Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60343961
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 596159 characters in sequence are not A, C, G, or T
File 85 of 204
Found at i:26249338 original size:54 final size:54
Alignment explanation
Indices: 26249225--26249339 Score: 144
Period size: 54 Copynumber: 2.1 Consensus size: 54
26249215 TCTAAATGAA
* * * *
26249225 AGCCTTTGTGGCTATCTCTGAAGGAAACCTTTGTGGCGATCTCTGTTAAAAGTG
1 AGCCTTTGTGGCTATCTCTGAAGGAAACCATGGTGGCAATCTCTGATAAAAGTG
* *
26249279 AGCCTTTGTGGCTATCTCTGAATGGAAGCCATGGTGGCAATCTCT-ATCAAAG-G
1 AGCCTTTGTGGCTATCTCTGAA-GGAAACCATGGTGGCAATCTCTGATAAAAGTG
26249332 ACGCCTTT
1 A-GCCTTT
26249340 CTGGTGAGAC
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
53 2 0.04
54 33 0.62
55 18 0.34
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (54 bp):
AGCCTTTGTGGCTATCTCTGAAGGAAACCATGGTGGCAATCTCTGATAAAAGTG
Found at i:26262030 original size:51 final size:50
Alignment explanation
Indices: 26261961--26262071 Score: 152
Period size: 51 Copynumber: 2.2 Consensus size: 50
26261951 TGCATTCGAG
* * * * *
26261961 CTGCTAGAAATAGAATATTATGGTCGAGCCACTAGATAATTTGTAGAT-ATA
1 CTGCCAGATATAGAATATTATGGTCAAGCCACCAGA-AATTTGCAG-TCATA
26262012 CTGCCAGATATAGAATATTATGGTCAAGCCACCAGAAATTTGCAGTCATA
1 CTGCCAGATATAGAATATTATGGTCAAGCCACCAGAAATTTGCAGTCATA
26262062 CTGCCAGATA
1 CTGCCAGATA
26262072 CTTTCTCCGT
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
49 1 0.02
50 21 0.39
51 32 0.59
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (50 bp):
CTGCCAGATATAGAATATTATGGTCAAGCCACCAGAAATTTGCAGTCATA
Found at i:26262244 original size:35 final size:36
Alignment explanation
Indices: 26262183--26262254 Score: 92
Period size: 35 Copynumber: 2.0 Consensus size: 36
26262173 TTTATCACAG
* *
26262183 TGGCATGCTCAACATGTGAATTAGAATA-AAAAATA
1 TGGCATGCTCAACATGCGAATCAGAATATAAAAATA
* * *
26262218 TGGCATGCTTAACATGCGAGTCAGAATATCAAAATA
1 TGGCATGCTCAACATGCGAATCAGAATATAAAAATA
26262254 T
1 T
26262255 TATCATGTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
35 24 0.77
36 7 0.23
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.26
Consensus pattern (36 bp):
TGGCATGCTCAACATGCGAATCAGAATATAAAAATA
Found at i:26263914 original size:40 final size:40
Alignment explanation
Indices: 26263877--26264062 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
26263867 GCTACTCGTT
* *
26263877 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
26263917 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
26263957 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
26263997 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACCTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AACTCGCA
26264038 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26264063 CATCATTCAA
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.02
40 113 0.87
41 14 0.11
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:26271395 original size:51 final size:50
Alignment explanation
Indices: 26271326--26271436 Score: 152
Period size: 51 Copynumber: 2.2 Consensus size: 50
26271316 TGCATTCGAG
* * * * *
26271326 CTGCTAGAAATAGAATATTATGGTCGAGCCACTAGATAATTTGTAGAT-ATA
1 CTGCCAGATATAGAATATTATGGTCAAGCCACCAGA-AATTTGCAG-TCATA
26271377 CTGCCAGATATAGAATATTATGGTCAAGCCACCAGAAATTTGCAGTCATA
1 CTGCCAGATATAGAATATTATGGTCAAGCCACCAGAAATTTGCAGTCATA
26271427 CTGCCAGATA
1 CTGCCAGATA
26271437 CTTTCTCCGT
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
49 1 0.02
50 21 0.39
51 32 0.59
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (50 bp):
CTGCCAGATATAGAATATTATGGTCAAGCCACCAGAAATTTGCAGTCATA
Found at i:26271608 original size:35 final size:36
Alignment explanation
Indices: 26271547--26271618 Score: 92
Period size: 35 Copynumber: 2.0 Consensus size: 36
26271537 TTTATCACAG
* *
26271547 TGGCATGCTCAACATGTGAATTAGAATA-AAAAATA
1 TGGCATGCTCAACATGCGAATCAGAATATAAAAATA
* * *
26271582 TGGCATGCTTAACATGCGAGTCAGAATATCAAAATA
1 TGGCATGCTCAACATGCGAATCAGAATATAAAAATA
26271618 T
1 T
26271619 TATCATGTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
35 24 0.77
36 7 0.23
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.26
Consensus pattern (36 bp):
TGGCATGCTCAACATGCGAATCAGAATATAAAAATA
Found at i:26273300 original size:39 final size:40
Alignment explanation
Indices: 26273237--26273421 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
26273227 GCTACTCGTT
* *
26273237 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
26273277 CAAATGCC-TCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
26273316 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
26273356 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACCTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AACTCGCA
26273397 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26273422 CATCATTCAA
Statistics
Matches: 128, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
39 37 0.29
40 79 0.62
41 12 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:26338268 original size:26 final size:26
Alignment explanation
Indices: 26338232--26338355 Score: 176
Period size: 26 Copynumber: 4.8 Consensus size: 26
26338222 TTCCATAGAC
26338232 CGCCACAAAGGCTTCAATTTCAGATA
1 CGCCACAAAGGCTTCAATTTCAGATA
26338258 CGCCACAAAGGCTTCAATTTCAGATA
1 CGCCACAAAGGCTTCAATTTCAGATA
* * *
26338284 TGCCACAAAGGCTTCTATTTTAGATA
1 CGCCACAAAGGCTTCAATTTCAGATA
* * *
26338310 CGCCACAAAGACTTCCATTTCAAATA
1 CGCCACAAAGGCTTCAATTTCAGATA
* *
26338336 CACCACAAAGGCTTCCATTT
1 CGCCACAAAGGCTTCAATTT
26338356 TCATACGTTT
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 88 1.00
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.26
Consensus pattern (26 bp):
CGCCACAAAGGCTTCAATTTCAGATA
Found at i:26344436 original size:14 final size:14
Alignment explanation
Indices: 26344417--26344449 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
26344407 CTAATCAGAT
26344417 AAAAAAACAA-ACAA
1 AAAAAAACAAGA-AA
26344431 AAAAAAACAAGAAA
1 AAAAAAACAAGAAA
26344445 AAAAA
1 AAAAA
26344450 TACCACATCG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 17 0.94
15 1 0.06
ACGTcount: A:0.88, C:0.09, G:0.03, T:0.00
Consensus pattern (14 bp):
AAAAAAACAAGAAA
Found at i:26345838 original size:25 final size:24
Alignment explanation
Indices: 26345802--26345848 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
26345792 ATAAATTCAT
*
26345802 AAAATATAAAATATCATCTATTTGA
1 AAAATATAAAATATAATC-ATTTGA
26345827 AAAATA-ATAAATATAATCATTT
1 AAAATATA-AAATATAATCATTT
26345849 TGATGAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 5 0.25
25 15 0.75
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.36
Consensus pattern (24 bp):
AAAATATAAAATATAATCATTTGA
Found at i:26348488 original size:20 final size:21
Alignment explanation
Indices: 26348455--26348513 Score: 59
Period size: 23 Copynumber: 2.8 Consensus size: 21
26348445 GTTTCTATTA
*
26348455 ATTTTT-TTAATATTAG-TTT
1 ATTTTTATTATTATTAGCTTT
26348474 ATTTTTATTATTATTAGCCTTTT
1 ATTTTTATTATTATTAG-C-TTT
*
26348497 ATTATTATTATATATTA
1 ATTTTTATTAT-TATTA
26348514 TTACTCTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
19 6 0.18
20 9 0.27
23 13 0.39
24 5 0.15
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.64
Consensus pattern (21 bp):
ATTTTTATTATTATTAGCTTT
Found at i:26350902 original size:26 final size:26
Alignment explanation
Indices: 26350862--26350931 Score: 95
Period size: 26 Copynumber: 2.7 Consensus size: 26
26350852 CTTTACAATA
* *
26350862 CTGCTTACACAAGCTATGAAATGGGC
1 CTGCTCACACGAGCTATGAAATGGGC
* *
26350888 TTGCTCACACGAGCTATCAAATGGGC
1 CTGCTCACACGAGCTATGAAATGGGC
*
26350914 CTACTCACACGAGCTATG
1 CTGCTCACACGAGCTATG
26350932 GGTCGAAATC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (26 bp):
CTGCTCACACGAGCTATGAAATGGGC
Found at i:26353241 original size:13 final size:13
Alignment explanation
Indices: 26353223--26353252 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
26353213 TTTTACCTTT
*
26353223 TTAATTTTCTTAG
1 TTAATTTTCTTAA
26353236 TTAATTTTCTTAA
1 TTAATTTTCTTAA
26353249 TTAA
1 TTAA
26353253 AATCTAGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.60
Consensus pattern (13 bp):
TTAATTTTCTTAA
Found at i:26368495 original size:25 final size:25
Alignment explanation
Indices: 26368467--26368518 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
26368457 AAGATCCTCC
26368467 TTTCAGTTTTTAATGAATATTACCT
1 TTTCAGTTTTTAATGAATATTACCT
26368492 TTTCAGTTTTTAATGAATATTACCT
1 TTTCAGTTTTTAATGAATATTACCT
26368517 TT
1 TT
26368519 ACTCTTTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.27, C:0.12, G:0.08, T:0.54
Consensus pattern (25 bp):
TTTCAGTTTTTAATGAATATTACCT
Found at i:26368526 original size:25 final size:25
Alignment explanation
Indices: 26368465--26368527 Score: 83
Period size: 25 Copynumber: 2.6 Consensus size: 25
26368455 TGAAGATCCT
*
26368465 CCTTT-CAGTTTTTAATGAATATTA
1 CCTTTACACTTTTTAATGAATATTA
* *
26368489 CCTTTTCAGTTTTTAATGAATATTA
1 CCTTTACACTTTTTAATGAATATTA
*
26368514 CCTTTACTCTTTTT
1 CCTTTACACTTTTT
26368528 CTTCGTCTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
24 5 0.14
25 30 0.86
ACGTcount: A:0.24, C:0.16, G:0.06, T:0.54
Consensus pattern (25 bp):
CCTTTACACTTTTTAATGAATATTA
Found at i:26370892 original size:42 final size:42
Alignment explanation
Indices: 26370774--26370984 Score: 243
Period size: 42 Copynumber: 5.0 Consensus size: 42
26370764 ACCGTTACAT
* *
26370774 GGTGGAATCAGCGCTTAGCAACCATCTTATAATCAATGATAC
1 GGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATAC
* * * *
26370816 GG-GGAATCAACACATAGCAACC-CCTTTCACAATCAAGGATAC
1 GGTGGAATCAGCACTTAGCAACCACC-TT-ATAATCAATGATAC
26370858 GGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATAC
1 GGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATAC
* * * *
26370900 AG-GGAATCAGCACATAGCAACC-CCTTTCACAATCAAAGATAC
1 GGTGGAATCAGCACTTAGCAACCACC-TT-ATAATCAATGATAC
*
26370942 GGTGGAATCAACACTTAGC-ACCAACCTTATAATCAATGATAC
1 GGTGGAATCAGCACTTAGCAACC-ACCTTATAATCAATGATAC
26370984 G
1 G
26370985 AGTTCACATA
Statistics
Matches: 141, Mismatches: 19, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
40 3 0.02
41 40 0.28
42 58 0.41
43 36 0.26
44 4 0.03
ACGTcount: A:0.37, C:0.25, G:0.17, T:0.21
Consensus pattern (42 bp):
GGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATAC
Found at i:26370915 original size:84 final size:84
Alignment explanation
Indices: 26370774--26370983 Score: 350
Period size: 84 Copynumber: 2.5 Consensus size: 84
26370764 ACCGTTACAT
* * *
26370774 GGTGGAATCAGCGCTTAGCAACCATCTTATAATCAATGATACGGGGAATCAACACATAGCAACCC
1 GGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACAGGGAATCAACACATAGCAACCC
*
26370839 CTTTCACAATCAAGGATAC
66 CTTTCACAATCAAAGATAC
*
26370858 GGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACAGGGAATCAGCACATAGCAACCC
1 GGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACAGGGAATCAACACATAGCAACCC
26370923 CTTTCACAATCAAAGATAC
66 CTTTCACAATCAAAGATAC
*
26370942 GGTGGAATCAACACTTAGC-ACCAACCTTATAATCAATGATAC
1 GGTGGAATCAGCACTTAGCAACC-ACCTTATAATCAATGATAC
26370984 GAGTTCACAT
Statistics
Matches: 119, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
83 3 0.03
84 116 0.97
ACGTcount: A:0.37, C:0.25, G:0.16, T:0.21
Consensus pattern (84 bp):
GGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACAGGGAATCAACACATAGCAACCC
CTTTCACAATCAAAGATAC
Found at i:26371071 original size:51 final size:50
Alignment explanation
Indices: 26370989--26371127 Score: 163
Period size: 51 Copynumber: 2.7 Consensus size: 50
26370979 GATACGAGTT
*
26370989 CACATAGTAGCCTACACATAGTACTACACATGTGACCATCA-CTATCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACCA--AGCTATCCGATA
* * * * *
26371040 CACGTGGTAGCCTGCAGATAGTACTACACATGTGATCGAAGCTATCCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGA-CCAAGCTATCCGATA
* * *
26371091 CGCATAGTAGCCAGCACATAGTACTACACATGCGACC
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACC
26371128 TATCTTTTTG
Statistics
Matches: 73, Mismatches: 13, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
50 2 0.03
51 69 0.95
52 2 0.03
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.22
Consensus pattern (50 bp):
CACATAGTAGCCTGCACATAGTACTACACATGTGACCAAGCTATCCGATA
Found at i:26383391 original size:50 final size:50
Alignment explanation
Indices: 26383312--26383457 Score: 130
Period size: 50 Copynumber: 2.9 Consensus size: 50
26383302 TTTCCTGTAC
* * * * * ** *
26383312 TGCCAATGCCATATCCCAGATATCATCTTACATGGGAGTTCTCATATTGG
1 TGCCAACGCCATGTCCCAAACATGATCTTACATGGGACCTCTCATATCGG
* * * ** *
26383362 TGCCCATGCCATGTCCCAAACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAAACATGATCTTACATGGGACCTCTCATATCGG
* * * *
26383412 TGCCAACGCGATGTCCCAGACATGATCTTATATGGTACCTCTCATA
1 TGCCAACGCCATGTCCCAAACATGATCTTACATGGGACCTCTCATA
26383458 GTCTCAATGA
Statistics
Matches: 74, Mismatches: 22, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
50 74 1.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAAACATGATCTTACATGGGACCTCTCATATCGG
Found at i:26389626 original size:23 final size:23
Alignment explanation
Indices: 26389596--26389641 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
26389586 TTTTGTCATT
26389596 GTATCATCTATGGTAAAACTAAC
1 GTATCATCTATGGTAAAACTAAC
26389619 GTATCATCTATGGTAAAACTAAC
1 GTATCATCTATGGTAAAACTAAC
26389642 CCAATTTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.30
Consensus pattern (23 bp):
GTATCATCTATGGTAAAACTAAC
Found at i:26392863 original size:25 final size:24
Alignment explanation
Indices: 26392835--26392950 Score: 74
Period size: 25 Copynumber: 4.7 Consensus size: 24
26392825 TCATGTACAT
26392835 GTATGATCATACGAGCTATGAATCG
1 GTATGATCATACGAGCTA-GAATCG
* *
26392860 GTATGTTC-TCGCGAGCTAGAAATCG
1 GTATGATCAT-ACGAGCTAG-AATCG
* *
26392885 GTAAGCTCATACGAGCTGAGAATCG
1 GTATGATCATACGAGCT-AGAATCG
* * * *
26392910 ATATGCTC-TCACAAGCTAAAATCG
1 GTATGATCAT-ACGAGCTAGAATCG
* * *
26392934 GTAAGCTCATACAAGCT
1 GTATGATCATACGAGCT
26392951 GTGGTGTGTC
Statistics
Matches: 74, Mismatches: 11, Indels: 13
0.76 0.11 0.13
Matches are distributed among these distances:
24 22 0.30
25 49 0.66
26 3 0.04
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (24 bp):
GTATGATCATACGAGCTAGAATCG
Found at i:26392951 original size:49 final size:51
Alignment explanation
Indices: 26392841--26392951 Score: 156
Period size: 50 Copynumber: 2.2 Consensus size: 51
26392831 ACATGTATGA
* * * *
26392841 TCATACGAGCT-ATGAATCGGTATGTTCTCGCGAGCTAGAAATCGGTAAGC
1 TCATACGAGCTGATGAATCGATATGCTCTCACAAGCTAGAAATCGGTAAGC
26392891 TCATACGAGCTGA-GAATCGATATGCTCTCACAAGCTA-AAATCGGTAAGC
1 TCATACGAGCTGATGAATCGATATGCTCTCACAAGCTAGAAATCGGTAAGC
*
26392940 TCATACAAGCTG
1 TCATACGAGCTG
26392952 TGGTGTGTCC
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
49 23 0.42
50 31 0.56
51 1 0.02
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.24
Consensus pattern (51 bp):
TCATACGAGCTGATGAATCGATATGCTCTCACAAGCTAGAAATCGGTAAGC
Found at i:26397781 original size:6 final size:6
Alignment explanation
Indices: 26397762--26397814 Score: 61
Period size: 6 Copynumber: 8.8 Consensus size: 6
26397752 ACCGATTTAA
* * * * *
26397762 CCACCG CCAGCG CCACCG CCAGCG CCACCG CCACTG CCACTG CCACTG
1 CCACCG CCACCG CCACCG CCACCG CCACCG CCACCG CCACCG CCACCG
26397810 CCACC
1 CCACC
26397815 TCACCTTCTC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.17, C:0.58, G:0.19, T:0.06
Consensus pattern (6 bp):
CCACCG
Found at i:26401108 original size:16 final size:16
Alignment explanation
Indices: 26401087--26401120 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
26401077 ATCTAGGCCA
26401087 TAAATTTTCAACACTG
1 TAAATTTTCAACACTG
26401103 TAAATTTTCAACACTG
1 TAAATTTTCAACACTG
26401119 TA
1 TA
26401121 TCATTATCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.38, C:0.18, G:0.06, T:0.38
Consensus pattern (16 bp):
TAAATTTTCAACACTG
Found at i:26406900 original size:25 final size:25
Alignment explanation
Indices: 26406871--26406930 Score: 95
Period size: 26 Copynumber: 2.4 Consensus size: 25
26406861 AATTGTTTCA
26406871 TAAAAACTC-TCAAATTTGATTCTTT
1 TAAAAA-TCATCAAATTTGATTCTTT
26406896 TAAAAATCAGTCAAATTTGATTCTTT
1 TAAAAATCA-TCAAATTTGATTCTTT
26406922 TAAAAATCA
1 TAAAAATCA
26406931 ATCCTATTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
24 2 0.06
25 6 0.18
26 25 0.76
ACGTcount: A:0.42, C:0.13, G:0.05, T:0.40
Consensus pattern (25 bp):
TAAAAATCATCAAATTTGATTCTTT
Found at i:26406909 original size:26 final size:26
Alignment explanation
Indices: 26406880--26406930 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
26406870 ATAAAAACTC
26406880 TCAAATTTGATTCTTTTAAAAATCAG
1 TCAAATTTGATTCTTTTAAAAATCAG
26406906 TCAAATTTGATTCTTTTAAAAATCA
1 TCAAATTTGATTCTTTTAAAAATCA
26406931 ATCCTATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.43
Consensus pattern (26 bp):
TCAAATTTGATTCTTTTAAAAATCAG
Found at i:26408503 original size:28 final size:26
Alignment explanation
Indices: 26408472--26408635 Score: 157
Period size: 28 Copynumber: 6.0 Consensus size: 26
26408462 ACATTTTGGT
* *
26408472 GAATCAAGAAAAAAAAATCCTTTGTTGC
1 GAATCATG-AAAAAAAA-CCTTTGTGGC
*
26408500 GAATCATGAAAGAAAAACCTTTGTGGA
1 GAATCATGAAA-AAAAACCTTTGTGGC
* *
26408527 GAAATCATGAAAGAAAAGCTTTTGTGGC
1 G-AATCATGAAA-AAAAACCTTTGTGGC
* **
26408555 GAAATCATGAAAGAAAAGCCTTTGTGAT
1 G-AATCATGAAA-AAAAACCTTTGTGGC
* *
26408583 GAATCATGAAAGAAAATCTTTTGTGGC
1 GAATCATGAAA-AAAAACCTTTGTGGC
26408610 GAATCATGAAAGAAAAACCTTTGTGG
1 GAATCATGAAA-AAAAACCTTTGTGG
26408636 AAAATTATGA
Statistics
Matches: 119, Mismatches: 15, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
27 58 0.49
28 61 0.51
ACGTcount: A:0.42, C:0.12, G:0.21, T:0.25
Consensus pattern (26 bp):
GAATCATGAAAAAAAACCTTTGTGGC
Found at i:26408510 original size:55 final size:54
Alignment explanation
Indices: 26408449--26408635 Score: 225
Period size: 55 Copynumber: 3.4 Consensus size: 54
26408439 ATAAACACGC
* * * * *
26408449 CATGAAAGAATAGACATTT-TGGTGAATCAAGAAAAAAAAATCCTTTGTTGCGAAT
1 CATGAAAGAA-AGACCTTTGTGGTGAATCATG-AAAGAAAATCTTTTGTGGCGAAT
* * *
26408504 CATGAAAGAAAAACCTTTGTGGAGAAATCATGAAAGAAAAGCTTTTGTGGCGAAAT
1 CATGAAAGAAAGACCTTTGTGGTG-AATCATGAAAGAAAATCTTTTGTGGCG-AAT
*
26408560 CATGAAAGAAA-AGCCTTTGTGATGAATCATGAAAGAAAATCTTTTGTGGCGAAT
1 CATGAAAGAAAGA-CCTTTGTGGTGAATCATGAAAGAAAATCTTTTGTGGCGAAT
*
26408614 CATGAAAGAAAAACCTTTGTGG
1 CATGAAAGAAAGACCTTTGTGG
26408636 AAAATTATGA
Statistics
Matches: 115, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
54 28 0.24
55 58 0.50
56 29 0.25
ACGTcount: A:0.42, C:0.11, G:0.21, T:0.26
Consensus pattern (54 bp):
CATGAAAGAAAGACCTTTGTGGTGAATCATGAAAGAAAATCTTTTGTGGCGAAT
Found at i:26408523 original size:27 final size:27
Alignment explanation
Indices: 26408449--26408635 Score: 205
Period size: 27 Copynumber: 6.8 Consensus size: 27
26408439 ATAAACACGC
* * *
26408449 CATGAAAGAATAGACATTT-TGGTGAAT
1 CATGAAAGAA-AAACCTTTGTGGCGAAT
* * *
26408476 CAAGAAAAAAAAATCCTTTGTTGCGAAT
1 CATGAAAGAAAAA-CCTTTGTGGCGAAT
*
26408504 CATGAAAGAAAAACCTTTGTGGAGAAAT
1 CATGAAAGAAAAACCTTTGTGGCG-AAT
* *
26408532 CATGAAAGAAAAGCTTTTGTGGCGAAAT
1 CATGAAAGAAAAACCTTTGTGGCG-AAT
* **
26408560 CATGAAAGAAAAGCCTTTGTGATGAAT
1 CATGAAAGAAAAACCTTTGTGGCGAAT
* *
26408587 CATGAAAGAAAATCTTTTGTGGCGAAT
1 CATGAAAGAAAAACCTTTGTGGCGAAT
26408614 CATGAAAGAAAAACCTTTGTGG
1 CATGAAAGAAAAACCTTTGTGG
26408636 AAAATTATGA
Statistics
Matches: 135, Mismatches: 22, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
26 2 0.01
27 67 0.50
28 66 0.49
ACGTcount: A:0.42, C:0.11, G:0.21, T:0.26
Consensus pattern (27 bp):
CATGAAAGAAAAACCTTTGTGGCGAAT
Found at i:26410221 original size:50 final size:50
Alignment explanation
Indices: 26410114--26410289 Score: 189
Period size: 50 Copynumber: 3.5 Consensus size: 50
26410104 TGCCAAAGCT
* ** *
26410114 ATGTCCCAGACATAGTCTTACATGGGATGTTTCTTGTA-C--TGCCAATGCC
1 ATGTCCCAGACATGGTCTTACATGGGA-G-TTCTAATATCGGTGCCCATGCC
* *
26410163 ATATCCCAGATATGGTCTTACATGGGAGTTCTAATATCGGTGCCCATGCC
1 ATGTCCCAGACATGGTCTTACATGGGAGTTCTAATATCGGTGCCCATGCC
* ** * * *
26410213 ATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGGT-CCCAACGCC
1 ATGTCCCAGACATGGTCTTACATGGGAGTTCTAATATCGGTGCCC-ATGCC
26410263 ATGTCCCAGACATGGTCTTACATGGGA
1 ATGTCCCAGACATGGTCTTACATGGGA
26410290 CCTCTCATAG
Statistics
Matches: 108, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
47 6 0.06
48 2 0.02
49 27 0.25
50 73 0.68
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (50 bp):
ATGTCCCAGACATGGTCTTACATGGGAGTTCTAATATCGGTGCCCATGCC
Found at i:26410290 original size:50 final size:51
Alignment explanation
Indices: 26410155--26410346 Score: 210
Period size: 50 Copynumber: 3.7 Consensus size: 51
26410145 TCTTGTACTG
* * ** *
26410155 CCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTAATATCGGTGC
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGC
* *
26410206 CC-ATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGGT-C
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGC
* *
26410255 CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAGCCTCAATGATG-
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATA---TC---GGTGC
*
26410311 CCAATGCCCATGTCTCAGACATGGTCTTACATGGGA
1 CCAATG-CCATGTCCCAGACATGGTCTTACATGGGA
26410347 TCTCATCACC
Statistics
Matches: 119, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
49 3 0.03
50 77 0.65
51 2 0.02
53 2 0.02
56 7 0.06
57 28 0.24
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (51 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGC
Found at i:26432477 original size:27 final size:27
Alignment explanation
Indices: 26432447--26432624 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
26432437 ATATTGAGCC
* * *
26432447 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
26432474 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
26432501 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
26432529 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
26432556 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
26432583 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
26432610 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26432625 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:26432540 original size:55 final size:55
Alignment explanation
Indices: 26432447--26432624 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
26432437 ATATTGAGCC
* * *
26432447 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
26432501 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
26432556 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
26432610 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26432625 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:26432586 original size:82 final size:81
Alignment explanation
Indices: 26432468--26432623 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
26432458 TGCTATACAA
* * *
26432468 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
26432533 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
26432550 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
26432614 CACTTAGTGC
65 CACTTAGTGC
26432624 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26440380 original size:27 final size:27
Alignment explanation
Indices: 26440350--26440527 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
26440340 ATATTGAGCC
* * *
26440350 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
26440377 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
26440404 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
26440432 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
26440459 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
26440486 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
26440513 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26440528 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:26440443 original size:55 final size:55
Alignment explanation
Indices: 26440350--26440527 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
26440340 ATATTGAGCC
* * *
26440350 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
26440404 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
26440459 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
26440513 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26440528 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:26440489 original size:82 final size:81
Alignment explanation
Indices: 26440371--26440526 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
26440361 TGCTATACAA
* * *
26440371 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
26440436 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
26440453 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
26440517 CACTTAGTGC
65 CACTTAGTGC
26440527 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26455187 original size:42 final size:42
Alignment explanation
Indices: 26455053--26455236 Score: 185
Period size: 42 Copynumber: 4.4 Consensus size: 42
26455043 CTCGGTGGAT
* * *
26455053 TCAGCACGTAGCAACCATC-TTAAATTCAGTGATACGGGGAA
1 TCAGCACTTAGCAACCACCTTTAAATTCAATGATACGGGGAA
* * *
26455094 TCAGCACATAGCAACC-CCTTTCACAA-TCAAAGATACAGTGGAA
1 TCAGCACTTAGCAACCACCTTT-A-AATTCAATGATAC-GGGGAA
* *
26455137 TCAGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAA
1 TCAGCACTTAGCAACCACCTTTAAATTCAATGATACGGGGAA
* * * * * *
26455179 TCAGCACTTAGCAACTACCTTTAGAGTAAATAATTCGGGGAA
1 TCAGCACTTAGCAACCACCTTTAAATTCAATGATACGGGGAA
*
26455221 TCAGCACTTAGAAACC
1 TCAGCACTTAGCAACC
26455237 TCTCGGGGAA
Statistics
Matches: 118, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
40 1 0.01
41 17 0.14
42 64 0.54
43 31 0.26
44 5 0.04
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (42 bp):
TCAGCACTTAGCAACCACCTTTAAATTCAATGATACGGGGAA
Found at i:26455635 original size:30 final size:30
Alignment explanation
Indices: 26455599--26455657 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
26455589 GTCTTAACTC
26455599 AAACTTTGGCAAAAGTACAATTTTGCCCCT
1 AAACTTTGGCAAAAGTACAATTTTGCCCCT
* ** *
26455629 AAACTTTTGCAAATTTACACTTTTGCCCC
1 AAACTTTGGCAAAAGTACAATTTTGCCCC
26455658 AAAGCTGAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.25, G:0.10, T:0.34
Consensus pattern (30 bp):
AAACTTTGGCAAAAGTACAATTTTGCCCCT
Found at i:26457912 original size:44 final size:44
Alignment explanation
Indices: 26457806--26457965 Score: 189
Period size: 44 Copynumber: 3.6 Consensus size: 44
26457796 TAATTACACG
* * * * *
26457806 GTGGAATCAGCAGTTAGCAACCACCTTTA-TATTCAAGGTTATCCG
1 GTGGAATCAGCACTTAGCAACCACC-TTACT-TACATGGATATCCA
* * *
26457851 GTAGAATCAACAATTAGCAACCACCTTACTTACATGGATATCC-
1 GTGGAATCAGCACTTAGCAACCACCTTACTTACATGGATATCCA
*
26457894 GATGGAATCAGGACTTAGCAACCACCTTACTTACATGGATATCCA
1 G-TGGAATCAGCACTTAGCAACCACCTTACTTACATGGATATCCA
*
26457939 GTGGAATTAGCACTTAGCAACCACCTT
1 GTGGAATCAGCACTTAGCAACCACCTT
26457966 TATATTCAAG
Statistics
Matches: 100, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
43 1 0.01
44 75 0.75
45 24 0.24
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (44 bp):
GTGGAATCAGCACTTAGCAACCACCTTACTTACATGGATATCCA
Found at i:26459317 original size:47 final size:47
Alignment explanation
Indices: 26459248--26459342 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 47
26459238 TATAAAGGAC
*
26459248 AAAAGGATTTAATACATTAAGGGTTAATCAAAGAGAGGTTATGTCGA
1 AAAAGGATTTAATACATGAAGGGTTAATCAAAGAGAGGTTATGTCGA
*
26459295 AAAAGGATTTAATACATGAAGGGTTAATCACAGAGAGGTTATGTCGA
1 AAAAGGATTTAATACATGAAGGGTTAATCAAAGAGAGGTTATGTCGA
26459342 A
1 A
26459343 TCATGACTGC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.42, C:0.07, G:0.24, T:0.26
Consensus pattern (47 bp):
AAAAGGATTTAATACATGAAGGGTTAATCAAAGAGAGGTTATGTCGA
Found at i:26459543 original size:17 final size:17
Alignment explanation
Indices: 26459521--26459564 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
26459511 CTGTCACTTG
26459521 AATTAAATTTATAACAA
1 AATTAAATTTATAACAA
* * *
26459538 AATTAATTTTATTACAG
1 AATTAAATTTATAACAA
26459555 AATTAAATTT
1 AATTAAATTT
26459565 TTTAGTTGGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (17 bp):
AATTAAATTTATAACAA
Found at i:26462493 original size:25 final size:25
Alignment explanation
Indices: 26462444--26462493 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
26462434 ATTGCATCAG
*
26462444 TAAGTATGCTCACACGAGATGTGAA
1 TAAGTATGCTCACACGAGATATGAA
* *
26462469 TAAGTATGCTTACACGAGCTATGAA
1 TAAGTATGCTCACACGAGATATGAA
26462494 ATGGGCCTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (25 bp):
TAAGTATGCTCACACGAGATATGAA
Found at i:26474765 original size:65 final size:65
Alignment explanation
Indices: 26474689--26474820 Score: 264
Period size: 65 Copynumber: 2.0 Consensus size: 65
26474679 ACAAGAAAGT
26474689 TAGTGGGAGCACTATAATATTCTTGGTACTGTATGTGGATGACATACTTATCATAGGAAATGACA
1 TAGTGGGAGCACTATAATATTCTTGGTACTGTATGTGGATGACATACTTATCATAGGAAATGACA
26474754 TAGTGGGAGCACTATAATATTCTTGGTACTGTATGTGGATGACATACTTATCATAGGAAATGACA
1 TAGTGGGAGCACTATAATATTCTTGGTACTGTATGTGGATGACATACTTATCATAGGAAATGACA
26474819 TA
1 TA
26474821 CCTATCTTGC
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 67 1.00
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.33
Consensus pattern (65 bp):
TAGTGGGAGCACTATAATATTCTTGGTACTGTATGTGGATGACATACTTATCATAGGAAATGACA
Found at i:26480193 original size:40 final size:40
Alignment explanation
Indices: 26480143--26480328 Score: 144
Period size: 40 Copynumber: 4.7 Consensus size: 40
26480133 AGAGCATTCT
* * *
26480143 TTTCAATAGATTTAGTAGGTATGGCTTC-AGAGCGCATACA
1 TTTCAGTAGATTCAGTAGGTATGGC-TCAAAAGCGCATACA
* * * * **
26480183 TTTCAGTAGATTCAATAGGTAAGGCTCGAAAGTGCATATG
1 TTTCAGTAGATTCAGTAGGTATGGCTCAAAAGCGCATACA
* *
26480223 TTT-AGTAGA-TCTAGTAGGCATGGCTCAAAATCGCATACA
1 TTTCAGTAGATTC-AGTAGGTATGGCTCAAAAGCGCATACA
* * *** * *
26480262 TTTTAGTAGATTCACTAGGTACCTCTCGAAAGCGCATACG
1 TTTCAGTAGATTCAGTAGGTATGGCTCAAAAGCGCATACA
* * *
26480302 TATAAGTAGATTCAGTAGGTATCGCTC
1 TTTCAGTAGATTCAGTAGGTATGGCTC
26480329 GTCCGAGCAC
Statistics
Matches: 113, Mismatches: 29, Indels: 8
0.75 0.19 0.05
Matches are distributed among these distances:
38 2 0.02
39 30 0.27
40 79 0.70
41 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (40 bp):
TTTCAGTAGATTCAGTAGGTATGGCTCAAAAGCGCATACA
Found at i:26480290 original size:79 final size:79
Alignment explanation
Indices: 26480149--26480299 Score: 196
Period size: 79 Copynumber: 1.9 Consensus size: 79
26480139 TTCTTTTCAA
* * * *
26480149 TAGATTTAGTAGGTATGGCTTCAGAGCGCATACATTTCAGTAGATTCAATAGGTAAGGCTCGAAA
1 TAGATCTAGTAGGCATGGCTTCAAAGCGCATACATTTCAGTAGATTCAATAGGTAACGCTCGAAA
*
26480214 GTGCATATGTTTAG
66 GCGCATATGTTTAG
* * * * *
26480228 TAGATCTAGTAGGCATGGC-TCAAAATCGCATACATTTTAGTAGATTCACTAGGTACCTCTCGAA
1 TAGATCTAGTAGGCATGGCTTC-AAAGCGCATACATTTCAGTAGATTCAATAGGTAACGCTCGAA
26480292 AGCGCATA
65 AGCGCATA
26480300 CGTATAAGTA
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
78 2 0.03
79 59 0.97
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.30
Consensus pattern (79 bp):
TAGATCTAGTAGGCATGGCTTCAAAGCGCATACATTTCAGTAGATTCAATAGGTAACGCTCGAAA
GCGCATATGTTTAG
Found at i:26482809 original size:155 final size:146
Alignment explanation
Indices: 26482547--26482855 Score: 341
Period size: 154 Copynumber: 2.0 Consensus size: 146
26482537 ATAATAGCGC
* * * *
26482547 CAAAAAAATTAATCACAACGCCGTTGATTGAGCTTTAGTGGCATTAGCGGCACTTTTTTAAAGTG
1 CAAAAAAATTAATCACAACGCCGTTGATTGAGCTTCAGTGGCATTAGCGACACTTTTTGAAAGCG
*
26482612 CCGCTAATGCTCGATCTATAGCGACGTTTGGGACAAAGCGCCGCTAATTCTCAATATATAGCGG-
66 CCGCTAATGCTAGATCTATAGCGACGTTTGGGACAAAGCGCCGCTAA-TCTCAATATATAGCGGA
26482676 TGTTTTTAGAAAAACGCCA
130 T-TTTTTA-AAAAACGCCA
**
26482695 CAAAAAAATTAATCACAACGCCGTAGTTTTAGATTGAGCTTCAGTGGCATTAGCGATGCTTTTTA
1 CAAAAAAATTAATCACAACGCC---G--TT-GATTGAGCTTCAGTGGCATTAGCGACACTTTTT-
* * * *** * ** *
26482760 GAAAGCGCGGCTAATGCTAGATCTATAGTGGCGTTTTTTATATCGCGCCGCTAATCTCAATGTAT
59 GAAAGCGCCGCTAATGCTAGATCTATAGCGACGTTTGGGACAAAGCGCCGCTAATCTCAATATAT
*
26482825 AGCGGCATTTTTTAAAAACCGCCA
124 AGCGG-ATTTTTTAAAAAACGCCA
*
26482849 TAAAAAA
1 CAAAAAA
26482856 GATGGGCAAA
Statistics
Matches: 133, Mismatches: 19, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
148 22 0.17
151 1 0.01
153 2 0.02
154 59 0.44
155 48 0.36
156 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.29
Consensus pattern (146 bp):
CAAAAAAATTAATCACAACGCCGTTGATTGAGCTTCAGTGGCATTAGCGACACTTTTTGAAAGCG
CCGCTAATGCTAGATCTATAGCGACGTTTGGGACAAAGCGCCGCTAATCTCAATATATAGCGGAT
TTTTTAAAAAACGCCA
Found at i:26482818 original size:154 final size:147
Alignment explanation
Indices: 26482460--26482855 Score: 343
Period size: 146 Copynumber: 2.6 Consensus size: 147
26482450 TGCTTCTTTA
** * ** * * * * ** *
26482460 AAAGCGCCGCTAATGCCCGATCTATAACGGTGCTTGGGACAAAACACCACTAATTCTTGATATGT
1 AAAGCGCCGCTAATGCTAGATCTATAGCGACGTTTGGGACAAAGCGCCGCTAATTCTCAATATAT
* * * *
26482525 AGTGGCA-TTTTTATAATA-GCGC-CAAAAAAATTAATCACAACGCCGTTGATTGAGCTTTAGTG
66 AGCGG-ATTTTTTAAAAAACGC-CACAAAAAAATTAATCACAACGCCGTTGATTGAGCTTCAGTG
* *
26482587 GCATTAGCGGCACTTTTTT
129 GCATTAGCGACACTTTTTG
* *
26482606 AAAGTGCCGCTAATGCTCGATCTATAGCGACGTTTGGGACAAAGCGCCGCTAATTCTCAATATAT
1 AAAGCGCCGCTAATGCTAGATCTATAGCGACGTTTGGGACAAAGCGCCGCTAATTCTCAATATAT
26482671 AGCGG-TGTTTTTAGAAAAACGCCACAAAAAAATTAATCACAACGCCGTAGTTTTAGATTGAGCT
66 AGCGGAT-TTTTTA-AAAAACGCCACAAAAAAATTAATCACAACGCC---G--TT-GATTGAGCT
**
26482735 TCAGTGGCATTAGCGATGCTTTTTAG
123 TCAGTGGCATTAGCGACACTTTTT-G
* * * *** * ** *
26482761 AAAGCGCGGCTAATGCTAGATCTATAGTGGCGTTTTTTATATCGCGCCGCTAA-TCTCAATGTAT
1 AAAGCGCCGCTAATGCTAGATCTATAGCGACGTTTGGGACAAAGCGCCGCTAATTCTCAATATAT
* *
26482825 AGCGGCATTTTTTAAAAACCGCCATAAAAAA
66 AGCGG-ATTTTTTAAAAAACGCCACAAAAAA
26482856 GATGGGCAAA
Statistics
Matches: 202, Mismatches: 34, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
146 63 0.31
147 4 0.02
148 24 0.12
151 1 0.00
153 2 0.01
154 59 0.29
155 48 0.24
156 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (147 bp):
AAAGCGCCGCTAATGCTAGATCTATAGCGACGTTTGGGACAAAGCGCCGCTAATTCTCAATATAT
AGCGGATTTTTTAAAAAACGCCACAAAAAAATTAATCACAACGCCGTTGATTGAGCTTCAGTGGC
ATTAGCGACACTTTTTG
Found at i:26483046 original size:7 final size:7
Alignment explanation
Indices: 26483031--26483075 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
26483021 TATATTGGGA
26483031 TTAGAGT
1 TTAGAGT
*
26483038 TTTGAGT
1 TTAGAGT
26483045 TTAGAGT
1 TTAGAGT
26483052 TTAGAGT
1 TTAGAGT
* *
26483059 TTACAAT
1 TTAGAGT
*
26483066 TTACAGT
1 TTAGAGT
26483073 TTA
1 TTA
26483076 TGGTTTGGGG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.29, C:0.04, G:0.20, T:0.47
Consensus pattern (7 bp):
TTAGAGT
Found at i:26483431 original size:7 final size:7
Alignment explanation
Indices: 26483321--26483481 Score: 83
Period size: 7 Copynumber: 22.7 Consensus size: 7
26483311 TATGTTAAGA
*
26483321 GTTTAGT
1 GTTTAGG
*
26483328 GTTTACG
1 GTTTAGG
*
26483335 GTTTAAG
1 GTTTAGG
*
26483342 GTGT-GG
1 GTTTAGG
*
26483348 GTTTATG
1 GTTTAGG
*
26483355 GTTTAGT
1 GTTTAGG
*
26483362 GTTTAGT
1 GTTTAGG
26483369 GTTTAGG
1 GTTTAGG
*
26483376 GATTAAGG
1 G-TTTAGG
26483384 G-TTAGG
1 GTTTAGG
*
26483390 AGCTTAGG
1 -GTTTAGG
*
26483398 ATTTAGG
1 GTTTAGG
*
26483405 GGTTATGG
1 GTTTA-GG
*
26483413 GCTTAGG
1 GTTTAGG
*
26483420 CTTTAGG
1 GTTTAGG
26483427 GTTTAGGG
1 GTTTA-GG
* *
26483435 GCTTAGA
1 GTTTAGG
*
26483442 GTTTATG
1 GTTTAGG
*
26483449 GTTTATG
1 GTTTAGG
**
26483456 GTTTACT
1 GTTTAGG
*
26483463 GTTTAGT
1 GTTTAGG
*
26483470 GTTTATG
1 GTTTAGG
26483477 GTTTA
1 GTTTA
26483482 ACTGAAAACA
Statistics
Matches: 118, Mismatches: 30, Indels: 12
0.74 0.19 0.08
Matches are distributed among these distances:
6 8 0.07
7 87 0.74
8 23 0.19
ACGTcount: A:0.17, C:0.04, G:0.34, T:0.45
Consensus pattern (7 bp):
GTTTAGG
Found at i:26483446 original size:22 final size:22
Alignment explanation
Indices: 26483375--26483453 Score: 81
Period size: 22 Copynumber: 3.6 Consensus size: 22
26483365 TAGTGTTTAG
* *
26483375 GGATTAAGGG-TTAGGAGCTTA
1 GGATTTAGGGTTTAGGGGCTTA
* *
26483396 GGATTTAGGGGTTATGGGCTTA
1 GGATTTAGGGTTTAGGGGCTTA
*
26483418 GGCTTTAGGGTTTAGGGGCTTA
1 GGATTTAGGGTTTAGGGGCTTA
*
26483440 -GAGTTTATGGTTTA
1 GGA-TTTAGGGTTTA
26483454 TGGTTTACTG
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
21 10 0.21
22 38 0.79
ACGTcount: A:0.20, C:0.05, G:0.38, T:0.37
Consensus pattern (22 bp):
GGATTTAGGGTTTAGGGGCTTA
Found at i:26483932 original size:24 final size:22
Alignment explanation
Indices: 26483891--26483959 Score: 68
Period size: 24 Copynumber: 3.0 Consensus size: 22
26483881 TTTCCCCGAT
*
26483891 TTCATTTT-CCCAATTTCCCAA
1 TTCATTTTCCCCAAATTCCCAA
* *
26483912 TTCCTTTTCCCCCCAAATTCCCCGAT
1 TTCATTTT--CCCCAAATT-CCC-AA
26483938 TTCATTTTCCCCAAATTCCCAA
1 TTCATTTTCCCCAAATTCCCAA
26483960 CTGGACTATC
Statistics
Matches: 38, Mismatches: 5, Indels: 9
0.73 0.10 0.17
Matches are distributed among these distances:
21 7 0.18
22 1 0.03
23 3 0.08
24 16 0.42
25 3 0.08
26 8 0.21
ACGTcount: A:0.22, C:0.39, G:0.01, T:0.38
Consensus pattern (22 bp):
TTCATTTTCCCCAAATTCCCAA
Found at i:26484045 original size:13 final size:13
Alignment explanation
Indices: 26484027--26484051 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26484017 CATCCGCTTC
26484027 CTCTATTCACGGA
1 CTCTATTCACGGA
26484040 CTCTATTCACGG
1 CTCTATTCACGG
26484052 TTAGTTTCGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.32, G:0.16, T:0.32
Consensus pattern (13 bp):
CTCTATTCACGGA
Found at i:26484117 original size:24 final size:24
Alignment explanation
Indices: 26484086--26484133 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
26484076 GGACTACATT
26484086 TTTGTTTCTATGGTTAATTTTTAA
1 TTTGTTTCTATGGTTAATTTTTAA
*
26484110 TTTGTTTCTATGTTTAATTTTTAA
1 TTTGTTTCTATGGTTAATTTTTAA
26484134 GCATTACTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.21, C:0.04, G:0.10, T:0.65
Consensus pattern (24 bp):
TTTGTTTCTATGGTTAATTTTTAA
Found at i:26486039 original size:8 final size:9
Alignment explanation
Indices: 26486008--26486164 Score: 157
Period size: 9 Copynumber: 17.9 Consensus size: 9
26485998 AAATTAATAT
*
26486008 ATAATTTAC
1 ATAACTTAC
26486017 ATAACTTAC
1 ATAACTTAC
26486026 ATAACTTA-
1 ATAACTTAC
26486034 ATAACTTAC
1 ATAACTTAC
26486043 ATAA--TAC
1 ATAACTTAC
* *
26486050 ATAA-ATAT
1 ATAACTTAC
* *
26486058 ATATCATATC
1 ATAACTTA-C
*
26486068 AGAACTTAC
1 ATAACTTAC
26486077 ATAACTTAC
1 ATAACTTAC
*
26486086 ATAATTTA-
1 ATAACTTAC
26486094 ATAACTTAC
1 ATAACTTAC
26486103 ATAACTTA-
1 ATAACTTAC
26486111 ATAACTTAC
1 ATAACTTAC
26486120 ATAACTTAC
1 ATAACTTAC
26486129 ATAACTTATAC
1 ATAAC-T-TAC
*
26486140 ATAATTTA-
1 ATAACTTAC
*
26486148 ATAACTTTC
1 ATAACTTAC
26486157 ATAACTTA
1 ATAACTTA
26486165 ATTATACTTG
Statistics
Matches: 125, Mismatches: 14, Indels: 18
0.80 0.09 0.11
Matches are distributed among these distances:
7 7 0.06
8 34 0.27
9 70 0.56
10 7 0.06
11 7 0.06
ACGTcount: A:0.46, C:0.16, G:0.01, T:0.37
Consensus pattern (9 bp):
ATAACTTAC
Found at i:26486039 original size:17 final size:18
Alignment explanation
Indices: 26486008--26486164 Score: 157
Period size: 17 Copynumber: 8.9 Consensus size: 18
26485998 AAATTAATAT
*
26486008 ATAATTTACATAACTTAC
1 ATAACTTACATAACTTAC
26486026 ATAACTTA-ATAACTTAC
1 ATAACTTACATAACTTAC
* *
26486043 ATAA--TACATAA-ATAT
1 ATAACTTACATAACTTAC
* * *
26486058 ATATCATATCAGAACTTAC
1 ATAACTTA-CATAACTTAC
*
26486077 ATAACTTACATAATTTA-
1 ATAACTTACATAACTTAC
26486094 ATAACTTACATAACTTA-
1 ATAACTTACATAACTTAC
26486111 ATAACTTACATAACTTAC
1 ATAACTTACATAACTTAC
*
26486129 ATAACTTATACATAATTTA-
1 ATAAC-T-TACATAACTTAC
*
26486148 ATAACTTTCATAACTTA
1 ATAACTTACATAACTTA
26486165 ATTATACTTG
Statistics
Matches: 116, Mismatches: 15, Indels: 17
0.78 0.10 0.11
Matches are distributed among these distances:
15 7 0.06
16 4 0.03
17 57 0.49
18 24 0.21
19 14 0.12
20 10 0.09
ACGTcount: A:0.46, C:0.16, G:0.01, T:0.37
Consensus pattern (18 bp):
ATAACTTACATAACTTAC
Found at i:26486042 original size:26 final size:27
Alignment explanation
Indices: 26486008--26486164 Score: 157
Period size: 26 Copynumber: 6.0 Consensus size: 27
26485998 AAATTAATAT
*
26486008 ATAATTTACATAACTTACATAACTTA-
1 ATAACTTACATAACTTACATAACTTAC
* *
26486034 ATAACTTACATAA--TACATAA-ATAT
1 ATAACTTACATAACTTACATAACTTAC
* * *
26486058 ATATCATATCAGAACTTACATAACTTAC
1 ATAACTTA-CATAACTTACATAACTTAC
*
26486086 ATAATTTA-ATAACTTACATAACTTA-
1 ATAACTTACATAACTTACATAACTTAC
26486111 ATAACTTACATAACTTACATAACTTATAC
1 ATAACTTACATAACTTACATAAC-T-TAC
* *
26486140 ATAATTTA-ATAACTTTCATAACTTA
1 ATAACTTACATAACTTACATAACTTA
26486165 ATTATACTTG
Statistics
Matches: 108, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
23 2 0.02
24 13 0.12
25 11 0.10
26 44 0.41
27 9 0.08
28 22 0.20
29 7 0.06
ACGTcount: A:0.46, C:0.16, G:0.01, T:0.37
Consensus pattern (27 bp):
ATAACTTACATAACTTACATAACTTAC
Found at i:26490740 original size:14 final size:15
Alignment explanation
Indices: 26490719--26490761 Score: 63
Period size: 14 Copynumber: 2.9 Consensus size: 15
26490709 TTAGAGTGTA
26490719 TATGAATTTTATATG
1 TATGAATTTTATATG
26490734 T-TGAATTTTAT-TG
1 TATGAATTTTATATG
26490747 TATGAATTTTCATAT
1 TATGAATTTT-ATAT
26490762 TAATAGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 3 0.12
14 18 0.72
15 3 0.12
16 1 0.04
ACGTcount: A:0.30, C:0.02, G:0.12, T:0.56
Consensus pattern (15 bp):
TATGAATTTTATATG
Found at i:26490954 original size:41 final size:41
Alignment explanation
Indices: 26490909--26491088 Score: 159
Period size: 41 Copynumber: 4.4 Consensus size: 41
26490899 GGGCTCTGTC
* * * *
26490909 CCTAGCAGGCTTTATGCCAGTGAATTATAGCAGGCTTTATG
1 CCTAGCAGGCTTTATGCCAGTGTATCATATCAGGCTTTATA
* * *
26490950 CCTAGCAGGCTTCATGCCGGTGTACCATATCA-GCTTTATA
1 CCTAGCAGGCTTTATGCCAGTGTATCATATCAGGCTTTATA
** * * * *
26490990 CCTAGCAGGCTTCGTGCCGGTGTATCATATCTGGCTTTGTG
1 CCTAGCAGGCTTTATGCCAGTGTATCATATCAGGCTTTATA
* * ** *
26491031 CCTAGAACGCTTTATGCCAGTGTATTTTAAT-AAGCTTTATA
1 CCTAGCAGGCTTTATGCCAGTGTATCAT-ATCAGGCTTTATA
26491072 CCTCA-CAGGCTTTATGC
1 CCT-AGCAGGCTTTATGC
26491089 TGATGTGGTA
Statistics
Matches: 111, Mismatches: 25, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
40 36 0.32
41 72 0.65
42 3 0.03
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (41 bp):
CCTAGCAGGCTTTATGCCAGTGTATCATATCAGGCTTTATA
Found at i:26490957 original size:16 final size:16
Alignment explanation
Indices: 26490936--26490967 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26490926 CAGTGAATTA
*
26490936 TAGCAGGCTTTATGCC
1 TAGCAGGCTTCATGCC
26490952 TAGCAGGCTTCATGCC
1 TAGCAGGCTTCATGCC
26490968 GGTGTACCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.28, G:0.25, T:0.28
Consensus pattern (16 bp):
TAGCAGGCTTCATGCC
Found at i:26495547 original size:40 final size:40
Alignment explanation
Indices: 26495497--26495582 Score: 163
Period size: 40 Copynumber: 2.1 Consensus size: 40
26495487 TTTATTCAAT
*
26495497 AATACTAACATGCTATAGACATTAAAATGATAATAAAATA
1 AATATTAACATGCTATAGACATTAAAATGATAATAAAATA
26495537 AATATTAACATGCTATAGACATTAAAATGATAATAAAATA
1 AATATTAACATGCTATAGACATTAAAATGATAATAAAATA
26495577 AATATT
1 AATATT
26495583 CTCACATTAG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.55, C:0.08, G:0.07, T:0.30
Consensus pattern (40 bp):
AATATTAACATGCTATAGACATTAAAATGATAATAAAATA
Found at i:26499314 original size:43 final size:42
Alignment explanation
Indices: 26499232--26499315 Score: 114
Period size: 43 Copynumber: 2.0 Consensus size: 42
26499222 TTATCCTAGA
* *
26499232 AAAAAAGAATTTAAAAAAGGAGAAGATAATCTTGAGTTGTTG
1 AAAAAAGAATTTAAAAAAGGAGAAGATAAACATGAGTTGTTG
* * *
26499274 AAAAAATAATTTTAAAAGAGGAGAAGATAAACATGGGTTGTT
1 AAAAAAGAA-TTTAAAAAAGGAGAAGATAAACATGAGTTGTT
26499316 CGATTTACCC
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 8 0.22
43 28 0.78
ACGTcount: A:0.50, C:0.02, G:0.21, T:0.26
Consensus pattern (42 bp):
AAAAAAGAATTTAAAAAAGGAGAAGATAAACATGAGTTGTTG
Found at i:26513820 original size:30 final size:30
Alignment explanation
Indices: 26513784--26513928 Score: 155
Period size: 30 Copynumber: 4.8 Consensus size: 30
26513774 ATGCTAAACG
*
26513784 ATGGTCGAAACCATCCCTTTTCATTAATCA
1 ATGGTCGAAACCATCCCTTTTCATAAATCA
** *
26513814 ATGGTCGTCACCATACCTTTTCATAAATCA
1 ATGGTCGAAACCATCCCTTTTCATAAATCA
* * * * **
26513844 ATGGTCAAAATCATCCATTTTCATTAATTG
1 ATGGTCGAAACCATCCCTTTTCATAAATCA
** * * *
26513874 ATGGTCGTCACCATCCCTTTTCGTAAACCG
1 ATGGTCGAAACCATCCCTTTTCATAAATCA
26513904 ATGGTCGAAACCATCCCTTTTCATA
1 ATGGTCGAAACCATCCCTTTTCATA
26513929 TTCAATAGTC
Statistics
Matches: 90, Mismatches: 25, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
30 90 1.00
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.34
Consensus pattern (30 bp):
ATGGTCGAAACCATCCCTTTTCATAAATCA
Found at i:26513878 original size:60 final size:60
Alignment explanation
Indices: 26513784--26513927 Score: 207
Period size: 60 Copynumber: 2.4 Consensus size: 60
26513774 ATGCTAAACG
*
26513784 ATGGTCGAAACCATCCCTTTTCATTAATCAATGGTCGTCACCATACCTTTTCATAAATCA
1 ATGGTCGAAACCATCCCTTTTCATTAATCAATGGTCGTCACCATACCTTTTCATAAACCA
* * * ** * * *
26513844 ATGGTCAAAATCATCCATTTTCATTAATTGATGGTCGTCACCATCCCTTTTCGTAAACCG
1 ATGGTCGAAACCATCCCTTTTCATTAATCAATGGTCGTCACCATACCTTTTCATAAACCA
26513904 ATGGTCGAAACCATCCCTTTTCAT
1 ATGGTCGAAACCATCCCTTTTCAT
26513928 ATTCAATAGT
Statistics
Matches: 72, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
60 72 1.00
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.34
Consensus pattern (60 bp):
ATGGTCGAAACCATCCCTTTTCATTAATCAATGGTCGTCACCATACCTTTTCATAAACCA
Found at i:26521359 original size:50 final size:50
Alignment explanation
Indices: 26521305--26522569 Score: 605
Period size: 50 Copynumber: 25.3 Consensus size: 50
26521295 TGTGATGTTG
* * * * ** *
26521305 GGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTGCTCCACTGCATCGCCA
1 GGGAAGTAAGATTCGCCGATGTGGCTTTAATCTTTTCAACTGCATCGCCA
* * ** * * * * * *
26521355 GGGAAGTAACACTCGATGCTGTGCCTTTAGTCTTTTTAACTGCAAT-GTCG
1 GGGAAGTAAGATTCGCCGATGTGGCTTTAATCTTTTCAACTGC-ATCGCCA
* * ** * *
26521405 GGGAAGCAAGATACGCC-ATTGTGGCTTTAATCTGCTCCACTGCATCTCCA
1 GGGAAGTAAGATTCGCCGA-TGTGGCTTTAATCTTTTCAACTGCATCGCCA
* * * ** * *
26521455 GGGAAGTAACACTCGCCGCTGTGGCTTTAGCCTTTTTAACTGCAAT-GTC-
1 GGGAAGTAAGATTCGCCGATGTGGCTTTAATCTTTTCAACTGC-ATCGCCA
* * * * ** *
26521504 GAGGAAGCAAGATACGCTG-TCGTGGCCTTAATCTGCTCCACTGCATCGCCA
1 G-GGAAGTAAGATTCGCCGAT-GTGGCTTTAATCTTTTCAACTGCATCGCCA
* * * * * * * *
26521555 AGGAAGTAACACTCGCC-ACTGTGGCTTTAGTCTTTTTTAATTGCAAT-GTCG
1 GGGAAGTAAGATTCGCCGA-TGTGGCTTTAATC-TTTTCAACTGC-ATCGCCA
* * ** ** *
26521606 GGGAAGCAAGATACGCCG-TCGTGGCTTTAATCTGCTCTTCTGTATCGCCA
1 GGGAAGTAAGATTCGCCGAT-GTGGCTTTAATCTTTTCAACTGCATCGCCA
* * *
26521656 GGGAAGTAAGATTCGCCGATGTGGCTTTAATCTTTTTTAACTGCAAT-GTCG
1 GGGAAGTAAGATTCGCCGATGTGGCTTTAATC-TTTTCAACTGC-ATCGCCA
* * * ** * *
26521707 GGGAAGCAAGATACACC-ATCGTGGCTTTAATCTGCTCTACTGTATCGCCA
1 GGGAAGTAAGATTCGCCGAT-GTGGCTTTAATCTTTTCAACTGCATCGCCA
* * *
26521757 GGGAAGTAAGATTAGCCGATGTGGCTTTAATCTTTTTAACTGCAAT-GTCA
1 GGGAAGTAAGATTCGCCGATGTGGCTTTAATCTTTTCAACTGC-ATCGCCA
** * ** *
26521807 GGGAAGCGAGATTCACCGATGTGGCTTTAATCTGCTCCACTGCATCGCCA
1 GGGAAGTAAGATTCGCCGATGTGGCTTTAATCTTTTCAACTGCATCGCCA
* * * * * * **
26521857 GGGAAGTAGGATTTGCCGCTATGGCTTTAGTCTTTTTAACTGCAAT-ATCA
1 GGGAAGTAAGATTCGCCGATGTGGCTTTAATCTTTTCAACTGC-ATCGCCA
* * * ** * **
26521907 GGGAAGCAAGATACGCCG-TCGTGGCCTTAATCTGCTCCACTGCGCCGCCA
1 GGGAAGTAAGATTCGCCGAT-GTGGCTTTAATCTTTTCAACTGCATCGCCA
* * * * * * *
26521957 GGGAAGTAGGATTCGTCGCTGTGGCTTTAATCTTTTTAACTGTAAT-GTCG
1 GGGAAGTAAGATTCGCCGATGTGGCTTTAATCTTTTCAACTG-CATCGCCA
* ** * * * *
26522007 GGGAAGCAAGATTCATCGATGTGGCTTTAATCTATTCCACCGCACCGCCA
1 GGGAAGTAAGATTCGCCGATGTGGCTTTAATCTTTTCAACTGCATCGCCA
* * * * * * *
26522057 GGGAAGT-AGCACTCGTCGCTGTGGCTTTAGTCTTTTTAACAGCAAT-GTCA
1 GGGAAGTAAG-ATTCGCCGATGTGGCTTTAATCTTTTCAACTGC-ATCGCCA
* * * * * *
26522107 GGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCT
1 GGGAAGTAAGATTCGCCGATGTGGCTTTAATCTTTTCAACTGCATCGCCA
* * ** * * * ***
26522157 GGGGAGTAAGATTTG-TTATTGTAGCTTTAATCTTTTTAACTACAAT-GTTG
1 GGGAAGTAAGATTCGCCGA-TGTGGCTTTAATCTTTTCAACTGC-ATCGCCA
** * * * *
26522207 GGGAAACAAGATTCACCGATGTGGCTTTAAT-TTGTTCCACTGCACCGCCT
1 GGGAAGTAAGATTCGCCGATGTGGCTTTAATCTT-TTCAACTGCATCGCCA
* * * * * ***
26522257 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAAT-GTTG
1 GGGAAGTAAGATTCGCCGATGTGGCTTTAATCTTTTCAACTGC-ATCGCCA
* * * *
26522307 GGGAAGTAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCATCGCCT
1 GGGAAGTAAGATTCGCCGATGTGGCTTTAATCTTTTCAACTGCATCGCCA
* * * * * * ** *
26522357 GGGGAGTAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTATAAT-GTC-
1 GGGAAGTAAGATTCGCCGATGTGGCTTTAATCTTTTCAACT-GCATCGCCA
* * * * * * *
26522406 GAGGAAGCAAGATTCACCGATGTGGTTTTAACCTATTCCACTGCATCGCCT
1 G-GGAAGTAAGATTCGCCGATGTGGCTTTAATCTTTTCAACTGCATCGCCA
* * * * * * *
26522457 GGGGAGTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAAT-GTCG
1 GGGAAGTAAGATTCGCCGATGTGGCTTTAATCTTTTCAACTGC-ATCGCCA
* * * * * *
26522507 GGGAAGCAAGATTCACCGATGTGGATTTAATCTGTTCCACTGCATCGCCT
1 GGGAAGTAAGATTCGCCGATGTGGCTTTAATCTTTTCAACTGCATCGCCA
26522557 GGGAAGTAAGATT
1 GGGAAGTAAGATT
26522570 TGAAATTCTT
Statistics
Matches: 860, Mismatches: 307, Indels: 96
0.68 0.24 0.08
Matches are distributed among these distances:
49 28 0.03
50 738 0.86
51 90 0.10
52 4 0.00
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.31
Consensus pattern (50 bp):
GGGAAGTAAGATTCGCCGATGTGGCTTTAATCTTTTCAACTGCATCGCCA
Found at i:26521412 original size:100 final size:100
Alignment explanation
Indices: 26521278--26522569 Score: 1430
Period size: 100 Copynumber: 12.9 Consensus size: 100
26521268 GTACCTTGTA
** ** * * * * *
26521278 GCTTTAATCTGCTTAACTGTGATGTTGGGGAAGCAAGATTCGCTGTTGTAGCTTTAATCTGCTCC
1 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGCTCC
* * *
26521343 ACTGCATCGCCAGGGAAGTAACACTCGATGCTGTG
66 ACTGCATCGCCAGGGAAGTAAGATTCGCTGCTGTG
* * * *
26521378 CCTTTAGTCTTTTTAACTGCAATGTCGGGGAAGCAAGATACGCC-ATTGTGGCTTTAATCTGCTC
1 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGA-TGTGGCTTTAATCTGCTC
* * * *
26521442 CACTGCATCTCCAGGGAAGTAACACTCGCCGCTGTG
65 CACTGCATCGCCAGGGAAGTAAGATTCGCTGCTGTG
** * * * * *
26521478 GCTTTAGCCTTTTTAACTGCAATGTCGAGGAAGCAAGATACGCTG-TCGTGGCCTTAATCTGCTC
1 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGAT-GTGGCTTTAATCTGCTC
* * * **
26521542 CACTGCATCGCCAAGGAAGTAACACTCGCCACTGTG
65 CACTGCATCGCCAGGGAAGTAAGATTCGCTGCTGTG
* * * *
26521578 GCTTTAGTCTTTTTTAATTGCAATGTCGGGGAAGCAAGATACGCCG-TCGTGGCTTTAATCTGCT
1 GCTTTAATC-TTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGAT-GTGGCTTTAATCTGCT
** * * *
26521642 CTTCTGTATCGCCAGGGAAGTAAGATTCGCCGATGTG
64 CCACTGCATCGCCAGGGAAGTAAGATTCGCTGCTGTG
*
26521679 GCTTTAATCTTTTTTAACTGCAATGTCGGGGAAGCAAGATACACC-ATCGTGGCTTTAATCTGCT
1 GCTTTAATC-TTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGAT-GTGGCTTTAATCTGCT
* * * * *
26521743 CTACTGTATCGCCAGGGAAGTAAGATTAGCCGATGTG
64 CCACTGCATCGCCAGGGAAGTAAGATTCGCTGCTGTG
* *
26521780 GCTTTAATCTTTTTAACTGCAATGTCAGGGAAGCGAGATTCACCGATGTGGCTTTAATCTGCTCC
1 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGCTCC
* * * *
26521845 ACTGCATCGCCAGGGAAGTAGGATTTGCCGCTATG
66 ACTGCATCGCCAGGGAAGTAAGATTCGCTGCTGTG
* * * * * *
26521880 GCTTTAGTCTTTTTAACTGCAATATCAGGGAAGCAAGATACGCCG-TCGTGGCCTTAATCTGCTC
1 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGAT-GTGGCTTTAATCTGCTC
** *
26521944 CACTGCGCCGCCAGGGAAGTAGGATTCG-TCGCTGTG
65 CACTGCATCGCCAGGGAAGTAAGATTCGCT-GCTGTG
* * **
26521980 GCTTTAATCTTTTTAACTGTAATGTCGGGGAAGCAAGATTCATCGATGTGGCTTTAATCTATTCC
1 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGCTCC
* * *
26522045 ACCGCACCGCCAGGGAAGT-AGCACTCG-TCGCTGTG
66 ACTGCATCGCCAGGGAAGTAAG-ATTCGCT-GCTGTG
* * * *
26522080 GCTTTAGTCTTTTTAACAGCAATGTCAGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
1 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGCTCC
* * * * * ** *
26522145 ACTGCACCGCCTGGGGAGTAAGATTTGTTATTGTA
66 ACTGCATCGCCAGGGAAGTAAGATTCGCTGCTGTG
* * * * *
26522180 GCTTTAATCTTTTTAACTACAATGTTGGGGAAACAAGATTCACCGATGTGGCTTTAATTTGTTCC
1 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGCTCC
* * * * *
26522245 ACTGCACCGCCTGGGGAGTAAGATTCGCTGTTGTA
66 ACTGCATCGCCAGGGAAGTAAGATTCGCTGCTGTG
* * *
26522280 GCTTTAATCTTTTTAACTGCAATGTTGGGGAAGTAAGATTCACCGATGTGGCTTTAATCTGTTCC
1 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGCTCC
* * * * *
26522345 ACTGCATCGCCTGGGGAGTAAGATTCACTGTTGTA
66 ACTGCATCGCCAGGGAAGTAAGATTCGCTGCTGTG
** * * * **
26522380 GCTTTAATCTTTTTAACTATAATGTCGAGGAAGCAAGATTCACCGATGTGGTTTTAACCTATTCC
1 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGCTCC
* * *
26522445 ACTGCATCGCCTGGGGAGTAAGATTCGCTGCTGTA
66 ACTGCATCGCCAGGGAAGTAAGATTCGCTGCTGTG
* *
26522480 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGATTTAATCTGTTCC
1 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGCTCC
*
26522545 ACTGCATCGCCTGGGAAGTAAGATT
66 ACTGCATCGCCAGGGAAGTAAGATT
26522570 TGAAATTCTT
Statistics
Matches: 1059, Mismatches: 121, Indels: 24
0.88 0.10 0.02
Matches are distributed among these distances:
99 3 0.00
100 867 0.82
101 189 0.18
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.31
Consensus pattern (100 bp):
GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGCTCC
ACTGCATCGCCAGGGAAGTAAGATTCGCTGCTGTG
Found at i:26522725 original size:44 final size:44
Alignment explanation
Indices: 26522676--26522962 Score: 228
Period size: 44 Copynumber: 6.5 Consensus size: 44
26522666 AATCCGTTCG
* * * *
26522676 ACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATTTGCTCC
1 ACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTGCTCC
* *
26522720 GCTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAATCTGCTCC
1 ACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTGCTCC
* * * * **
26522764 ACTGTAACCTCAGGGAGATAAGATTTGA-AATTCTTCGATCTATTCC
1 ACTGTAATCTCAGGGAGATAAGA-TT-ACTA-GCTTCAATCTGCTCC
* * * * * * *
26522810 ACTGTAATCTCAAGGAGATAAG---ACTTGATGCGATCTACTCT
1 ACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTGCTCC
* * * * * *
26522851 ACTGTAA-CTTCAGAGAGATAAAATCCT-TTA-TTTTAATCCGCTCC
1 ACTGTAATC-TCAGGGAGATAAGAT--TACTAGCTTCAATCTGCTCC
*
26522895 ACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCC
1 ACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTGCTCC
*
26522939 GCTGTAATCTCAGGGAGATAAGAT
1 ACTGTAATCTCAGGGAGATAAGAT
26522963 CTGAAATTCT
Statistics
Matches: 186, Mismatches: 44, Indels: 26
0.73 0.17 0.10
Matches are distributed among these distances:
40 1 0.01
41 28 0.15
42 1 0.01
43 2 0.01
44 118 0.63
45 5 0.03
46 31 0.17
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (44 bp):
ACTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTGCTCC
Found at i:26522921 original size:219 final size:219
Alignment explanation
Indices: 26522563--26522962 Score: 667
Period size: 219 Copynumber: 1.8 Consensus size: 219
26522553 GCCTGGGAAG
* * * *
26522563 TAAGATTTGAAATTCTTTGGTCTATTCACCTGTAATCTCAGGGAGATAAGACCTGATGCTATCTA
1 TAAGATTTGAAATTCTTCGATCTATTCACCTGTAATCTCAAGGAGATAAGACCTGATGCGATCTA
* * * *
26522628 CTCTACTGTAATTTCAGAGAGACAATATCCTTTATTTTAATCCGTTCGACTGTAATCTCAGGGAA
66 CTCTACTGTAACTTCAGAGAGACAAAATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAA
* *
26522693 ATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAATC
131 ATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAATC
26522758 TGCTCCACTGTAACCTCAGGGAGA
196 TGCTCCACTGTAACCTCAGGGAGA
*
26522782 TAAGATTTGAAATTCTTCGATCTATTC-CACTGTAATCTCAAGGAGATAAGACTTGATGCGATCT
1 TAAGATTTGAAATTCTTCGATCTATTCAC-CTGTAATCTCAAGGAGATAAGACCTGATGCGATCT
*
26522846 ACTCTACTGTAACTTCAGAGAGATAAAATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGA
65 ACTCTACTGTAACTTCAGAGAGACAAAATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGA
*
26522911 GATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
130 AATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
26522963 CTGAAATTCT
Statistics
Matches: 167, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
218 1 0.01
219 166 0.99
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (219 bp):
TAAGATTTGAAATTCTTCGATCTATTCACCTGTAATCTCAAGGAGATAAGACCTGATGCGATCTA
CTCTACTGTAACTTCAGAGAGACAAAATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAA
ATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAATC
TGCTCCACTGTAACCTCAGGGAGA
Found at i:26524346 original size:6 final size:7
Alignment explanation
Indices: 26524329--26524362 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
26524319 TCCATTTTAC
*
26524329 TTTTCCA
1 TTTTTCA
26524336 TTTTTCA
1 TTTTTCA
26524343 TTTTTCA
1 TTTTTCA
26524350 TTTTTCCA
1 TTTTT-CA
26524358 TTTTT
1 TTTTT
26524363 TTTGACTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
7 18 0.72
8 7 0.28
ACGTcount: A:0.12, C:0.18, G:0.00, T:0.71
Consensus pattern (7 bp):
TTTTTCA
Found at i:26524346 original size:14 final size:14
Alignment explanation
Indices: 26524319--26524361 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
26524309 CCTTAGCCTC
*
26524319 TCCATTTTAC-TTT
1 TCCATTTTTCATTT
26524332 TCCATTTTTCATTT
1 TCCATTTTTCATTT
*
26524346 TTCATTTTTCCATTT
1 TCCATTTTT-CATTT
26524361 T
1 T
26524362 TTTTGACTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 9 0.35
14 11 0.42
15 6 0.23
ACGTcount: A:0.14, C:0.21, G:0.00, T:0.65
Consensus pattern (14 bp):
TCCATTTTTCATTT
Found at i:26536773 original size:28 final size:28
Alignment explanation
Indices: 26536714--26536813 Score: 168
Period size: 28 Copynumber: 3.6 Consensus size: 28
26536704 AATGCCTTAG
26536714 TGTAATATAAATATT--TTTGAAAATAAT
1 TGTAATATAAATATTAATTT-AAAATAAT
26536741 TGTAATATAAATATTAATTTAAAATAAT
1 TGTAATATAAATATTAATTTAAAATAAT
*
26536769 TGTAATATAAATATTAATTGAAAATAAT
1 TGTAATATAAATATTAATTTAAAATAAT
26536797 TGTAATATAAATATTAA
1 TGTAATATAAATATTAA
26536814 GTGATTACAG
Statistics
Matches: 70, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
27 15 0.21
28 52 0.74
29 3 0.04
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (28 bp):
TGTAATATAAATATTAATTTAAAATAAT
Found at i:26537199 original size:11 final size:11
Alignment explanation
Indices: 26537183--26537208 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
26537173 GATTGTACAA
26537183 AAAATAAAAAT
1 AAAATAAAAAT
26537194 AAAATAAAAAT
1 AAAATAAAAAT
26537205 AAAA
1 AAAA
26537209 CATATATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:26545408 original size:33 final size:33
Alignment explanation
Indices: 26545361--26545563 Score: 154
Period size: 33 Copynumber: 5.6 Consensus size: 33
26545351 TCCTCTAAGG
26545361 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
* * * *
26545394 GATTGCTAAATGCTGATTCCACCGTATCTTAAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCC-CCGAATC----AT-TG---GT
*
26545436 GGTTGCTAAGTACTGATTCCCCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
* * *
26545469 GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCC-CCGAATC----AT-TG---GT
* *
26545511 GGTTGCTAAGTGATGATTCCCCTAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
26545544 GGTTGCTAAGTGCTGATTCC
1 GGTTGCTAAGTGCTGATTCC
26545564 ACCGTATCTT
Statistics
Matches: 133, Mismatches: 19, Indels: 36
0.71 0.10 0.19
Matches are distributed among these distances:
33 57 0.43
34 12 0.09
36 4 0.03
37 4 0.03
38 4 0.03
39 4 0.03
41 11 0.08
42 37 0.28
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
Found at i:26545455 original size:42 final size:41
Alignment explanation
Indices: 26545396--26545606 Score: 186
Period size: 33 Copynumber: 5.4 Consensus size: 41
26545386 TCATTGGTGA
*
26545396 TTGCTAAATGCTGATTCCACCGTATCTTAAATGTGAAAGGGG
1 TTGCTAAGTGCTGATTCCACCGTATCTT-AATGTGAAAGGGG
* * *
26545438 TTGCTAAGTACTGATTCC-CCGAATC---AT-TG---GTGG
1 TTGCTAAGTGCTGATTCCACCGTATCTTAATGTGAAAGGGG
*
26545471 TTGCTAAGTGCTGATCCCACCGTATCTTAAATGTGAAAGGGG
1 TTGCTAAGTGCTGATTCCACCGTATCTT-AATGTGAAAGGGG
* *
26545513 TTGCTAAGTGATGATTCC-CC-TAATC---AT-TG---GTGG
1 TTGCTAAGTGCTGATTCCACCGT-ATCTTAATGTGAAAGGGG
26545546 TTGCTAAGTGCTGATTCCACCGTATCTTTGAATGTGAAAGGGG
1 TTGCTAAGTGCTGATTCCACCGTATC-TT-AATGTGAAAGGGG
*
26545589 TTGCTAGGTGCTGATTCC
1 TTGCTAAGTGCTGATTCC
26545607 CCGAATCACT
Statistics
Matches: 134, Mismatches: 14, Indels: 41
0.71 0.07 0.22
Matches are distributed among these distances:
33 39 0.29
34 11 0.08
35 1 0.01
36 4 0.03
37 4 0.03
38 2 0.01
39 4 0.03
40 3 0.02
41 11 0.08
42 35 0.26
43 20 0.15
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (41 bp):
TTGCTAAGTGCTGATTCCACCGTATCTTAATGTGAAAGGGG
Found at i:26545483 original size:75 final size:75
Alignment explanation
Indices: 26545357--26545643 Score: 432
Period size: 75 Copynumber: 3.8 Consensus size: 75
26545347 TGATTCCTCT
* * *
26545357 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGATTGCTAAATGCTGATTCCACCGTATC
1 AAGGGGTTGCTAAGTACTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATC
26545422 TTAAATGTGA
66 TTAAATGTGA
*
26545432 AAGGGGTTGCTAAGTACTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATC
1 AAGGGGTTGCTAAGTACTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATC
26545497 TTAAATGTGA
66 TTAAATGTGA
*
26545507 AAGGGGTTGCTAAGTGA-TGATTCCCCTAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTAT
1 AAGGGGTTGCTAAGT-ACTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTAT
*
26545571 CTTTGAATGTGA
65 C-TTAAATGTGA
* * * * * * *
26545583 AAGGGGTTGCTAGGTGCTGATTCCCCGAATCACTGGTGGTTACTAACTGTTGAATCCACCG
1 AAGGGGTTGCTAAGTACTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCG
26545644 ATAATGGGTA
Statistics
Matches: 194, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
75 132 0.68
76 62 0.32
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (75 bp):
AAGGGGTTGCTAAGTACTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATC
TTAAATGTGA
Found at i:26552466 original size:10 final size:9
Alignment explanation
Indices: 26552441--26552623 Score: 52
Period size: 9 Copynumber: 19.2 Consensus size: 9
26552431 GGCAACAAAA
26552441 ATAAAAATT
1 ATAAAAATT
*
26552450 AGTAAAAGTT
1 A-TAAAAATT
26552460 ATAAAAATT
1 ATAAAAATT
**
26552469 ATTAAATTTT
1 A-TAAAAATT
*
26552479 AATAAAAAACT
1 -AT-AAAAATT
26552490 ATAAAAA-T
1 ATAAAAATT
*
26552498 ATTTAAAATT
1 A-TAAAAATT
* **
26552508 AGAAAAAAA
1 ATAAAAATT
26552517 ATATAAAATCGT
1 ATA-AAAAT--T
*
26552529 A-AAAAAAT
1 ATAAAAATT
*
26552537 AAAAAATATAT
1 ATAAAA-AT-T
26552548 ATAAAAATT
1 ATAAAAATT
26552557 -TATAAAATT
1 ATA-AAAATT
*
26552566 GTAAGAAAATT
1 AT-A-AAAATT
*
26552577 ATAAAAAAT
1 ATAAAAATT
* *
26552586 GTAAAGAAAT
1 ATAAA-AATT
*
26552596 AT-AAAATCC
1 ATAAAAAT-T
26552605 ATAAAAA-T
1 ATAAAAATT
*
26552613 ATAAAACTT
1 ATAAAAATT
26552622 AT
1 AT
26552624 CGTTTTAAAA
Statistics
Matches: 128, Mismatches: 27, Indels: 38
0.66 0.14 0.20
Matches are distributed among these distances:
8 14 0.11
9 52 0.41
10 41 0.32
11 20 0.16
12 1 0.01
ACGTcount: A:0.63, C:0.03, G:0.04, T:0.30
Consensus pattern (9 bp):
ATAAAAATT
Found at i:26552563 original size:29 final size:30
Alignment explanation
Indices: 26552482--26552563 Score: 73
Period size: 29 Copynumber: 2.8 Consensus size: 30
26552472 AAATTTTAAT
* *
26552482 AAAAAACTATAAAAATATT-TAAAATTAGA
1 AAAAAAATATAAAAATATTATAAAAATAGA
** *
26552511 AAAAAAATAT-AAAATCGTAAAAAAATA-A
1 AAAAAAATATAAAAATATTATAAAAATAGA
*
26552539 AAAATATATATAAAAAT-TTATAAAA
1 AAAA-AAATATAAAAATATTATAAAA
26552564 TTGTAAGAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
28 11 0.26
29 26 0.62
30 5 0.12
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (30 bp):
AAAAAAATATAAAAATATTATAAAAATAGA
Found at i:26552584 original size:21 final size:19
Alignment explanation
Indices: 26552521--26552601 Score: 60
Period size: 20 Copynumber: 4.1 Consensus size: 19
26552511 AAAAAAATAT
*
26552521 AAAATCGTAAAAAAATA-AA
1 AAAAT-GTAAAAAATTATAA
*
26552540 AAATATATATAAAAATT-TATA
1 AAA-ATGTA-AAAAATTATA-A
*
26552561 AAATTGTAAGAAAATTATAA
1 AAAATGTAA-AAAATTATAA
26552581 AAAATGTAAAGAAA-TATAA
1 AAAATGTAAA-AAATTATAA
26552600 AA
1 AA
26552602 TCCATAAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 14
0.72 0.07 0.20
Matches are distributed among these distances:
19 14 0.28
20 30 0.60
21 6 0.12
ACGTcount: A:0.67, C:0.01, G:0.06, T:0.26
Consensus pattern (19 bp):
AAAATGTAAAAAATTATAA
Found at i:26552824 original size:17 final size:17
Alignment explanation
Indices: 26552791--26552822 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
26552781 GGTTAAGGGT
26552791 TTTTTTTATGTATTTTA
1 TTTTTTTATGTATTTTA
26552808 TTTTTTTATG-ATTTT
1 TTTTTTTATGTATTTT
26552823 TAGAATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.16, C:0.00, G:0.06, T:0.78
Consensus pattern (17 bp):
TTTTTTTATGTATTTTA
Found at i:26552865 original size:21 final size:21
Alignment explanation
Indices: 26552821--26552876 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
26552811 TTTTATGATT
* *
26552821 TTTAGAATTTTTA-ATAAATT
1 TTTAAAATTTTTATATAAATA
*
26552841 TTTAAAATTTTTATATTAATA
1 TTTAAAATTTTTATATAAATA
*
26552862 TTTAATATTTTTATA
1 TTTAAAATTTTTATA
26552877 ACTTTTATTG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 12 0.39
21 19 0.61
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (21 bp):
TTTAAAATTTTTATATAAATA
Found at i:26553250 original size:90 final size:87
Alignment explanation
Indices: 26552989--26553271 Score: 304
Period size: 90 Copynumber: 3.1 Consensus size: 87
26552979 TTAACGGTTA
* * *
26552989 AAGGACCTTTTTGATGCA-TTT-AATAGTTCAAGTATCCAATTAAGTGCAAAAAAAATTTTAAAG
1 AAGGA-CTTTTTGATGCATTTTGAA-AGTTCAAGTACCCAATTGAGTG--AAAAAAA---TAAGG
* *
26553052 GGCTTAATTGCTTTTTCTGAAAAGAGTTTG
59 GGCTTAATTGCTTTTTTTTAAAA-AGTTTG
*
26553082 AAGGACTTTTTGATGCATTTCGAAAGTTCAAGTACCCAATTGAGTGAAAAAAATAAGCAGTGGCT
1 AAGGACTTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGAAAAAAATAAG--G-GGCT
*
26553147 TAATTGCATTTTTTTAAAAAGTTTG
63 TAATTGCTTTTTTTTAAAAAGTTTG
* *
26553172 AGGGTCTTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGTAAAAAGAAT-AGGGGCTT
1 AAGGACTTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAGTG-AAAAA-AATAAGGGGCTT
* *
26553236 AATTGCTTCCTTTTTTTAAATGTTTG
64 AATTGCTT--TTTTTTAAAAAGTTTG
26553262 AA-GACTTTTT
1 AAGGACTTTTT
26553272 ACATCCTTAA
Statistics
Matches: 166, Mismatches: 15, Indels: 22
0.82 0.07 0.11
Matches are distributed among these distances:
88 15 0.09
89 8 0.05
90 65 0.39
91 34 0.20
92 15 0.09
93 27 0.16
94 2 0.01
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (87 bp):
AAGGACTTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGAAAAAAATAAGGGGCTTAA
TTGCTTTTTTTTAAAAAGTTTG
Found at i:26554995 original size:28 final size:28
Alignment explanation
Indices: 26554962--26555019 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
26554952 GTAATTAAAA
26554962 TCAATCATATAAATGAAGAAAAAAATTG
1 TCAATCATATAAATGAAGAAAAAAATTG
26554990 TCAATCATATAAATGAAGAAAAAAATTG
1 TCAATCATATAAATGAAGAAAAAAATTG
26555018 TC
1 TC
26555020 TTATAATTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.55, C:0.09, G:0.10, T:0.26
Consensus pattern (28 bp):
TCAATCATATAAATGAAGAAAAAAATTG
Found at i:26556023 original size:76 final size:78
Alignment explanation
Indices: 26555871--26556033 Score: 185
Period size: 76 Copynumber: 2.1 Consensus size: 78
26555861 TAAAAGTTTA
* * * ***
26555871 AGGGAAAAATAAAAAGTTTTGGGGGTTTTTAGGGGAGTAAAATTTTAGGAGAAAAGCGGAAGAGA
1 AGGGGAAATTAAAAAGTTTTGAGGGTTTTTAAAAGAGTAAAATTTTAGGAGAAAAGCGGAAGAGA
26555936 GTAAAATTTTT-G
66 GTAAAATTTTTGG
*
26555948 -GGGGAAATTAAAAAGTTTTGAGGGTTTTTAAAAGAGTAAAATTTTGAGG-G-AAAG-GTAATGG
1 AGGGGAAATTAAAAAGTTTTGAGGGTTTTTAAAAGAGTAAAATTTT-AGGAGAAAAGCGGAA--G
26556009 AAGAGTAAAA-TTTTGG
63 -AGAGTAAAATTTTTGG
26556025 AGGGGAAAT
1 AGGGGAAAT
26556034 ATTAAAAAAA
Statistics
Matches: 73, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
74 3 0.04
75 4 0.05
76 45 0.62
77 13 0.18
78 8 0.11
ACGTcount: A:0.40, C:0.01, G:0.31, T:0.28
Consensus pattern (78 bp):
AGGGGAAATTAAAAAGTTTTGAGGGTTTTTAAAAGAGTAAAATTTTAGGAGAAAAGCGGAAGAGA
GTAAAATTTTTGG
Found at i:26565997 original size:48 final size:48
Alignment explanation
Indices: 26565917--26566074 Score: 219
Period size: 48 Copynumber: 3.3 Consensus size: 48
26565907 AGGAAGGATA
* *
26565917 TGAAAAGAGTAAGTTAATATGACTCT-CTATGTGATATATGTTATGTAC
1 TGAAATGAGTAAGTTAATATGACTCTGC-ATGTGATATATGTTATGTAT
* *
26565965 TGAAATGAGTAAGTTAATATGACCCTGCATGTGATATCTGTTATGTAT
1 TGAAATGAGTAAGTTAATATGACTCTGCATGTGATATATGTTATGTAT
* * * *
26566013 TGAAATGAGTAAGTTAAAATAACTTTGTATGTGATATATGTTATGTAT
1 TGAAATGAGTAAGTTAATATGACTCTGCATGTGATATATGTTATGTAT
*
26566061 TGAAATAAGTAAGT
1 TGAAATGAGTAAGT
26566075 GATAACTCCT
Statistics
Matches: 98, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
48 97 0.99
49 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.20, T:0.38
Consensus pattern (48 bp):
TGAAATGAGTAAGTTAATATGACTCTGCATGTGATATATGTTATGTAT
Found at i:26573706 original size:27 final size:27
Alignment explanation
Indices: 26573666--26573735 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
26573656 CATTTCACAC
*
26573666 ATTTTACATCAGATTATAGAGCTTTAA
1 ATTTTACATCAGATTAGAGAGCTTTAA
*
26573693 ATTTTACATTAGATTAGAGAGCTTTAA
1 ATTTTACATCAGATTAGAGAGCTTTAA
26573720 ATTTTACATCAAGATT
1 ATTTTACATC-AGATT
26573736 TTCAATAAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 34 0.87
28 5 0.13
ACGTcount: A:0.37, C:0.10, G:0.11, T:0.41
Consensus pattern (27 bp):
ATTTTACATCAGATTAGAGAGCTTTAA
Found at i:26576336 original size:20 final size:20
Alignment explanation
Indices: 26576313--26576366 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
26576303 AGTTTTTCCC
*
26576313 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
26576333 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
26576353 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
26576367 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:26576348 original size:30 final size:30
Alignment explanation
Indices: 26576313--26576386 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
26576303 AGTTTTTCCC
26576313 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
26576343 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
26576373 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
26576387 TGGCTTAAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:26576376 original size:20 final size:20
Alignment explanation
Indices: 26576313--26576377 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
26576303 AGTTTTTCCC
* * * *
26576313 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
26576333 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
26576352 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
26576373 AGCTC
1 AGCTC
26576378 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:26588990 original size:15 final size:15
Alignment explanation
Indices: 26588955--26589006 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
26588945 TTAAGAATTT
*
26588955 TATTAAATTAT-ATA
1 TATTTAATTATAATA
26588969 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
26588983 TATTTAATAATAAT-
1 TATTTAATTATAATA
26588997 TATGTTAATT
1 TAT-TTAATT
26589007 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:26589102 original size:18 final size:17
Alignment explanation
Indices: 26589071--26589105 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26589061 ATTATTAAGA
26589071 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
26589088 ATTTTAATTATATTATAT
1 ATTTT-ATTAAATTATAT
26589106 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:26589113 original size:120 final size:120
Alignment explanation
Indices: 26588900--26589242 Score: 641
Period size: 120 Copynumber: 2.9 Consensus size: 120
26588890 AGCAATAACA
26588900 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
1 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
*
26588965 TATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGT
66 TATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTACAGT
26589020 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
1 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
* *
26589085 TATATTTTAATTATATTATATTTAATAATAATTATGTTATTTTATATTTTACAGT
66 TATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTACAGT
*
26589140 ATCATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
1 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
*
26589205 TATATTTTAATTAAAATATATTTAATAATAATTATGTT
66 TATATTTTAATTATAATATATTTAATAATAATTATGTT
26589243 TAAATATGAT
Statistics
Matches: 217, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 217 1.00
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (120 bp):
ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
TATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTACAGT
Found at i:26589208 original size:61 final size:61
Alignment explanation
Indices: 26588903--26589210 Score: 255
Period size: 61 Copynumber: 5.1 Consensus size: 61
26588893 AATAACAATC
26588903 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * * * * * * *
26588964 ATATATT-TTAATT-A-T-AATAT-ATTTAATAATAATTATGTTAATTTA-TATTTTA-TAGTAT
1 ATATATTATGATTTGAGTAAAT-TCATATAAGAAT-ATTA-ATT-ATTAAGAATTTTATTA-AAT
*
26589022 C
61 T
26589023 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * * * * * * * * * *
26589084 ATATATTTTAATTAT-ATTATATTTA-ATAATAATTATGTTATT-TT-A-TATTTTA-CAGTATC
1 ATATATTATGATT-TGAGTAAATTCATATAAGAA-TAT-TAATTATTAAGAATTTTATTA-AATT
*
26589143 ATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
26589204 ATATATT
1 ATATATT
26589211 TTAATTAAAA
Statistics
Matches: 184, Mismatches: 41, Indels: 44
0.68 0.15 0.16
Matches are distributed among these distances:
57 11 0.06
58 14 0.08
59 48 0.26
60 30 0.16
61 56 0.30
62 14 0.08
63 11 0.06
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
Found at i:26589219 original size:18 final size:17
Alignment explanation
Indices: 26589191--26589225 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26589181 ATTATTAAGA
*
26589191 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
26589208 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
26589226 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:26589339 original size:147 final size:148
Alignment explanation
Indices: 26589179--26589449 Score: 508
Period size: 147 Copynumber: 1.8 Consensus size: 148
26589169 ATAAGAATAT
*
26589179 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
26589244 AAATATGATTAAATTATTTATTATTGAT-ATTAATAATCTTATTAAAATTTAAATAAAATAATTT
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAAAATAATTT
26589308 ACCAAAACAAATTTCTGC
131 ACCAAAACAAATTTCTGC
26589326 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
26589391 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAAAA
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAAAA
26589450 ATAACAATAA
Statistics
Matches: 120, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
147 91 0.76
148 29 0.24
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (148 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAAAATAATTT
ACCAAAACAAATTTCTGC
Found at i:26589366 original size:18 final size:17
Alignment explanation
Indices: 26589338--26589372 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26589328 ATTATTAAGA
*
26589338 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
26589355 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
26589373 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:26589583 original size:44 final size:45
Alignment explanation
Indices: 26589534--26589628 Score: 129
Period size: 45 Copynumber: 2.1 Consensus size: 45
26589524 TTACACCTCT
* *
26589534 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
* ** *
26589578 ATTACATTCAACCAAATAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
26589623 ATTACA
1 ATTACA
26589629 CCTCTAATCC
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 17 0.39
45 27 0.61
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.36
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:26589628 original size:16 final size:16
Alignment explanation
Indices: 26589609--26589676 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
26589599 GATTTGCTAT
* *
26589609 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
26589625 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
26589641 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
26589657 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
26589673 TACA
1 TACA
26589677 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:26598242 original size:47 final size:47
Alignment explanation
Indices: 26598191--26598508 Score: 521
Period size: 47 Copynumber: 6.7 Consensus size: 47
26598181 TTAGGATTCT
* * *
26598191 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
*
26598238 ATGTGATGAATGTGAAAGTGTAATATATGTAATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGT-ATATATGTGATAAGGCCTAATGGCCG
26598286 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
26598333 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
26598380 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
26598427 ATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
26598474 ATGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
26598509 TCCCGAAGGG
Statistics
Matches: 257, Mismatches: 12, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
46 1 0.00
47 211 0.82
48 45 0.18
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:26598677 original size:37 final size:37
Alignment explanation
Indices: 26598627--26598779 Score: 270
Period size: 37 Copynumber: 4.1 Consensus size: 37
26598617 CCGAGCTCTA
26598627 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
26598664 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
26598701 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
* * * *
26598738 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
26598775 AAGAC
1 AAGAC
26598780 TTCGTAATAA
Statistics
Matches: 112, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 112 1.00
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
Found at i:26600094 original size:43 final size:43
Alignment explanation
Indices: 26600046--26600148 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
26600036 TTGGTTTTCA
26600046 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
26600089 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
26600132 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
26600149 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:26600165 original size:29 final size:30
Alignment explanation
Indices: 26600130--26600200 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 30
26600120 GTTGTGAGAT
* *
26600130 TGGCACTAAGTGT-GCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGGCGAG-TTGAAAGTACA
*
26600159 TGGCACTAAGTGTGGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGGCGAGTTGAAAGTACA
26600189 TGGCACTAAGTG
1 TGGCACTAAGTG
26600201 GTTTAGCGTG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
29 18 0.49
30 19 0.51
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.25
Consensus pattern (30 bp):
TGGCACTAAGTGTGGCGAGTTGAAAGTACA
Found at i:26600753 original size:40 final size:40
Alignment explanation
Indices: 26600519--26600739 Score: 268
Period size: 40 Copynumber: 5.5 Consensus size: 40
26600509 TTGAATGATG
* * * *
26600519 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCT-AGTGA-TATA
*
26600559 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
*
26600599 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
26600639 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
*** * *
26600679 TCCGTG-CTAAACCCCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCG-GACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
* * *
26600719 TCCGGGCTAGGTCCCGAAGAG
1 TCCGGACTAAGTTCCGAAGAG
26600740 TAATCATGCT
Statistics
Matches: 163, Mismatches: 14, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
39 1 0.01
40 147 0.90
41 8 0.05
42 7 0.04
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:26604155 original size:47 final size:47
Alignment explanation
Indices: 26604104--26604375 Score: 411
Period size: 47 Copynumber: 5.7 Consensus size: 47
26604094 TTAGGATTCT
* * *
26604104 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
26604151 ATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCG
26604200 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
26604247 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
26604294 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
26604341 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
26604376 TCCGAAGGGC
Statistics
Matches: 209, Mismatches: 13, Indels: 6
0.92 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 162 0.78
49 46 0.22
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:26604543 original size:37 final size:37
Alignment explanation
Indices: 26604493--26604645 Score: 270
Period size: 37 Copynumber: 4.1 Consensus size: 37
26604483 CCGAGCTCTA
26604493 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
26604530 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
26604567 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
* * * *
26604604 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
26604641 AAGAC
1 AAGAC
26604646 TTCGTAATAA
Statistics
Matches: 112, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 112 1.00
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
Found at i:26620715 original size:38 final size:37
Alignment explanation
Indices: 26620646--26620718 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 37
26620636 TTTTCATAAT
* *
26620646 TTCACTTTTTCACTTTTAATCACTATTCAATTCAAAA
1 TTCACTTTTCCACTTTTAATCAATATTCAATTCAAAA
26620683 TTCACTTTTCCA-TTTTCAAGTCAATATTCAATTCAA
1 TTCACTTTTCCACTTTT-AA-TCAATATTCAATTCAA
26620719 TTCCACACTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 4 0.12
37 13 0.41
38 15 0.47
ACGTcount: A:0.32, C:0.22, G:0.01, T:0.45
Consensus pattern (37 bp):
TTCACTTTTCCACTTTTAATCAATATTCAATTCAAAA
Found at i:26620733 original size:23 final size:22
Alignment explanation
Indices: 26620706--26620752 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 22
26620696 TTTCAAGTCA
26620706 ATATTCA-ATTCAATTCCACACTT
1 ATATTCATATTCAATT--ACACTT
26620729 ATATTCATTATTCAATTACACTT
1 ATATTCA-TATTCAATTACACTT
26620752 A
1 A
26620753 ATCGTTACAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 14 0.64
25 8 0.36
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.43
Consensus pattern (22 bp):
ATATTCATATTCAATTACACTT
Found at i:26620874 original size:23 final size:23
Alignment explanation
Indices: 26620848--26620946 Score: 153
Period size: 23 Copynumber: 4.3 Consensus size: 23
26620838 ATAAGTGCCA
*
26620848 CACTGATATGTAGCTGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
26620871 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* * *
26620894 CACTGAAATATAGTCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
26620917 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
26620940 CACTGAT
1 CACTGAT
26620947 CAATAACACT
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 69 1.00
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.22
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:26624046 original size:19 final size:19
Alignment explanation
Indices: 26624018--26624091 Score: 67
Period size: 19 Copynumber: 3.8 Consensus size: 19
26624008 TACAGGATTG
*
26624018 CACTTCGGTGCCTCTTTTA
1 CACTTCGGTGCCTCTGTTA
* *
26624037 CACTTTGGTGTCTCTGTTA
1 CACTTCGGTGCCTCTGTTA
** * * *
26624056 CACTTCATTGTCTTTGTTTG
1 CACTTCGGTGCCTCTG-TTA
26624076 CACTTCGGTGCCTCTG
1 CACTTCGGTGCCTCTG
26624092 ATTGCATAAT
Statistics
Matches: 42, Mismatches: 12, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
19 28 0.67
20 14 0.33
ACGTcount: A:0.09, C:0.27, G:0.19, T:0.45
Consensus pattern (19 bp):
CACTTCGGTGCCTCTGTTA
Found at i:26624096 original size:20 final size:20
Alignment explanation
Indices: 26624013--26624097 Score: 66
Period size: 19 Copynumber: 4.3 Consensus size: 20
26624003 GCTTGTACAG
26624013 GATTGCACTTCGGTGCCTCT
1 GATTGCACTTCGGTGCCTCT
* * * *
26624033 -TTTACACTTTGGTGTCTCT
1 GATTGCACTTCGGTGCCTCT
* ** * *
26624052 G-TTACACTTCATTGTCTTT
1 GATTGCACTTCGGTGCCTCT
*
26624071 GTTTGCACTTCGGTGCCTCT
1 GATTGCACTTCGGTGCCTCT
26624091 GATTGCA
1 GATTGCA
26624098 TAATTGTGCC
Statistics
Matches: 49, Mismatches: 14, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
19 30 0.61
20 19 0.39
ACGTcount: A:0.12, C:0.25, G:0.20, T:0.44
Consensus pattern (20 bp):
GATTGCACTTCGGTGCCTCT
Found at i:26630397 original size:16 final size:16
Alignment explanation
Indices: 26630376--26630408 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
26630366 CTGAAAACCA
*
26630376 GATTGGTTAAAATTTG
1 GATTGGTTAAAAATTG
26630392 GATTGGTTAAAAATTG
1 GATTGGTTAAAAATTG
26630408 G
1 G
26630409 CATGGATGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.27, T:0.39
Consensus pattern (16 bp):
GATTGGTTAAAAATTG
Found at i:26632231 original size:15 final size:15
Alignment explanation
Indices: 26632207--26632237 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26632197 TTTATAACAT
*
26632207 GGTATTACCAAATCA
1 GGTATGACCAAATCA
26632222 GGTATGACCAAATCA
1 GGTATGACCAAATCA
26632237 G
1 G
26632238 CTGCAACATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.23
Consensus pattern (15 bp):
GGTATGACCAAATCA
Found at i:26635914 original size:44 final size:44
Alignment explanation
Indices: 26635864--26635953 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
26635854 AATGTGCATT
26635864 AATTGCTTCCTTCTATCGTTAGCTTAGCAAGTAAGAATATTATA
1 AATTGCTTCCTTCTATCGTTAGCTTAGCAAGTAAGAATATTATA
26635908 AATTGCTTCCTTCTATCGTTAGCTTAGCAAGTAAGAATATTATA
1 AATTGCTTCCTTCTATCGTTAGCTTAGCAAGTAAGAATATTATA
26635952 AA
1 AA
26635954 ATGAAAAATT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (44 bp):
AATTGCTTCCTTCTATCGTTAGCTTAGCAAGTAAGAATATTATA
Found at i:26644106 original size:50 final size:50
Alignment explanation
Indices: 26643982--26644228 Score: 201
Period size: 50 Copynumber: 4.8 Consensus size: 50
26643972 GATAATAACA
* * * ** * * *
26643982 TGCCAAAGCCATGTCCCAGACGTGGTCTTACATGAGATGTTTCTTGAAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-ATCGG
* * * **
26644031 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * * ** *
26644081 TGCCTATGCTATGTCCCAGACATGGTCTTGCGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * *
26644131 TGCCAACGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GG
* *
26644187 TGCCAATGCCATGTCCCAGACATGGTCTTAGATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
26644229 TTACCCAAAT
Statistics
Matches: 157, Mismatches: 33, Indels: 9
0.79 0.17 0.05
Matches are distributed among these distances:
48 2 0.01
49 35 0.22
50 79 0.50
53 2 0.01
56 39 0.25
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:26644549 original size:30 final size:30
Alignment explanation
Indices: 26644515--26644571 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
26644505 TCATTGACTC
26644515 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * *
26644545 AAACTTTTGCATAATTACACTTTTGCC
1 AAACTTTGGAAAAATTACAATTTTGCC
26644572 TCAAAGCTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.33, C:0.21, G:0.09, T:0.37
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:26645650 original size:21 final size:21
Alignment explanation
Indices: 26645611--26645650 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
26645601 AAGATTTATC
* *
26645611 AAAATTAGTAAGATTTTTGGG
1 AAAATTAGTAAAATATTTGGG
*
26645632 AAAATTCGTAAAATATTTG
1 AAAATTAGTAAAATATTTG
26645651 TAACTGATTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.03, G:0.17, T:0.38
Consensus pattern (21 bp):
AAAATTAGTAAAATATTTGGG
Found at i:26651104 original size:9 final size:9
Alignment explanation
Indices: 26651090--26651167 Score: 102
Period size: 9 Copynumber: 8.7 Consensus size: 9
26651080 TTTGGTTAAA
26651090 AATTAACCG
1 AATTAACCG
*
26651099 AATTAACCA
1 AATTAACCG
26651108 AATTAACCG
1 AATTAACCG
*
26651117 AATTACCCG
1 AATTAACCG
*
26651126 AATTAACAG
1 AATTAACCG
*
26651135 AATTACCCG
1 AATTAACCG
*
26651144 AATTACCCG
1 AATTAACCG
*
26651153 AATTAACCT
1 AATTAACCG
26651162 AATTAA
1 AATTAA
26651168 ATCATACATA
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 60 1.00
ACGTcount: A:0.45, C:0.23, G:0.08, T:0.24
Consensus pattern (9 bp):
AATTAACCG
Found at i:26651121 original size:27 final size:27
Alignment explanation
Indices: 26651090--26651167 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
26651080 TTTGGTTAAA
*
26651090 AATTAACCGAATTAACCAAATTAACCG
1 AATTACCCGAATTAACCAAATTAACCG
*
26651117 AATTACCCGAATTAA-CAGAATTACCCG
1 AATTACCCGAATTAACCA-AATTAACCG
*
26651144 AATTACCCGAATTAACCTAATTAA
1 AATTACCCGAATTAACCAAATTAA
26651168 ATCATACATA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
26 2 0.04
27 42 0.93
28 1 0.02
ACGTcount: A:0.45, C:0.23, G:0.08, T:0.24
Consensus pattern (27 bp):
AATTACCCGAATTAACCAAATTAACCG
Found at i:26651233 original size:20 final size:21
Alignment explanation
Indices: 26651205--26651248 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
26651195 ACTTTTGTAC
*
26651205 TTTAGTTTTAGTT-TTAGAAT
1 TTTAGTTTTAGTTATTAAAAT
* *
26651225 TTTATTTTTATTTATTAAAAT
1 TTTAGTTTTAGTTATTAAAAT
26651246 TTT
1 TTT
26651249 TGTAATTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.66
Consensus pattern (21 bp):
TTTAGTTTTAGTTATTAAAAT
Found at i:26651575 original size:23 final size:23
Alignment explanation
Indices: 26651545--26651597 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
26651535 GCACACCCCT
*
26651545 ATGCATAATAATAGTATATCGGC
1 ATGCATAATAATAGTATATCAGC
*
26651568 ATGCATAATAATAGTATATTAGC
1 ATGCATAATAATAGTATATCAGC
26651591 ATGCATA
1 ATGCATA
26651598 TATATGGGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.42, C:0.11, G:0.15, T:0.32
Consensus pattern (23 bp):
ATGCATAATAATAGTATATCAGC
Found at i:26658704 original size:14 final size:14
Alignment explanation
Indices: 26658685--26658711 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26658675 TTTTCTTGCG
26658685 CACTTGTATTTTAC
1 CACTTGTATTTTAC
26658699 CACTTGTATTTTA
1 CACTTGTATTTTA
26658712 TTTAATAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.19, G:0.07, T:0.52
Consensus pattern (14 bp):
CACTTGTATTTTAC
Done.