Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60343961
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 596159 characters in sequence are not A, C, G, or T
File 80 of 204
Found at i:24231716 original size:21 final size:21
Alignment explanation
Indices: 24231690--24231750 Score: 86
Period size: 21 Copynumber: 2.9 Consensus size: 21
24231680 ATTCTGGTGG
*
24231690 TCAGCTCTTTTGAGCTTCTAT
1 TCAGCTCTTATGAGCTTCTAT
* *
24231711 TTAGCTCTTATGAGCTTCTGT
1 TCAGCTCTTATGAGCTTCTAT
*
24231732 TCAACTCTTATGAGCTTCT
1 TCAGCTCTTATGAGCTTCT
24231751 GTTGGCGTGT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.16, C:0.23, G:0.15, T:0.46
Consensus pattern (21 bp):
TCAGCTCTTATGAGCTTCTAT
Found at i:24232592 original size:26 final size:26
Alignment explanation
Indices: 24232557--24232612 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
24232547 TATGCATAAC
* *
24232557 AGCCCAGTGCATCGCTTCCTTGGCAT
1 AGCCCAGTGCATAGCTGCCTTGGCAT
* *
24232583 AGCCCGGTGCATAGCTGCCTTGGCGT
1 AGCCCAGTGCATAGCTGCCTTGGCAT
24232609 AGCC
1 AGCC
24232613 TTGGCACCGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.14, C:0.34, G:0.29, T:0.23
Consensus pattern (26 bp):
AGCCCAGTGCATAGCTGCCTTGGCAT
Found at i:24232863 original size:16 final size:16
Alignment explanation
Indices: 24232844--24232874 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24232834 CCCTTTCTTT
*
24232844 GGCGTACCGTACTTAG
1 GGCGTACCATACTTAG
24232860 GGCGTACCATACTTA
1 GGCGTACCATACTTA
24232875 ACATCTCTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (16 bp):
GGCGTACCATACTTAG
Found at i:24233376 original size:29 final size:29
Alignment explanation
Indices: 24233344--24233409 Score: 96
Period size: 29 Copynumber: 2.3 Consensus size: 29
24233334 GGGATTGCCG
** * *
24233344 CAAAGGCTTTCTTATAACGGAGATCTCTA
1 CAAAGGCTTTCTTATAACAAAGATCACCA
24233373 CAAAGGCTTTCTTATAACAAAGATCACCA
1 CAAAGGCTTTCTTATAACAAAGATCACCA
24233402 CAAAGGCT
1 CAAAGGCT
24233410 CACTTTTAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (29 bp):
CAAAGGCTTTCTTATAACAAAGATCACCA
Found at i:24233425 original size:58 final size:58
Alignment explanation
Indices: 24233372--24233494 Score: 158
Period size: 58 Copynumber: 2.1 Consensus size: 58
24233362 GGAGATCTCT
**
24233372 ACAAAGGCTTTCTTATAACAAAGATCA-CCACAAAGGCTCACTTTTAACTGAGATAGCC
1 ACAAAGGCTCACTTATAACAAAGAT-AGCCACAAAGGCTCACTTTTAACTGAGATAGCC
* * ** *
24233430 ACAAATGCTCACTTTTAACTGAGATAGCCACAAAGGCTCACTTTTAACTGAGATAGTC
1 ACAAAGGCTCACTTATAACAAAGATAGCCACAAAGGCTCACTTTTAACTGAGATAGCC
*
24233488 ATAAAGG
1 ACAAAGG
24233495 AATCCTTTCA
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
57 1 0.02
58 54 0.98
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.25
Consensus pattern (58 bp):
ACAAAGGCTCACTTATAACAAAGATAGCCACAAAGGCTCACTTTTAACTGAGATAGCC
Found at i:24233502 original size:29 final size:29
Alignment explanation
Indices: 24233399--24233494 Score: 165
Period size: 29 Copynumber: 3.3 Consensus size: 29
24233389 ACAAAGATCA
24233399 CCACAAAGGCTCACTTTTAACTGAGATAG
1 CCACAAAGGCTCACTTTTAACTGAGATAG
*
24233428 CCACAAATGCTCACTTTTAACTGAGATAG
1 CCACAAAGGCTCACTTTTAACTGAGATAG
24233457 CCACAAAGGCTCACTTTTAACTGAGATAG
1 CCACAAAGGCTCACTTTTAACTGAGATAG
* *
24233486 TCATAAAGG
1 CCACAAAGG
24233495 AATCCTTTCA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (29 bp):
CCACAAAGGCTCACTTTTAACTGAGATAG
Found at i:24233551 original size:26 final size:26
Alignment explanation
Indices: 24233479--24233554 Score: 98
Period size: 26 Copynumber: 2.9 Consensus size: 26
24233469 ACTTTTAACT
* *
24233479 GAGATAGTCATAAAGGAATCCTTTCA
1 GAGATAGCCATAAAGGAGTCCTTTCA
* *
24233505 GAGATAGCCACAAAGGCGTCCTTTCA
1 GAGATAGCCATAAAGGAGTCCTTTCA
* *
24233531 GAGTTAGCCATAAAGGTGTCCTTT
1 GAGATAGCCATAAAGGAGTCCTTT
24233555 TATGGAAATT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (26 bp):
GAGATAGCCATAAAGGAGTCCTTTCA
Found at i:24236720 original size:16 final size:17
Alignment explanation
Indices: 24236699--24236733 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
24236689 TGCAACTACT
24236699 ATAAAA-CAATCTAATA
1 ATAAAACCAATCTAATA
24236715 ATAAAACCAATCTAATA
1 ATAAAACCAATCTAATA
24236732 AT
1 AT
24236734 GACATTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.60, C:0.14, G:0.00, T:0.26
Consensus pattern (17 bp):
ATAAAACCAATCTAATA
Found at i:24237207 original size:29 final size:29
Alignment explanation
Indices: 24237161--24237238 Score: 86
Period size: 29 Copynumber: 2.7 Consensus size: 29
24237151 GTACTCCCTA
* *
24237161 TTATAAGGAACCCCTTGTGGCAAT-TTCTG
1 TTATAAGGAAACCTTTGTGGCAATATT-TG
* * *
24237190 TTATAAGGAAATCTTTGTAGCTATATTTG
1 TTATAAGGAAACCTTTGTGGCAATATTTG
*
24237219 TTATAAGGAAGCCTTTGTGG
1 TTATAAGGAAACCTTTGTGG
24237239 TGATCTCTAC
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
29 38 0.95
30 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.38
Consensus pattern (29 bp):
TTATAAGGAAACCTTTGTGGCAATATTTG
Found at i:24237327 original size:29 final size:29
Alignment explanation
Indices: 24237223--24237431 Score: 170
Period size: 29 Copynumber: 7.2 Consensus size: 29
24237213 TATTTGTTAT
* * *
24237223 AAGGAAGCCTTTGTGG-TGATCTCTACTAT
1 AAGGATGCCTTTGTGGCT-ATCTCTATTAA
* * ** *
24237252 AAGGAAGCCTTTATGGAAATCTCTGTTAAA
1 AAGGATGCCTTTGTGGCTATCTCTATT-AA
* *
24237282 AAGGATGCCTTTATGGCTACCTCTATTAA
1 AAGGATGCCTTTGTGGCTATCTCTATTAA
* * * * *
24237311 ATGAATTCCTTTGTGGCAATCTCTGTTAA
1 AAGGATGCCTTTGTGGCTATCTCTATTAA
* * * *
24237340 AAGGATGCATTTATGGATATCTCAATTAA
1 AAGGATGCCTTTGTGGCTATCTCTATTAA
24237369 AAGGATGCCTTTGTGGCTATCTC-AGTTAA
1 AAGGATGCCTTTGTGGCTATCTCTA-TTAA
* * * *
24237398 ATGGATGCCCTTGTGGCTATCTTTGTTAA
1 AAGGATGCCTTTGTGGCTATCTCTATTAA
24237427 AAGGA
1 AAGGA
24237432 CACCTACATG
Statistics
Matches: 142, Mismatches: 34, Indels: 8
0.77 0.18 0.04
Matches are distributed among these distances:
28 1 0.01
29 118 0.83
30 23 0.16
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (29 bp):
AAGGATGCCTTTGTGGCTATCTCTATTAA
Found at i:24237333 original size:88 final size:87
Alignment explanation
Indices: 24237229--24237419 Score: 213
Period size: 87 Copynumber: 2.2 Consensus size: 87
24237219 TTATAAGGAA
** * * **
24237229 GCCTTTGTGGTGATCTCTACTATAAGGAAGCCTTTATGGAAATCTCTGTTAAAAAGGATGCCTTT
1 GCCTTTGTGGCAATCTCTACTAAAAGGAAGCATTTATGGAAATCTCAATT-AAAAGGATGCCTTT
24237294 ATGGCTACCTCTA-TTAAATGAAT
65 ATGGCTACCTC-AGTTAAATGAAT
* ** * * *
24237317 TCCTTTGTGGCAATCTCTGTTAAAAGGATGCATTTATGGATATCTCAATTAAAAGGATGCCTTTG
1 GCCTTTGTGGCAATCTCTACTAAAAGGAAGCATTTATGGAAATCTCAATTAAAAGGATGCCTTTA
* *
24237382 TGGCTATCTCAGTTAAATGGAT
66 TGGCTACCTCAGTTAAATGAAT
* *
24237404 GCCCTTGTGGCTATCT
1 GCCTTTGTGGCAATCT
24237420 TTGTTAAAAG
Statistics
Matches: 85, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
86 1 0.01
87 45 0.53
88 39 0.46
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.36
Consensus pattern (87 bp):
GCCTTTGTGGCAATCTCTACTAAAAGGAAGCATTTATGGAAATCTCAATTAAAAGGATGCCTTTA
TGGCTACCTCAGTTAAATGAAT
Found at i:24237414 original size:87 final size:88
Alignment explanation
Indices: 24237252--24237431 Score: 229
Period size: 87 Copynumber: 2.1 Consensus size: 88
24237242 TCTCTACTAT
* **
24237252 AAGGAAGCCTTTATGGAAATCTCTGTTAAAAAGGATGCCTTTATGGCTACCTCTATTAAATGAAT
1 AAGGAAGCATTTATGGAAATCTCAATTAAAAAGGATGCCTTTATGGCTACCTCTATTAAATGAAT
* *
24237317 TCCTTTGTGGCAATCTCTGTTAA
66 GCCCTTGTGGCAATCTCTGTTAA
* * * * *
24237340 AAGGATGCATTTATGGATATCTCAATT-AAAAGGATGCCTTTGTGGCTATCTC-AGTTAAATGGA
1 AAGGAAGCATTTATGGAAATCTCAATTAAAAAGGATGCCTTTATGGCTACCTCTA-TTAAATGAA
* *
24237403 TGCCCTTGTGGCTATCTTTGTTAA
65 TGCCCTTGTGGCAATCTCTGTTAA
24237427 AAGGA
1 AAGGA
24237432 CACCTACATG
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
86 1 0.01
87 56 0.71
88 22 0.28
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.35
Consensus pattern (88 bp):
AAGGAAGCATTTATGGAAATCTCAATTAAAAAGGATGCCTTTATGGCTACCTCTATTAAATGAAT
GCCCTTGTGGCAATCTCTGTTAA
Found at i:24237419 original size:58 final size:58
Alignment explanation
Indices: 24237217--24237419 Score: 192
Period size: 58 Copynumber: 3.5 Consensus size: 58
24237207 TAGCTATATT
* * * * * * * * *
24237217 TGTTATAAGGAAGCCTTTGTGG-TGATCTCTACTATAAGGAAGCCTTTATGGAAATCTC
1 TGTTAAAAGGATGCCTTTATGGCT-ATCTCAATTAAAAGGATGCCTTTGTGGCAATCTC
* * * * *
24237275 TGTTAAAAAGGATGCCTTTATGGCTACCTCTATTAAATGAATTCCTTTGTGGCAATCTC
1 TGTT-AAAAGGATGCCTTTATGGCTATCTCAATTAAAAGGATGCCTTTGTGGCAATCTC
* * *
24237334 TGTTAAAAGGATGCATTTATGGATATCTCAATTAAAAGGATGCCTTTGTGGCTATCTC
1 TGTTAAAAGGATGCCTTTATGGCTATCTCAATTAAAAGGATGCCTTTGTGGCAATCTC
* * * *
24237392 AGTTAAATGGATGCCCTTGTGGCTATCT
1 TGTTAAAAGGATGCCTTTATGGCTATCT
24237420 TTGTTAAAAG
Statistics
Matches: 117, Mismatches: 26, Indels: 4
0.80 0.18 0.03
Matches are distributed among these distances:
58 72 0.62
59 44 0.38
60 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (58 bp):
TGTTAAAAGGATGCCTTTATGGCTATCTCAATTAAAAGGATGCCTTTGTGGCAATCTC
Found at i:24238608 original size:51 final size:51
Alignment explanation
Indices: 24238553--24238650 Score: 135
Period size: 51 Copynumber: 1.9 Consensus size: 51
24238543 GCTACGTACT
* * *
24238553 TACCAAATTGTCATAGCCTT-TTTCATTTATAGTCTTACGCCATATACCTTA
1 TACCAAACTATCATAG-CTTCTTTCATCTATAGTCTTACGCCATATACCTTA
* *
24238604 TACCAAACTATCATAGCTTCTTTCATCTATGGTCTTATGCCATATAC
1 TACCAAACTATCATAGCTTCTTTCATCTATAGTCTTACGCCATATAC
24238651 TGTCGCCACG
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
50 3 0.07
51 38 0.93
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (51 bp):
TACCAAACTATCATAGCTTCTTTCATCTATAGTCTTACGCCATATACCTTA
Found at i:24246253 original size:10 final size:10
Alignment explanation
Indices: 24246238--24246288 Score: 57
Period size: 10 Copynumber: 5.0 Consensus size: 10
24246228 AAAGAGAATT
24246238 GAAAAAAAAA
1 GAAAAAAAAA
24246248 GAAAAAAAAA
1 GAAAAAAAAA
**
24246258 GAAAGTTAAAA
1 GAAA-AAAAAA
* *
24246269 GAACATAAAA
1 GAAAAAAAAA
24246279 GAAAAAAAAA
1 GAAAAAAAAA
24246289 TTAAATTGCT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
10 27 0.79
11 7 0.21
ACGTcount: A:0.80, C:0.02, G:0.12, T:0.06
Consensus pattern (10 bp):
GAAAAAAAAA
Found at i:24254300 original size:36 final size:37
Alignment explanation
Indices: 24254253--24254330 Score: 106
Period size: 36 Copynumber: 2.1 Consensus size: 37
24254243 TTATTACGAA
* *
24254253 GTCTTACCCGGACATAA-TCTCCACACGAAGTTAT-GG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
24254289 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
24254326 GTCTT
1 GTCTT
24254331 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
36 28 0.76
37 9 0.24
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:24254527 original size:47 final size:47
Alignment explanation
Indices: 24254449--24254996 Score: 880
Period size: 47 Copynumber: 11.7 Consensus size: 47
24254439 CCCTTCGGGA
* * * * * *
24254449 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24254496 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24254543 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24254590 CTTACCACATATATATACACTTTCACATTCATCACATCGGCCATTA---
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24254636 C--AT---ATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24254677 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24254726 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24254773 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24254820 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24254869 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24254916 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24254963 CTTATCACACATATACACTTTCACATCCATCACA
1 CTTATCACATATATACACTTTCACATTCATCACA
24254997 CTATAGGCCT
Statistics
Matches: 472, Mismatches: 14, Indels: 30
0.91 0.03 0.06
Matches are distributed among these distances:
38 5 0.01
39 30 0.06
41 1 0.00
43 2 0.00
44 1 0.00
46 1 0.00
47 303 0.64
48 30 0.06
49 99 0.21
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24254858 original size:143 final size:141
Alignment explanation
Indices: 24254449--24254996 Score: 880
Period size: 143 Copynumber: 3.9 Consensus size: 141
24254439 CCCTTCGGGA
* * * * * * * *
24254449 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
24254514 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
24254579 GGCCATTAGGC
131 GGCCATTAGGC
*
24254590 CTTACCACATATATATACACTTTCACATTCATCACATCGGCCATTA---C--AT---ATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
24254647 ACTTTCACATTCATCACATCGG-CATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
24254711 CATCGGCCATTAGGC
127 CATCGGCCATTAGGC
24254726 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
24254791 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
24254856 TCGGCCATTAGGC
129 TCGGCCATTAGGC
24254869 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
24254934 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATCCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
24254997 CTATAGGCCT
Statistics
Matches: 383, Mismatches: 11, Indels: 26
0.91 0.03 0.06
Matches are distributed among these distances:
134 52 0.14
135 30 0.08
136 46 0.12
137 1 0.00
138 1 0.00
139 2 0.01
140 1 0.00
141 31 0.08
142 30 0.08
143 189 0.49
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:24258698 original size:40 final size:40
Alignment explanation
Indices: 24258654--24258782 Score: 181
Period size: 40 Copynumber: 3.2 Consensus size: 40
24258644 TCTTCGAGGT
* * *
24258654 TTAGCACGGATATATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
* *
24258694 TTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
*
24258734 TTAGCCCGGATATATCACTTAGCAC-AAAGC-CTTCGGGAC
1 TTAGCCCGGATATATCAC-TAGCACGAATGCTCTTCGGGAC
24258773 TTAGCCCGGA
1 TTAGCCCGGA
24258783 CATCATTCAA
Statistics
Matches: 80, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 18 0.22
40 56 0.70
41 6 0.08
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
Found at i:24259129 original size:29 final size:29
Alignment explanation
Indices: 24259090--24259168 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
24259080 CTTAATAATC
*
24259090 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
24259120 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
24259149 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
24259169 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:24259209 original size:42 final size:43
Alignment explanation
Indices: 24259150--24259251 Score: 197
Period size: 42 Copynumber: 2.4 Consensus size: 43
24259140 TGCATTTCAA
24259150 GCCCGCACACTTAGTGCCAATCTCACAACC-TGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
24259192 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
24259235 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
24259252 TGAAAACCAA
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 30 0.51
43 29 0.49
ACGTcount: A:0.26, C:0.36, G:0.15, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:24261143 original size:37 final size:37
Alignment explanation
Indices: 24261093--24261171 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
24261083 TTATTACGAA
* *
24261093 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
24261130 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
24261167 GTCTT
1 GTCTT
24261172 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:24261511 original size:49 final size:47
Alignment explanation
Indices: 24261290--24261750 Score: 775
Period size: 47 Copynumber: 9.7 Consensus size: 47
24261280 CCCTTCGGGA
* * * * * *
24261290 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24261337 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24261384 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24261431 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24261478 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24261527 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24261576 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24261625 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24261672 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24261719 CTTATCACATATAT-CA-TTTCACA-TCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
24261751 AGAATCCTAA
Statistics
Matches: 402, Mismatches: 10, Indels: 7
0.96 0.02 0.02
Matches are distributed among these distances:
44 9 0.02
45 7 0.02
46 2 0.00
47 239 0.59
49 145 0.36
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24284843 original size:3 final size:3
Alignment explanation
Indices: 24284837--24284881 Score: 72
Period size: 3 Copynumber: 15.0 Consensus size: 3
24284827 ATCATCATCC
**
24284837 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA CCA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
24284882 CTACAACTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:24288509 original size:18 final size:19
Alignment explanation
Indices: 24288464--24288514 Score: 61
Period size: 18 Copynumber: 2.7 Consensus size: 19
24288454 ATACATCTGA
24288464 ATGCACATATATACTTATC
1 ATGCACATATATACTTATC
**
24288483 ATGTGCATATA-A-TTGATC
1 ATGCACATATATACTT-ATC
24288501 ATGCACATATATAC
1 ATGCACATATATAC
24288515 CAATCACATT
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
17 2 0.08
18 13 0.52
19 10 0.40
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (19 bp):
ATGCACATATATACTTATC
Found at i:24288585 original size:11 final size:11
Alignment explanation
Indices: 24288569--24288609 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
24288559 TTTATACCTG
24288569 AATACATAGCT
1 AATACATAGCT
24288580 AATACATA-CAT
1 AATACATAGC-T
*
24288591 TATACATAGCT
1 AATACATAGCT
24288602 AATACATA
1 AATACATA
24288610 CATTCTAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
10 1 0.04
11 24 0.92
12 1 0.04
ACGTcount: A:0.49, C:0.17, G:0.05, T:0.29
Consensus pattern (11 bp):
AATACATAGCT
Found at i:24288595 original size:22 final size:22
Alignment explanation
Indices: 24288570--24288613 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
24288560 TTATACCTGA
24288570 ATACATAGCTAATACATACATT
1 ATACATAGCTAATACATACATT
24288592 ATACATAGCTAATACATACATT
1 ATACATAGCTAATACATACATT
24288614 CTAATATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.18, G:0.05, T:0.32
Consensus pattern (22 bp):
ATACATAGCTAATACATACATT
Found at i:24294415 original size:21 final size:21
Alignment explanation
Indices: 24294391--24294434 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
24294381 TGTGGCTGTG
*
24294391 TCTGATTTTGGTGTGGATGCA
1 TCTGACTTTGGTGTGGATGCA
*
24294412 TCTGACTTTGTTGTGGATGCA
1 TCTGACTTTGGTGTGGATGCA
24294433 TC
1 TC
24294435 CGAGTGTGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.14, G:0.30, T:0.43
Consensus pattern (21 bp):
TCTGACTTTGGTGTGGATGCA
Found at i:24295871 original size:17 final size:16
Alignment explanation
Indices: 24295840--24295873 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
24295830 AAATATTATG
24295840 AAATAAAAACAAACAA
1 AAATAAAAACAAACAA
*
24295856 AAATAAACATCAAACAA
1 AAATAAA-AACAAACAA
24295873 A
1 A
24295874 TGCAATCCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.76, C:0.15, G:0.00, T:0.09
Consensus pattern (16 bp):
AAATAAAAACAAACAA
Found at i:24304253 original size:21 final size:21
Alignment explanation
Indices: 24304212--24304253 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
24304202 TTTCGATTCG
**
24304212 ATCCAATATTTCTTTTATATT
1 ATCCAATATTTCAGTTATATT
24304233 ATCCAAGTATTTCAGTT-TATT
1 ATCCAA-TATTTCAGTTATATT
24304254 TTCCTTTACA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.29, C:0.14, G:0.05, T:0.52
Consensus pattern (21 bp):
ATCCAATATTTCAGTTATATT
Found at i:24318512 original size:37 final size:36
Alignment explanation
Indices: 24318436--24318512 Score: 86
Period size: 37 Copynumber: 2.1 Consensus size: 36
24318426 ATTCCAAAAA
* *
24318436 TAATATTATTTTAATAGTTTAATATTAAATTTAGTT
1 TAATATTATCTTAATAGTTTAATATTAAATTTAATT
*
24318472 TAATACTTATCTTAATAGTATT-TTATT-AATTTAATAT
1 TAATA-TTATCTTAATAGT-TTAATATTAAATTTAAT-T
24318509 TAAT
1 TAAT
24318513 GTGATTATCG
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
36 12 0.34
37 21 0.60
38 2 0.06
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.55
Consensus pattern (36 bp):
TAATATTATCTTAATAGTTTAATATTAAATTTAATT
Found at i:24329235 original size:82 final size:81
Alignment explanation
Indices: 24329127--24329354 Score: 323
Period size: 82 Copynumber: 2.8 Consensus size: 81
24329117 GTGTAAAACA
24329127 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTGAGTCATTTTACC
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTGAGTCATTTTACC
* * *
24329192 CTATGGGGGTATTTTG
66 CTATAGCGGTATTTCG
* * * *
24329208 GTCATTTTTACCCAATGGGGGTATTTCGGTCATTTTACCCTATGGGGTTATTTCAATCATTTTAC
1 GTCA-TTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTGAGTCATTTTAC
*
24329273 CTTATAGCGGTATTTCG
65 CCTATAGCGGTATTTCG
* * **
24329290 GTCATTTTACCCTATAGGGGTATTTCGGTCATTTTACCTTATAAGGGTATTTTG-GTCATTTTAC
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTA-TTTGAGTCATTTTAC
24329354 C
65 C
24329355 TATTTTAGGG
Statistics
Matches: 129, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
81 53 0.41
82 76 0.59
ACGTcount: A:0.18, C:0.17, G:0.21, T:0.43
Consensus pattern (81 bp):
GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTGAGTCATTTTACC
CTATAGCGGTATTTCG
Found at i:24329355 original size:27 final size:27
Alignment explanation
Indices: 24329127--24329354 Score: 314
Period size: 27 Copynumber: 8.4 Consensus size: 27
24329117 GTGTAAAACA
24329127 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
24329154 GTCATTTTACCCTATGGGGGTATTT-G
1 GTCATTTTACCCTATGGGGGTATTTCG
*
24329180 AGTCATTTTACCCTATGGGGGTATTTTG
1 -GTCATTTTACCCTATGGGGGTATTTCG
*
24329208 GTCATTTTTACCCAATGGGGGTATTTCG
1 GTCA-TTTTACCCTATGGGGGTATTTCG
* *
24329236 GTCATTTTACCCTATGGGGTTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * *
24329263 ATCATTTTACCTTATAGCGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
24329290 GTCATTTTACCCTATAGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* ** *
24329317 GTCATTTTACCTTATAAGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
24329344 GTCATTTTACC
1 GTCATTTTACC
24329355 TATTTTAGGG
Statistics
Matches: 181, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
26 1 0.01
27 154 0.85
28 26 0.14
ACGTcount: A:0.18, C:0.17, G:0.21, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:24340918 original size:24 final size:25
Alignment explanation
Indices: 24340877--24340933 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
24340867 AAAAAAATTC
*
24340877 AAAAAAAGTGAAAAAAAA-TCGAGCA
1 AAAAAAAGTAAAAAAAAAGT-GAGCA
24340902 AAAAAAAG-AAAAAAAAAGGTGAGCA
1 AAAAAAAGTAAAAAAAAA-GTGAGCA
24340927 AAAAAAA
1 AAAAAAA
24340934 ATCAAGTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 8 0.28
25 20 0.69
26 1 0.03
ACGTcount: A:0.74, C:0.05, G:0.16, T:0.05
Consensus pattern (25 bp):
AAAAAAAGTAAAAAAAAAGTGAGCA
Found at i:24348205 original size:25 final size:25
Alignment explanation
Indices: 24348177--24348228 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
24348167 TGTAGCTACG
*
24348177 TTCTGAC-CTACAACTCGTGTGAGTA
1 TTCTGACTC-ACAACTCATGTGAGTA
*
24348202 TTCTGATTCACAACTCATGTGAGTA
1 TTCTGACTCACAACTCATGTGAGTA
24348227 TT
1 TT
24348229 TCGATTCACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 23 0.96
26 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (25 bp):
TTCTGACTCACAACTCATGTGAGTA
Found at i:24348234 original size:25 final size:25
Alignment explanation
Indices: 24348186--24348238 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 25
24348176 GTTCTGACCT
*
24348186 ACAACTCGTGTGAGTATTCTGATTC
1 ACAACTCATGTGAGTATTCTGATTC
24348211 ACAACTCATGTGAGTATT-TCGATTC
1 ACAACTCATGTGAGTATTCT-GATTC
24348236 ACA
1 ACA
24348239 GCTTGTGAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
24 1 0.04
25 25 0.96
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (25 bp):
ACAACTCATGTGAGTATTCTGATTC
Found at i:24354598 original size:6 final size:6
Alignment explanation
Indices: 24354587--24354613 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
24354577 TCGATGTTTA
24354587 TTTTTG TTTTTG TTTTTG TTTTTG TTT
1 TTTTTG TTTTTG TTTTTG TTTTTG TTT
24354614 GTTTTTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (6 bp):
TTTTTG
Found at i:24415052 original size:13 final size:13
Alignment explanation
Indices: 24415034--24415058 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24415024 GTCAATTTAT
24415034 GTGTGAAAATTTC
1 GTGTGAAAATTTC
24415047 GTGTGAAAATTT
1 GTGTGAAAATTT
24415059 TATCATTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:24428886 original size:16 final size:16
Alignment explanation
Indices: 24428847--24428880 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
24428837 ACACTTGTCT
**
24428847 ACTATCTATCGTTTTC
1 ACTATCTAAAGTTTTC
24428863 ACTATCTAAAGTTTTC
1 ACTATCTAAAGTTTTC
24428879 AC
1 AC
24428881 AGTCTATAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (16 bp):
ACTATCTAAAGTTTTC
Found at i:24428891 original size:16 final size:16
Alignment explanation
Indices: 24428851--24428924 Score: 60
Period size: 16 Copynumber: 4.6 Consensus size: 16
24428841 TTGTCTACTA
*
24428851 TCTATCGTTTTCACTA-
1 TCTATAGTTTTCAC-AG
*
24428867 TCTAAAGTTTTCACAG
1 TCTATAGTTTTCACAG
* * *
24428883 TCTATAGTTCTCTCAA
1 TCTATAGTTTTCACAG
* *
24428899 CCTATAGTTTTTCACGG
1 TCTATAG-TTTTCACAG
24428916 TCTATAGTT
1 TCTATAGTT
24428925 GTCTTAGTAT
Statistics
Matches: 44, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
15 1 0.02
16 32 0.73
17 11 0.25
ACGTcount: A:0.23, C:0.22, G:0.11, T:0.45
Consensus pattern (16 bp):
TCTATAGTTTTCACAG
Found at i:24429869 original size:29 final size:29
Alignment explanation
Indices: 24429837--24429898 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 29
24429827 CGTAATTTAA
*
24429837 CATAAAAAGTCACAAAT-AGCAAT-AAAGTC
1 CATAAAAA-TC-CAAATCAGAAATAAAAGTC
*
24429866 CATAAAAATCCAAATCATAAATAAAAGTC
1 CATAAAAATCCAAATCAGAAATAAAAGTC
24429895 CATA
1 CATA
24429899 TTTATTTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 5 0.17
28 6 0.21
29 18 0.62
ACGTcount: A:0.56, C:0.18, G:0.06, T:0.19
Consensus pattern (29 bp):
CATAAAAATCCAAATCAGAAATAAAAGTC
Found at i:24440557 original size:25 final size:25
Alignment explanation
Indices: 24440494--24440569 Score: 80
Period size: 25 Copynumber: 3.0 Consensus size: 25
24440484 CTTACGAGCT
* *
24440494 ATAATGATAAGCTCCTCTGAACTGA
1 ATAACGATAAGCTCCTCCGAACTGA
* * * *
24440519 ATAGCGGTAGGCTCCTCCGATCTGA
1 ATAACGATAAGCTCCTCCGAACTGA
* *
24440544 ATAACGATAAGCTCATACGAACTGA
1 ATAACGATAAGCTCCTCCGAACTGA
24440569 A
1 A
24440570 ATTAATAACC
Statistics
Matches: 39, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (25 bp):
ATAACGATAAGCTCCTCCGAACTGA
Found at i:24445144 original size:114 final size:114
Alignment explanation
Indices: 24445013--24445730 Score: 743
Period size: 114 Copynumber: 6.3 Consensus size: 114
24445003 GGCGCTTACG
* * * * * * *
24445013 AAAAAATGCCGGTAATGTATAGTATTAGCGGCGCTTATGGGAAGCGCCGCAAA-CGATGTTAACC
1 AAAAAACGCCGCTAAAGTATAGTATTAGCGGCGTTTGTCGGAAGCGCCGCAAATC-ATCTTAACC
* *
24445077 AAAACGCAGAG-TTTGGTCTTGATGTA-TATT-GCAATTAGTGGCGCTT-AT
65 AAAACGCAGAGTTTTGGTCTTTA-GGAGTATTAG-AATTAGTGGCGCTTGAT
* * * * ** * *
24445125 AAATAAAACGCCGCTAATGTATAGTATTAGTGGCGCATAG-CATTAAACGCCGCAAGAT-ATCCT
1 -AA-AAAACGCCGCTAAAGTATAGTATTAGCGGCG-TTTGTC-GGAAGCGCCGCAA-ATCATCTT
* *** * * * *
24445188 AATCAAAACGCTCCGTTTTGGTCTTGATGTA-TACTATAATTAGTGGCG-TT--T
61 AACCAAAACGCAGAGTTTTGGTCTTTA-GGAGTATTAGAATTAGTGGCGCTTGAT
* * *
24445239 AAGGAAAACGCCAG-TAAAGGATAGT-TATAGCAGCGTTTGGTGGGAAGCGCTTC-CAAAT-ATC
1 AA--AAAACGCC-GCTAAAGTATAGTAT-TAGCGGCGTTT-GTCGGAAGCGC--CGCAAATCATC
*
24445300 TTAACCAAAACGCAGAGTTTTGGTCTTTAGGAGTATTAGAATTAGTGGCACTTGAT
59 TTAACCAAAACGCAGAGTTTTGGTCTTTAGGAGTATTAGAATTAGTGGCGCTTGAT
* * * *
24445356 AAAAAACGCCACTAAAGTATA-TCATCAGCGGCGTTTGTCAGATGCGCCGCAAATCATCTTAACC
1 AAAAAACGCCGCTAAAGTATAGT-ATTAGCGGCGTTTGTCGGAAGCGCCGCAAATCATCTTAACC
*
24445420 AAAACGCAGAGTTTTGGTCTTTAGGAGTATTAGAATTAGTCGCGCTTGAT
65 AAAACGCAGAGTTTTGGTCTTTAGGAGTATTAGAATTAGTGGCGCTTGAT
* * *
24445470 TAAAAACGCCGCTAAAGTACA-TCATTAGCGGCGTTTGTCGGATGCGCCGCAAATCATCTTAACC
1 AAAAAACGCCGCTAAAGTATAGT-ATTAGCGGCGTTTGTCGGAAGCGCCGCAAATCATCTTAACC
*
24445534 AAAACACAGAGTTTTGGTCTTTAGGAGTATTAGAATTAGTGGCGCTTGAT
65 AAAACGCAGAGTTTTGGTCTTTAGGAGTATTAGAATTAGTGGCGCTTGAT
* * * *
24445584 TAAAAACGCCGCTAAAGTATA-TCATCAGCGGCATTTGTCGGATGCGCCGCAAATCATCTTAACC
1 AAAAAACGCCGCTAAAGTATAGT-ATTAGCGGCGTTTGTCGGAAGCGCCGCAAATCATCTTAACC
24445648 AAAACGCAGAGTTTTGGTCTTTAGGAGTATTAGAATTAGTGGCGCTTGAT
65 AAAACGCAGAGTTTTGGTCTTTAGGAGTATTAGAATTAGTGGCGCTTGAT
* *
24445698 TAAAAACGCCGCTGAAGTATAGTATTAGCGGCG
1 AAAAAACGCCGCTAAAGTATAGTATTAGCGGCG
24445731 CTTTTACGAA
Statistics
Matches: 519, Mismatches: 62, Indels: 47
0.83 0.10 0.07
Matches are distributed among these distances:
112 1 0.00
113 13 0.03
114 411 0.79
115 59 0.11
116 32 0.06
117 3 0.01
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (114 bp):
AAAAAACGCCGCTAAAGTATAGTATTAGCGGCGTTTGTCGGAAGCGCCGCAAATCATCTTAACCA
AAACGCAGAGTTTTGGTCTTTAGGAGTATTAGAATTAGTGGCGCTTGAT
Found at i:24446003 original size:20 final size:20
Alignment explanation
Indices: 24445978--24446016 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
24445968 TGATTGATTT
24445978 ATAATTT-ATATATATATTAA
1 ATAATTTCATATATA-ATTAA
24445998 ATAATTTCATATATAATTA
1 ATAATTTCATATATAATTA
24446017 TAAAAGATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (20 bp):
ATAATTTCATATATAATTAA
Found at i:24446803 original size:7 final size:7
Alignment explanation
Indices: 24446784--24446858 Score: 87
Period size: 7 Copynumber: 10.6 Consensus size: 7
24446774 CTTTTACTGC
24446784 TTGGGGTT
1 TTGGGG-T
24446792 TTGGGGT
1 TTGGGGT
24446799 TTGGGGT
1 TTGGGGT
*
24446806 TTAGGGT
1 TTGGGGT
* *
24446813 TTGTGAT
1 TTGGGGT
24446820 TTGGGGT
1 TTGGGGT
*
24446827 GTGGGGT
1 TTGGGGT
* *
24446834 TTAGGGA
1 TTGGGGT
24446841 TTGGGGT
1 TTGGGGT
24446848 TTGGGGT
1 TTGGGGT
24446855 TTGG
1 TTGG
24446859 TTTTTGAGGT
Statistics
Matches: 55, Mismatches: 12, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
7 49 0.89
8 6 0.11
ACGTcount: A:0.05, C:0.00, G:0.52, T:0.43
Consensus pattern (7 bp):
TTGGGGT
Found at i:24446822 original size:28 final size:28
Alignment explanation
Indices: 24446791--24446858 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
24446781 TGCTTGGGGT
* *
24446791 TTTGGGGTTTGGGGTTTAGGGTTTGTGA
1 TTTGGGGTTTGGGGTTTAGGGATTGGGA
* *
24446819 TTTGGGGTGTGGGGTTTAGGGATTGGGG
1 TTTGGGGTTTGGGGTTTAGGGATTGGGA
24446847 TTTGGGGTTTGG
1 TTTGGGGTTTGG
24446859 TTTTTGAGGT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.06, C:0.00, G:0.51, T:0.43
Consensus pattern (28 bp):
TTTGGGGTTTGGGGTTTAGGGATTGGGA
Found at i:24449493 original size:16 final size:16
Alignment explanation
Indices: 24449472--24449507 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
24449462 GTATTTATAA
*
24449472 TTATCGATTTGCAATT
1 TTATCGATTTACAATT
24449488 TTATCGATTTACAATT
1 TTATCGATTTACAATT
24449504 TTAT
1 TTAT
24449508 TTCAATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.28, C:0.11, G:0.08, T:0.53
Consensus pattern (16 bp):
TTATCGATTTACAATT
Found at i:24449644 original size:67 final size:67
Alignment explanation
Indices: 24449567--24449705 Score: 253
Period size: 67 Copynumber: 2.1 Consensus size: 67
24449557 ATTAATTGAT
*
24449567 TGAATGTCAATGAATTATCAATTTTGGTTA-TGTAATTGATTGAATGTTTTATAAATTCATTATA
1 TGAATGTCAATGAATTATCAATTTTGGTTAGT-TAATTGATTGAATGTTTAATAAATTCATTATA
24449631 TAA
65 TAA
24449634 TGAATGTCAATGAATTATCAATTTTGGTTAGTTAATTGATTGAATGTTTAATAAATTCATTATAT
1 TGAATGTCAATGAATTATCAATTTTGGTTAGTTAATTGATTGAATGTTTAATAAATTCATTATAT
24449699 AA
66 AA
24449701 TGAAT
1 TGAAT
24449706 TCTCAACAAA
Statistics
Matches: 70, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
67 69 0.99
68 1 0.01
ACGTcount: A:0.37, C:0.04, G:0.14, T:0.45
Consensus pattern (67 bp):
TGAATGTCAATGAATTATCAATTTTGGTTAGTTAATTGATTGAATGTTTAATAAATTCATTATAT
AA
Found at i:24449923 original size:76 final size:76
Alignment explanation
Indices: 24449829--24450435 Score: 1136
Period size: 76 Copynumber: 8.1 Consensus size: 76
24449819 ATTTCATTTA
*
24449829 ACTTATTAATGAATATATATTTTAAAATTAATATCTTACATTACTTAAATATATATTATTAAGTA
1 ACTTATTAATGAATATATATTTTAAAATTGATATCTTACATTACTTAAATATATATTATTAAGTA
24449894 TATTTTACATG
66 TATTTTACATG
24449905 ACTTATTAATGAATATATATTTTAAAATTGATATCTTACATTACTTAAATATATATTATTAAGTA
1 ACTTATTAATGAATATATATTTTAAAATTGATATCTTACATTACTTAAATATATATTATTAAGTA
24449970 TATTTTACATG
66 TATTTTACATG
24449981 ACTTATTAATGAATATATATTTTAAAATTGATATCTTACATTACTTAAATATATATTATTAAGTA
1 ACTTATTAATGAATATATATTTTAAAATTGATATCTTACATTACTTAAATATATATTATTAAGTA
24450046 TATTTTACATG
66 TATTTTACATG
24450057 ACTTATTAATGAATATATATTTTAAAATTGATATCTTACATTACTTAAATATATATTATTAAGTA
1 ACTTATTAATGAATATATATTTTAAAATTGATATCTTACATTACTTAAATATATATTATTAAGTA
*
24450122 TATTTTACACG
66 TATTTTACATG
24450133 ACTTATTAATGAATATATATTTTAAAATTGATATCTTACATTACTTAAATATATATTATTAAGTA
1 ACTTATTAATGAATATATATTTTAAAATTGATATCTTACATTACTTAAATATATATTATTAAGTA
24450198 TATTTTACATG
66 TATTTTACATG
24450209 ACTTATTAAT--ATAT-TATTTTAAAATTGATATCTTACATTACTTAAATATATATTATTAAGTA
1 ACTTATTAATGAATATATATTTTAAAATTGATATCTTACATTACTTAAATATATATTATTAAGTA
*
24450271 TATTTTACACG
66 TATTTTACATG
24450282 ACTTATTAATGAATATATATTTTAAAATTGATATCTTACATTACTTAAATATATATTATTAAGTA
1 ACTTATTAATGAATATATATTTTAAAATTGATATCTTACATTACTTAAATATATATTATTAAGTA
24450347 TATTTTACATG
66 TATTTTACATG
24450358 ACTTATTAAT--ATAT-TATTTTAAAATTGATATCTTACATTACTTAAATATATATTATTAAGTA
1 ACTTATTAATGAATATATATTTTAAAATTGATATCTTACATTACTTAAATATATATTATTAAGTA
*
24450420 CATTTTACATG
66 TATTTTACATG
24450431 ACTTA
1 ACTTA
24450436 CATTACTTAC
Statistics
Matches: 522, Mismatches: 6, Indels: 9
0.97 0.01 0.02
Matches are distributed among these distances:
73 131 0.25
74 8 0.02
75 4 0.01
76 379 0.73
ACGTcount: A:0.41, C:0.07, G:0.05, T:0.47
Consensus pattern (76 bp):
ACTTATTAATGAATATATATTTTAAAATTGATATCTTACATTACTTAAATATATATTATTAAGTA
TATTTTACATG
Found at i:24450544 original size:16 final size:16
Alignment explanation
Indices: 24450523--24450565 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
24450513 ACACTTATTA
24450523 AACTTACATAATACAT
1 AACTTACATAATACAT
24450539 AACTTACATAATACAT
1 AACTTACATAATACAT
* *
24450555 GACTTATATAA
1 AACTTACATAA
24450566 AATTCTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (16 bp):
AACTTACATAATACAT
Found at i:24450693 original size:9 final size:9
Alignment explanation
Indices: 24450606--24450813 Score: 121
Period size: 9 Copynumber: 23.8 Consensus size: 9
24450596 AGTTACATAT
*
24450606 TAACTTATA
1 TAACTTACA
24450615 TAAGCTTACA
1 TAA-CTTACA
*
24450625 TAA-TACACA
1 TAACT-TACA
*
24450634 TTACTTACA
1 TAACTTACA
* * *
24450643 TAGCATCCA
1 TAACTTACA
24450652 TAACTTACA
1 TAACTTACA
* *
24450661 CAACTTAAA
1 TAACTTACA
24450670 TAA--TACA
1 TAACTTACA
* *
24450677 AAAATTACA
1 TAACTTACA
24450686 TAACTTACA
1 TAACTTACA
*
24450695 TAACCTACA
1 TAACTTACA
*
24450704 TAATACATA-A
1 T-A-ACTTACA
24450714 TAACTTAC-
1 TAACTTACA
24450722 -AACTTACA
1 TAACTTACA
*
24450730 TAACATACA
1 TAACTTACA
* **
24450739 TTACTTTGA
1 TAACTTACA
*
24450748 AAACTTACA
1 TAACTTACA
24450757 TAACTTACA
1 TAACTTACA
24450766 T-AC-TACA
1 TAACTTACA
* *
24450773 CAACTTAAA
1 TAACTTACA
* *
24450782 TAGCTTACT
1 TAACTTACA
24450791 TAA--TACA
1 TAACTTACA
24450798 TAACTTACA
1 TAACTTACA
24450807 TAACTTA
1 TAACTTA
24450814 TACATGTACA
Statistics
Matches: 146, Mismatches: 39, Indels: 28
0.69 0.18 0.13
Matches are distributed among these distances:
7 22 0.15
8 9 0.06
9 99 0.68
10 12 0.08
11 4 0.03
ACGTcount: A:0.46, C:0.21, G:0.02, T:0.31
Consensus pattern (9 bp):
TAACTTACA
Found at i:24450788 original size:25 final size:25
Alignment explanation
Indices: 24450749--24450813 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
24450739 TTACTTTGAA
*
24450749 AACTTACATAACTTACATACTACAC
1 AACTTACATAACTTACATAATACAC
* * * *
24450774 AACTTAAATAGCTTACTTAATACAT
1 AACTTACATAACTTACATAATACAC
24450799 AACTTACATAACTTA
1 AACTTACATAACTTA
24450814 TACATGTACA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.45, C:0.22, G:0.02, T:0.32
Consensus pattern (25 bp):
AACTTACATAACTTACATAATACAC
Found at i:24456331 original size:21 final size:21
Alignment explanation
Indices: 24456305--24456354 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
24456295 CAACAACTTA
*
24456305 AAGCAGAGGCTGCAGCGAGAG
1 AAGCAGAGGCTGCAGCAAGAG
*
24456326 AAGCAGAAGCTGCAGCAAGAG
1 AAGCAGAGGCTGCAGCAAGAG
24456347 AAGCAGAG
1 AAGCAGAG
24456355 CACGCCAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.40, C:0.18, G:0.38, T:0.04
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCAAGAG
Found at i:24456854 original size:42 final size:41
Alignment explanation
Indices: 24456715--24456963 Score: 259
Period size: 43 Copynumber: 5.9 Consensus size: 41
24456705 TAAGAATAAA
* * *
24456715 CGCCGCTAAAAGAGCAT-TGTCTTTAGCGTCGTTTCTTTTTAAAG
1 CGCCGCT-AAAGAACATGT-TCTTTAGCGGCGTTT-TTTCT-AAG
* *
24456759 CGCCGCTAAAGAACATTTTTTTTAGCGGCGTTTCTTTTCTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCG-TT-TTTTCTAAG
24456802 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTGTTCTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTT-TTCTAAG
* ****
24456844 CGCCGCTAAAGAACATGTTCTTTAGCGGCG-CTTAGAAAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCTAAG
* *
24456884 AAACGCCGCTAAAAAAAATGTTCTTTAGCGGCGTTTTTTCCTAAG
1 ---CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTT-CTAAG
* *
24456929 CGCCGCTAAAGAACATGGTCTTTAGCGGCGCTTTT
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTT
24456964 ATTTGAAAAC
Statistics
Matches: 174, Mismatches: 22, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
40 3 0.02
41 4 0.02
42 70 0.40
43 77 0.44
44 16 0.09
45 4 0.02
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (41 bp):
CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCTAAG
Found at i:24456873 original size:85 final size:84
Alignment explanation
Indices: 24456676--24456961 Score: 312
Period size: 85 Copynumber: 3.4 Consensus size: 84
24456666 TTTACAAAAA
* * *
24456676 CGCCGCTAAAGAACA---TCTTTAGCGGCGCTTA-AGAATAAACGCCGCTAAAAGAGCAT-TGTC
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAAAAGAAACGCCGCT-AAAGAACATGT-TC
* *
24456736 TTTAGCGTCGTTTCTTTTTAAAG
64 TTTAGCGGCGTTT-TTTCT-AAG
* * * ******* *
24456759 CGCCGCTAAAGAACATTTTTTTTAGCGGCGTTTCTTTTCTAAGCGCCGCTAAAGAACATGTTCTT
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAAAAGAAACGCCGCTAAAGAACATGTTCTT
24456824 TAGCGGCGTTTTGTTCTAAG
66 TAGCGGCGTTTT-TTCTAAG
* *
24456844 CGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAAAAGAAACGCCGCTAAAAAAAATGTTCTT
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAAAAGAAACGCCGCTAAAGAACATGTTCTT
24456909 TAGCGGCGTTTTTTCCTAAG
66 TAGCGGCGTTTTTT-CTAAG
*
24456929 CGCCGCTAAAGAACATGGTCTTTAGCGGCGCTT
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGCTT
24456962 TTATTTGAAA
Statistics
Matches: 171, Mismatches: 25, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
83 15 0.09
84 2 0.01
85 105 0.61
86 38 0.22
87 11 0.06
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (84 bp):
CGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAAAAGAAACGCCGCTAAAGAACATGTTCTT
TAGCGGCGTTTTTTCTAAG
Found at i:24460237 original size:50 final size:50
Alignment explanation
Indices: 24460116--24460358 Score: 398
Period size: 50 Copynumber: 4.8 Consensus size: 50
24460106 GATAATAACA
* *
24460116 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTCCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATCT-CTCATCTCGG
*
24460167 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATCTCTCATCTCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATCTCTCATCTCGG
*
24460217 TGCCAACGCCATG-CCTCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCC-CAGACATGGTCTTACATGGGATCTCTCATCTCGG
* *
24460267 TGCCAACGACATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATCTCTCATCTCGG
*
24460317 TGCCAACGCCACGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
24460359 TTACCCAAAT
Statistics
Matches: 181, Mismatches: 9, Indels: 5
0.93 0.05 0.03
Matches are distributed among these distances:
49 2 0.01
50 139 0.77
51 40 0.22
ACGTcount: A:0.21, C:0.32, G:0.22, T:0.25
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATCTCTCATCTCGG
Found at i:24464027 original size:3 final size:3
Alignment explanation
Indices: 24464019--24464064 Score: 83
Period size: 3 Copynumber: 15.3 Consensus size: 3
24464009 TTTCTACATT
*
24464019 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ACC ATC ATC A
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC A
24464065 CAAGAATCCT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.30
Consensus pattern (3 bp):
ATC
Found at i:24469497 original size:18 final size:20
Alignment explanation
Indices: 24469479--24469516 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
24469469 ATCTTTACTC
24469479 TTCT-CTTCTCCTTTCCTCTA
1 TTCTACTTCTCCTTTCCTC-A
*
24469499 TTCTACTTCTCCTCTCCT
1 TTCTACTTCTCCTTTCCT
24469517 TTCAATAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.05, C:0.42, G:0.00, T:0.53
Consensus pattern (20 bp):
TTCTACTTCTCCTTTCCTCA
Found at i:24475410 original size:50 final size:50
Alignment explanation
Indices: 24475312--24475417 Score: 122
Period size: 50 Copynumber: 2.1 Consensus size: 50
24475302 TATTGAGGTT
* * * * * * *
24475312 ATGAGAGGTCCCACATAAGACCATGTTTGGGACATTGCTTTGGTACCGAG
1 ATGAGAGGTCCCACATAAGACCACGTCTAGGACATGGCATGGGCACCGAG
* * *
24475362 ATGAGAGGTCCCCCGTAAGACCACGTCTAGGACATGGCATGGGCACCGAT
1 ATGAGAGGTCCCACATAAGACCACGTCTAGGACATGGCATGGGCACCGAG
24475412 ATGAGA
1 ATGAGA
24475418 ACTCTCATGT
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (50 bp):
ATGAGAGGTCCCACATAAGACCACGTCTAGGACATGGCATGGGCACCGAG
Found at i:24475740 original size:16 final size:16
Alignment explanation
Indices: 24475720--24475758 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
24475710 ATAAGCAAGT
*
24475720 AAGTAAACAAATAAGA
1 AAGTAAACAAAGAAGA
* *
24475736 GAGTAAATAAAGAAGA
1 AAGTAAACAAAGAAGA
24475752 AAGTAAA
1 AAGTAAA
24475759 GATCATGTTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.67, C:0.03, G:0.18, T:0.13
Consensus pattern (16 bp):
AAGTAAACAAAGAAGA
Found at i:24475740 original size:20 final size:20
Alignment explanation
Indices: 24475708--24475746 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
24475698 TGAGTTATTT
*
24475708 AAATAAGCAAGTAAGTAAAC
1 AAATAAGCAAGTAAATAAAC
24475728 AAATAAG-AGAGTAAATAAA
1 AAATAAGCA-AGTAAATAAA
24475747 GAAGAAAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.64, C:0.05, G:0.15, T:0.15
Consensus pattern (20 bp):
AAATAAGCAAGTAAATAAAC
Found at i:24492535 original size:44 final size:44
Alignment explanation
Indices: 24492477--24492586 Score: 134
Period size: 44 Copynumber: 2.5 Consensus size: 44
24492467 TAATATAACC
* * * * *
24492477 ATAGATAAAATATAAATTGATATAAAATTTTAAATATATTTTAA
1 ATAGTTAATATATAAATTAATATAAAATTTTAAATACATTGTAA
* *
24492521 ATAGTTAATATATAAATTAATCTAAAATTTTAAATGCATTGTAA
1 ATAGTTAATATATAAATTAATATAAAATTTTAAATACATTGTAA
*
24492565 ATAGTT-AT-TATAAATAAATATA
1 ATAGTTAATATATAAATTAATATA
24492587 TTTTGATAAT
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 12 0.21
43 2 0.04
44 43 0.75
ACGTcount: A:0.52, C:0.02, G:0.05, T:0.41
Consensus pattern (44 bp):
ATAGTTAATATATAAATTAATATAAAATTTTAAATACATTGTAA
Found at i:24497968 original size:11 final size:11
Alignment explanation
Indices: 24497938--24497968 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
24497928 TTTATTTTTT
*
24497938 AATATTTTCAA
1 AATATTTTTAA
24497949 AATATTTTTAA
1 AATATTTTTAA
24497960 AATATTTTT
1 AATATTTTT
24497969 TTTTATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (11 bp):
AATATTTTTAA
Found at i:24502530 original size:18 final size:18
Alignment explanation
Indices: 24502507--24502546 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
24502497 CATTATGCTA
24502507 CATTCATTCCATACCA-AC
1 CATTCATT-CATACCATAC
*
24502525 CATTCATTCTTACCATAC
1 CATTCATTCATACCATAC
24502543 CATT
1 CATT
24502547 TCCATCAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.30, C:0.35, G:0.00, T:0.35
Consensus pattern (18 bp):
CATTCATTCATACCATAC
Found at i:24504685 original size:351 final size:351
Alignment explanation
Indices: 24504042--24504742 Score: 1375
Period size: 351 Copynumber: 2.0 Consensus size: 351
24504032 GACTCTTAAC
24504042 AATTTTGCAAATTAGTCCCCGGGCTAACTAGATTAAGCTACAACGACTTCAAAATCATAGAAATC
1 AATTTTGCAAATTAGTCCCCGGGCTAACTAGATTAAGCTACAACGACTTCAAAATCATAGAAATC
24504107 ATTAAAAATAGGATGAAAAATACTCACATGAATAAGGGTAAAGATTGGATGAATTTTTGAGTGTT
66 ATTAAAAATAGGATGAAAAATACTCACATGAATAAGGGTAAAGATTGGATGAATTTTTGAGTGTT
*
24504172 CAACAATGGTGATTTGTTCCTTGAAATTTCGGCTACAAGAGATGGACAAGGTAAATTTGGTTTTT
131 CAACAATGGTGATTTCTTCCTTGAAATTTCGGCTACAAGAGATGGACAAGGTAAATTTGGTTTTT
24504237 GTTTTATTTATTTTGTTATTTAATTACTCAATTACTTATATAACATTACTAAATCCCATTAATGA
196 GTTTTATTTATTTTGTTATTTAATTACTCAATTACTTATATAACATTACTAAATCCCATTAATGA
24504302 TATCCAAACTTGTCCACTAATTAAATTAATGGTCTAATTACCATTTAAGGCCACTCATGTTTCAC
261 TATCCAAACTTGTCCACTAATTAAATTAATGGTCTAATTACCATTTAAGGCCACTCATGTTTCAC
24504367 TTTCATAGCAAATTGACACCTTTTTA
326 TTTCATAGCAAATTGACACCTTTTTA
24504393 AATTTTGCAAATTAGTCCCCGGGCTAACTAGATTAAGCTACAACGACTTCAAAATCATAGAAATC
1 AATTTTGCAAATTAGTCCCCGGGCTAACTAGATTAAGCTACAACGACTTCAAAATCATAGAAATC
*
24504458 ATTAAAAATAGGATGAAAAATACTCACATGCATAAGGGTAAAGATTGGATGAATTTTTGAGTGTT
66 ATTAAAAATAGGATGAAAAATACTCACATGAATAAGGGTAAAGATTGGATGAATTTTTGAGTGTT
24504523 CAACAATGGTGATTTCTTCCTTGAAATTTCGGCTACAAGAGATGGACAAGGTAAATTTGGTTTTT
131 CAACAATGGTGATTTCTTCCTTGAAATTTCGGCTACAAGAGATGGACAAGGTAAATTTGGTTTTT
24504588 GTTTTATTTATTTTGTTATTTAATTACTCAATTACTTATATAACATTACTAAATCCCATTAATGA
196 GTTTTATTTATTTTGTTATTTAATTACTCAATTACTTATATAACATTACTAAATCCCATTAATGA
*
24504653 TGTCCAAACTTGTCCACTAATTAAATTAATGGTCTAATTACCATTTAAGGCCACTCATGTTTCAC
261 TATCCAAACTTGTCCACTAATTAAATTAATGGTCTAATTACCATTTAAGGCCACTCATGTTTCAC
24504718 TTTCATAGCAAATTGACACCTTTTT
326 TTTCATAGCAAATTGACACCTTTTT
24504743 CTAATAGAAC
Statistics
Matches: 347, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
351 347 1.00
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (351 bp):
AATTTTGCAAATTAGTCCCCGGGCTAACTAGATTAAGCTACAACGACTTCAAAATCATAGAAATC
ATTAAAAATAGGATGAAAAATACTCACATGAATAAGGGTAAAGATTGGATGAATTTTTGAGTGTT
CAACAATGGTGATTTCTTCCTTGAAATTTCGGCTACAAGAGATGGACAAGGTAAATTTGGTTTTT
GTTTTATTTATTTTGTTATTTAATTACTCAATTACTTATATAACATTACTAAATCCCATTAATGA
TATCCAAACTTGTCCACTAATTAAATTAATGGTCTAATTACCATTTAAGGCCACTCATGTTTCAC
TTTCATAGCAAATTGACACCTTTTTA
Found at i:24506275 original size:41 final size:43
Alignment explanation
Indices: 24506171--24506276 Score: 144
Period size: 43 Copynumber: 2.5 Consensus size: 43
24506161 AGATGTGATT
* *
24506171 TCGTGTAAGACCATGTATGGGACATTGGCATCGAAGTAAGAGA
1 TCGTGTAAGACCATGTCTGGGACATTGACATCGAAGTAAGAGA
* *
24506214 TCGTGTAAGACCATGTCTGGGACATTGACATCGTA-TATGAG-
1 TCGTGTAAGACCATGTCTGGGACATTGACATCGAAGTAAGAGA
* *
24506255 TCGTATAAGACCCTGTCTGGGA
1 TCGTGTAAGACCATGTCTGGGA
24506277 TAGTGGCACC
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
41 20 0.35
42 5 0.09
43 32 0.56
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (43 bp):
TCGTGTAAGACCATGTCTGGGACATTGACATCGAAGTAAGAGA
Found at i:24510726 original size:16 final size:17
Alignment explanation
Indices: 24510705--24510738 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
24510695 ACATAATTAT
*
24510705 TAGTAA-AAGGTTAATA
1 TAGTAATAAGGTAAATA
24510721 TAGTAATAAGGTAAATA
1 TAGTAATAAGGTAAATA
24510738 T
1 T
24510739 TAACTTTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.50, C:0.00, G:0.18, T:0.32
Consensus pattern (17 bp):
TAGTAATAAGGTAAATA
Found at i:24518442 original size:18 final size:19
Alignment explanation
Indices: 24518410--24518460 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
24518400 TATGAGTGAA
* *
24518410 TAAAAGCAAATTGAGA-GT
1 TAAAAGCATAGTGAGAGGT
*
24518428 TAAGAGCATAGTGAGAGGT
1 TAAAAGCATAGTGAGAGGT
*
24518447 TAAAAGCATTGTGA
1 TAAAAGCATAGTGA
24518461 CTGAAATACA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
18 13 0.48
19 14 0.52
ACGTcount: A:0.43, C:0.06, G:0.27, T:0.24
Consensus pattern (19 bp):
TAAAAGCATAGTGAGAGGT
Found at i:24532399 original size:52 final size:52
Alignment explanation
Indices: 24532325--24532441 Score: 128
Period size: 52 Copynumber: 2.2 Consensus size: 52
24532315 GTACATAGTA
* *
24532325 CTTGCTAAATAATCACCAGCTCAAAGCCTGTTAAAAAATCACCAGCCT-AAAG
1 CTTGCTAAATAAACACCAGCTCAAAGCCTGGTAAAAAATCACC-GCCTCAAAG
* * * * * * * *
24532377 CTTGCTAACTAAACATCGGCTCAAGGTCTGGTAAATAATCACCGGCTCAAGG
1 CTTGCTAAATAAACACCAGCTCAAAGCCTGGTAAAAAATCACCGCCTCAAAG
24532429 CTTGCTAAATAAA
1 CTTGCTAAATAAA
24532442 GTACATCCCG
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
51 3 0.06
52 50 0.94
ACGTcount: A:0.37, C:0.25, G:0.15, T:0.23
Consensus pattern (52 bp):
CTTGCTAAATAAACACCAGCTCAAAGCCTGGTAAAAAATCACCGCCTCAAAG
Found at i:24532437 original size:26 final size:26
Alignment explanation
Indices: 24532325--24532440 Score: 101
Period size: 26 Copynumber: 4.5 Consensus size: 26
24532315 GTACATAGTA
24532325 CTTGCTAAATAATCACCAGCTCAAAG
1 CTTGCTAAATAATCACCAGCTCAAAG
* * *
24532351 CCTGTTAAAAAATCACCAGC-CTAAAG
1 CTTGCTAAATAATCACCAGCTC-AAAG
* * * *
24532377 CTTGCTAACTAAACATCGGCTC-AAG
1 CTTGCTAAATAATCACCAGCTCAAAG
* * * *
24532402 GTCTGGTAAATAATCACCGGCTCAAGG
1 CT-TGCTAAATAATCACCAGCTCAAAG
24532429 CTTGCTAAATAA
1 CTTGCTAAATAA
24532441 AGTACATCCC
Statistics
Matches: 68, Mismatches: 18, Indels: 8
0.72 0.19 0.09
Matches are distributed among these distances:
25 5 0.07
26 59 0.87
27 4 0.06
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.23
Consensus pattern (26 bp):
CTTGCTAAATAATCACCAGCTCAAAG
Found at i:24548042 original size:41 final size:41
Alignment explanation
Indices: 24547985--24548086 Score: 114
Period size: 41 Copynumber: 2.5 Consensus size: 41
24547975 TGATAATCGG
* * * ** *
24547985 GCTTTCAGCTTAGCAGGCTTTATGCCGGTAAATTATTTCAA
1 GCTTTAAGCCTAGCAGGCTTAATGCCGGTAAACCATATCAA
* ** *
24548026 GCTTTACGCCTAGCAGGCTTAATGCCGGTGTACCATATCAG
1 GCTTTAAGCCTAGCAGGCTTAATGCCGGTAAACCATATCAA
24548067 GCTTTAAGCCTAGCAGGCTT
1 GCTTTAAGCCTAGCAGGCTT
24548087 CGTGCCCATG
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.31
Consensus pattern (41 bp):
GCTTTAAGCCTAGCAGGCTTAATGCCGGTAAACCATATCAA
Found at i:24550134 original size:19 final size:19
Alignment explanation
Indices: 24550098--24550139 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
24550088 GTTTTAGTTG
*
24550098 ATTA-AATTAATTATATGT
1 ATTATAATTAATTACATGT
*
24550116 ATTATAATTAATTGCATGT
1 ATTATAATTAATTACATGT
*
24550135 GTTAT
1 ATTAT
24550140 GATTTATAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.38, C:0.02, G:0.10, T:0.50
Consensus pattern (19 bp):
ATTATAATTAATTACATGT
Found at i:24557856 original size:20 final size:20
Alignment explanation
Indices: 24557820--24557857 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
24557810 ACCTACAGTG
*
24557820 GACACACAACCGTGTCACCT
1 GACACACAACCGAGTCACCT
*
24557840 GACACACAACTGAGTCAC
1 GACACACAACCGAGTCAC
24557858 ACACCCATGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.37, G:0.16, T:0.13
Consensus pattern (20 bp):
GACACACAACCGAGTCACCT
Found at i:24566937 original size:12 final size:13
Alignment explanation
Indices: 24566920--24566948 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
24566910 CTCATACATG
24566920 AATAAATAAA-GC
1 AATAAATAAATGC
24566932 AATAAATAAATGC
1 AATAAATAAATGC
24566945 AATA
1 AATA
24566949 GTTATAGCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:24574221 original size:26 final size:25
Alignment explanation
Indices: 24574171--24574221 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 25
24574161 TTATTTTACT
* *
24574171 TTAACTTATTTATTAATTTACTAAA
1 TTAACTTATTAATTAATCTACTAAA
24574196 TTAACCTTATTAATTAA-CTACATAAA
1 TTAA-CTTATTAATTAATCTAC-TAAA
24574222 ACACTTAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.43, C:0.12, G:0.00, T:0.45
Consensus pattern (25 bp):
TTAACTTATTAATTAATCTACTAAA
Found at i:24580618 original size:20 final size:20
Alignment explanation
Indices: 24580593--24580642 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
24580583 TGAGTTATTT
*
24580593 AAGTAAGCAAGTAAGTAAAC
1 AAGTAAGCAAATAAGTAAAC
*
24580613 AAGTAAG-AGAATAAGTAAAG
1 AAGTAAGCA-AATAAGTAAAC
24580633 AAG-AAGCAAA
1 AAGTAAGCAAA
24580643 GACTATGATA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 6 0.23
20 20 0.77
ACGTcount: A:0.60, C:0.06, G:0.22, T:0.12
Consensus pattern (20 bp):
AAGTAAGCAAATAAGTAAAC
Found at i:24587271 original size:50 final size:50
Alignment explanation
Indices: 24587216--24587355 Score: 165
Period size: 50 Copynumber: 2.8 Consensus size: 50
24587206 TATTGAGATT
* * *
24587216 ATGAGAGGTCCCACGTAACACCATGTCTGGGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGAG
* *
24587266 ATGAGAGGTTCCC-CGTAAGACCATGTCTAGGACATGGCATGGGCACCGAT
1 ATGAGAGG-TCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGAG
** * * * *
24587316 ATGAGAACTCTCATGTAAGACCATATCTGGGATATGGCAT
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCAT
24587356 TTGCAGTATA
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
49 3 0.04
50 69 0.91
51 4 0.05
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (50 bp):
ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGAG
Found at i:24590584 original size:41 final size:41
Alignment explanation
Indices: 24590435--24590584 Score: 158
Period size: 41 Copynumber: 3.7 Consensus size: 41
24590425 TCGGGCTCTG
* * ** * *
24590435 TGCCTAGCAGGCTTTATGCC-GATGAATTGTAGCAGACTTTA
1 TGCCTAGCAGGCTTCATGCCAG-TGTATCATATCAGGCTTTA
* *
24590476 TGCCTAGCAGGCTTCATGCCGGTGTACCATATCAGGCTTTA
1 TGCCTAGCAGGCTTCATGCCAGTGTATCATATCAGGCTTTA
* * *
24590517 TGCCTAGCAGGCTTCGTGCCAGTGTATCATATCTGGCTTTG
1 TGCCTAGCAGGCTTCATGCCAGTGTATCATATCAGGCTTTA
* * *
24590558 TGCCTAGAAGGCTTTATGTCAGTGTAT
1 TGCCTAGCAGGCTTCATGCCAGTGTAT
24590585 TTTAATAAGC
Statistics
Matches: 92, Mismatches: 16, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
41 91 0.99
42 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.25, T:0.33
Consensus pattern (41 bp):
TGCCTAGCAGGCTTCATGCCAGTGTATCATATCAGGCTTTA
Found at i:24596166 original size:20 final size:20
Alignment explanation
Indices: 24596141--24596205 Score: 55
Period size: 20 Copynumber: 3.3 Consensus size: 20
24596131 CACATACGTG
24596141 CCCCTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTCGGTA
** * *
24596161 CCCCTGAATGCACATAC---A
1 CCCCTGTTTGTAC-TTCGGTA
24596179 CCCCCTGTTTGTACTTCGGTA
1 -CCCCTGTTTGTACTTCGGTA
24596200 CCCCTG
1 CCCCTG
24596206 AATACACATA
Statistics
Matches: 32, Mismatches: 8, Indels: 10
0.64 0.16 0.20
Matches are distributed among these distances:
18 3 0.09
19 10 0.31
20 16 0.50
21 3 0.09
ACGTcount: A:0.15, C:0.37, G:0.17, T:0.31
Consensus pattern (20 bp):
CCCCTGTTTGTACTTCGGTA
Found at i:24596328 original size:40 final size:40
Alignment explanation
Indices: 24596125--24596324 Score: 258
Period size: 40 Copynumber: 5.0 Consensus size: 40
24596115 TGAATATTAT
*
24596125 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
*
24596165 TGAATGCACATACA-CCCCCTGTTTGTACTTCGGTACCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* * *
24596204 TGAATACACATACACGCCCCTGTTTGTACTTCAGTACCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* * * * *
24596244 TGAATGCACATACGTGCCCCTATTTGTACTTTGATACCAC
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* * * * *
24596284 TAAATGCACATACATGCCCTTGTTTGTTCTTTGGTAACCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
24596324 T
1 T
24596325 AAATCAAATA
Statistics
Matches: 138, Mismatches: 21, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
39 37 0.27
40 101 0.73
ACGTcount: A:0.22, C:0.31, G:0.15, T:0.32
Consensus pattern (40 bp):
TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
Found at i:24599964 original size:50 final size:49
Alignment explanation
Indices: 24599889--24600123 Score: 281
Period size: 50 Copynumber: 4.7 Consensus size: 49
24599879 TAAAGAGGTC
*
24599889 CCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGATGAGAAGT
1 CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAAGT
* * *
24599938 ACCATGTAAGACCATGTATGGGACATGGCGTTGGCACTGAGATGAGAGGT
1 -CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAAGT
* * *
24599988 CTCATGTAAGACCATGTCCGGGACATGGCGTTGGCACTGAGATGAGAGGT
1 C-CATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAAGT
** * * * * *
24600038 CCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCTATATGAGAACT
1 -CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAAGT
* * *
24600088 CTCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 C-CATGTAAGACCATGTCTGGGACATGGCGTTGGCA
24600124 GTACAAGAAA
Statistics
Matches: 161, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
49 2 0.01
50 158 0.98
51 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (49 bp):
CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAAGT
Found at i:24600060 original size:100 final size:100
Alignment explanation
Indices: 24599882--24600123 Score: 315
Period size: 100 Copynumber: 2.4 Consensus size: 100
24599872 ATTTGGGTAA
* * *
24599882 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGATGAGAAGTACCATGTAA
1 AGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAAGTACCACGTAA
* *
24599947 GACCATGTATGGGACATGGCGTTGGCA-CTGAGATG
66 GACCATGTATGGGACATGGCATGGGCACCT-AGATG
* * * * *
24599982 AGAGGTCTCATGTAAGACCATGTCCGGGACATGGCGTTGGCACTGAGATGAGAGGTCCCCCGTAA
1 AGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAAGTACCACGTAA
* *
24600047 GACCATGTCTGGGACATGGCATGGGCACCTATATG
66 GACCATGTATGGGACATGGCATGGGCACCTAGATG
** * * *
24600082 AGAACTCTCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 AGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
24600124 GTACAAGAAA
Statistics
Matches: 123, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
100 121 0.98
101 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.22
Consensus pattern (100 bp):
AGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAAGTACCACGTAA
GACCATGTATGGGACATGGCATGGGCACCTAGATG
Found at i:24606008 original size:16 final size:16
Alignment explanation
Indices: 24605981--24606035 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 16
24605971 AACATAATGC
24605981 AAAATATAATATGAAAT
1 AAAAT-TAATATGAAAT
24605998 AAAATTAATATGAGAA-
1 AAAATTAATATGA-AAT
*
24606014 ATAAACTAATATGAACAT
1 A-AAATTAATATGAA-AT
24606032 AAAA
1 AAAA
24606036 CATGTCTAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
16 10 0.30
17 22 0.67
18 1 0.03
ACGTcount: A:0.64, C:0.04, G:0.07, T:0.25
Consensus pattern (16 bp):
AAAATTAATATGAAAT
Found at i:24607487 original size:3 final size:3
Alignment explanation
Indices: 24607479--24607509 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
24607469 TATGTCGACT
24607479 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
24607510 ATAGAGTTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:24607656 original size:23 final size:22
Alignment explanation
Indices: 24607604--24607668 Score: 60
Period size: 23 Copynumber: 2.8 Consensus size: 22
24607594 GCCTAGATTT
*
24607604 TATATATTTTTTAATTATTAAA
1 TATATATTTTATAATTATTAAA
*
24607626 TAAAATATTATTATAATT-TTAAAA
1 T-ATATATT-TTATAATTATT-AAA
24607650 TATATATTTATACTAATTA
1 TATATATTT-TA-TAATTA
24607669 AATGTGGATT
Statistics
Matches: 34, Mismatches: 3, Indels: 9
0.74 0.07 0.20
Matches are distributed among these distances:
22 2 0.06
23 16 0.47
24 16 0.47
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (22 bp):
TATATATTTTATAATTATTAAA
Found at i:24609770 original size:10 final size:10
Alignment explanation
Indices: 24609732--24609787 Score: 51
Period size: 10 Copynumber: 5.4 Consensus size: 10
24609722 AAAAAATCAT
*
24609732 AAAAGTATTA
1 AAAATTATTA
*
24609742 AAAATTGA-GA
1 AAAATT-ATTA
24609752 AATAATTATTA
1 AA-AATTATTA
24609763 AAAATTATTA
1 AAAATTATTA
*
24609773 AGAAATTAATA
1 A-AAATTATTA
24609784 AAAA
1 AAAA
24609788 GAGTAAAATT
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
10 21 0.55
11 17 0.45
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.30
Consensus pattern (10 bp):
AAAATTATTA
Found at i:24609931 original size:23 final size:23
Alignment explanation
Indices: 24609908--24609950 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
24609898 AAAATCATTA
24609908 AAATTGTA-AAAAAAAGTTAATT
1 AAATTGTATAAAAAAAGTTAATT
* *
24609930 AAATTTTATAAAAAATGTTAA
1 AAATTGTATAAAAAAAGTTAA
24609951 AATTTATTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.35
Consensus pattern (23 bp):
AAATTGTATAAAAAAAGTTAATT
Found at i:24609942 original size:22 final size:23
Alignment explanation
Indices: 24609908--24609950 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
24609898 AAAATCATTA
24609908 AAATTGTAAAAAAAA-GTTAATT
1 AAATTGTAAAAAAAATGTTAATT
* *
24609930 AAATTTTATAAAAAATGTTAA
1 AAATTGTAAAAAAAATGTTAA
24609951 AATTTATTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.35
Consensus pattern (23 bp):
AAATTGTAAAAAAAATGTTAATT
Found at i:24611111 original size:63 final size:63
Alignment explanation
Indices: 24611012--24611140 Score: 258
Period size: 63 Copynumber: 2.0 Consensus size: 63
24611002 CGCTGACAAA
24611012 CAGTTTGTCACATCACGATGCCAAGCTAATCCTCATGTAGCGTTGTAATACCCAATTTATGCC
1 CAGTTTGTCACATCACGATGCCAAGCTAATCCTCATGTAGCGTTGTAATACCCAATTTATGCC
24611075 CAGTTTGTCACATCACGATGCCAAGCTAATCCTCATGTAGCGTTGTAATACCCAATTTATGCC
1 CAGTTTGTCACATCACGATGCCAAGCTAATCCTCATGTAGCGTTGTAATACCCAATTTATGCC
24611138 CAG
1 CAG
24611141 CCCACATACA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 66 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (63 bp):
CAGTTTGTCACATCACGATGCCAAGCTAATCCTCATGTAGCGTTGTAATACCCAATTTATGCC
Found at i:24615575 original size:31 final size:31
Alignment explanation
Indices: 24615539--24615600 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
24615529 AGATAATTTT
24615539 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
24615570 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
24615601 TAATTTGCGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (31 bp):
AAAGAGTTTTATTAGGATTCAATTACTCTTG
Found at i:24620891 original size:31 final size:31
Alignment explanation
Indices: 24620855--24620916 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
24620845 AGATAATTTT
24620855 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
24620886 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
24620917 TAATTTGCGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (31 bp):
AAAGAGTTTTATTAGGATTCAATTACTCTTG
Found at i:24624231 original size:12 final size:12
Alignment explanation
Indices: 24624216--24624274 Score: 57
Period size: 12 Copynumber: 4.9 Consensus size: 12
24624206 AAAGGGAAGA
24624216 AAAATCAAAAAC
1 AAAATCAAAAAC
*
24624228 AAAATC-GAAAC
1 AAAATCAAAAAC
* *
24624239 AAAAAGCAAAAAG
1 -AAAATCAAAAAC
*
24624252 AAAATCAAAATC
1 AAAATCAAAAAC
*
24624264 AAAGTCAAAAA
1 AAAATCAAAAA
24624275 ATGAAAATGA
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
11 4 0.11
12 29 0.81
13 3 0.08
ACGTcount: A:0.71, C:0.14, G:0.07, T:0.08
Consensus pattern (12 bp):
AAAATCAAAAAC
Found at i:24624242 original size:24 final size:25
Alignment explanation
Indices: 24624215--24624274 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 25
24624205 AAAAGGGAAG
*
24624215 AAAAATCAAAAACAAAATCGAAA-C
1 AAAAATCAAAAACAAAATCAAAATC
* *
24624239 AAAAAGCAAAAAGAAAATCAAAATC
1 AAAAATCAAAAACAAAATCAAAATC
*
24624264 -AAAGTCAAAAA
1 AAAAATCAAAAA
24624275 ATGAAAATGA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
24 29 0.97
25 1 0.03
ACGTcount: A:0.72, C:0.13, G:0.07, T:0.08
Consensus pattern (25 bp):
AAAAATCAAAAACAAAATCAAAATC
Found at i:24625209 original size:7 final size:7
Alignment explanation
Indices: 24625199--24625231 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
24625189 TAAAAAAATG
24625199 TGAAAAA
1 TGAAAAA
24625206 TG-AAAA
1 TGAAAAA
24625212 TG-AAAA
1 TGAAAAA
24625218 TGAAAAA
1 TGAAAAA
24625225 TGAAAAA
1 TGAAAAA
24625232 ATGGAAAAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 12 0.48
7 13 0.52
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (7 bp):
TGAAAAA
Found at i:24626907 original size:132 final size:132
Alignment explanation
Indices: 24626670--24627050 Score: 586
Period size: 132 Copynumber: 2.9 Consensus size: 132
24626660 TTGATGGCGG
24626670 ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTAAAGCCAGTAATTCTATCTCCCTGGTTGGCA
1 ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTAAAGCCAGTAATTCTATCTCCCTGGTTGGCA
*
24626735 GTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATCGC
66 GTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCACATCGAAGATCGC
24626800 GA
131 GA
* * * *
24626802 ATTTTACCTCCCTATGGTTACAGTGGAGTACGTTGAAGCTAGTAATTCTATCTCCCTGGTTGGCA
1 ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTAAAGCCAGTAATTCTATCTCCCTGGTTGGCA
* *
24626867 GCT-GAATAGATTGAAGATTACAGGTCTTATCTCCCTAAGCAGTAGTGGAGCACATCGAAGATGG
66 G-TGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCACATCGAAGATCG
* *
24626931 TGG
130 CGA
* * ** *
24626934 ATTTTGCCTCCCTGTGGTTACAGTGGAGTACATTAAAGCCAGTAATTTTATCTTTCTAGTTGGCA
1 ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTAAAGCCAGTAATTCTATCTCCCTGGTTGGCA
* *
24626999 GTGGAATACATTGGAA-ATTACAGATCTTATCTCCCTAAGCAGTAGCGGAGCA
66 GTGGAATAGATT-GAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
24627051 AATCAAAAAC
Statistics
Matches: 225, Mismatches: 21, Indels: 6
0.89 0.08 0.02
Matches are distributed among these distances:
131 1 0.00
132 220 0.98
133 4 0.02
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.30
Consensus pattern (132 bp):
ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTAAAGCCAGTAATTCTATCTCCCTGGTTGGCA
GTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCACATCGAAGATCGC
GA
Found at i:24627144 original size:128 final size:128
Alignment explanation
Indices: 24626996--24628266 Score: 1864
Period size: 128 Copynumber: 9.9 Consensus size: 128
24626986 TTTCTAGTTG
** * * * *
24626996 GCAGTGGAATACATTGGAAATTACAGATCTTATCTCCCTAAGCAGTAGCGGAGCAAATCAAAAAC
1 GCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGAC
* * * *
24627061 GAG-GAATCTTATCTTC-AGAAGTAGGGAAGCAGATTTAAGCCGCTAGTCCTATCTCCCTAGTTA
66 G-GCGAATCTTATCTTCAAG-AGTAGGGAAGCAGATTTAAGCCACAAGTCCTATCTCCCTGGTCA
* * *
24627124 GCAGTAGAATAGGTTGGAAATTACAGATCTTATCTCCCTAAGCAGTAGCAGAGCAGATCGAAGAC
1 GCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGAC
* * * * * *
24627189 GACGAATCTTATCTTCAGGAGTAGGGAAGCAGATTTAAGCCGCTAGTCCTATCTCTCGGGTCA
66 GGCGAATCTTATCTTCAAGAGTAGGGAAGCAGATTTAAGCCACAAGTCCTATCTCCCTGGTCA
* *
24627252 ACAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGAT
1 GCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGAC
* *
24627317 GGCGAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCCACAAGTCCTATCTCCTTGGTCA
66 GGCGAATCTTATCTTCAAGAGTAGGGAAGCAGATTTAAGCCACAAGTCCTATCTCCCTGGTCA
* * * *
24627380 GCAGTGGAATATGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCCGAGTAGATTGAAGAC
1 GCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGAC
* *
24627445 GGTGAATCTTATCTTCAAGAGTAGGGAAGCAGATTTAAGCCACAAGTCCTATCTCTCTGGTCA
66 GGCGAATCTTATCTTCAAGAGTAGGGAAGCAGATTTAAGCCACAAGTCCTATCTCCCTGGTCA
* * * *
24627508 GTAGTAGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAATAT
1 GCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGAC
* *
24627573 GGCGAATCTTATCTTCAAGAGTAAGGAAGCAGATTTAAGCCACAAGTCCTATCTTCCTGGTCA
66 GGCGAATCTTATCTTCAAGAGTAGGGAAGCAGATTTAAGCCACAAGTCCTATCTCCCTGGTCA
* * * * *
24627636 GTAGTGGAATAGGTTAGAAATTAAAGATCTTGGCTCCCTAAGCAGTAGCAGAGCAGATCGAAGAC
1 GCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGAC
* * *
24627701 GGCGAATCTTATCTTCAAGAGTAAGGAAACAGATTTAAGCCACAAGTCTTATCTCCCTGGTCA
66 GGCGAATCTTATCTTCAAGAGTAGGGAAGCAGATTTAAGCCACAAGTCCTATCTCCCTGGTCA
*
24627764 GCAGTGGAATTGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGAC
1 GCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGAC
*
24627829 GGCGAATCTTATCTTCAAGAGTAGGGAAGCAGATTTAAGCCACAAGTCCTATCTCTCTGGTCA
66 GGCGAATCTTATCTTCAAGAGTAGGGAAGCAGATTTAAGCCACAAGTCCTATCTCCCTGGTCA
* * * * *
24627892 ACAGTGGAATAGATTGGAAATTATAGATCTTGTCTCCCTAAGTAGTAGTGGAGCAGATCGAAGAC
1 GCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGAC
** * * *
24627957 GGTAAATCTTATTTTCAAGAGTAGAGAAGCAGATTTAAGCCACAAGTCCTATCTCCTTGGTCA
66 GGCGAATCTTATCTTCAAGAGTAGGGAAGCAGATTTAAGCCACAAGTCCTATCTCCCTGGTCA
* * * *
24628020 GCAGTGGAATAGGTTGGAAATTATAGATCTTATCTCCCTAAGTAGTAGCGGAGCAGATTGAAGAC
1 GCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGAC
* * *
24628085 GGCGAATCTTATCTTCAGGAGTAGGGAAGCAGATTTAAGCCGCTAGTCCTATCTCCCTGGTCA
66 GGCGAATCTTATCTTCAAGAGTAGGGAAGCAGATTTAAGCCACAAGTCCTATCTCCCTGGTCA
* * * * *
24628148 GTAGTGGAATAGGTTGGAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCATATCGAACAC
1 GCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGAC
* * * *
24628213 GGCGAATCTTATCTTCAGGAGTAGGGAAGTAGATTGAAGCCACAAAT-CTATCTC
66 GGCGAATCTTATCTTCAAGAGTAGGGAAGCAGATTTAAGCCACAAGTCCTATCTC
24628267 TTCGACGTTA
Statistics
Matches: 1036, Mismatches: 105, Indels: 5
0.90 0.09 0.00
Matches are distributed among these distances:
127 7 0.01
128 1028 0.99
129 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (128 bp):
GCAGTGGAATAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGAC
GGCGAATCTTATCTTCAAGAGTAGGGAAGCAGATTTAAGCCACAAGTCCTATCTCCCTGGTCA
Found at i:24634038 original size:37 final size:37
Alignment explanation
Indices: 24633988--24634059 Score: 144
Period size: 37 Copynumber: 1.9 Consensus size: 37
24633978 TCTTTCAATC
24633988 GGTTTGCTCATTTATGATTAGACTAAGGACATGTTTA
1 GGTTTGCTCATTTATGATTAGACTAAGGACATGTTTA
24634025 GGTTTGCTCATTTATGATTAGACTAAGGACATGTT
1 GGTTTGCTCATTTATGATTAGACTAAGGACATGTT
24634060 AAGGCATTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.26, C:0.11, G:0.22, T:0.40
Consensus pattern (37 bp):
GGTTTGCTCATTTATGATTAGACTAAGGACATGTTTA
Found at i:24638208 original size:17 final size:17
Alignment explanation
Indices: 24638180--24638230 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
24638170 TTCCTAATTG
*
24638180 GTTTATTGATTTAGTTT
1 GTTTATTTATTTAGTTT
* *
24638197 GTTTGTTTATTT-TTCTT
1 GTTTATTTATTTAGT-TT
24638214 GTTTATTTATTTTAGTT
1 GTTTATTTA-TTTAGTT
24638231 ATTTAATTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 5
0.72 0.14 0.14
Matches are distributed among these distances:
16 1 0.04
17 20 0.77
18 4 0.15
19 1 0.04
ACGTcount: A:0.14, C:0.02, G:0.14, T:0.71
Consensus pattern (17 bp):
GTTTATTTATTTAGTTT
Found at i:24652904 original size:12 final size:12
Alignment explanation
Indices: 24652887--24652925 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
24652877 CACCATAGTA
24652887 TTATTTTTCTTT
1 TTATTTTTCTTT
24652899 TTATTTTTCTTT
1 TTATTTTTCTTT
* *
24652911 CTCATCTTTCTTT
1 -TTATTTTTCTTT
24652924 TT
1 TT
24652926 TCTATCTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
12 13 0.57
13 10 0.43
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.77
Consensus pattern (12 bp):
TTATTTTTCTTT
Found at i:24656184 original size:56 final size:51
Alignment explanation
Indices: 24655975--24656222 Score: 247
Period size: 50 Copynumber: 4.8 Consensus size: 51
24655965 TGATAATAAC
* * * *
24655975 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA--TGT--TTCTTG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATACTCG
* * **
24656022 TACTGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATA-TCG
1 -A-TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATACTCG
* * * * *
24656074 GTGCCTATGTCATGTCCCAGACATGGTCTTAAAGGGGACCTCTCAT-CTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATACTCG
24656124 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACTTCAATG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-AC-TC---G
* * *
24656180 ATGCCAATACCATGTCCTAGACATGGTCTTACATGGGATCTCT
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
24656223 TTACCCAAAT
Statistics
Matches: 165, Mismatches: 23, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
48 1 0.01
49 34 0.21
50 81 0.49
51 2 0.01
52 3 0.02
53 3 0.02
56 41 0.25
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (51 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATACTCG
Found at i:24662602 original size:21 final size:21
Alignment explanation
Indices: 24662567--24662608 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
24662557 GATACATGGT
**
24662567 AAAAGGTATGTATACTGTTTG
1 AAAAGGTATCAATACTGTTTG
*
24662588 AAAAGGTATCAATACTTTTTG
1 AAAAGGTATCAATACTGTTTG
24662609 TCATTGATTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.36, C:0.07, G:0.19, T:0.38
Consensus pattern (21 bp):
AAAAGGTATCAATACTGTTTG
Found at i:24662758 original size:20 final size:19
Alignment explanation
Indices: 24662735--24662792 Score: 55
Period size: 19 Copynumber: 2.9 Consensus size: 19
24662725 ATTTGTTTTA
24662735 AAAATTTTTTAACTTGATTG
1 AAAA-TTTTTAACTTGATTG
* **
24662755 AAAATGTTTAACTCAATTG
1 AAAATTTTTAACTTGATTG
24662774 AAACCA-TTTTAACTTGATT
1 AAA--ATTTTTAACTTGATT
24662793 TTATCATTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
19 15 0.50
20 14 0.47
21 1 0.03
ACGTcount: A:0.38, C:0.10, G:0.09, T:0.43
Consensus pattern (19 bp):
AAAATTTTTAACTTGATTG
Found at i:24662766 original size:19 final size:19
Alignment explanation
Indices: 24662741--24662792 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
24662731 TTTAAAAATT
24662741 TTTTAACTTGATTGAAA-A
1 TTTTAACTTGATTGAAACA
**
24662759 TGTTTAACTCAATTGAAACCA
1 T-TTTAACTTGATTGAAA-CA
24662780 TTTTAACTTGATT
1 TTTTAACTTGATT
24662793 TTATCATTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
18 1 0.04
19 14 0.52
20 10 0.37
21 2 0.07
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.44
Consensus pattern (19 bp):
TTTTAACTTGATTGAAACA
Found at i:24662845 original size:22 final size:25
Alignment explanation
Indices: 24662817--24662866 Score: 70
Period size: 22 Copynumber: 2.1 Consensus size: 25
24662807 ATTTTGTTCA
24662817 ATTTTAACTT-TTAT-TCAAAA-AT
1 ATTTTAACTTGTTATATCAAAACAT
*
24662839 ATTTTAATTTGTTATATCAAAACAT
1 ATTTTAACTTGTTATATCAAAACAT
24662864 ATT
1 ATT
24662867 ATCAAATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 9 0.38
23 4 0.17
24 6 0.25
25 5 0.21
ACGTcount: A:0.40, C:0.08, G:0.02, T:0.50
Consensus pattern (25 bp):
ATTTTAACTTGTTATATCAAAACAT
Found at i:24669369 original size:48 final size:48
Alignment explanation
Indices: 24669259--24669369 Score: 150
Period size: 48 Copynumber: 2.3 Consensus size: 48
24669249 TGATTTGTAC
** * * * *
24669259 AAAAATGGACAATAATTAAGCACCAATTTGGACAGCATTAATATGCTC
1 AAAAATGGACAGCATTTAAGCACCAATTTGGACAACATTAATATACTA
*
24669307 AAAAATGGACAGCATTTAAGCACTAATTTGGACAACATTAATATACTA
1 AAAAATGGACAGCATTTAAGCACCAATTTGGACAACATTAATATACTA
*
24669355 AAAAATGGATAGCAT
1 AAAAATGGACAGCAT
24669370 CTTATCATCA
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 55 1.00
ACGTcount: A:0.46, C:0.14, G:0.14, T:0.25
Consensus pattern (48 bp):
AAAAATGGACAGCATTTAAGCACCAATTTGGACAACATTAATATACTA
Found at i:24674240 original size:40 final size:40
Alignment explanation
Indices: 24674196--24674320 Score: 171
Period size: 40 Copynumber: 3.1 Consensus size: 40
24674186 TTATTGTACG
*
24674196 AATGCACATACATGCCCCTGTTTGTACTTCGATACCCCTA
1 AATGCACATACATGCCCCTGTTTGTACTTCGGTACCCCTA
* * * *
24674236 AATGCACATACGTCCCCCTATTT-TGACTTCGGTACCCCAA
1 AATGCACATACATGCCCCTGTTTGT-ACTTCGGTACCCCTA
* *
24674276 AATACACATACATGCCCCTGTTTGTACTTCGGTACCCCTG
1 AATGCACATACATGCCCCTGTTTGTACTTCGGTACCCCTA
24674316 AATGC
1 AATGC
24674321 GCTTTCGTGC
Statistics
Matches: 71, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 69 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.33, G:0.14, T:0.29
Consensus pattern (40 bp):
AATGCACATACATGCCCCTGTTTGTACTTCGGTACCCCTA
Found at i:24674332 original size:40 final size:40
Alignment explanation
Indices: 24674196--24674337 Score: 169
Period size: 40 Copynumber: 3.5 Consensus size: 40
24674186 TTATTGTACG
* *
24674196 AATGCACATACATGCCCCTGTTTGTACTTCGATACCCCTA
1 AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTA
* * *
24674236 AATGCACATACGTCCCCCTATTT-TGACTTCGGTACCCCAA
1 AATGCACATACGTGCCCCTGTTTGT-ACTTCGGTACCCCTA
* * *
24674276 AATACACATACATGCCCCTGTTTGTACTTCGGTACCCCTG
1 AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTA
* * *
24674316 AATGCGCTTTCGTGCCCCTGTT
1 AATGCACATACGTGCCCCTGTT
24674338 AAAAATCTGG
Statistics
Matches: 84, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 82 0.98
41 1 0.01
ACGTcount: A:0.22, C:0.33, G:0.15, T:0.30
Consensus pattern (40 bp):
AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTA
Found at i:24675009 original size:15 final size:15
Alignment explanation
Indices: 24674960--24675010 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
24674950 TGATACATGG
24674960 GTGTGTAACTCAGCC
1 GTGTGTAACTCAGCC
*
24674975 GTGTG-AGACACACTGCC
1 GTGTGTA-ACTCA--GCC
24674992 GTGTGTAACTCAGCC
1 GTGTGTAACTCAGCC
24675007 GTGT
1 GTGT
24675011 TAGACACATG
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
14 1 0.03
15 16 0.53
17 12 0.40
18 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.25
Consensus pattern (15 bp):
GTGTGTAACTCAGCC
Found at i:24675028 original size:32 final size:32
Alignment explanation
Indices: 24674959--24675028 Score: 106
Period size: 32 Copynumber: 2.2 Consensus size: 32
24674949 CTGATACATG
24674959 GGTGTGTAACTCAGCCGTGTGAGACACACTGC
1 GGTGTGTAACTCAGCCGTGTGAGACACACTGC
* *
24674991 CGTGTGTAACTCAGCCGTGTTAGACACA-TGGC
1 GGTGTGTAACTCAGCCGTGTGAGACACACT-GC
24675023 GGTGTG
1 GGTGTG
24675029 CCATCTTAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
31 1 0.03
32 33 0.97
ACGTcount: A:0.20, C:0.23, G:0.33, T:0.24
Consensus pattern (32 bp):
GGTGTGTAACTCAGCCGTGTGAGACACACTGC
Found at i:24680283 original size:37 final size:38
Alignment explanation
Indices: 24680220--24680332 Score: 94
Period size: 37 Copynumber: 3.1 Consensus size: 38
24680210 ATTCCAAAAA
*
24680220 TAATA-TTATTTTAATAGTTTAATATTAAATTAA-ATT
1 TAATATTTATCTTAATAGTTTAATATTAAATTAATATT
* *
24680256 TAATATTTATCTTAATAGTATT-TTATTAAGTTAATATT
1 TAATATTTATCTTAATAGT-TTAATATTAAATTAATATT
* * * *
24680294 AAAT-TGATTATCTTAATA-TTAAAT-TTAATTTAATGTT
1 TAATAT--TTATCTTAATAGTTTAATATTAAATTAATATT
24680331 TA
1 TA
24680333 TCTTGTAAAT
Statistics
Matches: 62, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
36 5 0.08
37 36 0.58
38 10 0.16
39 11 0.18
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (38 bp):
TAATATTTATCTTAATAGTTTAATATTAAATTAATATT
Found at i:24684340 original size:22 final size:21
Alignment explanation
Indices: 24684311--24684354 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
24684301 CGTTTTATTC
*
24684311 AATTTAAACTAAAAACTAAAT
1 AATTTAAAATAAAAACTAAAT
* *
24684332 AATTCTAAAATAAACATTAAAT
1 AATT-TAAAATAAAAACTAAAT
24684354 A
1 A
24684355 CGTAAAACTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (21 bp):
AATTTAAAATAAAAACTAAAT
Found at i:24685324 original size:9 final size:10
Alignment explanation
Indices: 24685303--24685357 Score: 103
Period size: 10 Copynumber: 5.6 Consensus size: 10
24685293 CATTCAACTG
24685303 AAAATTTTAA
1 AAAATTTTAA
24685313 AAAATTTT-A
1 AAAATTTTAA
24685322 AAAATTTTAA
1 AAAATTTTAA
24685332 AAAATTTTAA
1 AAAATTTTAA
24685342 AAAATTTTAA
1 AAAATTTTAA
24685352 AAAATT
1 AAAATT
24685358 GATTTTATCC
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
9 9 0.20
10 35 0.80
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (10 bp):
AAAATTTTAA
Found at i:24685327 original size:19 final size:20
Alignment explanation
Indices: 24685303--24685357 Score: 103
Period size: 19 Copynumber: 2.8 Consensus size: 20
24685293 CATTCAACTG
24685303 AAAATTTTAAAAAATTTT-A
1 AAAATTTTAAAAAATTTTAA
24685322 AAAATTTTAAAAAATTTTAA
1 AAAATTTTAAAAAATTTTAA
24685342 AAAATTTTAAAAAATT
1 AAAATTTTAAAAAATT
24685358 GATTTTATCC
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 18 0.51
20 17 0.49
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
AAAATTTTAAAAAATTTTAA
Found at i:24688690 original size:14 final size:14
Alignment explanation
Indices: 24688671--24688698 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
24688661 CGGGTTTTAC
24688671 TTTGAGATAAGTGA
1 TTTGAGATAAGTGA
24688685 TTTGAGATAAGTGA
1 TTTGAGATAAGTGA
24688699 ACCGTAACCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.29, T:0.36
Consensus pattern (14 bp):
TTTGAGATAAGTGA
Found at i:24690212 original size:253 final size:248
Alignment explanation
Indices: 24689770--24690273 Score: 715
Period size: 253 Copynumber: 2.0 Consensus size: 248
24689760 ATATCAAGTA
* * * * * * *
24689770 TGCTATGCTAGAAATTGGGCTTTCCTTCTTGGCCGCAGAATAGACATTGCCTTTTAGCTGTCAAA
1 TGCTATGCCAAAAATAGGGCTTTCCTCCTTGGCCACAGAATAGACACTGCCTTTTAGCCGTCAAA
*
24689835 CCATTAATTTTGAATACTTTCTTAAATCCAAATTAGTACCCTAGTCTAAGTTTAATTTTTGTTGT
66 CCATTAATTCTGAATACTTTCTTAAATCCAAATTAGTACCCTAGTCTAAGTTTAATTTTTGTTGT
* * * * *
24689900 GCAGGATTCATTGTATGGCAAGCACAGAGTATACTTTTAAACTTACGGGAGATTTTCTTTTACAG
131 GCAGGATCCATTGTATGGCAAGCACAGAGCATAATTTTAAACTTACGAGAGATTTTCTTTTAAAG
* * *
24689965 ATTTG-CTATGTTGATCAAAAAGAGAGCAGGAAATATTTAGAAAGAC-GTTTTT
196 A-TTGACTATGTTGATCAAAAAGAGAACAAGAAACATTTAGAAAGACAGTTTTT
*
24690017 TGCTATGCCAAAAATAGGGCTTTCCTCCTTGGCCACAGAATAGGCACTGCCTTTTAGCCGTCAAA
1 TGCTATGCCAAAAATAGGGCTTTCCTCCTTGGCCACAGAATAGACACTGCCTTTTAGCCGTCAAA
*
24690082 CCATTAATTCTGAATATTTTCTTAAATCCAATATTAATTAGTATCCCTAGTCTAAGTTTAATTTT
66 CCATTAATTCTGAATACTTTCTTAAATCC---A--AATTAGTA-CCCTAGTCTAAGTTTAATTTT
* *
24690147 TGTTGTGTAGGATCCATTGTATGGTAAGCACAGAGCATAATTTTAAACTTACGAGAGATTTTCTT
125 TGTTGTGCAGGATCCATTGTATGGCAAGCACAGAGCATAATTTTAAACTTACGAGAGATTTTCTT
* *
24690212 TTAAAGATTGACCTATGTTGATTAGAAAGAGAACAAGAAACATTTAGAAAGACATGTTTTT
190 TTAAAGATTGA-CTATGTTGATCAAAAAGAGAACAAGAAACATTTAGAAAGACA-GTTTTT
24690273 T
1 T
24690274 AAAACACCCT
Statistics
Matches: 225, Mismatches: 22, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
247 84 0.37
250 1 0.00
252 11 0.05
253 86 0.38
254 36 0.16
256 7 0.03
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (248 bp):
TGCTATGCCAAAAATAGGGCTTTCCTCCTTGGCCACAGAATAGACACTGCCTTTTAGCCGTCAAA
CCATTAATTCTGAATACTTTCTTAAATCCAAATTAGTACCCTAGTCTAAGTTTAATTTTTGTTGT
GCAGGATCCATTGTATGGCAAGCACAGAGCATAATTTTAAACTTACGAGAGATTTTCTTTTAAAG
ATTGACTATGTTGATCAAAAAGAGAACAAGAAACATTTAGAAAGACAGTTTTT
Found at i:24693772 original size:18 final size:18
Alignment explanation
Indices: 24693749--24693793 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 18
24693739 GATTTAAAAA
24693749 TCTTTTTTCTGAAATGCT
1 TCTTTTTTCTGAAATGCT
*
24693767 TC-TTTTTCTGAAATGTT
1 TCTTTTTTCTGAAATGCT
*
24693784 TTTTTTTTCT
1 TCTTTTTTCT
24693794 AGTGGGCCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 15 0.62
18 9 0.38
ACGTcount: A:0.13, C:0.13, G:0.09, T:0.64
Consensus pattern (18 bp):
TCTTTTTTCTGAAATGCT
Found at i:24697741 original size:16 final size:15
Alignment explanation
Indices: 24697717--24697751 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
24697707 TACTCTTTTG
*
24697717 AAATTTAAAATATATA
1 AAATCTAAAATAT-TA
24697733 AAATCTAAAATATTA
1 AAATCTAAAATATTA
24697748 AAAT
1 AAAT
24697752 TTTATAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (15 bp):
AAATCTAAAATATTA
Found at i:24697938 original size:17 final size:17
Alignment explanation
Indices: 24697916--24697974 Score: 66
Period size: 17 Copynumber: 3.5 Consensus size: 17
24697906 TAAATTAAAA
24697916 TTTATAAACTTTGATAT
1 TTTATAAACTTTGATAT
* *
24697933 TTTATAAAATCTGATAT
1 TTTATAAACTTTGATAT
* *
24697950 TTTAT-ACCTTTTTATAT
1 TTTATAAAC-TTTGATAT
24697967 TTTATAAA
1 TTTATAAA
24697975 AATTATATCT
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
16 1 0.03
17 31 0.94
18 1 0.03
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.54
Consensus pattern (17 bp):
TTTATAAACTTTGATAT
Found at i:24698073 original size:16 final size:16
Alignment explanation
Indices: 24698052--24698084 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
24698042 ATTTGATGCG
*
24698052 AAATAATATATTTTAT
1 AAATAAAATATTTTAT
24698068 AAATAAAATATTTTAT
1 AAATAAAATATTTTAT
24698084 A
1 A
24698085 TGTTTTTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
AAATAAAATATTTTAT
Found at i:24698292 original size:24 final size:21
Alignment explanation
Indices: 24698258--24698304 Score: 58
Period size: 24 Copynumber: 2.1 Consensus size: 21
24698248 ATATTTTTAA
24698258 TATTTTATAAACTTATAAACATTT
1 TATTTTATAAA-TTA-AAA-ATTT
*
24698282 TATTTTTTAAATTAAAAATTT
1 TATTTTATAAATTAAAAATTT
24698303 TA
1 TA
24698305 AAATAATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 6 0.27
22 3 0.14
23 3 0.14
24 10 0.45
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (21 bp):
TATTTTATAAATTAAAAATTT
Done.