCCTTAACCTAA
* * *
22512583 AAACCAT-ACCCTTAACTTGAAAACCCTAAACCC-TAACTTTAAAA-CCTCAGACCCTTAACTTA
64 AAACCATAACCCTTAACTTTAAAACCCTAAACCCTTAACTTAAAAACCCT-AAACCCTTAACTTA
22512645 AA
128 AA
* * * *
22512647 AACCCTAAACCCTTAACTTAAAAACACT-AACCCATAAATTAAAAACCATAAACCCTTAACCTAA
1 AACCCT-AACCCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAACCAT-AACCCTTAACCTAA
* ** * *
22512711 AAATCATAACCCTTAAAATAAAAACCCTAAA-CCTTAACTTAAAAACCATAAACCCTTAACTTAA
64 AAACCATAACCCTTAACTTTAAAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
22512775 A
129 A
* * * *
22512776 AACCTTAACCCTTAAATTAAAAACCATAAACCCTTAACCTAAAAACCCTAACCCTTAACCTAAAA
1 AACCCTAACCCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAACCATAACCCTTAACCTAAAA
* * * *
22512841 ACCCTAAACCTTAACTTTAAAACCCTAGACCCTTAACTTAAAAACCATAAACCCTTAACTTAAA
66 ACCATAACCCTTAACTTTAAAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* * * *
22512905 AACCTTAACCCTTAAATTAAAAACCCTAAACCCTTAGCCTAAAAACCCTAACCCTTAACCTAAAA
1 AACCCTAACCCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAACCATAACCCTTAACCTAAAA
* * * *
22512970 ACCCTAAACCTTAACTTTAAAACCCTAGACCCTTAACTTAAAAACCATAAACCCTTAACTT-AA
66 ACCATAACCCTTAACTTTAAAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* * * * *
22513033 AACACTAACCCTTAAATTAAAACCCCTAAACCCTTAACCTAAAAAACCCTAACCTTTAACCTAAA
1 AACCCTAACCCTTAAATTAAAAACCCTAAACCCTTAA-CTTAAAAACCATAACCCTTAACCTAAA
* * *
22513098 AACCCTAAACCTTAACTTTAAAACCCTAAAACCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
65 AACCATAACCCTTAACTTTAAAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* * * * *
22513163 AACCCTAACCCCTAAATTAAAAACCCTAATCCTTTAACCTAAAAA-TACTAACCCTTAACCTAAA
1 AACCCTAACCCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAACCA-TAACCCTTAACCTAAA
* * * *
22513227 AACCCTAAACCTTTAACTTTAAAACCCTAAACCTTTAACTTTAAAACCCTAAACCCTTAACTTAA
65 AACCAT-AACCCTTAACTTTAAAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAA
22513292 A
129 A
*
22513293 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAAATTAAA
22513314 TATAATTTGA
Statistics
Matches: 832, Mismatches: 80, Indels: 33
0.88 0.08 0.03
Matches are distributed among these distances:
127 3 0.00
128 205 0.25
129 378 0.45
130 141 0.17
131 32 0.04
136 4 0.00
137 7 0.01
138 62 0.07
ACGTcount: A:0.46, C:0.30, G:0.01, T:0.24
Consensus pattern (129 bp):
AACCCTAACCCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAACCATAACCCTTAACCTAAAA
ACCATAACCCTTAACTTTAAAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
Found at i:22516709 original size:127 final size:126
Alignment explanation
Indices: 22516286--22516756 Score: 538
Period size: 126 Copynumber: 3.8 Consensus size: 126
22516276 GAAACATGTT
* * * * * **
22516286 ACTGTAGCAAAAGCGCGTCCATGTGAGTGTGATTTCACAAATTCTTCTCATAAAGCATCCTGCAA
1 ACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTT
** * * * * *
22516351 GAAGCG--ACTTTATACTATTTGCTTAGAAACGTCAAGTTGAAATTATTTTTCTAGGACCA
66 GAAGCGTTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGACCA
* * **
22516410 ACTATAGCAAAAGCGCGTCCACGAGGGTGCGATTTCACAAATTCTTCTCA-AATAGCATGTTGCT
1 ACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAA-AGCATCCTGCT
* * * * *
22516474 TGTAGCGTTGTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTA-TTTTCTCAGGACCT
65 TGAAGCGTTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTC-CAGGACCA
** * * * ** *
22516536 ACTGTAGCAAAAGTTCGTCCACGTGGGCGCGACTTCACAAATTCTTCTTATAAAGCATATTTCTT
1 ACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTT
* * *
22516601 GAAGCGTTTTTTTAAACTATTTCCTCAAAAACGTCAACTCGAAATTATTTCTTCCAGGATCA
66 GAAGCGTTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTT-TTCCAGGACCA
* *
22516663 ACTGTAGTAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCACAAAGCATCCTGCTT
1 ACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTT
* *
22516728 GAAGC-ATTTTTTAAACTAGTTGCTCAGAA
66 GAAGCGTTTTTTTAAACTATTTGCTCAGAA
22516757 GCGACTTCAA
Statistics
Matches: 291, Mismatches: 49, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
123 2 0.01
124 58 0.20
125 5 0.02
126 153 0.53
127 70 0.24
128 3 0.01
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (126 bp):
ACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTT
GAAGCGTTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGACCA
Found at i:22525664 original size:37 final size:37
Alignment explanation
Indices: 22525614--22525692 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
22525604 TTATTACGAA
* * * *
22525614 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
*
22525651 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCAG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
22525688 GTCTT
1 GTCTT
22525693 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
Found at i:22525880 original size:47 final size:47
Alignment explanation
Indices: 22525811--22526205 Score: 745
Period size: 47 Copynumber: 8.4 Consensus size: 47
22525801 CCCTTCGGGA
*
22525811 CTTATCACATTTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22525858 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22525905 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22525952 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
22525999 CTTATCACATATATACACTTTCAGATTCATGACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22526046 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22526093 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22526140 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22526187 CTTATCACATATATACACT
1 CTTATCACATATATACACT
22526206 GTCTTGGCTG
Statistics
Matches: 339, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 339 1.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:22534923 original size:37 final size:37
Alignment explanation
Indices: 22534850--22534928 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
22534840 TTATTACGAA
* * * *
22534850 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAATCATCGG
22534887 GTCTTACCCGGACAAAATCCCCACAC-ATAATCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGA-AATCATCGG
22534924 GTCTT
1 GTCTT
22534929 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 1 0.03
37 36 0.97
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAATCATCGG
Found at i:22535125 original size:47 final size:47
Alignment explanation
Indices: 22535047--22535541 Score: 481
Period size: 49 Copynumber: 10.6 Consensus size: 47
22535037 CCCTTCGGGA
* * * * * *
22535047 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
22535094 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22535141 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22535188 CTTATCACATATGTATACACTTTCACATTCCTCACATCGGCCATTAGGC
1 CTTATCACATA--TATACACTTTCACATTCATCACATCGGCCATTAGGC
** * *
22535237 CTTATCACATATATACA----CACA-TCGGC-CATTAGGCC-TTA-TC
1 CTTATCACATATATACACTTTCACATTCATCACA-TCGGCCATTAGGC
* * *
22535277 ACATATAT-ACACT-T-T-CACATTCATCA--CATCGGCCATTAGGCC-TTA---
1 -C-T-TATCACA-TATATACACTTTCA-CATTCATC--ACA-TCGGCCATTAGGC
* ** *
22535322 -TCA-CATGTATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22535367 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
22535416 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22535465 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
22535514 CTTATCACATGTATATACACTTTCACAT
1 CTTATCACA--TATATACACTTTCACAT
22535542 ATGGGTTTAA
Statistics
Matches: 385, Mismatches: 30, Indels: 64
0.80 0.06 0.13
Matches are distributed among these distances:
40 4 0.01
41 14 0.04
42 22 0.06
43 15 0.04
44 8 0.02
45 2 0.01
46 2 0.01
47 115 0.30
49 202 0.52
51 1 0.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:22535259 original size:34 final size:34
Alignment explanation
Indices: 22535220--22535288 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
22535210 TCACATTCCT
22535220 CACATCGGCCATTAGGCCTTATCACATATATACA
1 CACATCGGCCATTAGGCCTTATCACATATATACA
22535254 CACATCGGCCATTAGGCCTTATCACATATATACA
1 CACATCGGCCATTAGGCCTTATCACATATATACA
22535288 C
1 C
22535289 TTTCACATTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.32, C:0.30, G:0.12, T:0.26
Consensus pattern (34 bp):
CACATCGGCCATTAGGCCTTATCACATATATACA
Found at i:22535310 original size:81 final size:82
Alignment explanation
Indices: 22535171--22535337 Score: 282
Period size: 81 Copynumber: 2.0 Consensus size: 82
22535161 TCACATTCAT
* *
22535171 CACATCGGCTATTAGGCCTTATCACATATGTATACACTTTCACATTCCTCACATCGGCCATTAGG
1 CACATCGGCCATTAGGCCTTATCACATA-GTATACACTTTCACATTCATCACATCGGCCATTAGG
22535236 CCTTATCACATATATACA
65 CCTTATCACATATATACA
22535254 CACATCGGCCATTAGGCCTTATCACATA-TATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CACATCGGCCATTAGGCCTTATCACATAGTATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
22535318 CTTATCACATGTATATA
66 CTTATCACATATATACA
22535335 CAC
1 CAC
22535338 TTTCACATTC
Statistics
Matches: 80, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
81 53 0.66
83 27 0.34
ACGTcount: A:0.29, C:0.29, G:0.11, T:0.31
Consensus pattern (82 bp):
CACATCGGCCATTAGGCCTTATCACATAGTATACACTTTCACATTCATCACATCGGCCATTAGGC
CTTATCACATATATACA
Found at i:22535357 original size:130 final size:130
Alignment explanation
Indices: 22535124--22535533 Score: 595
Period size: 130 Copynumber: 3.0 Consensus size: 130
22535114 TCACATTCAT
*
22535124 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCC
1 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* * *
22535189 TTATCACATATGTATACACTTTCACATTCCTCACATCGGCCATTAGGCCTTATCACATATATACA
66 TTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
22535254 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
22535319 TTATCACATGTATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATGTATATA
66 TTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC----ATAT-
22535384 CACTTTCACATTCA
126 -A---T---A--CA
*
22535398 TCACATCGGCTATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAG
1 -CACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAG
*
22535463 GCCTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATGTAT
63 GCCTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
*
22535528 ATA
128 ACA
22535531 CAC
1 CAC
22535534 TTTCACATAT
Statistics
Matches: 254, Mismatches: 9, Indels: 32
0.86 0.03 0.11
Matches are distributed among these distances:
130 116 0.46
132 3 0.01
133 1 0.00
134 4 0.02
135 1 0.00
136 1 0.00
138 1 0.00
139 1 0.00
141 1 0.00
142 1 0.00
143 3 0.01
144 2 0.01
145 24 0.09
147 95 0.37
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.32
Consensus pattern (130 bp):
CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
TTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
Found at i:22535421 original size:98 final size:98
Alignment explanation
Indices: 22535254--22535541 Score: 535
Period size: 98 Copynumber: 3.0 Consensus size: 98
22535244 CATATATACA
22535254 CACATCGGCCATTAGGCCTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGG
1 CACATCGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGG
22535317 CCTTATCACATGTATATACACTTTCACATTCAT
66 CCTTATCACATGTATATACACTTTCACATTCAT
* *
22535350 CACATCGGCTATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACATCGGCTATTAGG
1 CACATCGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGG
*
22535415 CCTTATCACATATATATACACTTTCACATTCAT
66 CCTTATCACATGTATATACACTTTCACATTCAT
22535448 CACATCGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGG
1 CACATCGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGG
22535513 CCTTATCACATGTATATACACTTTCACAT
66 CCTTATCACATGTATATACACTTTCACAT
22535542 ATGGGTTTAA
Statistics
Matches: 184, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
96 25 0.14
98 159 0.86
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.33
Consensus pattern (98 bp):
CACATCGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGG
CCTTATCACATGTATATACACTTTCACATTCAT
Found at i:22535456 original size:147 final size:145
Alignment explanation
Indices: 22535254--22535541 Score: 540
Period size: 147 Copynumber: 2.0 Consensus size: 145
22535244 CATATATACA
22535254 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
22535319 TTATCACATGTATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATGTATATA
66 TTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATGTATATA
22535384 CACTTTCACATTCAT
131 CACTTTCACATTCAT
*
22535399 CACATCGGCTATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG
1 CACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGG
22535464 CCTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATGTATA
64 CCTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATGTATA
22535529 TACACTTTCACAT
129 TACACTTTCACAT
22535542 ATGGGTTTAA
Statistics
Matches: 139, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
145 24 0.17
147 115 0.83
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.33
Consensus pattern (145 bp):
CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
TTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATGTATATA
CACTTTCACATTCAT
Found at i:22541124 original size:61 final size:58
Alignment explanation
Indices: 22541013--22541144 Score: 183
Period size: 61 Copynumber: 2.2 Consensus size: 58
22541003 ATTACTTTAA
* * * *
22541013 TATTAAATTAATATAATACTTATTAAGATAAATATTAGATTAAATTTAATATTAAATC
1 TATTAAATTAATAGAATACTTATTAAGATAAATATTAAATTAAATGTAATATTAAAAC
*
22541071 TATTAAATTGATAGAATACTTATCTATAAGATAAATATTAAATTAAATGTAATATTAAAAC
1 TATTAAATTAATAGAATACTTA--T-TAAGATAAATATTAAATTAAATGTAATATTAAAAC
*
22541132 TATTAAAATAATA
1 TATTAAATTAATA
22541145 TTATTTTTGG
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
58 20 0.31
60 1 0.02
61 43 0.67
ACGTcount: A:0.52, C:0.04, G:0.05, T:0.40
Consensus pattern (58 bp):
TATTAAATTAATAGAATACTTATTAAGATAAATATTAAATTAAATGTAATATTAAAAC
Found at i:22553555 original size:30 final size:30
Alignment explanation
Indices: 22553498--22553556 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
22553488 GCCTTTTGAA
* *
22553498 AATATTTACAAAAAGAGACATCTAATTTTT
1 AATATTTACAAAAAGAGACACCAAATTTTT
22553528 AATATTTACAAAAAGAGTA-ACCAAATTTT
1 AATATTTACAAAAAGAG-ACACCAAATTTT
22553557 GAAAATAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.49, C:0.10, G:0.07, T:0.34
Consensus pattern (30 bp):
AATATTTACAAAAAGAGACACCAAATTTTT
Found at i:22557355 original size:11 final size:11
Alignment explanation
Indices: 22557339--22557378 Score: 80
Period size: 11 Copynumber: 3.6 Consensus size: 11
22557329 TTACAATAAT
22557339 ATGTTGCTCTA
1 ATGTTGCTCTA
22557350 ATGTTGCTCTA
1 ATGTTGCTCTA
22557361 ATGTTGCTCTA
1 ATGTTGCTCTA
22557372 ATGTTGC
1 ATGTTGC
22557379 AAGGTATGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.17, C:0.17, G:0.20, T:0.45
Consensus pattern (11 bp):
ATGTTGCTCTA
Found at i:22560667 original size:26 final size:25
Alignment explanation
Indices: 22560612--22560667 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 25
22560602 TAATAAAAAG
22560612 TTATTATAAATTAATTAAATTCAAC
1 TTATTATAAATTAATTAAATTCAAC
* * *
22560637 ATATTAATAATTTAATTACAATTTAA-
1 TTATT-ATAAATTAATTA-AATTCAAC
22560663 TTATT
1 TTATT
22560668 TTATAATAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
25 4 0.16
26 15 0.60
27 6 0.24
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.48
Consensus pattern (25 bp):
TTATTATAAATTAATTAAATTCAAC
Found at i:22565995 original size:125 final size:125
Alignment explanation
Indices: 22565842--22566099 Score: 453
Period size: 125 Copynumber: 2.1 Consensus size: 125
22565832 TAATAAATTT
*
22565842 TTAATAAAACCAACCCACCATCACCCATCAACATTTAATTAGTGGTGTAATTACTACTTTAGTCC
1 TTAAT-AAACCAACCCACCATCACCCATCAACATTTAATTAGTGGTGTAATTACTACTTTACTCC
* *
22565907 TTTTAATTAATTTCAATCTATAATTTAACTTTTAGCACTTATGCGATTTAGTCCATGTACA
65 TTTTAATTAATTTCAATCTATAATTCAACTTTTAGCACTTACGCGATTTAGTCCATGTACA
*
22565968 TTAATAAACCAACCCACCATCGCCCATCAACATTTAATTAGTGGTGTAATTACTACTTTACTCCT
1 TTAATAAACCAACCCACCATCACCCATCAACATTTAATTAGTGGTGTAATTACTACTTTACTCCT
* *
22566033 TTTAATTAATTTCAATCTATAATTCAACTTTTAGCTCTTACGTGATTTAGTCCATGTACA
66 TTTAATTAATTTCAATCTATAATTCAACTTTTAGCACTTACGCGATTTAGTCCATGTACA
22566093 TTAATAA
1 TTAATAA
22566100 CTCCTAATTC
Statistics
Matches: 126, Mismatches: 6, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
125 121 0.96
126 5 0.04
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (125 bp):
TTAATAAACCAACCCACCATCACCCATCAACATTTAATTAGTGGTGTAATTACTACTTTACTCCT
TTTAATTAATTTCAATCTATAATTCAACTTTTAGCACTTACGCGATTTAGTCCATGTACA
Found at i:22568447 original size:64 final size:64
Alignment explanation
Indices: 22568370--22568560 Score: 285
Period size: 64 Copynumber: 3.0 Consensus size: 64
22568360 AAAATTGGAG
* *
22568370 ACTCAATCCCAGTCACTTAATCTGAATTACTTACAACAGTCAATTCCCAAAACTATTGACAAAA
1 ACTCAATCTCAGTCACTTAATCTGAATTACTTACAACAGTCAATTCCCAAAACTATCGACAAAA
* ** * *
22568434 ACTCAATCTCAGTCACTTAATCTGAATTACTTACAATAGTCAATTCCTGAAACTATCAACGAAA
1 ACTCAATCTCAGTCACTTAATCTGAATTACTTACAACAGTCAATTCCCAAAACTATCGACAAAA
* *
22568498 ACTCAATCTCAATCACTTAATCTAAATTACTTACAATC-GTCAATTCCCAAAACTATCGACAAA
1 ACTCAATCTCAGTCACTTAATCTGAATTACTTACAA-CAGTCAATTCCCAAAACTATCGACAAA
22568561 CTTACCTCGC
Statistics
Matches: 112, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
64 112 1.00
ACGTcount: A:0.40, C:0.26, G:0.06, T:0.28
Consensus pattern (64 bp):
ACTCAATCTCAGTCACTTAATCTGAATTACTTACAACAGTCAATTCCCAAAACTATCGACAAAA
Found at i:22585433 original size:136 final size:136
Alignment explanation
Indices: 22585207--22585758 Score: 935
Period size: 136 Copynumber: 4.1 Consensus size: 136
22585197 TATCACTTTA
* *
22585207 ACATTTTAGTCTTTTAACATTAAAATTACTAAAAATTAC-TTACAAAATAGTCTTATTTAACAAT
1 ACATTTTAATCCTTTAACATTAAAATTACTAAAAATTACTTTACAAAATAGTCTTATTTAACAAT
* *
22585271 AAAACTTAATAATTTATCATAAAACTTCAAAAACATACTAAAATCATCAATTACATAATCCATAA
66 AAAGCTTAATAATTTATCATAAAACTTCAAAAACATACTAAACTCATCAATTACATAATCCATAA
22585336 CATTTG
131 CATTTG
* *
22585342 ACATTTTAATCCTTTAACATTAAAATTGCTAAAAATTACTTTACTAAATAGTCTTATTTAACAAT
1 ACATTTTAATCCTTTAACATTAAAATTACTAAAAATTACTTTACAAAATAGTCTTATTTAACAAT
* *
22585407 AAAGCTTAATAATTTATAATAAAACTTCAAAAACATACTAAACTCATCAATTACATAATCCAGAA
66 AAAGCTTAATAATTTATCATAAAACTTCAAAAACATACTAAACTCATCAATTACATAATCCATAA
22585472 CATTTG
131 CATTTG
* * * *
22585478 ACATTTTAGTCCTTTAACATTAAAATTGCTAAAAATTACTTTGCAAAATAGTCTTATTCAACAAT
1 ACATTTTAATCCTTTAACATTAAAATTACTAAAAATTACTTTACAAAATAGTCTTATTTAACAAT
* *
22585543 AAAGCTTACTAATTTATCATAAAACTTCAAAAACACACTAAACTCATCAATTACATAATCCATAA
66 AAAGCTTAATAATTTATCATAAAACTTCAAAAACATACTAAACTCATCAATTACATAATCCATAA
22585608 CATTTG
131 CATTTG
*
22585614 ACATTTTAATCCTTTAACATTAAAATTACTAAAAATTACTTTACAAAATAGTCTTATTTAATAAT
1 ACATTTTAATCCTTTAACATTAAAATTACTAAAAATTACTTTACAAAATAGTCTTATTTAACAAT
* *
22585679 AAAGCTTAATAATTTATCATAAAACTTAAAAAAAATACTAAACTCATCAATTACATAATCCATAA
66 AAAGCTTAATAATTTATCATAAAACTTCAAAAACATACTAAACTCATCAATTACATAATCCATAA
22585744 CATTTG
131 CATTTG
22585750 ACAGTTTTA
1 ACA-TTTTA
22585759 CAAATTAGTT
Statistics
Matches: 390, Mismatches: 25, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
135 36 0.09
136 349 0.89
137 5 0.01
ACGTcount: A:0.46, C:0.16, G:0.03, T:0.35
Consensus pattern (136 bp):
ACATTTTAATCCTTTAACATTAAAATTACTAAAAATTACTTTACAAAATAGTCTTATTTAACAAT
AAAGCTTAATAATTTATCATAAAACTTCAAAAACATACTAAACTCATCAATTACATAATCCATAA
CATTTG
Found at i:22588710 original size:20 final size:20
Alignment explanation
Indices: 22588685--22588753 Score: 59
Period size: 20 Copynumber: 3.5 Consensus size: 20
22588675 ATGCACATTC
22588685 GTACCCCTGTTTGTACTTCG
1 GTACCCCTGTTTGTACTTCG
** * *
22588705 GTACCCCTGAATGCACATT-T
1 GTACCCCTGTTTGTAC-TTCG
* *
22588725 GTGCCCCTATTTGTACTTCG
1 GTACCCCTGTTTGTACTTCG
*
22588745 GTGCCCCTG
1 GTACCCCTG
22588754 AATGCACATG
Statistics
Matches: 36, Mismatches: 11, Indels: 4
0.71 0.22 0.08
Matches are distributed among these distances:
19 2 0.06
20 32 0.89
21 2 0.06
ACGTcount: A:0.13, C:0.32, G:0.20, T:0.35
Consensus pattern (20 bp):
GTACCCCTGTTTGTACTTCG
Found at i:22588802 original size:40 final size:40
Alignment explanation
Indices: 22588672--22588791 Score: 186
Period size: 40 Copynumber: 3.0 Consensus size: 40
22588662 ACTTGTTGTT
* *
22588672 TGAATGCACATTCGTACCCCTGTTTGTACTTCGGTACCCC
1 TGAATGCACATTCGTGCCCCTATTTGTACTTCGGTACCCC
* *
22588712 TGAATGCACATTTGTGCCCCTATTTGTACTTCGGTGCCCC
1 TGAATGCACATTCGTGCCCCTATTTGTACTTCGGTACCCC
* *
22588752 TGAATGCACATGCGTGCCCCTATTTGTACTTCAGTACCCC
1 TGAATGCACATTCGTGCCCCTATTTGTACTTCGGTACCCC
22588792 CGAACACACA
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 72 1.00
ACGTcount: A:0.17, C:0.32, G:0.18, T:0.33
Consensus pattern (40 bp):
TGAATGCACATTCGTGCCCCTATTTGTACTTCGGTACCCC
Found at i:22589493 original size:11 final size:11
Alignment explanation
Indices: 22589477--22589503 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
22589467 AGGTAAAATT
22589477 TTATGAATTGG
1 TTATGAATTGG
22589488 TTATGAATTGG
1 TTATGAATTGG
22589499 TTATG
1 TTATG
22589504 GGACACAGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.48
Consensus pattern (11 bp):
TTATGAATTGG
Found at i:22596060 original size:27 final size:28
Alignment explanation
Indices: 22596030--22596083 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
22596020 TTGCTTAAAC
22596030 AGTTCATCTT-TATCGAAGGGAAGAAAT
1 AGTTCATCTTGTATCGAAGGGAAGAAAT
* *
22596057 AGTTCATCTTGTATGGAAGGGTAGAAA
1 AGTTCATCTTGTATCGAAGGGAAGAAA
22596084 AATTTTTGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 10 0.42
28 14 0.58
ACGTcount: A:0.35, C:0.09, G:0.26, T:0.30
Consensus pattern (28 bp):
AGTTCATCTTGTATCGAAGGGAAGAAAT
Found at i:22598929 original size:17 final size:17
Alignment explanation
Indices: 22598907--22598939 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
22598897 ATCTCGTTCG
22598907 TATTTTTAGAAAAAACT
1 TATTTTTAGAAAAAACT
*
22598924 TATTTTTAGTAAAAAC
1 TATTTTTAGAAAAAAC
22598940 CATATTTTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.42
Consensus pattern (17 bp):
TATTTTTAGAAAAAACT
Found at i:22598945 original size:18 final size:17
Alignment explanation
Indices: 22598907--22598947 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
22598897 ATCTCGTTCG
*
22598907 TATTTTTAGAAAAAACT
1 TATTTTTAGAAAAAACA
*
22598924 TATTTTTAGTAAAAACCA
1 TATTTTTAG-AAAAAACA
22598942 TATTTT
1 TATTTT
22598948 CAGCCAACCG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.41, C:0.07, G:0.05, T:0.46
Consensus pattern (17 bp):
TATTTTTAGAAAAAACA
Found at i:22605867 original size:40 final size:41
Alignment explanation
Indices: 22605780--22605889 Score: 123
Period size: 40 Copynumber: 2.6 Consensus size: 41
22605770 TTTATTCCAG
*
22605780 CAATTAAGTAACTAAAATGAGTTTAATAAAAGAAAGTCCAACAACT
1 CAATT-AGTAACTAAGATGAGTTTAAT---A-AAAGTCCAACAACT
*
22605826 CAATTAGTAACTAAGATGAGTTTAAT-AAAGTCCAGCAACT
1 CAATTAGTAACTAAGATGAGTTTAATAAAAGTCCAACAACT
* * *
22605866 CATTTATTACCTAAGATGAGTTTA
1 CAATTAGTAACTAAGATGAGTTTA
22605890 TTTAAATTAA
Statistics
Matches: 59, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
40 34 0.58
45 20 0.34
46 5 0.08
ACGTcount: A:0.45, C:0.14, G:0.13, T:0.29
Consensus pattern (41 bp):
CAATTAGTAACTAAGATGAGTTTAATAAAAGTCCAACAACT
Found at i:22611765 original size:40 final size:40
Alignment explanation
Indices: 22611721--22611798 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
22611711 TAAATAAAAG
22611721 AAAGTCCAACAACTCAATTACTAACTAAAATGAGTTTAAT
1 AAAGTCCAACAACTCAATTACTAACTAAAATGAGTTTAAT
* * * * *
22611761 AAAGTCCAGCAACTTATTTATTAACTAAGATGAGTTTA
1 AAAGTCCAACAACTCAATTACTAACTAAAATGAGTTTA
22611799 TTTAAATTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.31
Consensus pattern (40 bp):
AAAGTCCAACAACTCAATTACTAACTAAAATGAGTTTAAT
Found at i:22622998 original size:61 final size:61
Alignment explanation
Indices: 22622903--22623024 Score: 244
Period size: 61 Copynumber: 2.0 Consensus size: 61
22622893 TGGATAAGTA
22622903 AGTATTGTGGACTGCTATAGTTATGAAAATGGTTTAGCTAGGCCTAAAATGCAAGGAAATT
1 AGTATTGTGGACTGCTATAGTTATGAAAATGGTTTAGCTAGGCCTAAAATGCAAGGAAATT
22622964 AGTATTGTGGACTGCTATAGTTATGAAAATGGTTTAGCTAGGCCTAAAATGCAAGGAAATT
1 AGTATTGTGGACTGCTATAGTTATGAAAATGGTTTAGCTAGGCCTAAAATGCAAGGAAATT
22623025 GAATAAAAAG
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.34, C:0.10, G:0.25, T:0.31
Consensus pattern (61 bp):
AGTATTGTGGACTGCTATAGTTATGAAAATGGTTTAGCTAGGCCTAAAATGCAAGGAAATT
Found at i:22623481 original size:45 final size:45
Alignment explanation
Indices: 22623430--22623517 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 45
22623420 TGTGAACCGA
* * *
22623430 ACATCATTGATTAGTAAGGTGGTTGTTATGTGCTGATTCCACCAG
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCAG
*
22623475 ACATCATTGATTAATAAGGTGGTTGCTATGTGTTGAATCCACC
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACC
22623518 GAGTATATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (45 bp):
ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCAG
Found at i:22623603 original size:30 final size:30
Alignment explanation
Indices: 22623567--22623663 Score: 108
Period size: 30 Copynumber: 3.2 Consensus size: 30
22623557 GACTAAGTGT
22623567 AATTGAATAATGAATATAGGTGTGGAATTG
1 AATTGAATAATGAATATAGGTGTGGAATTG
* * *** *
22623597 AATTGAA-CATCGACT-TAGAAATGGAAGTG
1 AATTGAATAAT-GAATATAGGTGTGGAATTG
22623626 TAATTGAATAATGAATATAGGTGTGGAATTG
1 -AATTGAATAATGAATATAGGTGTGGAATTG
22623657 AATTGAA
1 AATTGAA
22623664 CATCGACTTA
Statistics
Matches: 51, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
29 12 0.24
30 27 0.53
31 12 0.24
ACGTcount: A:0.41, C:0.03, G:0.25, T:0.31
Consensus pattern (30 bp):
AATTGAATAATGAATATAGGTGTGGAATTG
Found at i:22623628 original size:60 final size:60
Alignment explanation
Indices: 22623561--22623682 Score: 244
Period size: 60 Copynumber: 2.0 Consensus size: 60
22623551 GAAATTGACT
22623561 AAGTGTAATTGAATAATGAATATAGGTGTGGAATTGAATTGAACATCGACTTAGAAATGG
1 AAGTGTAATTGAATAATGAATATAGGTGTGGAATTGAATTGAACATCGACTTAGAAATGG
22623621 AAGTGTAATTGAATAATGAATATAGGTGTGGAATTGAATTGAACATCGACTTAGAAATGG
1 AAGTGTAATTGAATAATGAATATAGGTGTGGAATTGAATTGAACATCGACTTAGAAATGG
22623681 AA
1 AA
22623683 AAGTGAATTT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 62 1.00
ACGTcount: A:0.41, C:0.05, G:0.25, T:0.30
Consensus pattern (60 bp):
AAGTGTAATTGAATAATGAATATAGGTGTGGAATTGAATTGAACATCGACTTAGAAATGG
Found at i:22625246 original size:85 final size:85
Alignment explanation
Indices: 22625103--22625281 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
22625093 GGCCGGCCAT
22625103 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
22625168 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
22625188 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
22625253 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
22625273 GGGCATGGG
1 GAGCATGGG
22625282 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:22626558 original size:47 final size:47
Alignment explanation
Indices: 22626504--22627145 Score: 1049
Period size: 47 Copynumber: 13.6 Consensus size: 47
22626494 TATTTGAATA
22626504 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22626551 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
22626600 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22626647 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22626694 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22626741 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22626790 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC-A-ATG-TG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22626834 -ATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
22626882 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
22626931 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22626978 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22627025 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
22627072 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22627119 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
22627146 TCCCGAAGGG
Statistics
Matches: 564, Mismatches: 21, Indels: 20
0.93 0.03 0.03
Matches are distributed among these distances:
43 11 0.02
44 2 0.00
45 28 0.05
46 2 0.00
47 369 0.65
48 2 0.00
49 150 0.27
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:22633757 original size:24 final size:25
Alignment explanation
Indices: 22633721--22633772 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 25
22633711 ATTGTTTAAA
*
22633721 TTTATCATATATTATCATTTTAAGT
1 TTTATCATATATTATCATTCTAAGT
* *
22633746 TTTAT-ATGTATTATTATTCTAAGT
1 TTTATCATATATTATCATTCTAAGT
22633770 TTT
1 TTT
22633773 CATGTGTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 19 0.79
25 5 0.21
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.60
Consensus pattern (25 bp):
TTTATCATATATTATCATTCTAAGT
Found at i:22633831 original size:22 final size:23
Alignment explanation
Indices: 22633788--22633831 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
22633778 GTAATTACTT
*
22633788 TTTTAATTTATCATATATTATTA
1 TTTTAATTTACCATATATTATTA
*
22633811 TTTTAATTT-CCATCTATTATT
1 TTTTAATTTACCATATATTATT
22633832 TTATATAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.30, C:0.09, G:0.00, T:0.61
Consensus pattern (23 bp):
TTTTAATTTACCATATATTATTA
Found at i:22642189 original size:143 final size:143
Alignment explanation
Indices: 22641922--22642573 Score: 928
Period size: 143 Copynumber: 4.6 Consensus size: 143
22641912 ATTGAAGTCA
* * * * *
22641922 TTACAGTGAATCTTATCTTTCTAAAGTTGCAGCGGAGCAGA-TGAATCCACCAGCCTTATCTCAC
1 TTACGGTGAATCTTATCTTCCTGAAGTTGCAGCGGAGCAGATTGAAGCCACCAGCCTTATCTCCC
* * * *
22641986 TGAAGTTGCAACGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGGCGTTACAATGGAACAGA
66 TGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTACAGTGGAACAGA
22642051 TTAAAGCTACAAG
131 TTAAAGCTACAAG
* * *
22642064 TTACGGCGAATCTTATCTTCCTGAAGTTGCAGCAGAGCAAATTGAAGCCACCAGCCTTATCTCCC
1 TTACGGTGAATCTTATCTTCCTGAAGTTGCAGCGGAGCAGATTGAAGCCACCAGCCTTATCTCCC
* * ** *
22642129 TGAAGTTGCAGTGGAGCAGACTGAAGACAGCGAATCTTATTTCTCTGGCGTTGGAGTGGAATAGA
66 TGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTACAGTGGAACAGA
22642194 TTAAAGCTACAAG
131 TTAAAGCTACAAG
* * ** *
22642207 TTACGTTGAATCTTATCTTCCTAAAGTTATAGCGGAGCAGATTGAAGCCACTAGCCTTATCTCCC
1 TTACGGTGAATCTTATCTTCCTGAAGTTGCAGCGGAGCAGATTGAAGCCACCAGCCTTATCTCCC
* ** * * *
22642272 TAAAGTTGCAATGGAGCAGACTGAATACAGCGAATCTTATTTCCCTAGTGTTACAGTGGAACAGA
66 TGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTACAGTGGAACAGA
22642337 TTAAAGCTACAAG
131 TTAAAGCTACAAG
* *
22642350 TTACGGTGAATCTTATCTTCCTGAAATTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCC
1 TTACGGTGAATCTTATCTTCCTGAAGTTGCAGCGGAGCAGATTGAAGCCACCAGCCTTATCTCCC
* * * * **
22642415 TGAAGTTGTAGCGGAGCAGACTGAAGACAACGAATCTTATTTCCCTGACATTGTAGTGGAACAGA
66 TGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTACAGTGGAACAGA
22642480 TTAAAGCTACAAG
131 TTAAAGCTACAAG
* * * * *
22642493 TTATGGTGAATCTTATCTTCATGAAGTTGCAGTGGAGTAGATTGAAGCCACCAGCCTTATCTCCA
1 TTACGGTGAATCTTATCTTCCTGAAGTTGCAGCGGAGCAGATTGAAGCCACCAGCCTTATCTCCC
22642558 TGAAGTTGCAGCGGAG
66 TGAAGTTGCAGCGGAG
22642574 TAGATCGAAG
Statistics
Matches: 450, Mismatches: 59, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
142 35 0.08
143 415 0.92
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (143 bp):
TTACGGTGAATCTTATCTTCCTGAAGTTGCAGCGGAGCAGATTGAAGCCACCAGCCTTATCTCCC
TGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTACAGTGGAACAGA
TTAAAGCTACAAG
Found at i:22642469 original size:45 final size:43
Alignment explanation
Indices: 22642357--22642479 Score: 113
Period size: 45 Copynumber: 2.8 Consensus size: 43
22642347 AAGTTACGGT
* * *
22642357 GAATCTTATCTT-CCTGAAATTGCAGTGGAGCAGATTGAAGCCAC
1 GAATCTTAT-TTCCCTG-AATTGTAGTGGAGCAGACTGAAGCAAC
* ** * *
22642401 CAGCCTTATCTCCCTGAAGTTGTAGCGGAGCAGACTGAAGACAAC
1 GAATCTTATTTCCCTGAA-TTGTAGTGGAGCAGACTGAAG-CAAC
*
22642446 GAATCTTATTTCCCTGACATTGTAGTGGAACAGA
1 GAATCTTATTTCCCTGA-ATTGTAGTGGAGCAGA
22642480 TTAAAGCTAC
Statistics
Matches: 61, Mismatches: 14, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
43 3 0.05
44 28 0.46
45 29 0.48
46 1 0.02
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (43 bp):
GAATCTTATTTCCCTGAATTGTAGTGGAGCAGACTGAAGCAAC
Found at i:22643056 original size:23 final size:23
Alignment explanation
Indices: 22643034--22643077 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
22643024 AGGTGGCCCA
22643034 AAAT-CAAGTTTCCAGAAACCCC
1 AAATCCAAGTTTCCAGAAACCCC
22643056 AAATCCAAGTTTCCAGAAACCC
1 AAATCCAAGTTTCCAGAAACCC
22643078 TTAGGGTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 4 0.19
23 17 0.81
ACGTcount: A:0.41, C:0.32, G:0.09, T:0.18
Consensus pattern (23 bp):
AAATCCAAGTTTCCAGAAACCCC
Done.