Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60343961
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 596159 characters in sequence are not A, C, G, or T
File 76 of 204
Found at i:22864343 original size:32 final size:33
Alignment explanation
Indices: 22864139--22864376 Score: 259
Period size: 34 Copynumber: 7.2 Consensus size: 33
22864129 ATGTTTTATT
*
22864139 TATTTCCGAATTGAATTGTATATATATATACTTA
1 TATTGCCGAATTGAATTGTATATATATATAC-TA
** *
22864173 TATTGCTAAATTGAATTGTATATATATAAACTTA
1 TATTGCCGAATTGAATTGTATATATATATAC-TA
22864207 TATTGCCGAATTGAATTGTATATATATATACTTA
1 TATTGCCGAATTGAATTGTATATATATATAC-TA
* ** *
22864241 TATTGTCGAATTGAATTGTATAGGTATACACCTA
1 TATTGCCGAATTGAATTGTATATATATATA-CTA
*
22864275 T-TT-CTGAATTGAATTGTATATATATATACTTA
1 TATTGCCGAATTGAATTGTATATATATATAC-TA
** * *
22864307 TATTGCCGAATTGAATTGTATAGGTATACAC-C
1 TATTGCCGAATTGAATTGTATATATATATACTA
* * *
22864339 TATTGCCGAATTGATTTGTATATGTATTTA-TA
1 TATTGCCGAATTGAATTGTATATATATATACTA
22864371 TATTGC
1 TATTGC
22864377 TAATTTGATT
Statistics
Matches: 173, Mismatches: 26, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
31 1 0.01
32 55 0.32
33 4 0.02
34 112 0.65
35 1 0.01
ACGTcount: A:0.34, C:0.09, G:0.13, T:0.44
Consensus pattern (33 bp):
TATTGCCGAATTGAATTGTATATATATATACTA
Found at i:22866432 original size:41 final size:41
Alignment explanation
Indices: 22866381--22866572 Score: 278
Period size: 41 Copynumber: 4.7 Consensus size: 41
22866371 CATTGAATGT
*
22866381 AAGGGGTTGCTAAGTGCAGATTCCCTAAATCATTGATCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCTGAATCATTGATCAAA
** * *
22866422 AATTGGTTGCTAAGTGCAGATTCCCCGAATCATTGATCGAA
1 AAGGGGTTGCTAAGTGCAGATTCCCTGAATCATTGATCAAA
* *
22866463 AAGGGGTTGCTAAGTGCAAATTCCCCGAATCATTGAT-AGAA
1 AAGGGGTTGCTAAGTGCAGATTCCCTGAATCATTGATCA-AA
* *
22866504 AAGGGGTTGCTAAATGCAGATTCCCTGAATCACTGATCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCTGAATCATTGATCAAA
*
22866545 AAGGGGTTGCTAAGTGTAGATTCCCTGA
1 AAGGGGTTGCTAAGTGCAGATTCCCTGA
22866573 GGGGTTGCTA
Statistics
Matches: 134, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
41 133 0.99
42 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (41 bp):
AAGGGGTTGCTAAGTGCAGATTCCCTGAATCATTGATCAAA
Found at i:22866582 original size:26 final size:26
Alignment explanation
Indices: 22866546--22866595 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
22866536 CTGATCAAAA
22866546 AGGGGTTGCTAAGTGTAGATTCCCTG
1 AGGGGTTGCTAAGTGTAGATTCCCTG
*
22866572 AGGGGTTGCTAAGTGTTGATTCCC
1 AGGGGTTGCTAAGTGTAGATTCCC
22866596 CAAATTATTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.18, C:0.16, G:0.34, T:0.32
Consensus pattern (26 bp):
AGGGGTTGCTAAGTGTAGATTCCCTG
Found at i:22866664 original size:43 final size:41
Alignment explanation
Indices: 22866572--22866691 Score: 150
Period size: 42 Copynumber: 2.9 Consensus size: 41
22866562 AGATTCCCTG
* ** *
22866572 AGGGGTTGCTAAGTGTTGATTCCCCAAATTATTGATTCTAA
1 AGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTCTAA
* *
22866613 AGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAA
1 AGG-GGTTGCTAAGTGCTGATTCC-CCGTATCATTGATTCT-AA
*
22866657 AGGGGTTGCTATGTGCTGATTCCCCGTATCATTGA
1 AGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGA
22866692 ATATAATGTG
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
41 3 0.04
42 30 0.44
43 30 0.44
44 5 0.07
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.35
Consensus pattern (41 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTCTAA
Found at i:22889455 original size:93 final size:93
Alignment explanation
Indices: 22889292--22889482 Score: 321
Period size: 93 Copynumber: 2.1 Consensus size: 93
22889282 CCAACAAACT
* * *
22889292 AAACTAATTGGACTAGACTAAAACTCACATATGATGTAATTTGGAGACCCAAGTATAGAATTTCA
1 AAACTAATTGGACTAGACTAAAACTCACACATGATGTAACTTGGAGACCCAAGTATAGAATTGCA
*
22889357 CATGATAAATCTCAAATCTAAGTGCTTA
66 CATGATAAATCTCAAATCTAAGTACTTA
22889385 AAACTCAA-TGGACTAGACTAAAACTCACACATGATGTAACTTGGAGACCCAAGTATAGAATTGC
1 AAACT-AATTGGACTAGACTAAAACTCACACATGATGTAACTTGGAGACCCAAGTATAGAATTGC
*
22889449 ATATGATAAATCTCAAATCTAAGTACTTA
65 ACATGATAAATCTCAAATCTAAGTACTTA
22889478 AAACT
1 AAACT
22889483 GAATACCTTC
Statistics
Matches: 92, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
93 90 0.98
94 2 0.02
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.27
Consensus pattern (93 bp):
AAACTAATTGGACTAGACTAAAACTCACACATGATGTAACTTGGAGACCCAAGTATAGAATTGCA
CATGATAAATCTCAAATCTAAGTACTTA
Found at i:22891848 original size:37 final size:39
Alignment explanation
Indices: 22891717--22891933 Score: 200
Period size: 40 Copynumber: 5.6 Consensus size: 39
22891707 TGAATGATGT
* * * *
22891717 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTATAA
** *
22891757 CCGAACTAAGATTCGAAGGCATTTGTGCGAGTTTACTAT--
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCGAG-TTACTATAA
* *
22891796 TCGGGCTAAGCCCGAAGGCA-TTGAT-CGAGTTACTA-AA
1 CCGGGCTAAGTCCGAAGGCATTTG-TGCGAGTTACTATAA
22891833 TCCGGG-TAAGTCCGAA-GCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATAA
*
22891871 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAA
* *
22891911 CCGGGCT-TGTCCAAAGGCATTTG
1 CCGGGCTAAGTCCGAAGGCATTTG
22891934 AACGAGTAGC
Statistics
Matches: 147, Mismatches: 17, Indels: 28
0.77 0.09 0.15
Matches are distributed among these distances:
36 10 0.07
37 34 0.23
38 31 0.21
39 14 0.10
40 45 0.31
41 13 0.09
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:22891947 original size:38 final size:40
Alignment explanation
Indices: 22891772--22891940 Score: 133
Period size: 37 Copynumber: 4.4 Consensus size: 40
22891762 CTAAGATTCG
** * *
22891772 AAGGCATTTGTGCGAGTTTACTAT--TCGGGCTAAG-CCCG
1 AAGGCATTTGAACGAG-TTACTATAACCGGGCTAAGTCCCA
* *
22891810 AAGGCA-TTGATCGAGTTACTA-AATCCGGG-TAAGT-CCG
1 AAGGCATTTGAACGAGTTACTATAA-CCGGGCTAAGTCCCA
** *
22891847 AA-GCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCG
1 AAGGCATTTGAACGAGTTACTATAACCGGGCTAAGTCCCA
* ** *
22891886 AAGGTATTTGTGCGAGTTACTATAACCGGGCT-TGT-CCA
1 AAGGCATTTGAACGAGTTACTATAACCGGGCTAAGTCCCA
22891924 AAGGCATTTGAACGAGT
1 AAGGCATTTGAACGAGT
22891941 AGCTATATCC
Statistics
Matches: 111, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
36 9 0.08
37 34 0.31
38 33 0.30
39 7 0.06
40 28 0.25
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
AAGGCATTTGAACGAGTTACTATAACCGGGCTAAGTCCCA
Found at i:22899024 original size:119 final size:120
Alignment explanation
Indices: 22898808--22899032 Score: 298
Period size: 119 Copynumber: 1.9 Consensus size: 120
22898798 TTGAATGATG
*
22898808 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
22898873 GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
66 GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
* * * **
22898928 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
22898990 TTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
64 TTGTGCGAGATACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
22899033 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
118 2 0.02
119 70 0.76
120 20 0.22
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:22899039 original size:40 final size:40
Alignment explanation
Indices: 22898808--22899032 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
22898798 TTGAATGATG
* * * *
22898808 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
22898848 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
22898888 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
22898928 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
22898967 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
22899008 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
22899033 AACGAGTAGC
Statistics
Matches: 167, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
39 35 0.21
40 122 0.73
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:22899054 original size:79 final size:79
Alignment explanation
Indices: 22898815--22899065 Score: 271
Period size: 79 Copynumber: 3.2 Consensus size: 79
22898805 ATGTCCGGGC
* * * *
22898815 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCG
*
22898878 AGATACTAAATCCGGAC
64 AGATACTAAATCCGG-T
*
22898895 TAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCG
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCG
*
22898957 AGTTACTAAATCCGGGT
64 AGATACTAAATCC-GGT
* * **
22898974 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
*
22899039 -TAGCTATATCCGGT
66 ATA-CTAAATCCGGT
* *
22899053 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
22899066 TACGTGATTT
Statistics
Matches: 147, Mismatches: 15, Indels: 19
0.81 0.08 0.10
Matches are distributed among these distances:
78 1 0.01
79 83 0.56
80 55 0.37
81 8 0.05
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
ATACTAAATCCGGT
Found at i:22904438 original size:4 final size:4
Alignment explanation
Indices: 22904431--22904455 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
22904421 TATTCAAAAT
22904431 ATTA ATTA ATTA ATTA ATTA ATTA A
1 ATTA ATTA ATTA ATTA ATTA ATTA A
22904456 ATGGTGAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
ATTA
Found at i:22911685 original size:43 final size:43
Alignment explanation
Indices: 22911627--22911827 Score: 260
Period size: 43 Copynumber: 4.7 Consensus size: 43
22911617 AATATTGGCG
* *
22911627 CACATAGTGCATCATCGGATAAACTGAAGTATCTATACTAGCA
1 CACACAGTGCATCATCGGATAAACCGAAGTATCTATACTAGCA
* *
22911670 CATACAGTGCATCATC-GACTAAACCGAAGTATCTATACTGGCA
1 CACACAGTGCATCATCGGA-TAAACCGAAGTATCTATACTAGCA
* *
22911713 CGCATAGTGCATCATCGGATAAACCGAAGTATCTATACTAGCA
1 CACACAGTGCATCATCGGATAAACCGAAGTATCTATACTAGCA
* * * * * *
22911756 GACACAGTGCATTATCGGATAAACCAAAATTTATATACTAGCA
1 CACACAGTGCATCATCGGATAAACCGAAGTATCTATACTAGCA
* *
22911799 CATATAGTGCATCATCGGATAAACCGAAG
1 CACACAGTGCATCATCGGATAAACCGAAG
22911828 CCTAATCGTA
Statistics
Matches: 134, Mismatches: 22, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
42 2 0.01
43 130 0.97
44 2 0.01
ACGTcount: A:0.37, C:0.22, G:0.17, T:0.24
Consensus pattern (43 bp):
CACACAGTGCATCATCGGATAAACCGAAGTATCTATACTAGCA
Found at i:22911779 original size:86 final size:86
Alignment explanation
Indices: 22911627--22911827 Score: 287
Period size: 86 Copynumber: 2.3 Consensus size: 86
22911617 AATATTGGCG
* *
22911627 CACATAGTGCATCATCGGATAAACTGAAGTATCTATACTAGCACATACAGTGCATCATCGACTAA
1 CACATAGTGCATCATCGGATAAACCGAAGTATCTATACTAGCACACACAGTGCATCATCGACTAA
* * * *
22911692 ACCGAAGTATCTATACTGGCA
66 ACCAAAATATATATACTAGCA
* * *
22911713 CGCATAGTGCATCATCGGATAAACCGAAGTATCTATACTAGCAGACACAGTGCATTATCGGA-TA
1 CACATAGTGCATCATCGGATAAACCGAAGTATCTATACTAGCACACACAGTGCATCATC-GACTA
*
22911777 AACCAAAATTTATATACTAGCA
65 AACCAAAATATATATACTAGCA
*
22911799 CATATAGTGCATCATCGGATAAACCGAAG
1 CACATAGTGCATCATCGGATAAACCGAAG
22911828 CCTAATCGTA
Statistics
Matches: 102, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
86 100 0.98
87 2 0.02
ACGTcount: A:0.37, C:0.22, G:0.17, T:0.24
Consensus pattern (86 bp):
CACATAGTGCATCATCGGATAAACCGAAGTATCTATACTAGCACACACAGTGCATCATCGACTAA
ACCAAAATATATATACTAGCA
Found at i:22920701 original size:25 final size:25
Alignment explanation
Indices: 22920679--22920731 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
22920669 AACGTTCTGT
*
22920679 TTTTTTTTC-TTTTCCTTCTTTCTC
1 TTTTCTTTCTTTTTCCTTCTTTCTC
* *
22920703 TTTTCTTTCTTTTTCTTTCTTTTTC
1 TTTTCTTTCTTTTTCCTTCTTTCTC
22920728 TTTT
1 TTTT
22920732 TCCCTTTCGT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 8 0.32
25 17 0.68
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (25 bp):
TTTTCTTTCTTTTTCCTTCTTTCTC
Found at i:22920718 original size:10 final size:10
Alignment explanation
Indices: 22920694--22920730 Score: 65
Period size: 10 Copynumber: 3.6 Consensus size: 10
22920684 TTTCTTTTCC
22920694 TTCTTTCTCTT
1 TTCTTTCT-TT
22920705 TTCTTTCTTT
1 TTCTTTCTTT
22920715 TTCTTTCTTT
1 TTCTTTCTTT
22920725 TTCTTT
1 TTCTTT
22920731 TTCCCTTTCG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 18 0.69
11 8 0.31
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (10 bp):
TTCTTTCTTT
Found at i:22920731 original size:15 final size:15
Alignment explanation
Indices: 22920682--22920733 Score: 68
Period size: 15 Copynumber: 3.4 Consensus size: 15
22920672 GTTCTGTTTT
*
22920682 TTTTTCTTTTCCTTC
1 TTTTTCTTTTCTTTC
*
22920697 TTTCTCTTTTCTTTC
1 TTTTTCTTTTCTTTC
*
22920712 TTTTTCTTTCTTTTTC
1 TTTTTCTTT-TCTTTC
22920728 TTTTTC
1 TTTTTC
22920734 CCTTTCGTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
15 21 0.66
16 11 0.34
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTTCTTTTCTTTC
Found at i:22920744 original size:18 final size:16
Alignment explanation
Indices: 22920708--22920751 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 16
22920698 TTCTCTTTTC
*
22920708 TTTCTTTTTCTTTCTT
1 TTTCTTTTTCTTTCGT
22920724 TTTCTTTTTCCCTTTCGT
1 TTTCTTTTT--CTTTCGT
22920742 TTTCATTTTT
1 TTTC-TTTTT
22920752 TTACATCGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 9 0.38
18 10 0.42
19 5 0.21
ACGTcount: A:0.02, C:0.20, G:0.02, T:0.75
Consensus pattern (16 bp):
TTTCTTTTTCTTTCGT
Found at i:22922879 original size:28 final size:29
Alignment explanation
Indices: 22922847--22922901 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
22922837 TGAGAATAAA
* *
22922847 TTTGTC-AATATGGTATTTGTATTTTTAG
1 TTTGTCTAATATGGTATCTATATTTTTAG
*
22922875 TTTGTCTAATATGTTATCTATATTTTT
1 TTTGTCTAATATGGTATCTATATTTTT
22922902 GTGCTGCTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 6 0.26
29 17 0.74
ACGTcount: A:0.22, C:0.05, G:0.13, T:0.60
Consensus pattern (29 bp):
TTTGTCTAATATGGTATCTATATTTTTAG
Found at i:22923790 original size:19 final size:19
Alignment explanation
Indices: 22923757--22923795 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
22923747 AAATAATTGA
* *
22923757 AAATATTTTTTAAAAATCC
1 AAATATTTATAAAAAATCC
*
22923776 AAATATTTATAAAAATTCC
1 AAATATTTATAAAAAATCC
22923795 A
1 A
22923796 CAATTTATGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.38
Consensus pattern (19 bp):
AAATATTTATAAAAAATCC
Found at i:22940353 original size:20 final size:20
Alignment explanation
Indices: 22940328--22940373 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
22940318 ACTAGGATAT
*
22940328 TCACTTTCTTCTTTACTTAC
1 TCACTTACTTCTTTACTTAC
*
22940348 TCACTTACTTGTTTACTTAC
1 TCACTTACTTCTTTACTTAC
*
22940368 TTACTT
1 TCACTT
22940374 GCTTAAATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.17, C:0.26, G:0.02, T:0.54
Consensus pattern (20 bp):
TCACTTACTTCTTTACTTAC
Found at i:22940369 original size:16 final size:16
Alignment explanation
Indices: 22940344--22940374 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22940334 TCTTCTTTAC
22940344 TTACTCACTTACTTGT
1 TTACTCACTTACTTGT
*
22940360 TTACTTACTTACTTG
1 TTACTCACTTACTTG
22940375 CTTAAATAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.23, G:0.06, T:0.52
Consensus pattern (16 bp):
TTACTCACTTACTTGT
Found at i:22940823 original size:50 final size:50
Alignment explanation
Indices: 22940631--22940822 Score: 244
Period size: 50 Copynumber: 3.8 Consensus size: 50
22940621 TTTCCTGTAC
* * * ** * *
22940631 TGCCAATGCCATATCCCAGATATGGTCTTACATTGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGA
* *
22940681 TGCCCATGCCATGTCCCAGACATGGTCTTACA-GGGAACCTCTCATCTTAGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGG-ACCTCTCATC-TCGA
* *
22940732 -GCCAATGCCATGTACCAGACATGGTCTTACATGGGACCTCTTATCTCGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGA
*
22940781 TGCCAATTCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
22940823 TTACCCAAAT
Statistics
Matches: 123, Mismatches: 15, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
49 5 0.04
50 113 0.92
51 5 0.04
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGA
Found at i:22942521 original size:31 final size:32
Alignment explanation
Indices: 22942485--22942549 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
22942475 CTTAGATAAT
22942485 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
22942516 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
22942548 TT
1 TT
22942550 GTAATTTGCC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 9 0.27
32 24 0.73
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.48
Consensus pattern (32 bp):
TTTAAAGAGTTTTTATTAGGATTCAATTACTC
Found at i:22943128 original size:12 final size:12
Alignment explanation
Indices: 22943111--22943140 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
22943101 AAAAAAAAGC
22943111 AAAAACACAAAA
1 AAAAACACAAAA
*
22943123 AAAAACGCAAAA
1 AAAAACACAAAA
22943135 AAAAAC
1 AAAAAC
22943141 CGTAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.80, C:0.17, G:0.03, T:0.00
Consensus pattern (12 bp):
AAAAACACAAAA
Found at i:22943135 original size:13 final size:13
Alignment explanation
Indices: 22943119--22943152 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
22943109 GCAAAAACAC
22943119 AAAAAAAAACGCA
1 AAAAAAAAACGCA
* *
22943132 AAAAAAAACCGTA
1 AAAAAAAAACGCA
22943145 AAAAAAAA
1 AAAAAAAA
22943153 GTTGCCTACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.79, C:0.12, G:0.06, T:0.03
Consensus pattern (13 bp):
AAAAAAAAACGCA
Found at i:22948702 original size:31 final size:32
Alignment explanation
Indices: 22948666--22948730 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
22948656 CTTAGATAAT
22948666 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
22948697 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
22948729 TT
1 TT
22948731 GTAATTTGCC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 9 0.27
32 24 0.73
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.48
Consensus pattern (32 bp):
TTTAAAGAGTTTTTATTAGGATTCAATTACTC
Found at i:22949711 original size:19 final size:19
Alignment explanation
Indices: 22949676--22949716 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
22949666 ACTTTAAAAT
* *
22949676 CAAGTTAAAATTATTTTCA
1 CAAGTTAAAAATATTTTAA
*
22949695 CAAGTTAAAAATCTTTTAA
1 CAAGTTAAAAATATTTTAA
22949714 CAA
1 CAA
22949717 ATCAAATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.46, C:0.12, G:0.05, T:0.37
Consensus pattern (19 bp):
CAAGTTAAAAATATTTTAA
Found at i:22956959 original size:17 final size:18
Alignment explanation
Indices: 22956928--22956962 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
22956918 TAAAGAAAAA
22956928 TTTTTTAAATCTTTTGTAT
1 TTTTTTAAA-CTTTTGTAT
22956947 TTTTTTAAA-TTTTGTA
1 TTTTTTAAACTTTTGTA
22956963 GATATTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
19 9 0.56
ACGTcount: A:0.23, C:0.03, G:0.06, T:0.69
Consensus pattern (18 bp):
TTTTTTAAACTTTTGTAT
Found at i:22957776 original size:17 final size:18
Alignment explanation
Indices: 22957743--22957778 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
22957733 TACTAAAATG
22957743 TGTATAATAAAATTAAAA
1 TGTATAATAAAATTAAAA
*
22957761 TGTATAAT-ATATTAAAA
1 TGTATAATAAAATTAAAA
22957778 T
1 T
22957779 AAAATTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.39
Consensus pattern (18 bp):
TGTATAATAAAATTAAAA
Found at i:22958476 original size:14 final size:14
Alignment explanation
Indices: 22958457--22958502 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
22958447 ACATTAACGA
22958457 ATAAATATATAAAT
1 ATAAATATATAAAT
*
22958471 ATAAATAAATAAAT
1 ATAAATATATAAAT
**
22958485 ATTTATATATAAA-
1 ATAAATATATAAAT
22958498 ATAAA
1 ATAAA
22958503 ATAAATTGAA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
13 3 0.12
14 23 0.88
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (14 bp):
ATAAATATATAAAT
Found at i:22959914 original size:22 final size:22
Alignment explanation
Indices: 22959888--22959934 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
22959878 AACGCAAGAA
*
22959888 TTTTG-AAACACAATATTTTTTT
1 TTTTGAAAACAC-AGATTTTTTT
*
22959910 TTTTGAAAACACGGATTTTTTT
1 TTTTGAAAACACAGATTTTTTT
22959932 TTT
1 TTT
22959935 AAAATAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 16 0.73
23 6 0.27
ACGTcount: A:0.28, C:0.09, G:0.09, T:0.55
Consensus pattern (22 bp):
TTTTGAAAACACAGATTTTTTT
Found at i:22960232 original size:5 final size:5
Alignment explanation
Indices: 22960222--22960246 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
22960212 AAATTATTTA
22960222 AAATT AAATT AAATT AAATT AAATT
1 AAATT AAATT AAATT AAATT AAATT
22960247 GAAAATATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AAATT
Found at i:22960423 original size:11 final size:11
Alignment explanation
Indices: 22960407--22960464 Score: 54
Period size: 10 Copynumber: 5.5 Consensus size: 11
22960397 AATTGAACCA
22960407 TTTTTCCTTCT
1 TTTTTCCTTCT
22960418 TTTTT-CTT-T
1 TTTTTCCTTCT
*
22960427 TTTTTTCTT-T
1 TTTTTCCTTCT
22960437 TTTTT--TTCTT
1 TTTTTCCTTC-T
22960447 TTTTTCCTCTCT
1 TTTTTCCT-TCT
22960459 TTTTTC
1 TTTTTC
22960465 TTTTTGTGCT
Statistics
Matches: 41, Mismatches: 0, Indels: 11
0.79 0.00 0.21
Matches are distributed among these distances:
8 2 0.05
9 6 0.15
10 18 0.44
11 5 0.12
12 8 0.20
13 2 0.05
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (11 bp):
TTTTTCCTTCT
Found at i:22960432 original size:21 final size:21
Alignment explanation
Indices: 22960407--22960469 Score: 87
Period size: 19 Copynumber: 3.0 Consensus size: 21
22960397 AATTGAACCA
22960407 TTTTTCCTTCTTTTTTCTTTT
1 TTTTTCCTTCTTTTTTCTTTT
22960428 TTTTT-CTT-TTTTTT-TTCTT
1 TTTTTCCTTCTTTTTTCTT-TT
22960447 TTTTTCCTCTCTTTTTTCTTTT
1 TTTTTCCT-TCTTTTTTCTTTT
22960469 T
1 T
22960470 GTGCTGGGCT
Statistics
Matches: 37, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
18 2 0.05
19 13 0.35
20 5 0.14
21 6 0.16
22 9 0.24
23 2 0.05
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (21 bp):
TTTTTCCTTCTTTTTTCTTTT
Found at i:22960440 original size:20 final size:20
Alignment explanation
Indices: 22960407--22960469 Score: 83
Period size: 20 Copynumber: 3.1 Consensus size: 20
22960397 AATTGAACCA
22960407 TTTTTCCTTCTTTTTTCTTT
1 TTTTTCCTTCTTTTTTCTTT
* *
22960427 TTTTTTCTT-TTTTTTTTCTT
1 TTTTTCCTTCTTTTTTCT-TT
22960447 TTTTTCCTCTCTTTTTTCTTT
1 TTTTTCCT-TCTTTTTTCTTT
22960468 TT
1 TT
22960470 GTGCTGGGCT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
19 7 0.19
20 17 0.47
21 5 0.14
22 7 0.19
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (20 bp):
TTTTTCCTTCTTTTTTCTTT
Found at i:22960609 original size:16 final size:16
Alignment explanation
Indices: 22960572--22960621 Score: 64
Period size: 16 Copynumber: 3.0 Consensus size: 16
22960562 AAATGGCCTG
*
22960572 CTGCTTTTTTTCTTTTT
1 CTGCTTTGTTT-TTTTT
*
22960589 TTGCTTTGTTTTTTTT
1 CTGCTTTGTTTTTTTT
22960605 CTGCTTTGTTTTCTTTT
1 CTGCTTTGTTTT-TTTT
22960622 TGGGCCGGCC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 16 0.55
17 13 0.45
ACGTcount: A:0.00, C:0.14, G:0.10, T:0.76
Consensus pattern (16 bp):
CTGCTTTGTTTTTTTT
Found at i:22960736 original size:16 final size:16
Alignment explanation
Indices: 22960717--22960780 Score: 65
Period size: 16 Copynumber: 3.9 Consensus size: 16
22960707 ATATAATTTA
*
22960717 TTTTTTCTTTTTCTTT
1 TTTTTTCTTCTTCTTT
* *
22960733 TTTTTCTTTTTTTCTTT
1 TTTTT-TCTTCTTCTTT
* *
22960750 CTTTTTCTTCTTCTTC
1 TTTTTTCTTCTTCTTT
*
22960766 TTCTTTCTTCTTCTT
1 TTTTTTCTTCTTCTT
22960781 CTTCTAGTCG
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
16 26 0.65
17 14 0.35
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTTTTCTTCTTCTTT
Found at i:22960738 original size:9 final size:9
Alignment explanation
Indices: 22960724--22960777 Score: 56
Period size: 10 Copynumber: 5.9 Consensus size: 9
22960714 TTATTTTTTC
22960724 TTTTTCTTT
1 TTTTTCTTT
22960733 TTTTTC-TT
1 TTTTTCTTT
22960741 TTTTTCTTT
1 TTTTTCTTT
*
22960750 CTTTTTCTTC
1 -TTTTTCTTT
*
22960760 TTCTTCTTCT
1 TTTTTCTT-T
*
22960770 TTCTTCTT
1 TTTTTCTT
22960778 CTTCTTCTAG
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
8 8 0.21
9 15 0.38
10 16 0.41
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTTTCTTT
Found at i:22960760 original size:3 final size:3
Alignment explanation
Indices: 22960721--22960785 Score: 60
Period size: 3 Copynumber: 21.3 Consensus size: 3
22960711 AATTTATTTT
* * * * *
22960721 TTC TTT TTC TTT TTT TTC TT- TTT TTC TTTC TTT TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC -TTC TTC TTC TTC TTC TTC
22960766 TTC TTTC TTC TTC TTC TTC T
1 TTC -TTC TTC TTC TTC TTC T
22960786 AGTCGCGGCG
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
2 2 0.04
3 44 0.85
4 6 0.12
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (3 bp):
TTC
Found at i:22960782 original size:9 final size:9
Alignment explanation
Indices: 22960717--22960785 Score: 79
Period size: 9 Copynumber: 7.7 Consensus size: 9
22960707 ATATAATTTA
22960717 TTTT-TTCT
1 TTTTCTTCT
*
22960725 TTTTCTTTT
1 TTTTCTTCT
22960734 TTTTCTT-T
1 TTTTCTTCT
22960742 TTTTCTTTCT
1 TTTTC-TTCT
22960752 TTTTCTTCT
1 TTTTCTTCT
*
22960761 TCTTCTTCT
1 TTTTCTTCT
22960770 TTCTTCTTCT
1 TT-TTCTTCT
*
22960780 TCTTCT
1 TTTTCT
22960786 AGTCGCGGCG
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
8 10 0.19
9 29 0.55
10 14 0.26
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTTCTTCT
Found at i:22961167 original size:29 final size:30
Alignment explanation
Indices: 22961136--22961301 Score: 194
Period size: 29 Copynumber: 5.6 Consensus size: 30
22961126 CTTCTGGGCT
* *
22961136 AAAATGTAATTTTAAAAAAATTTA-GGGTT
1 AAAATGTAATTTTAAAAAAGTTTAGGGGTC
* * * *
22961165 AAAATATAATTTCAAGAAAGTTCAGGGGTC
1 AAAATGTAATTTTAAAAAAGTTTAGGGGTC
* * *
22961195 AAAATGCAATTTCAAAAAAGTTTAAGGGTC
1 AAAATGTAATTTTAAAAAAGTTTAGGGGTC
* *
22961225 ACAATGCAATTTT-AAAAAGTTTAGGGGTC
1 AAAATGTAATTTTAAAAAAGTTTAGGGGTC
*
22961254 AAAATGAAATTTT-AAAAAGTTTAGGGGTC
1 AAAATGTAATTTTAAAAAAGTTTAGGGGTC
*
22961283 AAAATGTAAATTTAAAAAA
1 AAAATGTAATTTTAAAAAA
22961302 ACACGAAATC
Statistics
Matches: 117, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
29 72 0.62
30 45 0.38
ACGTcount: A:0.47, C:0.06, G:0.17, T:0.30
Consensus pattern (30 bp):
AAAATGTAATTTTAAAAAAGTTTAGGGGTC
Found at i:22961244 original size:59 final size:58
Alignment explanation
Indices: 22961136--22961300 Score: 188
Period size: 59 Copynumber: 2.8 Consensus size: 58
22961126 CTTCTGGGCT
* * * * *
22961136 AAAATGTAATTTTAAAAAAATTT-AGGGTTAAAATATAATTTCAAGAAAGTTCAGGGGTC
1 AAAATG-AAATTTAAAAAAGTTTAAGGGTCAAAATGTAATTTTAA-AAAGTTCAGGGGTC
* * * *
22961195 AAAATGCAATTTCAAAAAAGTTTAAGGGTCACAATGCAATTTTAAAAAGTTTAGGGGTC
1 AAAATGAAATTT-AAAAAAGTTTAAGGGTCAAAATGTAATTTTAAAAAGTTCAGGGGTC
* * *
22961254 AAAATGAAATTTTAAAAAGTTTAGGGGTCAAAATGTAAATTTAAAAA
1 AAAATGAAATTTAAAAAAGTTTAAGGGTCAAAATGTAATTTTAAAAA
22961301 AACACGAAAT
Statistics
Matches: 89, Mismatches: 15, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
58 34 0.38
59 39 0.44
60 16 0.18
ACGTcount: A:0.47, C:0.06, G:0.17, T:0.30
Consensus pattern (58 bp):
AAAATGAAATTTAAAAAAGTTTAAGGGTCAAAATGTAATTTTAAAAAGTTCAGGGGTC
Found at i:22961886 original size:78 final size:79
Alignment explanation
Indices: 22961464--22965379 Score: 3027
Period size: 78 Copynumber: 50.8 Consensus size: 79
22961454 TACCTAGGTG
* * * ** *
22961464 TGTGGCCCGAGGCTCAACTCACCTCTAGCATTATGAGTTTCTTTTTGAAAAATAGAAATTTAAAA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
* *
22961529 G--ATACCTCGGTA
66 GAAATACCTCAGCA
* * * *
22961541 TGTGA-CCTAAGCTCAACTCACCTCTCGCAATATGAGTTCATTTTAGAAAAAACCA-AAATTTAA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAAA-CAGAAATTTAA
*
22961604 AAGAAATACCTCGGCA
64 AAGAAATACCTCAGCA
* * *
22961620 TGTG-TCCGAGGCTCAAATTACCTCTCGCAATATGAGTTGATTTTTCTTTATATGAAAAACAGAA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA------TTT-T-TGAAAAACAGAA
* * *
22961684 ATTTAAAAAAAAAATACATTAGC-
58 ATTT--AAAAGAAATACCTCAGCA
*
22961707 -GTGACCCGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAA-A-AAA-TT-A
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTTAA
*
22961767 AA-AAATACCTCGGCA
64 AAGAAATACCTCAGCA
* *
22961782 TGTGACCCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAGAAATTTAAAA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
*
22961847 GAAATACCTCGGCA
66 GAAATACCTCAGCA
* * * * * **
22961861 TGTG-TCCAAGGCTCAACTCATCTCTCACAATATAAGTTGATTTTAAAAAAAAAACAGAAA-TT-
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT---TGAAAAACAGAAATTTA
*
22961923 -GA-AAATACCTCAGC-
63 AAAGAAATACCTCAGCA
* * * **
22961937 -GTGACCCGGGGCTCAACTCACTTCTCGCATTATGAGTTGATTTTTTTTTTAAAACTAGAAA-TT
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTGAAAAAC-AGAAATTT
* *
22962000 AAAA-AAGATACCTCGGCG
62 AAAAGAA-ATACCTCAGCA
22962018 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
22962083 GAAATACCTCAGCA
66 GAAATACCTCAGCA
* * *
22962097 TGTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTAAAAAACAG-AATTT--GA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
*
22962157 -AAATACCTTAG--
66 GAAATACCTCAGCA
*
22962168 TGTGACCCGAGGCTCAACTCACCTCTCTTTTTTTCTGCATTATGAGTTGATTTTTTTTGAAAAAC
1 TGTGACCCGAGGCTCAACTCA-C-CTC------TC-GCAATATGAGTTGA---TTTTTGAAAAAC
* * **
22962233 AAAAATTTAAAAGAAATACTTTGGCA
54 AGAAATTTAAAAGAAATACCTCAGCA
* * *
22962259 TGTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTCATTTTTAAAAAACAGAAATTT---A
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
22962320 -AAATACCTCAGC-
66 GAAATACCTCAGCA
* * *
22962332 -GTGACCCGAGGCTCAACTCACCTCTCGCATTATAAGTTGATTTTTTTGAAAAAC-GAAAATTAA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTTAA
* * * *
22962395 AAAAAATGCCTCGGCG
64 AAGAAATACCTCAGCA
* * *
22962411 TATGACCCGAGGCTCAACTCACCTCTAGCAATATGA-TTGGATTTTTGAAAAACAAAAATTTAAA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-GATTTTTGAAAAACAGAAATTTAAA
*
22962475 AGAAATACCTCGGCA
65 AGAAATACCTCAGCA
* * * ** *
22962490 TGTG-TCCGAGGCTCAACTCACCTCTTGCAATATGAGATGATTTTAAAAAAACAGAAA-TT--GA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
22962551 -AAATACCTCAGC-
66 GAAATACCTCAGCA
* * ** * *
22962563 -GTGACACGAGGCTCAACTCACCTCTCGCAATATTAGTTGATTTTAAAAAAAACA-AAAATT--G
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT-TGAAAAACAGAAATTTAAA
*
22962624 A-AAATACCTCAGCG
65 AGAAATACCTCAGCA
* *
22962638 TGTGACCCGAGGCTCAACTCAACTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
* * *
22962703 TAAATACATCGGCA
66 GAAATACCTCAGCA
* ** *
22962717 TGTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTAAAAAAACATAAA-TT----
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
22962775 GAAACTACCTCAGC-
66 GAAA-TACCTCAGCA
* * * *
22962789 -GTGACCCAAGGCTTAACTCACCTCTCGCATTATGAGTTGATTTTTTTGAAAAACA-AAACTT-A
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTTAA
* *
22962851 AA-AAATACCCCGGCA
64 AAGAAATACCTCAGCA
* *
22962866 TGTGACCCGAGACTCAACTCACCTCTCGCAATATGAGTTGAATTTT-ATAAAACAGAAATTTAAA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAAACAGAAATTTAAA
*
22962930 AGAAATACCTCGGCA
65 AGAAATACCTCAGCA
* * ***
22962945 TGTG-TCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTAAAAAAAACAGAAATTT---A
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
22963006 -AAATACCTCAGC-
66 GAAATACCTCAGCA
* * *
22963018 -GTGACCCGAGGCTCAACTCACCGCTCGCAATATGAGTTGAATTTTGTAAAACAGAAATTTAAAA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
*
22963082 GAAATACCTCGGCA
66 GAAATACCTCAGCA
* * * *** *
22963096 TGTG-TCCAAGGCTCAACTCACCTCTCTCAATATGAGTTGATTTAAAAAAAAACAGAAA-TT--G
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT-TTGAAAAACAGAAATTTAAA
22963157 A-AAATACCTCAGC-
65 AGAAATACCTCAGCA
* * * *
22963170 -GTGACCCGAGGCTCAACTCACTTCTCACATTATGAGTTGATTATTTTTTTTTGAAAAATAGAAA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG---A----TTTTTGAAAAACAGAAA
* *
22963234 -TTAAGAA-AGATACCTCAGCG
59 TTTAA-AAGAAATACCTCAGCA
22963254 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
22963319 GAAATA--T--G--
66 GAAATACCTCAGCA
* * * *** *
22963327 T-T----TGAGGCTCAACTCACCTGTCGCAATATAAGTTGATTTAAAAAAAACAGAAA-TT---G
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
*
22963383 GAACTACCTCAGC-
66 GAAATACCTCAGCA
* * *
22963396 -GTGACCCGAGGCTCAACTCACCTCTCGCATTCTAAGTTGATTTTTTTGAAAAACAGAAA-TT-A
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTTAA
* * *
22963458 AA-AAATACCCCGGCG
64 AAGAAATACCTCAGCA
* * * * *
22963473 TGTGACTCGAGGCTCAACTAACCTCTCGTAATATGAGTTGAATTTTGAAAAACAAAAATTTAAAA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
*
22963538 GAAATACCTCGGCA
66 GAAATACCTCAGCA
* * * * *** **
22963552 TGTG-TCCAAGGCTTAACTCACCTCTCGCAATATGAGTTAATTTAAAAAAAAAAACA-AAACATA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT---TTGAAAAACAGAAATTTA
*
22963615 AATTGAAAATACCTCAGC-
63 AA-AG-AAATACCTCAGCA
* * *
22963633 -GTGACCCGAGGCTCAACTCACTTCTCGC------A-TT-A----TGAAAAATAGAAATTAAAAA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT-TAAA
* * * ** *
22963685 ACATACCTCAGCGTGTGACC
65 AGA-A-AT-A-CCTCAG-CA
* * * * * * * * *** * * * ** **
22963705 TGAGGCTC-A-ACTCACCTCTCACAATAT-G-AGT-TGA-TT--TTTGAAAAACAGAAATTTAAA
1 TGTGACCCGAGGCTCA--ACTCAC-CTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTA
* *
22963762 AGAA-AT--ACCTCGGCA
63 A-AAGAAATACCTCAGCA
* * **
22963777 TGTGTA--CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAA-AAAAATAGAAA
1 TGTG-ACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAA
* *
22963839 TTAAAAATACCTTAGC-
65 --AGAAATACCTCAGCA
*
22963855 -GTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTGTTTTGAAAAACAGAAATTTA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--T-TTTTGAAAAACAGAAATTTA
22963919 AAAGAAATACCTC-GACA
63 AAAGAAATACCTCAG-CA
* * * ** * **
22963936 TGTG-TCCAAGGCTCAACACACCTCTTACAATATAAGTTGATTTTAAAAAAAAAACAGAAA-TT-
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT---TGAAAAACAGAAATTTA
*
22963998 -GA-AAATACCTCAGC-
63 AAAGAAATACCTCAGCA
* * * ** *
22964012 -GTGACCCGGGGCTCAACTCACTTCTCGCATTATGAGTTGATTTTTTTTTGAAAATTA-AAAATT
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTGAAAAACAGAAATTT
* *
22964075 AAAA-AAGATACCTCGGCG
62 AAAAGAA-ATACCTCAGCA
22964093 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
22964158 GAAATACCTCAGCA
66 GAAATACCTCAGCA
* * *
22964172 TGTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTAAAAAACAG-AATTT--GA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
*
22964232 -AAATACCTTAG--
66 GAAATACCTCAGCA
*
22964243 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAACAGAAATTT---A
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
22964305 -AAATACCTCAGC-
66 GAAATACCTCAGCA
* * * *
22964317 -GTGACCCGGGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTTGAAAAATAGAAA-TTAG
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTTAA
*
22964380 AA-AAATACCTCAGCG
64 AAGAAATACCTCAGCA
* * * *
22964395 TGTGACCCGAGGCTTAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAACCAGAAATCTAAAA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
* *
22964460 GAAATACATCGGCA
66 GAAATACCTCAGCA
* **
22964474 TGTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTAAAAAAACAGAAA-TT----
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
22964532 GAAACTACCTCAGC-
66 GAAA-TACCTCAGCA
*
22964546 -GTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTTGAAAAACAGAAA-TT-A
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTTAA
* *
22964608 AA-AAATACC-CTGGCG
64 AAGAAATACCTC-AGCA
* * * * * *
22964623 TGTAACCTGAGACTCAACTCTCCTCTCGCAGTATGAGTTGATTTTTTAAAAACAGAAATTTAAAA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
*
22964688 GAAATACCTCGGCA
66 GAAATACCTCAGCA
* * * * * * *** *
22964702 TGTG-TCCAAGGCTCAACTCACCTCTCACAATATGAGTTGAATTTT-AAAAAAAAAAACAGAATT
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAA-A
*
22964765 TGAAAATACCTCAGC-
65 AG-AAATACCTCAGCA
* * *
22964780 -GTGACCCGAGGCTCAACTCACTTCTCGCACTATGAGTTGATTTTTTTTTTGAAAAATAGAAA-T
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-----TTTTTGAAAAACAGAAATT
* *
22964843 TAAAA-AAGATACATCGGCA
61 TAAAAGAA-ATACCTCAGCA
* ***
22964862 TGTGACCCGATGCTCAACTCACCTCTCGCAATATGAGTTGATTTAAAAAAAACAGAAATTT---A
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
22964924 -AAATACCTCAGC-
66 GAAATACCTCAGCA
* * *
22964936 -GTGACCCGAGGCTCAACTCACCTCTCGTATTATCAGTTGATTTTTTTGAAAAACAGAAA-TT--
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTTAA
* * **
22964997 AA-AAATATCTCGGTG
64 AAGAAATACCTCAGCA
** *
22965012 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAAAAATAGAAATTT---A
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
22965074 -AAATACCTCAGCA
66 GAAATACCTCAGCA
* * * * *
22965087 --TGACCTGAGGCTCAAATCACCTCTCGGATTATAAGTTGATTTTTTTGAAAAACAGAAA-TTAA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTTAA
* * *
22965149 AAAAAATACCTCGGCG
64 AAGAAATACCTCAGCA
* *
22965165 TGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGA-TTTTGAAAAATAGAAATTTAAAA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
22965229 GAAATACCTCAGCA
66 GAAATACCTCAGCA
* * *
22965243 TGTG-TCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTAAAAAACAGAAA-TT----
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
22965300 GAAACTACCTCAGC-
66 GAAA-TACCTCAGCA
* *
22965314 -GTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAAACAGAAATTGAA
1 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG--AAAAACAGAAATTTAA
22965378 AA
64 AA
22965380 ATATTTCTTG
Statistics
Matches: 3108, Mismatches: 458, Indels: 543
0.76 0.11 0.13
Matches are distributed among these distances:
64 5 0.00
66 8 0.00
67 6 0.00
68 50 0.02
69 2 0.00
70 8 0.00
71 63 0.02
72 150 0.05
73 343 0.11
74 139 0.04
75 195 0.06
76 289 0.09
77 273 0.09
78 678 0.22
79 306 0.10
80 144 0.05
81 130 0.04
82 100 0.03
83 59 0.02
84 9 0.00
85 52 0.02
86 20 0.01
87 33 0.01
88 17 0.01
89 10 0.00
90 15 0.00
91 4 0.00
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (79 bp):
TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAA
GAAATACCTCAGCA
Found at i:22963289 original size:85 final size:80
Alignment explanation
Indices: 22963143--22963513 Score: 232
Period size: 68 Copynumber: 4.8 Consensus size: 80
22963133 TGATTTAAAA
* *
22963143 AAAAACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACTTCTCACATTATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCACAATATGAGTT
22963208 GATTATTTTTTTTTG
66 GATTATTTTTTTTTG
* *
22963223 AAAAATAGAAATTAAGAAAGATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
1 AAAAACAGAAATT--GAAA-ATACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTCACAATAT
22963288 GAGTTG---A----TTTTTG
61 GAGTTGATTATTTTTTTTTG
* * ** *** * * *
22963301 AAAAACAGAAATTTAAAAGAAAT-A---TG-TTTGAGGCTCAACTCACCTGTCGCAATATAAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCACAATATGAGTT
***
22963361 G---A----TTTAAA
66 GATTATTTTTTTTTG
* * * * * *
22963369 AAAAACAGAAATTGGAACTACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCATTCTAAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCACAATATGAGTT
22963434 G---A--TTTTTTTG
66 GATTATTTTTTTTTG
* * * * * **
22963444 AAAAACAGAAATTAAAAAATACCCCGGCGTGTGACTCGAGGCTCAACTAACCTCTCGTAATATGA
1 AAAAACAGAAATT-GAAAATACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTCACAATATGA
22963509 GTTGA
63 GTTGA
22963514 ATTTTGAAAA
Statistics
Matches: 232, Mismatches: 43, Indels: 33
0.75 0.14 0.11
Matches are distributed among these distances:
68 51 0.22
69 3 0.01
72 2 0.01
73 30 0.13
74 1 0.00
75 19 0.08
76 12 0.05
78 51 0.22
80 12 0.05
82 5 0.02
83 10 0.04
85 36 0.16
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (80 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCACAATATGAGTT
GATTATTTTTTTTTG
Found at i:22965962 original size:16 final size:16
Alignment explanation
Indices: 22965937--22965967 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22965927 TCATCTTAAT
22965937 TTTTTCTTTTTTTTTG
1 TTTTTCTTTTTTTTTG
*
22965953 TTTTTGTTTTTTTTT
1 TTTTTCTTTTTTTTT
22965968 TGCGTTTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.03, G:0.06, T:0.90
Consensus pattern (16 bp):
TTTTTCTTTTTTTTTG
Found at i:22970008 original size:14 final size:14
Alignment explanation
Indices: 22969974--22970009 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
22969964 AACCATTTGA
22969974 TTATATAACAAGTC
1 TTATATAACAAGTC
22969988 -TATTATAACAAGTC
1 TTA-TATAACAAGTC
22970002 TTATATAA
1 TTATATAA
22970010 TCCTAAACCA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 2 0.10
14 16 0.80
15 2 0.10
ACGTcount: A:0.44, C:0.11, G:0.06, T:0.39
Consensus pattern (14 bp):
TTATATAACAAGTC
Found at i:22970748 original size:40 final size:40
Alignment explanation
Indices: 22970674--22970750 Score: 95
Period size: 40 Copynumber: 1.9 Consensus size: 40
22970664 AATTTCAGAA
* *
22970674 CACCGACATTAAGCCTGCTAGACATTAAGTCTGAATAATT
1 CACCGACATTAAGCCTGCTAGACATGAAGCCTGAATAATT
*
22970714 CACCGGCATTAAGCCTGCTAGGTACA-GAA-CCTGAATA
1 CACCGACATTAAGCCTGCTA-G-ACATGAAGCCTGAATA
22970751 TCATGAATAC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 26 0.81
41 3 0.09
42 3 0.09
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (40 bp):
CACCGACATTAAGCCTGCTAGACATGAAGCCTGAATAATT
Found at i:22975909 original size:17 final size:17
Alignment explanation
Indices: 22975866--22975909 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
22975856 TGCTGTTTTT
22975866 TTTTCTTTTTCTACTTTG
1 TTTT-TTTTTCTACTTTG
* *
22975884 TGTTTTTTTCTGCTTTG
1 TTTTTTTTTCTACTTTG
22975901 TTTTTTTTT
1 TTTTTTTTT
22975910 GGGCCAGCCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 20 0.87
18 3 0.13
ACGTcount: A:0.02, C:0.11, G:0.09, T:0.77
Consensus pattern (17 bp):
TTTTTTTTTCTACTTTG
Found at i:22976022 original size:13 final size:12
Alignment explanation
Indices: 22976004--22976051 Score: 60
Period size: 13 Copynumber: 3.8 Consensus size: 12
22975994 ATATAATTTA
22976004 TTTTTTCTTTTTCT
1 TTTTTTC-TTTT-T
22976018 TTTTTTCTTTTT
1 TTTTTTCTTTTT
22976030 TTTCTTTCTTTTT
1 TTT-TTTCTTTTT
*
22976043 TTTCTTCTT
1 TTTTTTCTT
22976052 CTTCTTCCTT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
12 9 0.28
13 16 0.50
14 7 0.22
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTTTCTTTTT
Found at i:22976023 original size:14 final size:13
Alignment explanation
Indices: 22976004--22976045 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
22975994 ATATAATTTA
22976004 TTTTTTCTTTTTCT
1 TTTTTTCTTTTT-T
22976018 TTTTTTCTTTTTT
1 TTTTTTCTTTTTT
*
22976031 TTCTTTCTTTTTT
1 TTTTTTCTTTTTT
22976044 TT
1 TT
22976046 CTTCTTCTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
13 15 0.56
14 12 0.44
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTCTTTTTT
Found at i:22976028 original size:21 final size:21
Alignment explanation
Indices: 22976004--22976044 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
22975994 ATATAATTTA
22976004 TTTTTTCTT-TTTCTTTTTTTC
1 TTTTTT-TTCTTTCTTTTTTTC
22976025 TTTTTTTTCTTTCTTTTTTT
1 TTTTTTTTCTTTCTTTTTTT
22976045 TCTTCTTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (21 bp):
TTTTTTTTCTTTCTTTTTTTC
Found at i:22976045 original size:22 final size:23
Alignment explanation
Indices: 22976004--22976057 Score: 74
Period size: 22 Copynumber: 2.4 Consensus size: 23
22975994 ATATAATTTA
*
22976004 TTTTTTCTTTTTCTTTTTTTCTT
1 TTTTTTCTTTCTCTTTTTTTCTT
22976027 TTTTTTCTTTCT-TTTTTTTCTT
1 TTTTTTCTTTCTCTTTTTTTCTT
* *
22976049 CTTCTTCTT
1 TTTTTTCTT
22976058 CCTTCTTCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 17 0.61
23 11 0.39
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (23 bp):
TTTTTTCTTTCTCTTTTTTTCTT
Found at i:22976050 original size:3 final size:3
Alignment explanation
Indices: 22976008--22976072 Score: 51
Period size: 3 Copynumber: 21.3 Consensus size: 3
22975998 AATTTATTTT
* * * * * *
22976008 TTC TTT TTC TT- TTT TTC TTT TTT TTC TTTC TTT TTT TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC -TTC TTC TTC TTC TTC TTC
22976053 TTC TTCC TTC TTC TTC TTC T
1 TTC TT-C TTC TTC TTC TTC T
22976073 AGCCGCACTA
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
2 2 0.04
3 44 0.85
4 6 0.12
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (3 bp):
TTC
Found at i:22976056 original size:9 final size:9
Alignment explanation
Indices: 22976004--22976072 Score: 61
Period size: 9 Copynumber: 7.7 Consensus size: 9
22975994 ATATAATTTA
22976004 TTTT-TTCT
1 TTTTCTTCT
22976012 TTTTCTT-T
1 TTTTCTTCT
*
22976020 TTTTCTTTT
1 TTTTCTTCT
22976029 TTTTCTTTCT
1 TTTTC-TTCT
*
22976039 TTTTTTTCT
1 TTTTCTTCT
*
22976048 TCTTCTTCT
1 TTTTCTTCT
*
22976057 TCCTTCTTCT
1 T-TTTCTTCT
*
22976067 TCTTCT
1 TTTTCT
22976073 AGCCGCACTA
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
8 12 0.23
9 25 0.47
10 16 0.30
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTTCTTCT
Found at i:22976062 original size:13 final size:13
Alignment explanation
Indices: 22976046--22976071 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
22976036 TCTTTTTTTT
22976046 CTTCTTCTTCTTC
1 CTTCTTCTTCTTC
22976059 CTTCTTCTTCTTC
1 CTTCTTCTTCTTC
22976072 TAGCCGCACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (13 bp):
CTTCTTCTTCTTC
Found at i:22976156 original size:13 final size:13
Alignment explanation
Indices: 22976138--22976176 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 13
22976128 ACCGGTACTC
22976138 CCTCTTTTCTCCT
1 CCTCTTTTCTCCT
22976151 CCTCTTTTTCTTTCCT
1 CCTC-TTTTC--TCCT
22976167 CCTCTTTTCT
1 CCTCTTTTCT
22976177 TTTCTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
13 5 0.22
14 5 0.22
15 5 0.22
16 8 0.35
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (13 bp):
CCTCTTTTCTCCT
Found at i:22976168 original size:16 final size:15
Alignment explanation
Indices: 22976138--22976178 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
22976128 ACCGGTACTC
22976138 CCTCTTTTC--TCCT
1 CCTCTTTTCTTTCCT
22976151 CCTCTTTTTCTTTCCT
1 CCTC-TTTTCTTTCCT
22976167 CCTCTTTTCTTT
1 CCTCTTTTCTTT
22976179 TCTTTTTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 4 0.16
14 5 0.20
15 8 0.32
16 8 0.32
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (15 bp):
CCTCTTTTCTTTCCT
Found at i:22976467 original size:29 final size:29
Alignment explanation
Indices: 22976435--22976593 Score: 162
Period size: 29 Copynumber: 5.4 Consensus size: 29
22976425 TTCTAGGTTG
*
22976435 AAATGTAATTTTGAAAAAAATT-AGGGTCA
1 AAATGTAATTTT-AAAAAAGTTAAGGGTCA
*
22976464 AAATATAATTTTAAAAAAGTTCAAGGGTCA
1 AAATGTAATTTTAAAAAAGTT-AAGGGTCA
* *
22976494 AAATGCAATTTCAAAAAAGTTTAAGGGTCA
1 AAATGTAATTTTAAAAAAG-TTAAGGGTCA
* *
22976524 CAATGTAATTTT-AAAAAGTTTAGGGGTCA
1 AAATGTAATTTTAAAAAAG-TTAAGGGTCA
* * *
22976553 AAGTGAAATTTT-AAAAAGTTGAGGGGTCA
1 AAATGTAATTTTAAAAAAGTT-AAGGGTCA
*
22976582 AAATATAATTTT
1 AAATGTAATTTT
22976594 TTTAAAACAG
Statistics
Matches: 111, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
28 10 0.09
29 59 0.53
30 40 0.36
31 2 0.02
ACGTcount: A:0.45, C:0.06, G:0.18, T:0.31
Consensus pattern (29 bp):
AAATGTAATTTTAAAAAAGTTAAGGGTCA
Found at i:22979680 original size:83 final size:83
Alignment explanation
Indices: 22979504--22980099 Score: 332
Period size: 83 Copynumber: 7.3 Consensus size: 83
22979494 CCCTTGGATT
* * * *
22979504 TGTTAAACGGCAGG-ATTAAATCCTGAAACAAAATTATTTAATTAAATCTT-GTTTGGAAACAAA
1 TGTTAAACGGCGGGAATT-AATCCCGAAACAAAATTATTTAATTAAGTCTTCATTTGGAAACAAA
22979567 ATC-A-A---AATAAAATC
65 ATCAAGATCGAATAAAATC
* *
22979581 TGTTAAACGGTGGGAATTAATCCCGAAACAAAATTATTTGATTAAGTCTTCATTTGGAAACAAAA
1 TGTTAAACGGCGGGAATTAATCCCGAAACAAAATTATTTAATTAAGTCTTCATTTGGAAACAAAA
22979646 TCAAGATCGAATAAAGA-C
66 TCAAGATCGAATAAA-ATC
* * * * * * *
22979664 TGTTAAACTGCGGGAA-TATATCTCGAAACAGATTTATATGATTAAGTCTTCGTTTGGAAACAAA
1 TGTTAAACGGCGGGAATTA-ATCCCGAAACAAAATTATTTAATTAAGTCTTCATTTGGAAACAAA
*
22979728 ATCAAGATCGAATATAGAT-
65 ATCAAGATCGAATA-AAATC
* ** * * * * * *
22979747 TGTTAAATGGTAGGAATAAATCCTGAAA-AAGATTATTCAATTTAATTC-TAATTTGGAAACAAA
1 TGTTAAACGGCGGGAATTAATCCCGAAACAAAATTATTTAA-TTAAGTCTTCATTTGGAAACAAA
* *
22979810 ATTAAAATCGAATAAAATC
65 ATCAAGATCGAATAAAATC
** * * * ** * *
22979829 TGTTAAACAACGGGAATAAATCTCAAAACATATTTTATTTAATTTTAA-T-TTCTGGTTTGGTAA
1 TGTTAAACGGCGGGAATTAATCCCGAAACA-AAATTATTTAA--TTAAGTCTTC--ATTTGGAAA
* * *
22979892 CAAAATCAAAAATAGAATAAAATA
61 CAAAATC-AAGATCGAATAAAATC
* * * * **
22979916 TGTTGAATGGTGGGAATAAATCCCGAAACAGATTTTATTTAATTTTAA-TGC-TCATTTGGAAAC
1 TGTTAAACGGCGGGAATTAATCCCGAAACA-AAATTATTTAA--TTAAGT-CTTCATTTGGAAAC
22979979 AAAAT--A-A---AAT---A--
62 AAAATCAAGATCGAATAAAATC
* * * ** *
22979990 TGTTGAACGGCGGGAATAAATCCCGAAACCGATTTTATTTAATTGTAA-TAC-TCGTTTGGAAAC
1 TGTTAAACGGCGGGAATTAATCCCGAAA-CAAAATTATTTAA-T-TAAGT-CTTCATTTGGAAAC
* *
22980053 AAAATCAAAAATGGAATAAAATC
62 AAAATC-AAGATCGAATAAAATC
* *
22980076 TGTTGAACGGCGGGAATAAATCCC
1 TGTTAAACGGCGGGAATTAATCCC
22980100 AAAATAAATT
Statistics
Matches: 417, Mismatches: 65, Indels: 65
0.76 0.12 0.12
Matches are distributed among these distances:
73 2 0.00
74 58 0.14
75 1 0.00
76 1 0.00
77 42 0.10
78 19 0.05
79 4 0.01
80 1 0.00
81 6 0.01
82 54 0.13
83 103 0.25
84 14 0.03
85 5 0.01
86 50 0.12
87 55 0.13
88 2 0.00
ACGTcount: A:0.43, C:0.12, G:0.15, T:0.31
Consensus pattern (83 bp):
TGTTAAACGGCGGGAATTAATCCCGAAACAAAATTATTTAATTAAGTCTTCATTTGGAAACAAAA
TCAAGATCGAATAAAATC
Found at i:22979994 original size:74 final size:74
Alignment explanation
Indices: 22979907--22980062 Score: 249
Period size: 74 Copynumber: 2.1 Consensus size: 74
22979897 TCAAAAATAG
* * * *
22979907 AATAAAATATGTTGAATGGTGGGAATAAATCCCGAAACAGATTTTATTTAATTTTAATGCTCATT
1 AATAAAATATGTTGAACGGCGGGAATAAATCCCGAAACAGATTTTATTTAATTGTAATACTCATT
22979972 TGGAAACAA
66 TGGAAACAA
* *
22979981 AATAAAATATGTTGAACGGCGGGAATAAATCCCGAAACCGATTTTATTTAATTGTAATACTCGTT
1 AATAAAATATGTTGAACGGCGGGAATAAATCCCGAAACAGATTTTATTTAATTGTAATACTCATT
22980046 TGGAAACAA
66 TGGAAACAA
22980055 AATCAAAA
1 AAT-AAAA
22980063 ATGGAATAAA
Statistics
Matches: 75, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
74 71 0.95
75 4 0.05
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.31
Consensus pattern (74 bp):
AATAAAATATGTTGAACGGCGGGAATAAATCCCGAAACAGATTTTATTTAATTGTAATACTCATT
TGGAAACAA
Found at i:22980093 original size:160 final size:161
Alignment explanation
Indices: 22979820--22980121 Score: 417
Period size: 160 Copynumber: 1.9 Consensus size: 161
22979810 ATTAAAATCG
* * * * * *
22979820 AATAAAATCTGTTAAACAACGGGAATAAATCTCAAAACATATTTTATTTAATTTTAATTTCTGGT
1 AATAAAATATGTTAAACAACGGGAATAAATCCCAAAACAGATTTTATTTAATTGTAATTACTCGT
* * * * *
22979885 TTGGTAACAAAATCAAAAATAGAATAAAATATGTTGAATGGTGGGAATAAATCCCGAAACAGATT
66 TTGGAAACAAAATCAAAAATAGAATAAAATATGTTGAACGGCGGGAATAAATCCCAAAACAAATT
*
22979950 TTATTTAATTTTAATGCTCATTTGGAAACAA
131 TTATTCAATTTTAATGCTCATTTGGAAACAA
* ** * *
22979981 AATAAAATATGTTGAACGGCGGGAATAAATCCCGAAACCGATTTTATTTAATTGTAA-TACTCGT
1 AATAAAATATGTTAAACAACGGGAATAAATCCCAAAACAGATTTTATTTAATTGTAATTACTCGT
* * *
22980045 TTGGAAACAAAATCAAAAATGGAATAAAATCTGTTGAACGGCGGGAATAAATCCCAAAATAAATT
66 TTGGAAACAAAATCAAAAATAGAATAAAATATGTTGAACGGCGGGAATAAATCCCAAAACAAATT
22980110 TTATTCAATTTT
131 TTATTCAATTTT
22980122 TATTTTGATT
Statistics
Matches: 121, Mismatches: 20, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
160 73 0.60
161 48 0.40
ACGTcount: A:0.42, C:0.11, G:0.14, T:0.32
Consensus pattern (161 bp):
AATAAAATATGTTAAACAACGGGAATAAATCCCAAAACAGATTTTATTTAATTGTAATTACTCGT
TTGGAAACAAAATCAAAAATAGAATAAAATATGTTGAACGGCGGGAATAAATCCCAAAACAAATT
TTATTCAATTTTAATGCTCATTTGGAAACAA
Found at i:22980274 original size:22 final size:23
Alignment explanation
Indices: 22980248--22980291 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
22980238 GTTAGCGATA
22980248 AAATATATAAATAT-AAATAAAC
1 AAATATATAAATATAAAATAAAC
* *
22980270 AAATATTTATATATAAAATAAA
1 AAATATATAAATATAAAATAAA
22980292 ATAAATTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (23 bp):
AAATATATAAATATAAAATAAAC
Found at i:22980293 original size:28 final size:31
Alignment explanation
Indices: 22980250--22980320 Score: 87
Period size: 30 Copynumber: 2.4 Consensus size: 31
22980240 TAGCGATAAA
22980250 ATATAT-AAATATAAATAAA-CAAAT-ATTT
1 ATATATAAAATATAAATAAATCAAATAATTT
**
22980278 ATATATAAAATA-AAATAAATTGAATAATTT
1 ATATATAAAATATAAATAAATCAAATAATTT
*
22980308 ATATTTAAAATAT
1 ATATATAAAATAT
22980321 CATATACGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
28 13 0.36
29 8 0.22
30 15 0.42
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (31 bp):
ATATATAAAATATAAATAAATCAAATAATTT
Found at i:22980744 original size:20 final size:20
Alignment explanation
Indices: 22980721--22980761 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
22980711 TTAAATCAAT
*
22980721 TTGATTAAAATCAAATTAAA
1 TTGATTAAAATCAAATAAAA
**
22980741 TTGATTGGAATCAAATAAAA
1 TTGATTAAAATCAAATAAAA
22980761 T
1 T
22980762 CAGGATATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.51, C:0.05, G:0.10, T:0.34
Consensus pattern (20 bp):
TTGATTAAAATCAAATAAAA
Found at i:22982377 original size:16 final size:17
Alignment explanation
Indices: 22982356--22982392 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
22982346 GACTTTTTTT
22982356 TTATAAAAGTTATA-TA
1 TTATAAAAGTTATATTA
*
22982372 TTATAAAATTTATATTA
1 TTATAAAAGTTATATTA
22982389 TTAT
1 TTAT
22982393 TTATTTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (17 bp):
TTATAAAAGTTATATTA
Found at i:22984040 original size:23 final size:27
Alignment explanation
Indices: 22983985--22984043 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 27
22983975 GAGCCATGAT
22983985 CGGTAAGCT-TATTCCGAGCTGAAGAA
1 CGGTAAGCTCTATTCCGAGCTGAAGAA
*
22984011 CGATAAGCTCTA-T-CGAGCTG-A-AA
1 CGGTAAGCTCTATTCCGAGCTGAAGAA
22984034 CGGTAAGCTC
1 CGGTAAGCTC
22984044 ATACGAGATG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
23 11 0.37
24 1 0.03
25 7 0.23
26 9 0.30
27 2 0.07
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (27 bp):
CGGTAAGCTCTATTCCGAGCTGAAGAA
Found at i:22984050 original size:23 final size:25
Alignment explanation
Indices: 22983985--22984050 Score: 66
Period size: 23 Copynumber: 2.7 Consensus size: 25
22983975 GAGCCATGAT
* *
22983985 CGGTAAGCTTATTCCGAGCTGAAGAA
1 CGGTAAGCTCA-TACGAGCTGAAGAA
*
22984011 CGATAAGCTC-TATCGAGCTG-A-AA
1 CGGTAAGCTCATA-CGAGCTGAAGAA
22984034 CGGTAAGCTCATACGAG
1 CGGTAAGCTCATACGAG
22984051 ATGTGGTGAG
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
23 15 0.44
24 4 0.12
25 7 0.21
26 8 0.24
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (25 bp):
CGGTAAGCTCATACGAGCTGAAGAA
Found at i:22985810 original size:31 final size:28
Alignment explanation
Indices: 22985775--22985843 Score: 84
Period size: 31 Copynumber: 2.4 Consensus size: 28
22985765 ACTATCCAAA
* *
22985775 TAGTCACTTTTGTTTGACTCAGGTTACATTT
1 TAGTCACTTATGTTTGA--AAGGTTACA-TT
*
22985806 TAGTCACTTATGTTTGAAATGTTACATT
1 TAGTCACTTATGTTTGAAAGGTTACATT
22985834 TAGTCACTTA
1 TAGTCACTTA
22985844 CGTTATCGCG
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
28 12 0.34
29 7 0.20
31 16 0.46
ACGTcount: A:0.25, C:0.14, G:0.14, T:0.46
Consensus pattern (28 bp):
TAGTCACTTATGTTTGAAAGGTTACATT
Found at i:22987055 original size:14 final size:14
Alignment explanation
Indices: 22987019--22987053 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
22987009 TCATCATTTG
*
22987019 CCTATAACCAAAAC
1 CCTAAAACCAAAAC
22987033 CCTAAAACCAAAAC
1 CCTAAAACCAAAAC
22987047 CCATAAA
1 CC-TAAA
22987054 CCCATACCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 15 0.79
15 4 0.21
ACGTcount: A:0.54, C:0.34, G:0.00, T:0.11
Consensus pattern (14 bp):
CCTAAAACCAAAAC
Found at i:22990310 original size:18 final size:19
Alignment explanation
Indices: 22990273--22990310 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
22990263 TGAATTTTTA
*
22990273 ATGAGTATTTATATAATTG
1 ATGAATATTTATATAATTG
*
22990292 ATGAATATTT-TATATTTG
1 ATGAATATTTATATAATTG
22990310 A
1 A
22990311 ACTTTATATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (19 bp):
ATGAATATTTATATAATTG
Found at i:23003198 original size:43 final size:43
Alignment explanation
Indices: 23003121--23003276 Score: 136
Period size: 43 Copynumber: 3.6 Consensus size: 43
23003111 AATGCCAACG
* * * *
23003121 TCCCAGACGTGGTCTTACATGTAATCACAGATCGACACT-ACTA
1 TCCCAGACGTGGTCTTACATGAAAACATAAATCGACACTAAC-A
** ** *
23003164 TCCCAGACAAGGTCTTACATGAAAACATAAATCGATGCTAACG
1 TCCCAGACGTGGTCTTACATGAAAACATAAATCGACACTAACA
* * ** **
23003207 TCCTAGACGTGGTCTTACACGAAAACATAAATCGA-TGTCAATG
1 TCCCAGACGTGGTCTTACATGAAAACATAAATCGACACT-AACA
*
23003250 TCCCATACGTGGTCTTACATGAAAACA
1 TCCCAGACGTGGTCTTACATGAAAACA
23003277 CATATCGGAA
Statistics
Matches: 92, Mismatches: 19, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
42 1 0.01
43 89 0.97
44 2 0.02
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (43 bp):
TCCCAGACGTGGTCTTACATGAAAACATAAATCGACACTAACA
Found at i:23003298 original size:17 final size:17
Alignment explanation
Indices: 23003276--23003309 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
23003266 ACATGAAAAC
23003276 ACATATCGGAAATCCTA
1 ACATATCGGAAATCCTA
23003293 ACATATCGGAAATCCTA
1 ACATATCGGAAATCCTA
23003310 TGTCATGACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.24, G:0.12, T:0.24
Consensus pattern (17 bp):
ACATATCGGAAATCCTA
Found at i:23009062 original size:11 final size:11
Alignment explanation
Indices: 23009047--23009084 Score: 67
Period size: 11 Copynumber: 3.4 Consensus size: 11
23009037 AAATTTAAAA
23009047 AAAAAGTATTTT
1 AAAAA-TATTTT
23009059 AAAAATATTTT
1 AAAAATATTTT
23009070 AAAAATATTTT
1 AAAAATATTTT
23009081 AAAA
1 AAAA
23009085 TTTAAAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 21 0.81
12 5 0.19
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:23009271 original size:18 final size:18
Alignment explanation
Indices: 23009248--23009288 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
23009238 ATTTTAGGCG
*
23009248 GGCCGTTGGGCCGGGCCA
1 GGCCGTCGGGCCGGGCCA
*
23009266 GGCCGTCGGGCCGGGCCG
1 GGCCGTCGGGCCGGGCCA
23009284 GGCCG
1 GGCCG
23009289 CCCGGCCCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.02, C:0.37, G:0.54, T:0.07
Consensus pattern (18 bp):
GGCCGTCGGGCCGGGCCA
Found at i:23009295 original size:18 final size:18
Alignment explanation
Indices: 23009256--23009295 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
23009246 CGGGCCGTTG
* *
23009256 GGCCGGGCCAGGCCGTCG
1 GGCCGGGCCAGGCCGCCC
*
23009274 GGCCGGGCCGGGCCGCCC
1 GGCCGGGCCAGGCCGCCC
23009292 GGCC
1 GGCC
23009296 CATGAACACC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.03, C:0.45, G:0.50, T:0.03
Consensus pattern (18 bp):
GGCCGGGCCAGGCCGCCC
Found at i:23010971 original size:108 final size:108
Alignment explanation
Indices: 23010782--23010979 Score: 308
Period size: 108 Copynumber: 1.8 Consensus size: 108
23010772 GACAGGTGCA
* * *
23010782 ACTGTTTTGGAGAAGGATAATGAAAAAAATTCTGCTGAAACTGAACCGGCAGATAATGTACTTGC
1 ACTGTTTTGGAGAAGGATAATGAAAAAAAATCTGCTGAAACTGAACCAGCAGATAATGTACATGC
*
23010847 AGAACCTGATAGGAGCCCCAAGATATCTAATTTGAAAGATGCG
66 AGAACCTGATAAGAGCCCCAAGATATCTAATTTGAAAGATGCG
* * *
23010890 ACTGTTCTT-GAGAAGTATAATGAAAAAAAATCTGCTGAAACTGAACCAGCTGATGATGTACATG
1 ACTGTT-TTGGAGAAGGATAATGAAAAAAAATCTGCTGAAACTGAACCAGCAGATAATGTACATG
*
23010954 CAGAACCTGATAAGAGCCTCAAGATA
65 CAGAACCTGATAAGAGCCCCAAGATA
23010980 CACCCTCGTG
Statistics
Matches: 81, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
108 79 0.98
109 2 0.02
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (108 bp):
ACTGTTTTGGAGAAGGATAATGAAAAAAAATCTGCTGAAACTGAACCAGCAGATAATGTACATGC
AGAACCTGATAAGAGCCCCAAGATATCTAATTTGAAAGATGCG
Found at i:23020561 original size:31 final size:30
Alignment explanation
Indices: 23020503--23020722 Score: 87
Period size: 30 Copynumber: 7.4 Consensus size: 30
23020493 GATTATCAGC
* * **
23020503 TAATGAAAAGGGATAGCCTCGGTTATCAAAA
1 TAATGAAAAGGGATAACATCGACTATC-AAA
23020534 TAATGAAAAGGGATAACATCGACTATCAAA
1 TAATGAAAAGGGATAACATCGACTATCAAA
* * ***
23020564 TTATGAAATGGGATGGTGAT-GA-TCATCAAA
1 TAATGAAAAGGGAT-AACATCGACT-ATCAAA
*** * *
23020594 -AATGAAAAGGGATGGTGA-CGACCATCGAA
1 TAATGAAAAGGGAT-AACATCGACTATCAAA
* * * *
23020623 TAACGAAAAGGGATAGCTTC-AGCTATCAAT
1 TAATGAAAAGGGATAACATCGA-CTATCAAA
*** *
23020653 TAATGAAAAGGGATGGTGA-CGACCATC-AA
1 TAATGAAAAGGGAT-AACATCGACTATCAAA
*** *
23020682 TAATGAAAAGGGATGGTGA-CGACCATCAAA
1 TAATGAAAAGGGAT-AACATCGACTATCAAA
23020712 TAATGAAAAGG
1 TAATGAAAAGG
23020723 AATAGATTTG
Statistics
Matches: 151, Mismatches: 28, Indels: 21
0.75 0.14 0.10
Matches are distributed among these distances:
29 53 0.35
30 72 0.48
31 26 0.17
ACGTcount: A:0.43, C:0.12, G:0.25, T:0.20
Consensus pattern (30 bp):
TAATGAAAAGGGATAACATCGACTATCAAA
Found at i:23020592 original size:30 final size:30
Alignment explanation
Indices: 23020531--23020722 Score: 196
Period size: 30 Copynumber: 6.5 Consensus size: 30
23020521 TCGGTTATCA
*** *
23020531 AAATAATGAAAAGGGAT-AACATCGACTATC
1 AAATAATGAAAAGGGATGGTGA-CGACCATC
* * * *
23020561 AAATTATGAAATGGGATGGTGATGATCATC
1 AAATAATGAAAAGGGATGGTGACGACCATC
23020591 AAA-AATGAAAAGGGATGGTGACGACCATC
1 AAATAATGAAAAGGGATGGTGACGACCATC
* * * * *
23020620 GAATAACGAAAAGGGATAGCT-TC-AGCTATC
1 AAATAATGAAAAGGGAT-GGTGACGA-CCATC
*
23020650 AATTAATGAAAAGGGATGGTGACGACCATC
1 AAATAATGAAAAGGGATGGTGACGACCATC
23020680 -AATAATGAAAAGGGATGGTGACGACCATC
1 AAATAATGAAAAGGGATGGTGACGACCATC
23020709 AAATAATGAAAAGG
1 AAATAATGAAAAGG
23020723 AATAGATTTG
Statistics
Matches: 131, Mismatches: 24, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
29 55 0.42
30 72 0.55
31 4 0.03
ACGTcount: A:0.44, C:0.12, G:0.24, T:0.20
Consensus pattern (30 bp):
AAATAATGAAAAGGGATGGTGACGACCATC
Found at i:23020606 original size:29 final size:29
Alignment explanation
Indices: 23020566--23020722 Score: 183
Period size: 29 Copynumber: 5.3 Consensus size: 29
23020556 CTATCAAATT
* * * *
23020566 ATGAAATGGGATGGTGATGATCATCAAAA
1 ATGAAAAGGGATGGTGACGACCATCAATA
23020595 ATGAAAAGGGATGGTGACGACCATCGAATA
1 ATGAAAAGGGATGGTGACGACCATC-AATA
* * * *
23020625 ACGAAAAGGGATAGCT-TC-AGCTATCAATTA
1 ATGAAAAGGGAT-GGTGACGA-CCATCAA-TA
23020655 ATGAAAAGGGATGGTGACGACCATCAATA
1 ATGAAAAGGGATGGTGACGACCATCAATA
23020684 ATGAAAAGGGATGGTGACGACCATCAAATA
1 ATGAAAAGGGATGGTGACGACCATC-AATA
23020714 ATGAAAAGG
1 ATGAAAAGG
23020723 AATAGATTTG
Statistics
Matches: 109, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
29 54 0.50
30 52 0.48
31 3 0.03
ACGTcount: A:0.42, C:0.12, G:0.27, T:0.19
Consensus pattern (29 bp):
ATGAAAAGGGATGGTGACGACCATCAATA
Found at i:23020634 original size:89 final size:89
Alignment explanation
Indices: 23020531--23020722 Score: 280
Period size: 89 Copynumber: 2.2 Consensus size: 89
23020521 TCGGTTATCA
* * *
23020531 AAATAATGAAAAGGGATAACATC-GACTATCAAATT-ATGAAATGGGATGGTGATGATCATCAAA
1 AAATAATGAAAAGGGATAACATCAG-CTATC-AATTAATGAAAAGGGATGGTGACGACCATCAAA
23020594 AATGAAAAGGGATGGTGACGACCATC
64 AATGAAAAGGGATGGTGACGACCATC
* * * * *
23020620 GAATAACGAAAAGGGATAGCTTCAGCTATCAATTAATGAAAAGGGATGGTGACGACCATCAATAA
1 AAATAATGAAAAGGGATAACATCAGCTATCAATTAATGAAAAGGGATGGTGACGACCATCAAAAA
23020685 TGAAAAGGGATGGTGACGACCATC
66 TGAAAAGGGATGGTGACGACCATC
23020709 AAATAATGAAAAGG
1 AAATAATGAAAAGG
23020723 AATAGATTTG
Statistics
Matches: 91, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
88 4 0.04
89 86 0.95
90 1 0.01
ACGTcount: A:0.44, C:0.12, G:0.24, T:0.20
Consensus pattern (89 bp):
AAATAATGAAAAGGGATAACATCAGCTATCAATTAATGAAAAGGGATGGTGACGACCATCAAAAA
TGAAAAGGGATGGTGACGACCATC
Found at i:23022441 original size:11 final size:10
Alignment explanation
Indices: 23022384--23022442 Score: 52
Period size: 11 Copynumber: 5.8 Consensus size: 10
23022374 ATTCCAAAAA
23022384 TAATATTATTT
1 TAATATTA-TT
23022395 TAATA-TATT
1 TAATATTATT
23022404 TAATACTTATCT
1 TAATA-TTAT-T
*
23022416 TAAAATTATT
1 TAATATTATT
23022426 T--TATTACTT
1 TAATATTA-TT
23022435 TAATATTA
1 TAATATTA
23022443 AAGTGATTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
8 4 0.10
9 10 0.25
10 4 0.10
11 17 0.43
12 5 0.12
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (10 bp):
TAATATTATT
Found at i:23022504 original size:32 final size:32
Alignment explanation
Indices: 23022466--23022569 Score: 130
Period size: 32 Copynumber: 3.4 Consensus size: 32
23022456 AATATTTAAT
23022466 TTAATTTAATATTTATCTTGATAAATATTATA
1 TTAATTTAATATTTATCTTGATAAATATTATA
* *
23022498 TTAATTTAATA---ATATT--T-AATATTAAA
1 TTAATTTAATATTTATCTTGATAAATATTATA
*
23022524 TTTAATCTAATATTTATCTTGATAAATATTATA
1 -TTAATTTAATATTTATCTTGATAAATATTATA
23022557 TTAATTTAATATT
1 TTAATTTAATATT
23022570 AAAATGATTA
Statistics
Matches: 59, Mismatches: 6, Indels: 14
0.75 0.08 0.18
Matches are distributed among these distances:
26 8 0.14
27 11 0.19
29 4 0.07
30 4 0.07
32 24 0.41
33 8 0.14
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (32 bp):
TTAATTTAATATTTATCTTGATAAATATTATA
Found at i:23022526 original size:59 final size:59
Alignment explanation
Indices: 23022454--23022567 Score: 210
Period size: 59 Copynumber: 1.9 Consensus size: 59
23022444 AGTGATTATC
* *
23022454 TTAATATTTAATTTAATTTAATATTTATCTTGATAAATATTATATTAATTTAATAATAT
1 TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATAATAT
23022513 TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATA
1 TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATA
23022568 TTAAAATGAT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
59 53 1.00
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.53
Consensus pattern (59 bp):
TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATAATAT
Found at i:23026385 original size:22 final size:23
Alignment explanation
Indices: 23026351--23026394 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 23
23026341 CAACCAATCA
**
23026351 ATTTCAACATATTTTTAAGATAG
1 ATTTCAACATATTCATAAGATAG
*
23026374 ATTT-AACGTATTCATAAGATA
1 ATTTCAACATATTCATAAGATA
23026395 ACCTCATCAC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (23 bp):
ATTTCAACATATTCATAAGATAG
Found at i:23035214 original size:32 final size:32
Alignment explanation
Indices: 23035178--23035245 Score: 136
Period size: 32 Copynumber: 2.1 Consensus size: 32
23035168 TAGCATGGAG
23035178 ACACCGAATGAGAAGACTTGTTTGGAAATTCT
1 ACACCGAATGAGAAGACTTGTTTGGAAATTCT
23035210 ACACCGAATGAGAAGACTTGTTTGGAAATTCT
1 ACACCGAATGAGAAGACTTGTTTGGAAATTCT
23035242 ACAC
1 ACAC
23035246 TGCAATACAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (32 bp):
ACACCGAATGAGAAGACTTGTTTGGAAATTCT
Found at i:23037324 original size:15 final size:15
Alignment explanation
Indices: 23037304--23037357 Score: 74
Period size: 15 Copynumber: 3.7 Consensus size: 15
23037294 TTTAAAAAAG
23037304 TTAAAAAAATAAATA
1 TTAAAAAAATAAATA
*
23037319 TTAAAAAAATAAAAA
1 TTAAAAAAATAAATA
* *
23037334 AT-AAAAAATATATA
1 TTAAAAAAATAAATA
23037348 TTAAAAAAAT
1 TTAAAAAAAT
23037358 TCAGAAACGA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
14 11 0.33
15 22 0.67
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
TTAAAAAAATAAATA
Found at i:23037326 original size:14 final size:14
Alignment explanation
Indices: 23037307--23037355 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
23037297 AAAAAAGTTA
23037307 AAAAAATAAATATT
1 AAAAAATAAATATT
* *
23037321 AAAAAAATAAAAAAT
1 -AAAAAATAAATATT
*
23037336 AAAAAATATATATT
1 AAAAAATAAATATT
23037350 AAAAAA
1 AAAAAA
23037356 ATTCAGAAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 17 0.59
15 12 0.41
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (14 bp):
AAAAAATAAATATT
Found at i:23040704 original size:40 final size:41
Alignment explanation
Indices: 23040655--23040746 Score: 96
Period size: 41 Copynumber: 2.3 Consensus size: 41
23040645 AGTCAAGTAT
*
23040655 TAGTAGCGTTTATGAGAAAAACACCAC-AAAAGGTAAGCAA
1 TAGTGGCGTTTATGAGAAAAACACCACAAAAAGGTAAGCAA
* **** * * *
23040695 TAGTGGCGTTTTTGTTCCAAACGCCACAAAAAGTTGAGCAA
1 TAGTGGCGTTTATGAGAAAAACACCACAAAAAGGTAAGCAA
23040736 TAGTGGCGTTT
1 TAGTGGCGTTT
23040747 TTAGTACAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
40 20 0.48
41 22 0.52
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (41 bp):
TAGTGGCGTTTATGAGAAAAACACCACAAAAAGGTAAGCAA
Found at i:23040757 original size:41 final size:40
Alignment explanation
Indices: 23040673--23040760 Score: 115
Period size: 41 Copynumber: 2.2 Consensus size: 40
23040663 TTTATGAGAA
* *
23040673 AAACACCACAAAAGGTAAGCAATAGTGGCGTTTTTGTTCC
1 AAACGCCACAAAAGGTAAGCAATAGTGGCGTTTTTGTTAC
* *
23040713 AAACGCCACAAAAAGTTGAGCAATAGTGGCGTTTTTAG-TAC
1 AAACGCCAC-AAAAGGTAAGCAATAGTGGCGTTTTT-GTTAC
23040754 AAACGCC
1 AAACGCC
23040761 GCTAATATGT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
40 8 0.19
41 33 0.79
42 1 0.02
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.23
Consensus pattern (40 bp):
AAACGCCACAAAAGGTAAGCAATAGTGGCGTTTTTGTTAC
Found at i:23043068 original size:3 final size:3
Alignment explanation
Indices: 23043060--23043119 Score: 50
Period size: 3 Copynumber: 20.0 Consensus size: 3
23043050 AACTAATATA
* * * * * *
23043060 AAT AAT AAT ACT AAT AGT TAT AAT AAC ATT AAT AAT AAT AAC AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
23043108 AAT GAA- AAT AAT
1 AAT -AAT AAT AAT
23043120 TGAGTAATTA
Statistics
Matches: 43, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
2 2 0.05
3 39 0.91
4 2 0.05
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:23043097 original size:15 final size:15
Alignment explanation
Indices: 23043060--23043110 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
23043050 AACTAATATA
23043060 AATAATAAT-ACTAAT
1 AATAATAATAAC-AAT
* * *
23043075 AGTTATAATAACATT
1 AATAATAATAACAAT
23043090 AATAATAATAACAAT
1 AATAATAATAACAAT
23043105 AATAAT
1 AATAAT
23043111 GAAAATAATT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
15 27 0.93
16 2 0.07
ACGTcount: A:0.59, C:0.06, G:0.02, T:0.33
Consensus pattern (15 bp):
AATAATAATAACAAT
Found at i:23049082 original size:21 final size:21
Alignment explanation
Indices: 23049053--23049102 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
23049043 CTACAACTTA
* *
23049053 AAGCGGAGGCAACAATGAGGG
1 AAGCAGAGGCAACAACGAGGG
* *
23049074 AAGTAGAGGCAGCAACGAGGG
1 AAGCAGAGGCAACAACGAGGG
23049095 AAGCAGAG
1 AAGCAGAG
23049103 CAAAGCAGAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.40, C:0.14, G:0.42, T:0.04
Consensus pattern (21 bp):
AAGCAGAGGCAACAACGAGGG
Found at i:23049364 original size:11 final size:11
Alignment explanation
Indices: 23049348--23049380 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
23049338 ATTTTGGGAA
23049348 AAGTATCATTT
1 AAGTATCATTT
23049359 AAGTATCATTT
1 AAGTATCATTT
23049370 -AGTAT-ATTT
1 AAGTATCATTT
23049379 AA
1 AA
23049381 TTCGTCATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 4 0.19
10 6 0.29
11 11 0.52
ACGTcount: A:0.39, C:0.06, G:0.09, T:0.45
Consensus pattern (11 bp):
AAGTATCATTT
Found at i:23056351 original size:20 final size:20
Alignment explanation
Indices: 23056322--23056380 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
23056312 ATTAAATAAT
23056322 ATTTACTATTAAGATAATTA
1 ATTTACTATTAAGATAATTA
*
23056342 ATTTAATATTAA-ATTAA-TA
1 ATTTACTATTAAGA-TAATTA
**
23056361 AAATACTATTAAGATAATTA
1 ATTTACTATTAAGATAATTA
23056381 TTAAATTAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
19 15 0.47
20 17 0.53
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.42
Consensus pattern (20 bp):
ATTTACTATTAAGATAATTA
Found at i:23056370 original size:39 final size:38
Alignment explanation
Indices: 23056325--23056419 Score: 117
Period size: 37 Copynumber: 2.5 Consensus size: 38
23056315 AAATAATATT
23056325 TACTATTAAGATAATTAATTTAATATTAAA-TTAATA-AAA
1 TACTATTAAGATAATT-A-TTAA-ATTAAATTTAATATAAA
*
23056364 TACTATTAAGATAATTATTAAATTAAATTTAATATTAA
1 TACTATTAAGATAATTATTAAATTAAATTTAATATAAA
*
23056402 -ACTATTAAAATAA-TATTA
1 TACTATTAAGATAATTATTA
23056420 TTTTTGGAAT
Statistics
Matches: 52, Mismatches: 2, Indels: 7
0.85 0.03 0.11
Matches are distributed among these distances:
36 11 0.21
37 22 0.42
38 3 0.06
39 16 0.31
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (38 bp):
TACTATTAAGATAATTATTAAATTAAATTTAATATAAA
Found at i:23056725 original size:12 final size:12
Alignment explanation
Indices: 23056708--23056739 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
23056698 CTAGTTTTTG
23056708 GGTCTTGGTCTC
1 GGTCTTGGTCTC
23056720 GGTCTTGGTCTC
1 GGTCTTGGTCTC
*
23056732 GGTTTTGG
1 GGTCTTGG
23056740 GCTCCCGGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.19, G:0.38, T:0.44
Consensus pattern (12 bp):
GGTCTTGGTCTC
Found at i:23062613 original size:15 final size:16
Alignment explanation
Indices: 23062582--23062614 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
23062572 ATATCCTTTT
*
23062582 AAATTTCAAACACATA
1 AAATTTCAAACAAATA
23062598 AAATTTCAAA-AAATA
1 AAATTTCAAACAAATA
23062613 AA
1 AA
23062615 GGCAATATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (16 bp):
AAATTTCAAACAAATA
Found at i:23063975 original size:27 final size:24
Alignment explanation
Indices: 23063944--23063992 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 24
23063934 AAGGAAAAAT
23063944 AGATGGAGAAAAGAAGAAAAGAAATGA
1 AGATGGA-AAAAGAA-AAAA-AAATGA
*
23063971 AGATGTAAAAAGAAAAAAAAAT
1 AGATGGAAAAAGAAAAAAAAAT
23063993 AGGGTGATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 4 0.19
25 4 0.19
26 7 0.33
27 6 0.29
ACGTcount: A:0.67, C:0.00, G:0.22, T:0.10
Consensus pattern (24 bp):
AGATGGAAAAAGAAAAAAAAATGA
Found at i:23069859 original size:18 final size:17
Alignment explanation
Indices: 23069827--23069862 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
23069817 TTAGTCACTT
23069827 TAATATTAAATTTAATA
1 TAATATTAAATTTAATA
*
23069844 TAATATTTATATTTAATA
1 TAATA-TTAAATTTAATA
23069862 T
1 T
23069863 TAAATCTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TAATATTAAATTTAATA
Found at i:23069926 original size:12 final size:12
Alignment explanation
Indices: 23069901--23070013 Score: 55
Period size: 12 Copynumber: 9.8 Consensus size: 12
23069891 ATCAACAAGA
23069901 TAAATATTAAAT
1 TAAATATTAAAT
23069913 TAAAT-TTAATAT
1 TAAATATTAA-AT
* * *
23069925 TAAGATAATCACT
1 TAA-ATATTAAAT
*
23069938 TTAATATTAAAT
1 TAAATATTAAAT
23069950 T-AATA--AAA-
1 TAAATATTAAAT
*
23069958 T-ATTATTAAGAT
1 TAAATATTAA-AT
*
23069970 T-AGTATTAAAT
1 TAAATATTAAAT
23069981 TAAAT-TTAATAT
1 TAAATATTAA-AT
*
23069993 TAAACTATTAAAA
1 TAAA-TATTAAAT
23070006 TAAA-ATTA
1 TAAATATTA
23070014 GTTTTGAAAT
Statistics
Matches: 79, Mismatches: 11, Indels: 23
0.70 0.10 0.20
Matches are distributed among these distances:
8 4 0.05
9 3 0.04
10 2 0.03
11 20 0.25
12 33 0.42
13 11 0.14
14 6 0.08
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (12 bp):
TAAATATTAAAT
Found at i:23069953 original size:20 final size:18
Alignment explanation
Indices: 23069903--23069996 Score: 78
Period size: 17 Copynumber: 5.5 Consensus size: 18
23069893 CAACAAGATA
23069903 AATATTAAATTAA-ATTT
1 AATATTAAATTAATATTT
23069920 AATATTAAGA-TAATCACTTT
1 AATATTAA-ATTAAT-A-TTT
*
23069940 AATATTAAATTAATA--A
1 AATATTAAATTAATATTT
*
23069956 AATATT--ATTAAGA-TT
1 AATATTAAATTAATATTT
*
23069971 AGTATTAAATTAA-ATTT
1 AATATTAAATTAATATTT
23069988 AATATTAAA
1 AATATTAAA
23069997 CTATTAAAAT
Statistics
Matches: 63, Mismatches: 5, Indels: 18
0.73 0.06 0.21
Matches are distributed among these distances:
14 6 0.10
15 5 0.08
16 7 0.11
17 26 0.41
18 1 0.02
19 3 0.05
20 15 0.24
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (18 bp):
AATATTAAATTAATATTT
Found at i:23070169 original size:25 final size:25
Alignment explanation
Indices: 23070141--23070188 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
23070131 TGTTGTATCC
*
23070141 AGTTAGTGACGACCCGTCCAGTCAG
1 AGTTAGTGACGACCCGACCAGTCAG
* *
23070166 AGTTAGTGATGACCTGACCAGTC
1 AGTTAGTGACGACCCGACCAGTC
23070189 TGGTTTAGCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (25 bp):
AGTTAGTGACGACCCGACCAGTCAG
Found at i:23073545 original size:1 final size:1
Alignment explanation
Indices: 23073539--23073622 Score: 51
Period size: 1 Copynumber: 84.0 Consensus size: 1
23073529 GAATGATTGC
* * * * * * * * * *
23073539 AAAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
23073604 AATAAAAATAAAAATAAAA
1 AAAAAAAAAAAAAAAAAAA
23073623 CACACATATT
Statistics
Matches: 57, Mismatches: 26, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
1 57 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (1 bp):
A
Found at i:23073552 original size:6 final size:6
Alignment explanation
Indices: 23073541--23073622 Score: 164
Period size: 6 Copynumber: 13.7 Consensus size: 6
23073531 ATGATTGCAA
23073541 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
23073589 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA
23073623 CACACATATT
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 76 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:23082174 original size:22 final size:22
Alignment explanation
Indices: 23082114--23082171 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 22
23082104 AATATTCAAG
23082114 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
23082133 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
23082155 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
23082172 GATTTAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.39
22 8 0.24
23 12 0.36
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:23093801 original size:12 final size:11
Alignment explanation
Indices: 23093757--23093804 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 11
23093747 TTTAAATTTG
23093757 TTATAAATTTTT
1 TTAT-AATTTTT
*
23093769 TTATGAAGTTTGT
1 TTAT-AA-TTTTT
23093782 TTATAATTTTT
1 TTATAATTTTT
23093793 TTAATAATTTTT
1 TT-ATAATTTTT
23093805 AAAATTTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
11 6 0.19
12 17 0.55
13 8 0.26
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (11 bp):
TTATAATTTTT
Found at i:23094353 original size:20 final size:20
Alignment explanation
Indices: 23094328--23094367 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
23094318 AAATTTTTTT
23094328 ATCTTGTC-AAATCTTTGATA
1 ATCTTGTCAAAATC-TTGATA
23094348 ATCTTGTCAAAATCTTGATA
1 ATCTTGTCAAAATCTTGATA
23094368 CTAACTGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.42
Consensus pattern (20 bp):
ATCTTGTCAAAATCTTGATA
Found at i:23097013 original size:28 final size:28
Alignment explanation
Indices: 23096959--23097050 Score: 107
Period size: 28 Copynumber: 3.3 Consensus size: 28
23096949 CCTATACAGT
*
23096959 AACAGT-ACAGTGTGGGCCTTAGCCCAA
1 AACAGTAACAATGTGGGCCTTAGCCCAA
*
23096986 AAC-GATAACAATGTGGGCCTTAGTCCAA
1 AACAG-TAACAATGTGGGCCTTAGCCCAA
* * *
23097014 TACAGTAATAGTGTGGGCCTTAGCCCAA
1 AACAGTAACAATGTGGGCCTTAGCCCAA
*
23097042 TACAGTAAC
1 AACAGTAAC
23097051 CAGTACAGTG
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
26 1 0.02
27 4 0.07
28 49 0.89
29 1 0.02
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.22
Consensus pattern (28 bp):
AACAGTAACAATGTGGGCCTTAGCCCAA
Found at i:23097984 original size:12 final size:13
Alignment explanation
Indices: 23097960--23097989 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
23097950 GAATGAAGAG
23097960 GAGAAGAAGAGAA
1 GAGAAGAAGAGAA
23097973 GAGAAG-AGAGAA
1 GAGAAGAAGAGAA
23097985 GAGAA
1 GAGAA
23097990 AAGTGAAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.65
13 6 0.35
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (13 bp):
GAGAAGAAGAGAA
Found at i:23105657 original size:41 final size:41
Alignment explanation
Indices: 23105557--23105671 Score: 126
Period size: 41 Copynumber: 2.8 Consensus size: 41
23105547 ACCAGCACAA
* *
23105557 AGCCTGATATAAATCACTGGCACGAAGCCTGCTAGGAACAG
1 AGCCTGATATAAATCACCGGCAAGAAGCCTGCTAGGAACAG
* * *
23105598 AGCCTGATACAACA-CACCGGCATAG-AGCCTGCTAGGTAGAG
1 AGCCTGATATAA-ATCACCGGCA-AGAAGCCTGCTAGGAACAG
* * *
23105639 AGCCTGGTATAAATCACCGGCACGAAGTCTGCT
1 AGCCTGATATAAATCACCGGCAAGAAGCCTGCT
23105672 GGACTCAAAG
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
40 2 0.03
41 57 0.93
42 2 0.03
ACGTcount: A:0.31, C:0.26, G:0.25, T:0.17
Consensus pattern (41 bp):
AGCCTGATATAAATCACCGGCAAGAAGCCTGCTAGGAACAG
Found at i:23106923 original size:23 final size:23
Alignment explanation
Indices: 23106875--23106924 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
23106865 CTAAATTATT
* * *
23106875 TATTCAAATAACATAAATTACCA
1 TATTAAAATAAAATAAATTACAA
23106898 TATTAAAATAAAATATAA-TACAA
1 TATTAAAATAAAATA-AATTACAA
23106921 TATT
1 TATT
23106925 TGACTCGAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 21 0.91
24 2 0.09
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.34
Consensus pattern (23 bp):
TATTAAAATAAAATAAATTACAA
Found at i:23107411 original size:66 final size:62
Alignment explanation
Indices: 23107336--23107460 Score: 178
Period size: 66 Copynumber: 2.0 Consensus size: 62
23107326 TTTATATATA
* * *
23107336 GTATATATATTGATGGGTTTTGGTGTCATATATATAATATACATATGCATGGTTCTATTGTATGC
1 GTATATATATTAATGGATTTTGGTGT--TATATATAATA-A-ATATGCATGGTTATATTGTATGC
23107401 G
62 G
*
23107402 GTATATATATTAATGGATTTTGGTGTTATATATAATAAATATGCATGGTTATGTTGTAT
1 GTATATATATTAATGGATTTTGGTGTTATATATAATAAATATGCATGGTTATATTGTAT
23107461 ACAATATATA
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
62 19 0.35
63 1 0.02
64 11 0.20
66 24 0.44
ACGTcount: A:0.30, C:0.05, G:0.20, T:0.46
Consensus pattern (62 bp):
GTATATATATTAATGGATTTTGGTGTTATATATAATAAATATGCATGGTTATATTGTATGCG
Found at i:23107469 original size:62 final size:65
Alignment explanation
Indices: 23107337--23107471 Score: 177
Period size: 62 Copynumber: 2.1 Consensus size: 65
23107327 TTATATATAG
* * * * *
23107337 TATATATATTGATGGGTTTTGGTGTCATATATATAATATACATATGCATGGTTCTATTGTATGCG
1 TATATATATTAATGGATTTTGGTGT-ATATATATAATATACATATGCATGGTTATATTGTATACA
*
23107402 G
65 A
*
23107403 TATATATATTAATGGATTTTGGTGT-TATATATAATA-A-ATATGCATGGTTATGTTGTATACAA
1 TATATATATTAATGGATTTTGGTGTATATATATAATATACATATGCATGGTTATATTGTATACAA
23107465 TATATAT
1 TATATAT
23107472 TAGTGGATGT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
62 27 0.44
63 1 0.02
64 11 0.18
66 23 0.37
ACGTcount: A:0.32, C:0.05, G:0.18, T:0.45
Consensus pattern (65 bp):
TATATATATTAATGGATTTTGGTGTATATATATAATATACATATGCATGGTTATATTGTATACAA
Found at i:23107563 original size:26 final size:27
Alignment explanation
Indices: 23107505--23107583 Score: 83
Period size: 26 Copynumber: 3.0 Consensus size: 27
23107495 TATATTTGGG
* * *
23107505 TGCATGGGTATTA--ATATAATATATT
1 TGCATGGGTCTTACTATATAACATATA
* *
23107530 TGCGTGGGTCTTACTATGT-ACATATA
1 TGCATGGGTCTTACTATATAACATATA
*
23107556 TGCATGGGTCTTATTATATAACATATA
1 TGCATGGGTCTTACTATATAACATATA
23107583 T
1 T
23107584 AATTACGGGT
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
25 11 0.26
26 21 0.49
27 11 0.26
ACGTcount: A:0.30, C:0.10, G:0.18, T:0.42
Consensus pattern (27 bp):
TGCATGGGTCTTACTATATAACATATA
Found at i:23110518 original size:37 final size:37
Alignment explanation
Indices: 23110468--23110546 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
23110458 TTATTACGAA
* *
23110468 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
23110505 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
23110542 GTCTT
1 GTCTT
23110547 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:23110767 original size:47 final size:47
Alignment explanation
Indices: 23110665--23110973 Score: 492
Period size: 47 Copynumber: 6.6 Consensus size: 47
23110655 CCCTTCGAGA
* * * * * * * *
23110665 CTTATCACGTTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
23110712 CCTGTCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23110759 GTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23110806 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23110853 CTTATCCCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23110900 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23110947 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
23110974 ACCAACCCTT
Statistics
Matches: 243, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 243 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:23111315 original size:39 final size:40
Alignment explanation
Indices: 23111202--23111381 Score: 192
Period size: 40 Copynumber: 4.5 Consensus size: 40
23111192 CTCGTTCAAT
* * *
23111202 TGCCTTCGGGACATAGCTCGG-TTATAGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAA
* *
23111242 TGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAA
*
23111282 TGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCAC-AA
1 TGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAA
* * * *
23111320 TGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCACAAA
1 TGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCACAAA
23111361 -GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGACTTAGCCCGGA
23111382 CATCATTCAA
Statistics
Matches: 120, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
37 2 0.02
38 11 0.09
39 36 0.30
40 64 0.53
41 7 0.06
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAA
Found at i:23111365 original size:78 final size:80
Alignment explanation
Indices: 23111202--23111381 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 80
23111192 CTCGTTCAAT
* * * *
23111202 TGCCTTCGGGACATAGCTCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATA
*
23111266 TAGTAACTCGCACAAA
65 TAGTAACTAGCACAAA
* **
23111282 TGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCAC-AATGCCTTC-GGATCTTAGTCCGGATA
1 TGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATA
* *
23111344 TGGTCACTTAGCACAAA
65 TAGTAAC-TAGCACAAA
23111361 -GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGACTTAGCCCGGA
23111382 CATCATTCAA
Statistics
Matches: 86, Mismatches: 10, Indels: 9
0.82 0.10 0.09
Matches are distributed among these distances:
77 3 0.03
78 33 0.38
79 39 0.45
80 11 0.13
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (80 bp):
TGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATAT
AGTAACTAGCACAAA
Found at i:23115914 original size:20 final size:19
Alignment explanation
Indices: 23115870--23115919 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
23115860 ATATGTATTT
* *
23115870 TTAAATAATATTGATACAT
1 TTAAAAAATATTGATACAA
*
23115889 TTAAAACATATTGATAACAA
1 TTAAAAAATATTGAT-ACAA
23115909 TTAAAAAATAT
1 TTAAAAAATAT
23115920 ATTATTATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 13 0.50
20 13 0.50
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.36
Consensus pattern (19 bp):
TTAAAAAATATTGATACAA
Found at i:23117904 original size:29 final size:29
Alignment explanation
Indices: 23117836--23117904 Score: 68
Period size: 29 Copynumber: 2.3 Consensus size: 29
23117826 AACCAAAAAA
23117836 GGCCACTTTTTTTCAAAATTTACCGAAATG
1 GGCCA-TTTTTTTCAAAATTTACCGAAATG
** * * *
23117866 GGCCGGTTTTTT-AATTATTTATCGGAATG
1 GGCCATTTTTTTCAA-AATTTACCGAAATG
23117895 GGCCATTTTT
1 GGCCATTTTT
23117905 CGTGAAATCG
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
28 2 0.06
29 25 0.81
30 4 0.13
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.42
Consensus pattern (29 bp):
GGCCATTTTTTTCAAAATTTACCGAAATG
Done.