Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60343961
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 596159 characters in sequence are not A, C, G, or T
File 87 of 204
Found at i:27001479 original size:17 final size:17
Alignment explanation
Indices: 27001457--27001490 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
27001447 TTTCTTAGTC
27001457 AAACTATTTCTTGTTTA
1 AAACTATTTCTTGTTTA
27001474 AAACTATTTCTTGTTTA
1 AAACTATTTCTTGTTTA
27001491 GATTAATTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.53
Consensus pattern (17 bp):
AAACTATTTCTTGTTTA
Found at i:27002428 original size:21 final size:19
Alignment explanation
Indices: 27002390--27002429 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
27002380 ATAAATGGTT
*
27002390 CTTGAAATGGAAGTTTTGG
1 CTTGAAATGCAAGTTTTGG
27002409 CTTGAAATGCACATGTTTTGG
1 CTTGAAATGCA-A-GTTTTGG
27002430 ATAGGGTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 1 0.06
21 7 0.39
ACGTcount: A:0.25, C:0.10, G:0.28, T:0.38
Consensus pattern (19 bp):
CTTGAAATGCAAGTTTTGG
Found at i:27027661 original size:21 final size:22
Alignment explanation
Indices: 27027626--27027667 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
27027616 CTTTTATTGG
27027626 TGCACGATGAACTACAAGCACA
1 TGCACGATGAACTACAAGCACA
* *
27027648 TGCAC-ATGTACTACTAGCAC
1 TGCACGATGAACTACAAGCAC
27027668 CAACTGGTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.36, C:0.29, G:0.17, T:0.19
Consensus pattern (22 bp):
TGCACGATGAACTACAAGCACA
Found at i:27034856 original size:50 final size:50
Alignment explanation
Indices: 27034793--27035072 Score: 273
Period size: 51 Copynumber: 5.5 Consensus size: 50
27034783 TTCGATACAT
*
27034793 GTAGTAGCCTTCACATAGTACTACACACATGATCAAGTTTTACGGTTCAC
1 GTAGTAGCCTTCACATAGTACTACACACATGACCAAGTTTTACGGTTCAC
* *
27034843 GTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGGTTCAC
1 GTAGTAGCCTTCACATAGTACTACACACATGACCAAGTTTTACGGTTCAC
* *
27034893 GTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTCTT--GGTACAC
1 GTAGTAGCCTTCACATAGTACTACACACATGACC-AAG-TT-TTACGGTTCAC
* * * * ** * *
27034944 ATTGTAGCCTTGACTTAGTACTACACATTTGACCATCATTTATTA--ATTCAC
1 GTAGTAGCCTTCACATAGTACTACACACATGACCA--AGTT-TTACGGTTCAC
* * * *
27034995 GTAGTAGCCTTCACACAGTACTACACATATGACCAAAGCTTCT-CGGTACAC
1 GTAGTAGCCTTCACATAGTACTACACACATGACC-AAG-TTTTACGGTTCAC
* * *
27035046 ATAGTAGCCTTCACTTAGTACAACACA
1 GTAGTAGCCTTCACATAGTACTACACA
27035073 TGTGACCATT
Statistics
Matches: 193, Mismatches: 27, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
50 85 0.44
51 102 0.53
52 4 0.02
53 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (50 bp):
GTAGTAGCCTTCACATAGTACTACACACATGACCAAGTTTTACGGTTCAC
Found at i:27035018 original size:102 final size:102
Alignment explanation
Indices: 27034793--27035088 Score: 350
Period size: 102 Copynumber: 2.9 Consensus size: 102
27034783 TTCGATACAT
* * * * *
27034793 GTAGTAGCCTTCACATAGTACTACACACATGATC-AAG-TTTTACGGTTCACGTAGTAGCCTTCA
1 GTAGTAGCCTTCACACAGTACTACACACATGACCAAAGCTTCT-CGGTACACATAGTAGCCTTCA
* * * * * *
27034856 CATAGTACTACACACGTGATCA--AGTT-TTACGGTTCAC
65 CTTAGTACAACACATGTGACCATCATTTATTA--ATTCAC
* * * * *
27034893 GTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTCTTGGTACACATTGTAGCCTTGAC
1 GTAGTAGCCTTCACACAGTACTACACACATGACCAAAGCTTCTCGGTACACATAGTAGCCTTCAC
* *
27034958 TTAGTACTACACATTTGACCATCATTTATTAATTCAC
66 TTAGTACAACACATGTGACCATCATTTATTAATTCAC
*
27034995 GTAGTAGCCTTCACACAGTACTACACATATGACCAAAGCTTCTCGGTACACATAGTAGCCTTCAC
1 GTAGTAGCCTTCACACAGTACTACACACATGACCAAAGCTTCTCGGTACACATAGTAGCCTTCAC
*
27035060 TTAGTACAACACATGTGACCATTATTTAT
66 TTAGTACAACACATGTGACCATCATTTAT
27035089 ATATGTAACA
Statistics
Matches: 168, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
100 32 0.19
101 37 0.22
102 93 0.55
103 3 0.02
104 3 0.02
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (102 bp):
GTAGTAGCCTTCACACAGTACTACACACATGACCAAAGCTTCTCGGTACACATAGTAGCCTTCAC
TTAGTACAACACATGTGACCATCATTTATTAATTCAC
Found at i:27036311 original size:41 final size:40
Alignment explanation
Indices: 27036248--27036605 Score: 374
Period size: 41 Copynumber: 8.6 Consensus size: 40
27036238 CTTTGAATGT
* * * *
27036248 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCGTTGATCAAA
1 AAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGAT-TAA
* * *
27036289 AAGGGGTTGCTATGTGTTGATTCCCCGTATCATTGATTAT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTAA
* *
27036329 AAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTTA
1 AAGG-GGTTGCTAAGTGCTGATTCC-CCGTATCATTGA-T-TAA
* *
27036373 AAGGGGTTGCTATGTGCTGATTCCCCGTATCATTGATTAT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTAA
* *
27036413 AAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGA
1 AAGG-GGTTGCTAAGTGCTGATTCC-CCGTATCATTGA-T-TAA
* *
27036457 AAGGGGTTGCTATGTGCTGATTCCCCGTATCATTGATTAT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTAA
* * * * *
27036497 AAGGTGCTTGCTAAGTGCTAATTCCATCGTATCCTTGATTGGGA
1 AAGG-GGTTGCTAAGTGCTGATTCC-CCGTATCATTGATT--AA
* * *
27036541 AAGGGGTTGCTATGTGCTGATTCCCTGTATCATTGATTAT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTAA
*
27036581 AAGGTGGTTGCTAAGTGTTGATTCC
1 AAGG-GGTTGCTAAGTGCTGATTCC
27036606 ATAGGGATCC
Statistics
Matches: 263, Mismatches: 41, Indels: 26
0.80 0.12 0.08
Matches are distributed among these distances:
40 19 0.07
41 106 0.40
42 67 0.25
43 57 0.22
44 14 0.05
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.35
Consensus pattern (40 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTAA
Found at i:27036607 original size:84 final size:84
Alignment explanation
Indices: 27036247--27036606 Score: 573
Period size: 84 Copynumber: 4.3 Consensus size: 84
27036237 TCTTTGAATG
* * * *** *
27036247 TAAGG-GGTTGCTAAGTGCAGATTCC-CCGAATCGTTGA-TCAAAAAGGGGTTGCTATGTGTTGA
1 TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAGGGGTTGCTATGTGCTGA
27036309 TTCCCCGTATCATTGATTA
66 TTCCCCGTATCATTGATTA
*
27036328 TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTTAAAGGGGTTGCTATGTGCTGA
1 TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAGGGGTTGCTATGTGCTGA
27036393 TTCCCCGTATCATTGATTA
66 TTCCCCGTATCATTGATTA
27036412 TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAGGGGTTGCTATGTGCTGA
1 TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAGGGGTTGCTATGTGCTGA
27036477 TTCCCCGTATCATTGATTA
66 TTCCCCGTATCATTGATTA
* * * *
27036496 TAAGGTGCTTGCTAAGTGCTAATTCCATCGTATCCTTGATTGGGAAAGGGGTTGCTATGTGCTGA
1 TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAGGGGTTGCTATGTGCTGA
*
27036561 TTCCCTGTATCATTGATTA
66 TTCCCCGTATCATTGATTA
*
27036580 TAAGGTGGTTGCTAAGTGTTGATTCCA
1 TAAGGTGGTTGCTAAGTGCTGATTCCA
27036607 TAGGGATCCT
Statistics
Matches: 260, Mismatches: 16, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
81 5 0.02
82 19 0.07
83 10 0.04
84 226 0.87
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.36
Consensus pattern (84 bp):
TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAGGGGTTGCTATGTGCTGA
TTCCCCGTATCATTGATTA
Found at i:27051155 original size:35 final size:35
Alignment explanation
Indices: 27051109--27051222 Score: 158
Period size: 35 Copynumber: 3.3 Consensus size: 35
27051099 TTTTCTTTTT
*
27051109 ATGAGGTATTGGCGTTGT-GTCGAGATGTTAAATGA
1 ATGAGGTATTGGCGTTGTGGT-GGGATGTTAAATGA
* *
27051144 ATGAGGTATTGGCATTGTGGTGGGATGTTAATTGA
1 ATGAGGTATTGGCGTTGTGGTGGGATGTTAAATGA
* *
27051179 ATGAGGAATTGTCGTTGTGGTGGGATGTTAAATGA
1 ATGAGGTATTGGCGTTGTGGTGGGATGTTAAATGA
*
27051214 ATAAGGTAT
1 ATGAGGTAT
27051223 GCGAAATGTG
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
35 67 0.97
36 2 0.03
ACGTcount: A:0.26, C:0.04, G:0.35, T:0.35
Consensus pattern (35 bp):
ATGAGGTATTGGCGTTGTGGTGGGATGTTAAATGA
Found at i:27053561 original size:85 final size:86
Alignment explanation
Indices: 27053399--27053605 Score: 224
Period size: 85 Copynumber: 2.4 Consensus size: 86
27053389 AGCTCGTACA
* * * * *
27053399 ATGCCAACGTCCTAGACGA-GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAAGG
1 ATGCCAATGTCCCAGAC-ATGGTCTTACACGAAATCAAATATCGATGCCAATGTCCCAGACAAGG
*
27053463 TCTTACACGAAA--TCATATACG
65 TCTTACACGAAATCTCAAAT-CG
* * *
27053484 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCATATA-CGATGTCAATGTCCCAGACATGGT
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATATCGATGCCAATGTCCCAGACAAGGT
*
27053548 CTTACATGTAAATCTCAAATCG
66 CTTACACG-AAATCTCAAATCG
* * * * *
27053570 ATGGCAATGTCCCAAACGTGGTTTTACACAAAATCA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCA
27053606 CACATCAAAA
Statistics
Matches: 103, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
84 29 0.28
85 36 0.35
86 33 0.32
87 5 0.05
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (86 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATATCGATGCCAATGTCCCAGACAAGGT
CTTACACGAAATCTCAAATCG
Found at i:27053597 original size:44 final size:42
Alignment explanation
Indices: 27053399--27053605 Score: 220
Period size: 42 Copynumber: 4.9 Consensus size: 42
27053389 AGCTCGTACA
* * * *
27053399 ATGCCAACGTCCTAGACGA-GGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGAC-ATGGTCTTACACGAAATCAAATA-CG
* * *
27053442 ATGCCACTGTCCCAGACAAGGTCTTACACGAAATCATATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATACG
*
27053484 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCATATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATACG
* *
27053526 ATGTCAATGTCCCAGACATGGTCTTACATGTAAATCTCAAAT-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AAA--TCAAATACG
* * * * *
27053570 ATGGCAATGTCCCAAACGTGGTTTTACACAAAATCA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCA
27053606 CACATCAAAA
Statistics
Matches: 143, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
41 3 0.02
42 71 0.50
43 38 0.27
44 26 0.18
45 5 0.03
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATACG
Found at i:27053604 original size:86 final size:85
Alignment explanation
Indices: 27053430--27053605 Score: 212
Period size: 86 Copynumber: 2.1 Consensus size: 85
27053420 TCTTACATGT
* *
27053430 AATCAAATATCGATGCCACTGTCCCAGACAAGGTCTTACACGAAATCATATACGATGCCAATGTC
1 AATCAAATATCGATGCCAATGTCCCAGACAAGGTCTTACACGAAATCAAATACGATGCCAATGTC
* *
27053495 CCAGACATGGTCTTACACGA
66 CCAAACATGGTCTTACACAA
* * * * *
27053515 AATCATATA-CGATGTCAATGTCCCAGACATGGTCTTACATGTAAATCTCAAAT-CGATGGCAAT
1 AATCAAATATCGATGCCAATGTCCCAGACAAGGTCTTACACG-AAA--TCAAATACGATGCCAAT
* *
27053578 GTCCCAAACGTGGTTTTACACAA
63 GTCCCAAACATGGTCTTACACAA
27053601 AATCA
1 AATCA
27053606 CACATCAAAA
Statistics
Matches: 77, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
84 28 0.36
85 11 0.14
86 33 0.43
87 5 0.06
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (85 bp):
AATCAAATATCGATGCCAATGTCCCAGACAAGGTCTTACACGAAATCAAATACGATGCCAATGTC
CCAAACATGGTCTTACACAA
Found at i:27058088 original size:32 final size:33
Alignment explanation
Indices: 27058007--27058236 Score: 286
Period size: 32 Copynumber: 6.9 Consensus size: 33
27057997 TTCACTTGTC
* * * *
27058007 TTTTCTTGCAGGGAATATTTCTTGTTCACGCATTA
1 TTTTCTTGCAGGGAATCTCTCCTGTTCA--CATCA
* *
27058042 TTTTGTTGCAGGGAATCTTTCCTGTTCACATCA
1 TTTTCTTGCAGGGAATCTCTCCTGTTCACATCA
* *
27058075 -TTTCTTGCAGGGAATCTCTCCTATTCACGCATTA
1 TTTTCTTGCAGGGAATCTCTCCTGTTCA--CATCA
*
27058109 TTTTGTTGCAGGGAATCTCTCCTGTTCACATCA
1 TTTTCTTGCAGGGAATCTCTCCTGTTCACATCA
*
27058142 -TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTA
1 TTTTCTTGCAGGGAATCTCTCCTGTTCA--CATCA
*
27058176 TTTTGTTGCAGGGAATCTCTCCTGTTCACATCA
1 TTTTCTTGCAGGGAATCTCTCCTGTTCACATCA
27058209 -TTTCTTGCAGGGAATCTCTCCTGTTCAC
1 TTTTCTTGCAGGGAATCTCTCCTGTTCAC
27058237 GCATTATTTC
Statistics
Matches: 173, Mismatches: 16, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
32 77 0.45
33 12 0.07
34 8 0.05
35 76 0.44
ACGTcount: A:0.18, C:0.24, G:0.17, T:0.40
Consensus pattern (33 bp):
TTTTCTTGCAGGGAATCTCTCCTGTTCACATCA
Found at i:27058116 original size:67 final size:67
Alignment explanation
Indices: 27058008--27058245 Score: 431
Period size: 67 Copynumber: 3.6 Consensus size: 67
27057998 TCACTTGTCT
* * * *
27058008 TTTCTTGCAGGGAATATTTCTTGTTCACGCATTATTTTGTTGCAGGGAATCTTTCCTGTTCACAT
1 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACAT
27058073 CA
66 CA
*
27058075 TTTCTTGCAGGGAATCTCTCCTATTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACAT
1 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACAT
27058140 CA
66 CA
27058142 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACAT
1 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACAT
27058207 CA
66 CA
27058209 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTT
1 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTT
27058246 CTTTTTGGAC
Statistics
Matches: 165, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 165 1.00
ACGTcount: A:0.18, C:0.24, G:0.17, T:0.41
Consensus pattern (67 bp):
TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACAT
CA
Found at i:27061077 original size:20 final size:23
Alignment explanation
Indices: 27061042--27061086 Score: 69
Period size: 20 Copynumber: 2.1 Consensus size: 23
27061032 GAGCAAATCG
27061042 TTGATTCTATTTCTTTTTTG-AT
1 TTGATTCTATTTCTTTTTTGTAT
27061064 TTGA-TCTA-TTCTTTTTTGTAT
1 TTGATTCTATTTCTTTTTTGTAT
27061085 TT
1 TT
27061087 CTCTTTTTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 10 0.45
21 8 0.36
22 4 0.18
ACGTcount: A:0.13, C:0.09, G:0.09, T:0.69
Consensus pattern (23 bp):
TTGATTCTATTTCTTTTTTGTAT
Found at i:27065843 original size:49 final size:49
Alignment explanation
Indices: 27065781--27066500 Score: 1277
Period size: 49 Copynumber: 14.9 Consensus size: 49
27065771 TAGTATGGCG
27065781 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
27065830 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
27065879 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
27065928 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
27065977 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
27066024 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
27066073 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
27066120 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
27066169 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
27066218 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
27066265 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
27066314 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
27066363 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* *
27066410 TAATGGCCGATGTGATGAATGTGAAAGTGTATATAT-T-TGA-CAGGGC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* * * *
27066456 TGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 T-AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
27066501 TCCCGAAGGG
Statistics
Matches: 650, Mismatches: 9, Indels: 25
0.95 0.01 0.04
Matches are distributed among these distances:
46 7 0.01
47 222 0.34
48 3 0.00
49 418 0.64
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
Found at i:27066035 original size:96 final size:97
Alignment explanation
Indices: 27065781--27066500 Score: 1260
Period size: 96 Copynumber: 7.5 Consensus size: 97
27065771 TAGTATGGCG
*
27065781 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGAT
27065846 GAATGTGAAAGTGTATATATATGTGATAAGGCC
65 GAATGTGAAAGTGTATATATATGTGATAAGGCC
27065879 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGAT
27065944 GAATGTGAAAGTGTATATATATGTGATAAGGCC
65 GAATGTGAAAGTGTATATATATGTGATAAGGCC
27065977 TAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
27066041 AATGTGAAAGTGTATATATATGTGATAAGGCC
66 AATGTGAAAGTGTATATATATGTGATAAGGCC
27066073 TAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
27066137 AATGTGAAAGTGTATATATATGTGATAAGGCC
66 AATGTGAAAGTGTATATATATGTGATAAGGCC
27066169 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGAT
27066234 GAATGTGAAAGTG--TATATATGTGATAAGGCC
65 GAATGTGAAAGTGTATATATATGTGATAAGGCC
27066265 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGAT
27066330 GAATGTGAAAGTGTATATATATGTGATAAGGCC
65 GAATGTGAAAGTGTATATATATGTGATAAGGCC
27066363 TAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
27066427 AATGTGAAAGTGTATATAT-T-TGA-CAGGGC
66 AATGTGAAAGTGTATATATATGTGATAAGGCC
* * * * *
27066456 TGAGTGGCCAACGTGATGGATGTGAAAGTG-TATAAATGTGATAAG
1 T-AATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAG
27066501 TCCCGAAGGG
Statistics
Matches: 609, Mismatches: 8, Indels: 14
0.97 0.01 0.02
Matches are distributed among these distances:
93 5 0.01
94 41 0.07
95 1 0.00
96 342 0.56
98 220 0.36
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (97 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
AATGTGAAAGTGTATATATATGTGATAAGGCC
Found at i:27066075 original size:145 final size:144
Alignment explanation
Indices: 27065781--27066500 Score: 1261
Period size: 145 Copynumber: 5.0 Consensus size: 144
27065771 TAGTATGGCG
*
27065781 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
27065846 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
64 GAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
27065911 ATATATGTGATAAGGCC
128 ATATATGTGATAAGGCC
27065928 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
27065993 GAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
64 GAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
27066057 TATATGTGATAAGGCC
129 TATATGTGATAAGGCC
27066073 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
27066138 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
66 ATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
27066203 ATATGTGATAAGGCC
130 ATATGTGATAAGGCC
27066218 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
27066283 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
66 ATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
27066348 ATATGTGATAAGGCC
130 ATATGTGATAAGGCC
27066363 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
27066428 ATGTGAAAGTG-TATATATTTGA-CAGGGCTGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-
66 ATGTGAAAGTGATATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATAT
27066490 A-ATGTGATAAG
130 ATATGTGATAAG
27066501 TCCCGAAGGG
Statistics
Matches: 562, Mismatches: 8, Indels: 12
0.97 0.01 0.02
Matches are distributed among these distances:
141 10 0.02
142 6 0.01
143 85 0.15
145 384 0.68
147 77 0.14
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (144 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCC
Found at i:27072451 original size:20 final size:22
Alignment explanation
Indices: 27072421--27072464 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
27072411 ATAAAAAGAG
27072421 AAATACAAAAA-AGAATAG-ATC
1 AAATACAAAAAGA-AATAGAATC
27072442 AAAT-CAAAAAGAAATAGAATC
1 AAATACAAAAAGAAATAGAATC
27072463 AA
1 AA
27072465 CGATTTGCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.68, C:0.09, G:0.09, T:0.14
Consensus pattern (22 bp):
AAATACAAAAAGAAATAGAATC
Found at i:27075373 original size:67 final size:67
Alignment explanation
Indices: 27075265--27075455 Score: 355
Period size: 67 Copynumber: 2.9 Consensus size: 67
27075255 GTCCAAAAAG
27075265 AAATAATGCGTGAACAGGAGAGATTCCCTGCAAGAAATGATGTGAACAGGAGAGATTCCCTGCAA
1 AAATAATGCGTGAACAGGAGAGATTCCCTGCAAGAAATGATGTGAACAGGAGAGATTCCCTGCAA
27075330 CA
66 CA
* *
27075332 AAATAATGCGTGAACAGGAGAGATTCCCTACAGGAAATGATGTGAACAGGAGAGATTCCCTGCAA
1 AAATAATGCGTGAACAGGAGAGATTCCCTGCAAGAAATGATGTGAACAGGAGAGATTCCCTGCAA
27075397 CA
66 CA
*
27075399 AAATAATGCGTGAACAGGAGAGATTCCCTGCAAGAAATGATGTGAACAGGAAAGATT
1 AAATAATGCGTGAACAGGAGAGATTCCCTGCAAGAAATGATGTGAACAGGAGAGATT
27075456 TTTCCCTTCC
Statistics
Matches: 119, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 119 1.00
ACGTcount: A:0.40, C:0.16, G:0.26, T:0.18
Consensus pattern (67 bp):
AAATAATGCGTGAACAGGAGAGATTCCCTGCAAGAAATGATGTGAACAGGAGAGATTCCCTGCAA
CA
Found at i:27075462 original size:35 final size:32
Alignment explanation
Indices: 27075274--27075455 Score: 247
Period size: 32 Copynumber: 5.5 Consensus size: 32
27075264 GAAATAATGC
27075274 GTGAACAGGAGAGATTCCCTGCAAGAAATGAT
1 GTGAACAGGAGAGATTCCCTGCAAGAAATGAT
* *
27075306 GTGAACAGGAGAGATTCCCTGCAACAAAATAAT
1 GTGAACAGGAGAGATTCCCTGCAA-GAAATGAT
* *
27075339 GCGTGAACAGGAGAGATTCCCTACAGGAAATGAT
1 --GTGAACAGGAGAGATTCCCTGCAAGAAATGAT
* *
27075373 GTGAACAGGAGAGATTCCCTGCAACAAAATAAT
1 GTGAACAGGAGAGATTCCCTGCAA-GAAATGAT
27075406 GCGTGAACAGGAGAGATTCCCTGCAAGAAATGAT
1 --GTGAACAGGAGAGATTCCCTGCAAGAAATGAT
*
27075440 GTGAACAGGAAAGATT
1 GTGAACAGGAGAGATT
27075456 TTTCCCTTCC
Statistics
Matches: 131, Mismatches: 13, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
32 61 0.47
33 12 0.09
34 12 0.09
35 46 0.35
ACGTcount: A:0.39, C:0.16, G:0.26, T:0.18
Consensus pattern (32 bp):
GTGAACAGGAGAGATTCCCTGCAAGAAATGAT
Found at i:27085129 original size:15 final size:16
Alignment explanation
Indices: 27085098--27085130 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
27085088 AGATCTCTAA
27085098 CGAGCTTCCAAAATAAT
1 CGAGCTTCC-AAATAAT
27085115 CGAGCTTCC-AATAAT
1 CGAGCTTCCAAATAAT
27085130 C
1 C
27085131 TATAAAACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.27, G:0.12, T:0.24
Consensus pattern (16 bp):
CGAGCTTCCAAATAAT
Found at i:27101858 original size:13 final size:13
Alignment explanation
Indices: 27101842--27101881 Score: 64
Period size: 12 Copynumber: 3.1 Consensus size: 13
27101832 AAAACAGATC
27101842 AAAAAAAATTCGAA
1 AAAAAAAATTCG-A
27101856 AAAAAAAATT-GA
1 AAAAAAAATTCGA
27101868 AAAAAAAATTCGA
1 AAAAAAAATTCGA
27101881 A
1 A
27101882 GTATTAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 11 0.44
13 4 0.16
14 10 0.40
ACGTcount: A:0.72, C:0.05, G:0.07, T:0.15
Consensus pattern (13 bp):
AAAAAAAATTCGA
Found at i:27106380 original size:13 final size:13
Alignment explanation
Indices: 27106362--27106401 Score: 73
Period size: 13 Copynumber: 3.2 Consensus size: 13
27106352 AAACAAAATC
27106362 AAAAAAAAATTCG
1 AAAAAAAAATTCG
27106375 AAAAAAAAATT-G
1 AAAAAAAAATTCG
27106387 AAAAAAAAATTCG
1 AAAAAAAAATTCG
27106400 AA
1 AA
27106402 GTATTAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 12 0.46
13 14 0.54
ACGTcount: A:0.72, C:0.05, G:0.07, T:0.15
Consensus pattern (13 bp):
AAAAAAAAATTCG
Found at i:27109469 original size:28 final size:26
Alignment explanation
Indices: 27109433--27109507 Score: 96
Period size: 26 Copynumber: 2.8 Consensus size: 26
27109423 GTTCCGCATG
27109433 GTCAATTCGCACACTTAAGTGCATCACA
1 GTCAATTCGCACACTT-AGTGCA-CACA
* * *
27109461 TTCATTTCGCACACTTAGTGCACATA
1 GTCAATTCGCACACTTAGTGCACACA
*
27109487 GTCAAATCGCACACTTAGTGC
1 GTCAATTCGCACACTTAGTGC
27109508 TGTACAATTT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 21 0.51
27 6 0.15
28 14 0.34
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (26 bp):
GTCAATTCGCACACTTAGTGCACACA
Found at i:27109503 original size:26 final size:26
Alignment explanation
Indices: 27109392--27109507 Score: 92
Period size: 26 Copynumber: 4.3 Consensus size: 26
27109382 CTGGAATGCA
27109392 ACTTAG-GCTACATAGTCAAACTCGC-C
1 ACTTAGTGC-ACATAGTCAAA-TCGCAC
* * * * *
27109418 ACTAAGTTCCGCATGGTCAATTCGCAC
1 ACTTAG-TGCACATAGTCAAATCGCAC
* * **
27109445 ACTTAAGTGCATCACATTCATTTCGCAC
1 ACTT-AGTGCA-CATAGTCAAATCGCAC
27109473 ACTTAGTGCACATAGTCAAATCGCAC
1 ACTTAGTGCACATAGTCAAATCGCAC
27109499 ACTTAGTGC
1 ACTTAGTGC
27109508 TGTACAATTT
Statistics
Matches: 69, Mismatches: 16, Indels: 10
0.73 0.17 0.11
Matches are distributed among these distances:
26 30 0.43
27 20 0.29
28 19 0.28
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (26 bp):
ACTTAGTGCACATAGTCAAATCGCAC
Found at i:27111543 original size:12 final size:12
Alignment explanation
Indices: 27111528--27111564 Score: 58
Period size: 11 Copynumber: 3.1 Consensus size: 12
27111518 AAAAAAGATC
27111528 AAAAAAATTCGAA
1 AAAAAAATTCG-A
27111541 AAAAAAATT-GA
1 AAAAAAATTCGA
27111552 AAAAAAATTCGA
1 AAAAAAATTCGA
27111564 A
1 A
27111565 GTATTAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 10 0.43
12 4 0.17
13 9 0.39
ACGTcount: A:0.70, C:0.05, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAAAAATTCGA
Found at i:27111546 original size:24 final size:23
Alignment explanation
Indices: 27111514--27111564 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 23
27111504 ACATTGTATT
27111514 GAAAAAAAAA-GATCAAAAAAATTC
1 GAAAAAAAAATGA--AAAAAAATTC
27111538 GAAAAAAAAATTGAAAAAAAATTC
1 GAAAAAAAAA-TGAAAAAAAATTC
27111562 GAA
1 GAA
27111565 GTATTAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 23 0.92
26 2 0.08
ACGTcount: A:0.71, C:0.06, G:0.10, T:0.14
Consensus pattern (23 bp):
GAAAAAAAAATGAAAAAAAATTC
Found at i:27116081 original size:13 final size:13
Alignment explanation
Indices: 27116065--27116103 Score: 62
Period size: 12 Copynumber: 3.0 Consensus size: 13
27116055 AAAAAAAATC
27116065 AAAAAAATTCGAAA
1 AAAAAAATTCG-AA
27116079 AAAAAAATT-GAA
1 AAAAAAATTCGAA
27116091 AAAAAAATTCGAA
1 AAAAAAATTCGAA
27116104 GTATTAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 11 0.46
13 4 0.17
14 9 0.38
ACGTcount: A:0.72, C:0.05, G:0.08, T:0.15
Consensus pattern (13 bp):
AAAAAAATTCGAA
Found at i:27116099 original size:12 final size:12
Alignment explanation
Indices: 27116049--27116099 Score: 54
Period size: 12 Copynumber: 4.3 Consensus size: 12
27116039 AGCATATTGT
27116049 AATTGAAAAAAA
1 AATTGAAAAAAA
*
27116061 AA-T--CAAAAA
1 AATTGAAAAAAA
27116070 AATTCGAAAAAAAA
1 AATT-G-AAAAAAA
27116084 AATTGAAAAAAA
1 AATTGAAAAAAA
27116096 AATT
1 AATT
27116100 CGAAGTATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
9 7 0.22
10 1 0.03
11 1 0.03
12 13 0.41
13 1 0.03
14 9 0.28
ACGTcount: A:0.73, C:0.04, G:0.06, T:0.18
Consensus pattern (12 bp):
AATTGAAAAAAA
Found at i:27121236 original size:11 final size:11
Alignment explanation
Indices: 27121221--27121260 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
27121211 GTTTTCTCCT
27121221 TATTTTGCTAC
1 TATTTTGCTAC
* *
27121232 AATTTTACTAC
1 TATTTTGCTAC
*
27121243 TATGTTGCTAC
1 TATTTTGCTAC
27121254 TATTTTG
1 TATTTTG
27121261 TTGTTATTGT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.23, C:0.15, G:0.10, T:0.53
Consensus pattern (11 bp):
TATTTTGCTAC
Found at i:27121331 original size:30 final size:30
Alignment explanation
Indices: 27121297--27121361 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
27121287 ACTTATTTTA
*
27121297 TTGTTAATTTTGTTATTATTTTAAAGGTAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
*
27121327 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
27121357 TTGTT
1 TTGTT
27121362 CGTTAAATTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.23, C:0.02, G:0.15, T:0.60
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGCAT
Found at i:27122900 original size:616 final size:608
Alignment explanation
Indices: 27121667--27123246 Score: 2257
Period size: 616 Copynumber: 2.6 Consensus size: 608
27121657 ATTGATATGT
* *
27121667 AAGTGAAAA-AAACATAGTAGTTGTCGGCC-TCAACATTGTTCATT-CTAGGATGGTTAAGATTG
1 AAGTGAAAACAACCATAGTATTTGTC-GCCTTCAACATTGTT-ATTACTAGGATGGTTAAGATTG
* * * ** *
27121729 TACATAAACAAGAAAAAAAAAACCTACTGCA-TCGCAGTTGCACTGAAATAACCAATGAAAAATT
64 TACATAAACAA-AAAGAAAAAACCTAGTGCATTAG-AGAGGCACTGAAATAAGCAATGAAAAATT
* * *
27121793 TCCGCAATTTTTAGGTTCTTATTCATTTATAGATAAACGAATGAGGTGACTAAAATGATAATTAT
127 TCCCCAATTTTTAGGTTCTTATTCATTTATAGATAAAAGAATGAAGTGACTAAAATGATAATTAT
* * *
27121858 TTAGTTGTATGTATAATAATGACATGGAAATTACATCACTAAGTGGAAAATCAAAATTTACAACA
192 TTAGTTGTATGTATAATAATGACATGGAAATTACATTACTAGGTGGAAAGTCAAAATTTACAACA
* *
27121923 AATTCCAAGTGGGTTTTCCGTTACCCATTTCAACGGGAGTGACCAAAGTGAACAA-ACTGTAACA
257 AATTCCAAGTGGGTTTT-CGTTACCCATTTCAACAGGAGTGACCAAAATGAA-AATACTGTAACA
* *
27121987 TCGTTGTCTATTTTACAACTTTTTTTCTAGATATCTAAAAT----G------AAGTT-GACCAAC
320 TCGATGCCTATTTTACAACTTTTTTTCTAGATATCTAAAATGAAAGTTTTAAAAGTTGGACCAAC
27122041 TATGTAGTTTACCCTTATTTATTTTCTAATTAAATTAAACTAATTTTGAAGAAAATCAAATAGTT
385 TATGTAGTTTACCCTTATTTATTTTCTAATTAAATTAAACTAATTTTGAAGAAAATCAAATAGTT
*
27122106 AAAGAGTTTTCAAAACACATTTGAATGAGTTTGTAGGGTAGCCAAAGGATTACCAATATAATTAT
450 AAAGAGTTTTCAAAACACATTTGAATGAGTTTGTAGGGTAGCCAAAGGAATACCAATATAATTAT
* *
27122171 AATGACATATGTGCATTTTTTACTAAAATCTGGCTTTCATTTATGTGATCAAGAGCAACAAAACA
515 AATGACATATGTACATTTTTGACTAAAATCTGGCTTTCATTTATGTGATCAAGAGCAACAAAACA
27122236 GAATTTAAAGTAAAACTAAAAGCAAATAA
580 GAATTTAAAGTAAAACTAAAAGCAAATAA
* *
27122265 AAGTGAAAACAACCATAGTATTTGTTGCCTTCAACATTGTTTTTACTAGGATGGTTAAGATTGTA
1 AAGTGAAAACAACCATAGTATTTGTCGCCTTCAACATTGTTATTACTAGGATGGTTAAGATTGTA
* * * *
27122330 CATAAACAAAAAGAAAAAACCTAGTACATTAGAGAGGGACTGAAATAAGCAATGATAAATTCCCC
66 CATAAACAAAAAGAAAAAACCTAGTGCATTAGAGAGGCACTGAAATAAGCAATGAAAAATTTCCC
*
27122395 CAATTTTGAGGTTCTTATTCATTTATAGATAAAAGAATGAAGTGACTAAAATGATAATTATTTAG
131 CAATTTTTAGGTTCTTATTCATTTATAGATAAAAGAATGAAGTGACTAAAATGATAATTATTTAG
* * *
27122460 TTGTATGTATAATAATGACGTAGAAATTACATTACTAGGTAGAAAGTCAAAATTTACAACAAATT
196 TTGTATGTATAATAATGACATGGAAATTACATTACTAGGTGGAAAGTCAAAATTTACAACAAATT
* *
27122525 CCAAGTGGGTTTTCAGTTACCCATTTCAACAGGAGTGACCAAAATGAAAATATTGTAACACCGAT
261 CCAAGTGGGTTTTC-GTTACCCATTTCAACAGGAGTGACCAAAATGAAAATACTGTAACATCGAT
*
27122590 GCCTATTTTACAACTTTTTTCTTTTAGATATCTAAAATGAAAGTTTATAAAAGTTGGGTAACCAA
325 GCCTATTTTACAAC-TTTTT-TTCTAGATATCTAAAATGAAAGTTT-TAAAAGTT-GG--ACCAA
* * *
27122655 TTGTGTAGTTTACCCTTATTTCTTTTCTAATTAAAATTAAACTAATTTTGAAGAAAATCAAATAG
384 CTATGTAGTTTACCCTTATTTATTTTCTAATT-AAATTAAACTAATTTTGAAGAAAATCAAATAG
* *
27122720 TTTAAGAGTTTTCAAAACACATTTGAATGATTTTGTAGGGTAGCCAAAGGAATACCAATATAATT
448 TTAAAGAGTTTTCAAAACACATTTGAATGAGTTTGTAGGGTAGCCAAAGGAATACCAATATAATT
* *
27122785 ATAATGACATATGTACATTTTTGACTAAAATTTGGCTTTCATTTATGTGATCATGAGCAACAAAA
513 ATAATGACATATGTACATTTTTGACTAAAATCTGGCTTTCATTTATGTGATCAAGAGCAACAAAA
* *
27122850 TAGAATTTAAAGTAAAACTAAAAGCGAATAA
578 CAGAATTTAAAGTAAAACTAAAAGCAAATAA
* * * * **
27122881 AAGTGAAAACAACCATAGTATTTGTCGTCTTTAATATTGTTCA-TACTAGGATAGTTAAGATTAA
1 AAGTGAAAACAACCATAGTATTTGTCGCCTTCAACATTGTT-ATTACTAGGATGGTTAAGATTGT
* * * *
27122945 ACAAAAACAAGAAGAAAAAA-CTAGTGCATTAGAGAGGCACTAAAATAAGCAATAAAAAATTTCC
65 ACATAAACAAAAAGAAAAAACCTAGTGCATTAGAGAGGCACTGAAATAAGCAATGAAAAATTTCC
* *
27123009 CCAATTTTTAGGTTCTTATTCATTTATAGATAAAATAATGAAGTGACT--AAT-ATGA-TA---A
130 CCAATTTTTAGGTTCTTATTCATTTATAGATAAAAGAATGAAGTGACTAAAATGATAATTATTTA
27123067 ----TATGTATAATAATGACATGGAAATTACATTACTAGGTGGAAAGTCAAAATTTACAACAAAT
195 GTTGTATGTATAATAATGACATGGAAATTACATTACTAGGTGGAAAGTCAAAATTTACAACAAAT
* * *
27123128 TCCAAGTGGTTTTTCGTTACCCACTTCAACAGGAGTGACCAAAATGAAAGTACTGTAACATCGAT
260 TCCAAGTGGGTTTTCGTTACCCATTTCAACAGGAGTGACCAAAATGAAAATACTGTAACATCGAT
* *
27123193 GCCTATTTTACCAA-TTTTTTTCTAGATAACTAAAATGAAAATTTGTAAAAGTTG
325 GCCTATTTTA-CAACTTTTTTTCTAGATATCTAAAATGAAAGTTT-TAAAAGTTG
27123247 AGTGTAACAC
Statistics
Matches: 882, Mismatches: 74, Indels: 50
0.88 0.07 0.05
Matches are distributed among these distances:
597 3 0.00
598 245 0.28
599 60 0.07
600 17 0.02
601 30 0.03
602 5 0.01
603 56 0.06
604 76 0.09
608 1 0.00
611 7 0.01
612 3 0.00
613 4 0.00
615 118 0.13
616 257 0.29
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (608 bp):
AAGTGAAAACAACCATAGTATTTGTCGCCTTCAACATTGTTATTACTAGGATGGTTAAGATTGTA
CATAAACAAAAAGAAAAAACCTAGTGCATTAGAGAGGCACTGAAATAAGCAATGAAAAATTTCCC
CAATTTTTAGGTTCTTATTCATTTATAGATAAAAGAATGAAGTGACTAAAATGATAATTATTTAG
TTGTATGTATAATAATGACATGGAAATTACATTACTAGGTGGAAAGTCAAAATTTACAACAAATT
CCAAGTGGGTTTTCGTTACCCATTTCAACAGGAGTGACCAAAATGAAAATACTGTAACATCGATG
CCTATTTTACAACTTTTTTTCTAGATATCTAAAATGAAAGTTTTAAAAGTTGGACCAACTATGTA
GTTTACCCTTATTTATTTTCTAATTAAATTAAACTAATTTTGAAGAAAATCAAATAGTTAAAGAG
TTTTCAAAACACATTTGAATGAGTTTGTAGGGTAGCCAAAGGAATACCAATATAATTATAATGAC
ATATGTACATTTTTGACTAAAATCTGGCTTTCATTTATGTGATCAAGAGCAACAAAACAGAATTT
AAAGTAAAACTAAAAGCAAATAA
Found at i:27123663 original size:13 final size:13
Alignment explanation
Indices: 27123641--27123673 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
27123631 CTGACTTGTA
27123641 CCACACGGCCAAG
1 CCACACGGCCAAG
*
27123654 CCACATGGCCAAG
1 CCACACGGCCAAG
27123667 CCACACG
1 CCACACG
27123674 CCCATGTGCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.30, C:0.45, G:0.21, T:0.03
Consensus pattern (13 bp):
CCACACGGCCAAG
Found at i:27125027 original size:25 final size:25
Alignment explanation
Indices: 27124992--27125053 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
27124982 ACGAGTTGTA
*
27124992 AACGGTAAGCTCCTCCGAGCTGAAT
1 AACGGTAAGCTCCTCCGAACTGAAT
* *
27125017 AATGGTAAGCTCCTCTGAACTGAAT
1 AACGGTAAGCTCCTCCGAACTGAAT
*
27125042 ACCGGTAAGCTC
1 AACGGTAAGCTC
27125054 ATACGAGTTG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.23
Consensus pattern (25 bp):
AACGGTAAGCTCCTCCGAACTGAAT
Found at i:27127860 original size:612 final size:611
Alignment explanation
Indices: 27126295--27128990 Score: 3548
Period size: 612 Copynumber: 4.4 Consensus size: 611
27126285 GTTACATTGA
* **
27126295 GTGACCAACTGTGTAGTTTACCCTTATTT-TTTTCTAATTAAATTAAACTAAGTTTT-AAGAAAA
1 GTGACCAACTATGTAGTTTACTTTTATTTCTTTTCTAATTAAATTAAACTAA-TTTTGAAGAAAA
* * *
27126358 TCAAATAGTTAAAAAGTTT-TCAAAACACAATTGAACGAGTTTGTAGGGTAGTCGAAGGATTAAC
65 TCAAATAGTTAAAGAGTTTCT-AAAACACATTTGAACGAGTTTGTAGGGTAG-CCAAGGATTAAC
** * * *
27126422 AATATAATTATAATGAC--ATATATATTTTTGACTTTAATATGGTTTTTA-TTGATGTGGTTAGG
128 AATATAATTATAATGACATATATATATTTTTGACTAAAATATGGCTTTCAGTT-ATGTGATTAGG
* * * * *
27126484 AGCTAGAAAACAAAATTTAAAGTAAAACCAAAAGGAAATAAAAGTGAAAAAAACCATAGTATTTG
192 AGCAACAAAACAAAATTTAAAGTAAAACTAAAAGCAAATAAAAGTGAAAACAACCATAGTATTTG
** * * ** * * * *
27126549 TGGGCTTCAACATTGTTTGTACTAGGACGGATAAGATTGTAGATAAATAAGAA-AAGGAAAACTA
257 TCAGCTACAACATTGTTCGTACTAGGATAGCTAAGATTGTACAAAAACAAGAAGAA--AAAACTA
**** * *
27126613 GTGCATTTTCTAGGCACTCG-AATAAGCAGTGAAAAATTTCCCTC-ATTTTTAGGTTCTTATTCA
320 GTGCATTAGAGAGGCACT-GAAATAAGCAATGAAAAATCTCCC-CAATTTTTAGGTTCTTATTCA
* * * *
27126676 TTCATAGATAAAATAATGAAGTAACTAAAATGATAATATTTAGTTTTATGTATAATAATGACATG
383 TTTATAGATAAAAGAATGAAGTGACTAAAATGATAATATTTAGTTGTATGTATAATAATGACATG
* **
27126741 GAAATTACATTACTAGGTGGAAAATCAAAATTTACAACAAATTCCGAGTGGGTTTTCCGTTATTC
448 GAAATTACATTACTAGGTGGAAAATCAAAATTTACAACAAATTCCAAGTGGGTTTTCCGTTACCC
* *
27126806 ATTTCAATGGGAGTGGCCAAAATGAAAATACTATAACATCGATGTCTATTTTACAACTTTTTTCT
513 ATTTCAATGGGAGTGACCAAAATGAAAATACTGTAACATCGATGTCTATTTTACAACTTTTTT-T
27126871 TCTAGATATCTAAAATGAAAATTTGTAAAAGTTGG
577 TCTAGATATCTAAAATGAAAATTTGTAAAAGTTGG
* * * *
27126906 GTGACCAACTATGCAATTTACTTTTGTTTCTTTTCTAATTAAAATTAAACTAATTTTAAAGAAAA
1 GTGACCAACTATGTAGTTTACTTTTATTTCTTTTCTAATT-AAATTAAACTAATTTTGAAGAAAA
* * * * **
27126971 TCAAATAGTTAAAGAGTTTCCAGAACACATTTAAACGAGTTTGTAGGGTTGCCAAAGGATTATTA
65 TCAAATAGTTAAAGAGTTTCTAAAACACATTTGAACGAGTTTGTAGGGTAGCC-AAGGATTAACA
* * *
27127036 ATATAATTATAATGACATATATATATTTTTGACTAAAATCTGTCTTTCAGTTATGCGATTAGGAG
129 ATATAATTATAATGACATATATATATTTTTGACTAAAATATGGCTTTCAGTTATGTGATTAGGAG
* * * *
27127101 CAACAAAACAAAATGTAAAGGAAAACTAAAAGCAAATAAAAGTGTAAACAACCATAGTATTTGCC
194 CAACAAAACAAAATTTAAAGTAAAACTAAAAGCAAATAAAAGTGAAAACAACCATAGTATTTGTC
*
27127166 AGCTACAACATTGTTCGTACTAGGATAACTAAGATTGTACAAAAACAAGAAGAAAAAACTAGTGC
259 AGCTACAACATTGTTCGTACTAGGATAGCTAAGATTGTACAAAAACAAGAAGAAAAAACTAGTGC
27127231 -TTCAGAGAGGCACTGAAATAAGCAATGAAAAATCTCCCCAATTTTTAGGTTCTTATTCATTTAT
324 ATT-AGAGAGGCACTGAAATAAGCAATGAAAAATCTCCCCAATTTTTAGGTTCTTATTCATTTAT
*
27127295 AGATACAAGAATGAAGTGACTAAAATGATAATATTTAGTTGTATGTATAATAATGACATGGAAAT
388 AGATAAAAGAATGAAGTGACTAAAATGATAATATTTAGTTGTATGTATAATAATGACATGGAAAT
* *
27127360 TACATTACTAGGTGGAAAATCAAAATTTACAACAAATTCCAAGT-TGTTTTCCGTTGCCCATTTC
453 TACATTACTAGGTGGAAAATCAAAATTTACAACAAATTCCAAGTGGGTTTTCCGTTACCCATTTC
* * * *
27127424 AATGGGAGTGACCAAAATGAAAATATTGTAACATTGATGTTTATTTTACAATTTTTTTCTTCTAG
518 AATGGGAGTGACCAAAATGAAAATACTGTAACATCGATGTCTATTTTACAACTTTTTT-TTCTAG
*
27127489 ATATCTACAATGAAAATTTGTAAAAGTTGG
582 ATATCTAAAATGAAAATTTGTAAAAGTTGG
* *
27127519 GTGACCAACTATGCAGTTTACTTTTGTTTCTTTTCTAATTAAAATTAAACTAATTTTGAAGAAAA
1 GTGACCAACTATGTAGTTTACTTTTATTTCTTTTCTAATT-AAATTAAACTAATTTTGAAGAAAA
* * * * **
27127584 TCAAATAGTTAAAGAGTTTCTAGAACACATTTAAACGAGTTTGTAGGGTTGCCAAAGATTATTAA
65 TCAAATAGTTAAAGAGTTTCTAAAACACATTTGAACGAGTTTGTAGGGTAGCCAAGGATTAACAA
* *
27127649 TATAATTATAATGACATATATATATTTTTGACTAAAATATGGCTTCCAGTTATGCGATTAGGAGC
130 TATAATTATAATGACATATATATATTTTTGACTAAAATATGGCTTTCAGTTATGTGATTAGGAGC
* * *
27127714 AACAAAACAAAATGTAAAGGAAAACTAAAAGCAAATAAAAGTGTAAACAACCATAGTATTTGTCA
195 AACAAAACAAAATTTAAAGTAAAACTAAAAGCAAATAAAAGTGAAAACAACCATAGTATTTGTCA
27127779 GCTACAACATTGTTCGTACTAGGATAGCTAAGATTGTACAAAAACAAGAAGAAAAAACTAGTGC-
260 GCTACAACATTGTTCGTACTAGGATAGCTAAGATTGTACAAAAACAAGAAGAAAAAACTAGTGCA
27127843 TTCAGAGAGGCACTGAAATAAGCAATGAAAAATCTCCCCAATTTTTAGGTTCTTATTCATTTATA
325 TT-AGAGAGGCACTGAAATAAGCAATGAAAAATCTCCCCAATTTTTAGGTTCTTATTCATTTATA
* *
27127908 GATAAAAGAACGAAGTGACTAAAATGATAATATTTAGTTGTATGTATAATAATGACATGAAAATT
389 GATAAAAGAATGAAGTGACTAAAATGATAATATTTAGTTGTATGTATAATAATGACATGGAAATT
** * * * *
27127973 ACATTACTAGGTGGAATGTCAAATTTTACAAAAAATTCCAAGTGGGTTTT-TGTTACCCATTTAA
454 ACATTACTAGGTGGAAAATCAAAATTTACAACAAATTCCAAGTGGGTTTTCCGTTACCCATTTCA
* * *
27128037 ATGGGAGTGAACAAAATGATAATACTGTAACATCGATGCCTATTTTACAACTTCTTCTTTTTGCT
519 ATGGGAGTGACCAAAATGAAAATACTGTAACATCGATGTCTATTTTACAAC-T-TT-TTTTT-CT
27128102 AGATATCTAAAATGAAAATTTGTAAAAGTTGG
580 AGATATCTAAAATGAAAATTTGTAAAAGTTGG
** *
27128134 GTGACCAACTATGTAGTTTACCCTTATTTCTTTTCTAATTAAATTAAACTAATTTTGAAGAAAAC
1 GTGACCAACTATGTAGTTTACTTTTATTTCTTTTCTAATTAAATTAAACTAATTTTGAAGAAAAT
* * *
27128199 CAAATAGTTAAAGAGTTTTCT-AAACACATATGAATGAGTTTGTAGGGTAGCCGGAGGATTAACA
66 CAAATAGTTAAAGAG-TTTCTAAAACACATTTGAACGAGTTTGTAGGGTAGCC-AAGGATTAACA
* * *
27128263 ATATAATTATAATGA-ATTATATATATTTTTGACTAAAATATGGCTTTCATTTATGTGATCACGA
129 ATATAATTATAATGACA-TATATATATTTTTGACTAAAATATGGCTTTCAGTTATGTGATTAGGA
** *
27128327 GCAACAAAACTGAATTTAAAGTAAAACTAAAAGCAAATAAACGTGAAAACAACCATAGTATTTGT
193 GCAACAAAACAAAATTTAAAGTAAAACTAAAAGCAAATAAAAGTGAAAACAACCATAGTATTTGT
** * * * * * * * * *
27128392 GGGCTTCAACATTTTTCGTTCTAGGATGGTTAAGATTATACATAAACAATAAAACAAAAAAACTA
258 CAGCTACAACATTGTTCGTACTAGGATAGCTAAGATTGTACAAAAAC-A-AGAA-GAAAAAACTA
* * * *
27128457 GTGCATTAGAGCGGCATTGAAATAAGCAATGAAAAATTTCCTCAATTTTTAGGTTCTTATTCATT
320 GTGCATTAGAGAGGCACTGAAATAAGCAATGAAAAATCTCCCCAATTTTTAGGTTCTTATTCATT
* * * * * * *
27128522 TATAGGTAAAAGAATGAAATGCCTAAAATGATAGTTATTTAGTTTTATGTCTAATAAAGACATGG
385 TATAGATAAAAGAATGAAGTGACTAAAATGATA-ATATTTAGTTGTATGTATAATAATGACATGG
* *** *
27128587 AAATTACATTACTAGGTGGAAAATCAAAATTTACAACAAATTCCAAGTGTGTTTTCAAATACCTA
449 AAATTACATTACTAGGTGGAAAATCAAAATTTACAACAAATTCCAAGTGGGTTTTCCGTTACCCA
* * * * * *
27128652 TTTCAACGGGAGTGACCAAAATTAACATACTCTAACATTGATGACTATTTTACAACTTTTTTTTC
514 TTTCAATGGGAGTGACCAAAATGAAAATACTGTAACATCGATGTCTATTTTACAACTTTTTTTTC
27128717 TAGATATCTAAAATGAAAATTTGTAAAAGTTGG
579 TAGATATCTAAAATGAAAATTTGTAAAAGTTGG
* * *
27128750 GTGACCAACTGTTTAGTTTACTCTTT-TTTCTTTTCTAATTAAATTAAACTATTTTTTGAAGAAA
1 GTGACCAACTATGTAGTTTACT-TTTATTTCTTTTCTAATTAAATTAAACTA-ATTTTGAAGAAA
* * * * * *
27128814 ACCAAACCA-TT-ATG-TTTTC-AAAACACATTTGAACGAGTTTGTTGGGTAGCCGATGGATTAA
64 ATCAAA-TAGTTAAAGAGTTTCTAAAACACATTTGAACGAGTTTGTAGGGTAGCC-AAGGATTAA
* * * * * *
27128875 AAATATAATTATAATGAGATAT-T-T-TTTTTTACTAAAAGATGGCTTGCATTTATGTGATTAGG
127 CAATATAATTATAATGACATATATATATTTTTGACTAAAATATGGCTTTCAGTTATGTGATTAGG
* * * * * *
27128937 GGCAACAAAACAAAATTTAAAGTAAAAGTGAAAGGAAATAAAAGTCACAACAAC
192 AGCAACAAAACAAAATTTAAAGTAAAACTAAAAGCAAATAAAAGTGAAAACAAC
27128991 GACACATTGA
Statistics
Matches: 1865, Mismatches: 189, Indels: 62
0.88 0.09 0.03
Matches are distributed among these distances:
611 101 0.05
612 437 0.23
613 318 0.17
614 294 0.16
615 371 0.20
616 85 0.05
617 29 0.02
618 99 0.05
619 79 0.04
620 52 0.03
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (611 bp):
GTGACCAACTATGTAGTTTACTTTTATTTCTTTTCTAATTAAATTAAACTAATTTTGAAGAAAAT
CAAATAGTTAAAGAGTTTCTAAAACACATTTGAACGAGTTTGTAGGGTAGCCAAGGATTAACAAT
ATAATTATAATGACATATATATATTTTTGACTAAAATATGGCTTTCAGTTATGTGATTAGGAGCA
ACAAAACAAAATTTAAAGTAAAACTAAAAGCAAATAAAAGTGAAAACAACCATAGTATTTGTCAG
CTACAACATTGTTCGTACTAGGATAGCTAAGATTGTACAAAAACAAGAAGAAAAAACTAGTGCAT
TAGAGAGGCACTGAAATAAGCAATGAAAAATCTCCCCAATTTTTAGGTTCTTATTCATTTATAGA
TAAAAGAATGAAGTGACTAAAATGATAATATTTAGTTGTATGTATAATAATGACATGGAAATTAC
ATTACTAGGTGGAAAATCAAAATTTACAACAAATTCCAAGTGGGTTTTCCGTTACCCATTTCAAT
GGGAGTGACCAAAATGAAAATACTGTAACATCGATGTCTATTTTACAACTTTTTTTTCTAGATAT
CTAAAATGAAAATTTGTAAAAGTTGG
Found at i:27130430 original size:29 final size:29
Alignment explanation
Indices: 27130396--27130454 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
27130386 CCCACCTTGG
* * *
27130396 CACGAATTCTCAATGAACAAGTTCTTCAC
1 CACGAACTCTCAACGAACAAGTTCTCCAC
*
27130425 CACGAACTCTTAACGAACAAGTTCTCCAC
1 CACGAACTCTCAACGAACAAGTTCTCCAC
27130454 C
1 C
27130455 TCTTCCATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.34, C:0.32, G:0.10, T:0.24
Consensus pattern (29 bp):
CACGAACTCTCAACGAACAAGTTCTCCAC
Found at i:27147723 original size:12 final size:12
Alignment explanation
Indices: 27147706--27147735 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
27147696 CCTCACACGC
*
27147706 CCGTGTGCTGGG
1 CCGTGTGCTAGG
27147718 CCGTGTGCTAGG
1 CCGTGTGCTAGG
27147730 CCGTGT
1 CCGTGT
27147736 AACACCATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.03, C:0.27, G:0.43, T:0.27
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:27150040 original size:23 final size:24
Alignment explanation
Indices: 27149992--27150040 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
27149982 AATTAATTTA
*
27149992 ATTACAATTTAATCACATATTAAC
1 ATTACAATTTAATCACAAATTAAC
27150016 ATTA-AATTTAATCA-AAATTACAC
1 ATTACAATTTAATCACAAATTA-AC
27150039 AT
1 AT
27150041 AATACAGTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 5 0.22
23 14 0.61
24 4 0.17
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (24 bp):
ATTACAATTTAATCACAAATTAAC
Found at i:27151840 original size:14 final size:14
Alignment explanation
Indices: 27151821--27151849 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
27151811 TTTCATGCTT
27151821 ACATGTCTTAGTTC
1 ACATGTCTTAGTTC
27151835 ACATGTCTTAGTTC
1 ACATGTCTTAGTTC
27151849 A
1 A
27151850 TATTGAACAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.24, C:0.21, G:0.14, T:0.41
Consensus pattern (14 bp):
ACATGTCTTAGTTC
Found at i:27158348 original size:23 final size:23
Alignment explanation
Indices: 27158304--27158348 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
27158294 GATTTAATTA
*
27158304 CAATATAATCACATATTAACATT
1 CAATATAATCACAAATTAACATT
*
27158327 CAATTTAATCA-AAATTATACAT
1 CAATATAATCACAAATTA-ACAT
27158349 AATACAGTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.36
Consensus pattern (23 bp):
CAATATAATCACAAATTAACATT
Found at i:27161816 original size:10 final size:10
Alignment explanation
Indices: 27161801--27161862 Score: 52
Period size: 10 Copynumber: 5.9 Consensus size: 10
27161791 TTTGAACCAT
*
27161801 TACCAATTCG
1 TACCAATTCA
*
27161811 TACCAAATACCA
1 TACC-AAT-TCA
*
27161823 TACCATTTCA
1 TACCAATTCA
27161833 TACCAATTCCA
1 TACCAATT-CA
* *
27161844 TACCATTTCG
1 TACCAATTCA
27161854 TACCAATTC
1 TACCAATTC
27161863 CCAAATACCA
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
10 22 0.54
11 14 0.34
12 5 0.12
ACGTcount: A:0.34, C:0.32, G:0.03, T:0.31
Consensus pattern (10 bp):
TACCAATTCA
Found at i:27161846 original size:21 final size:21
Alignment explanation
Indices: 27161801--27161863 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
27161791 TTTGAACCAT
* *
27161801 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
*
27161823 TACCATTTCATACCAATTCCA
1 TACCATTTCGTACCAATTCCA
27161844 TACCATTTCGTACCAATTCC
1 TACCATTTCGTACCAATTCC
27161864 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 25 0.68
22 12 0.32
ACGTcount: A:0.33, C:0.33, G:0.03, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:27162195 original size:16 final size:17
Alignment explanation
Indices: 27162195--27162241 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
27162185 TTTGAAAAAA
*
27162195 AAAACAAAAAAAAATTGT
1 AAAA-AAAAAAAATTTGT
*
27162213 AAGAAAAAAAAATTTG-
1 AAAAAAAAAAAATTTGT
*
27162229 AAAGAAAAAAAAT
1 AAAAAAAAAAAAT
27162242 CGTATACGGT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
16 11 0.44
17 11 0.44
18 3 0.12
ACGTcount: A:0.74, C:0.02, G:0.09, T:0.15
Consensus pattern (17 bp):
AAAAAAAAAAAATTTGT
Found at i:27162202 original size:24 final size:26
Alignment explanation
Indices: 27162175--27162224 Score: 77
Period size: 24 Copynumber: 2.0 Consensus size: 26
27162165 AAAAAAAGTT
*
27162175 CAAAAAAAAATT-TGA-AAAAAAAAA
1 CAAAAAAAAATTGTAAGAAAAAAAAA
27162199 CAAAAAAAAATTGTAAGAAAAAAAAA
1 CAAAAAAAAATTGTAAGAAAAAAAAA
27162225 TTTGAAAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 12 0.52
25 2 0.09
26 9 0.39
ACGTcount: A:0.78, C:0.04, G:0.06, T:0.12
Consensus pattern (26 bp):
CAAAAAAAAATTGTAAGAAAAAAAAA
Found at i:27162231 original size:13 final size:13
Alignment explanation
Indices: 27162164--27162238 Score: 64
Period size: 13 Copynumber: 5.6 Consensus size: 13
27162154 AGGTACGTAC
* *
27162164 AAAAAAAAGTTCA
1 AAAAAAAATTTGA
27162177 AAAAAAAATTTGA
1 AAAAAAAATTTGA
**
27162190 AAAAAAAA--ACA
1 AAAAAAAATTTGA
27162201 AAAAAAAATTGTAAGA
1 AAAAAAAATT-T--GA
27162217 AAAAAAAATTTGA
1 AAAAAAAATTTGA
27162230 AAGAAAAAA
1 AA-AAAAAA
27162239 AATCGTATAC
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
11 9 0.18
13 23 0.46
14 6 0.12
15 1 0.02
16 11 0.22
ACGTcount: A:0.75, C:0.03, G:0.08, T:0.15
Consensus pattern (13 bp):
AAAAAAAATTTGA
Found at i:27166755 original size:10 final size:10
Alignment explanation
Indices: 27166740--27166801 Score: 52
Period size: 10 Copynumber: 5.9 Consensus size: 10
27166730 TTTGAACCAT
*
27166740 TACCAATTCG
1 TACCAATTCA
*
27166750 TACCAAATACCA
1 TACC-AAT-TCA
*
27166762 TACCATTTCA
1 TACCAATTCA
27166772 TACCAATTCCA
1 TACCAATT-CA
* *
27166783 TACCATTTCG
1 TACCAATTCA
27166793 TACCAATTC
1 TACCAATTC
27166802 CCAAATACCA
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
10 22 0.54
11 14 0.34
12 5 0.12
ACGTcount: A:0.34, C:0.32, G:0.03, T:0.31
Consensus pattern (10 bp):
TACCAATTCA
Found at i:27166785 original size:21 final size:21
Alignment explanation
Indices: 27166740--27166802 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
27166730 TTTGAACCAT
* *
27166740 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
*
27166762 TACCATTTCATACCAATTCCA
1 TACCATTTCGTACCAATTCCA
27166783 TACCATTTCGTACCAATTCC
1 TACCATTTCGTACCAATTCC
27166803 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 25 0.68
22 12 0.32
ACGTcount: A:0.33, C:0.33, G:0.03, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:27170781 original size:18 final size:18
Alignment explanation
Indices: 27170749--27170827 Score: 86
Period size: 18 Copynumber: 4.4 Consensus size: 18
27170739 ACTTGCCAGG
* *
27170749 CCGTGTGCCAATCTGTGC
1 CCGTGTCCCAGTCTGTGC
*
27170767 CTGTGTCCCAGTCTGTGC
1 CCGTGTCCCAGTCTGTGC
* * * *
27170785 CCGTTTTCCAATCTGTGG
1 CCGTGTCCCAGTCTGTGC
*
27170803 CCGTGTCCCAGTCCGTGC
1 CCGTGTCCCAGTCTGTGC
27170821 CCGTGTC
1 CCGTGTC
27170828 TTAGGCTGTG
Statistics
Matches: 48, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 48 1.00
ACGTcount: A:0.08, C:0.35, G:0.27, T:0.30
Consensus pattern (18 bp):
CCGTGTCCCAGTCTGTGC
Found at i:27170809 original size:36 final size:36
Alignment explanation
Indices: 27170756--27170824 Score: 113
Period size: 36 Copynumber: 1.9 Consensus size: 36
27170746 AGGCCGTGTG
*
27170756 CCAATCTGTGCCTGTGTCCCAGTCTGTGCCCGTTTT
1 CCAATCTGTGCCTGTGTCCCAGTCCGTGCCCGTTTT
27170792 CCAATCTGTGGCC-GTGTCCCAGTCCGTGCCCGT
1 CCAATCTGT-GCCTGTGTCCCAGTCCGTGCCCGT
27170825 GTCTTAGGCT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
36 28 0.90
37 3 0.10
ACGTcount: A:0.09, C:0.36, G:0.25, T:0.30
Consensus pattern (36 bp):
CCAATCTGTGCCTGTGTCCCAGTCCGTGCCCGTTTT
Found at i:27176946 original size:20 final size:20
Alignment explanation
Indices: 27176921--27176959 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
27176911 TGAGTTATTT
27176921 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
27176941 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
27176960 GAAGAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:27179534 original size:43 final size:41
Alignment explanation
Indices: 27179387--27179576 Score: 199
Period size: 41 Copynumber: 4.6 Consensus size: 41
27179377 TCTTTGAATG
* * * *
27179387 TAAGG-GGTTGCTAAGTGCAGATTCCCCGAATCATTGATCA
1 TAAGGTGGTTGCTAAGTGCTGATTCCTCGTATCATTGATTA
* *
27179427 AATAGG-GGTTGCTATGTGCTGATT-CTCTGTATCATTGATTA
1 TA-AGGTGGTTGCTAAGTGCTGATTCCTC-GTATCATTGATTA
* *
27179468 TAAGGTGGTTGCTAAGTGCTGATTCCATCGTATCCTTGATTG
1 TAAGGTGGTTGCTAAGTGCTGATTCC-TCGTATCATTGATTA
* * *
27179510 TGAAAGG-GGTTGCTATGTGTTGATTCCCCGTATCATTGATTA
1 T--AAGGTGGTTGCTAAGTGCTGATTCCTCGTATCATTGATTA
*
27179552 TAAGGTGGTTGCTAAGTGTTGATTC
1 TAAGGTGGTTGCTAAGTGCTGATTC
27179577 TACCGAGATC
Statistics
Matches: 126, Mismatches: 16, Indels: 15
0.80 0.10 0.10
Matches are distributed among these distances:
40 10 0.08
41 66 0.52
42 26 0.21
43 20 0.16
44 4 0.03
ACGTcount: A:0.22, C:0.15, G:0.26, T:0.37
Consensus pattern (41 bp):
TAAGGTGGTTGCTAAGTGCTGATTCCTCGTATCATTGATTA
Found at i:27180030 original size:21 final size:21
Alignment explanation
Indices: 27180006--27180045 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
27179996 TGACTTTGGA
27180006 AAATAATTAAAAATTGTAAAG
1 AAATAATTAAAAATTGTAAAG
* *
27180027 AAATAATTGAAAGTTGTAA
1 AAATAATTAAAAATTGTAA
27180046 TTTATATTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.12, T:0.30
Consensus pattern (21 bp):
AAATAATTAAAAATTGTAAAG
Found at i:27189845 original size:50 final size:47
Alignment explanation
Indices: 27189765--27189902 Score: 150
Period size: 50 Copynumber: 2.8 Consensus size: 47
27189755 TTATTGAGGT
** *
27189765 TATGAGAGGTCCCATGGAAGACCATGTCTGGGACATGGCATGGGCACCG
1 TATGAGAACTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA--G
* * * *
27189814 ATATGAGAACTCCCATGTAAGACCATATCTGGGATATGACATTGGCAG
1 -TATGAGAACTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCAG
* *
27189862 TACGGGAAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 TATGAG-AAC-TCCCATGTAAGACCATGTCTGGGACATGGC
27189903 TTTGGCATGT
Statistics
Matches: 74, Mismatches: 12, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
47 4 0.05
48 4 0.05
49 27 0.36
50 39 0.53
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.21
Consensus pattern (47 bp):
TATGAGAACTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCAG
Found at i:27189908 original size:49 final size:49
Alignment explanation
Indices: 27189774--27189909 Score: 159
Period size: 49 Copynumber: 2.8 Consensus size: 49
27189764 TTATGAGAGG
* * *
27189774 TCCCATGGAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CGATACGAGAAC
* * * *
27189824 TCCCATGTAAGACCATATCTGGGATATGACATTGGCA-G-TACGGGAAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACGATACGAG-AAC
*
27189872 ATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 -TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
27189910 TGTTATTATC
Statistics
Matches: 73, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
47 4 0.05
48 4 0.05
49 33 0.45
50 32 0.44
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (49 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACGATACGAGAAC
Found at i:27190137 original size:20 final size:20
Alignment explanation
Indices: 27190112--27190150 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
27190102 TGAGTTATTT
27190112 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
27190132 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
27190151 GAAGAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:27191695 original size:62 final size:59
Alignment explanation
Indices: 27191628--27191744 Score: 144
Period size: 62 Copynumber: 1.9 Consensus size: 59
27191618 AGTGATTATC
* * * * *
27191628 TTAATATTAAATTTATTGTAATATTTATCTTGTAGATAAATATTCTATTAATTAAATAAGAA
1 TTAATACTAAATTTAATCTAATAATTATC-T-T-GATAAATATTATATTAATTAAATAAGAA
* *
27191690 TTAATACTAAATTTAATCTAGTAATTATCTTGATAAATATTATATTAATTTAATA
1 TTAATACTAAATTTAATCTAATAATTATCTTGATAAATATTATATTAATTAAATA
27191745 TTAAATTGAT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
59 22 0.46
60 1 0.02
61 1 0.02
62 24 0.50
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (59 bp):
TTAATACTAAATTTAATCTAATAATTATCTTGATAAATATTATATTAATTAAATAAGAA
Found at i:27200802 original size:31 final size:31
Alignment explanation
Indices: 27200767--27200850 Score: 98
Period size: 31 Copynumber: 2.7 Consensus size: 31
27200757 GTATATGTTT
27200767 TATACATTGCCGAATTTGATTTGTATATAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
** * * *
27200798 TATACATCACCGAATTTGAATTGTTTATGGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* *
27200829 TATACATTGTC-AAATTGATTTG
1 TATACATTGCCGAATTTGATTTG
27200851 AGCATTGGAT
Statistics
Matches: 43, Mismatches: 10, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
30 9 0.21
31 34 0.79
ACGTcount: A:0.32, C:0.11, G:0.15, T:0.42
Consensus pattern (31 bp):
TATACATTGCCGAATTTGATTTGTATATAGA
Found at i:27201288 original size:38 final size:38
Alignment explanation
Indices: 27201246--27201320 Score: 150
Period size: 38 Copynumber: 2.0 Consensus size: 38
27201236 AACTAGATGT
27201246 ATATTTGACATTTTGGCAAGAATGTAAATGAGTAAGTC
1 ATATTTGACATTTTGGCAAGAATGTAAATGAGTAAGTC
27201284 ATATTTGACATTTTGGCAAGAATGTAAATGAGTAAGT
1 ATATTTGACATTTTGGCAAGAATGTAAATGAGTAAGT
27201321 AATACTTATG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.37, C:0.07, G:0.21, T:0.35
Consensus pattern (38 bp):
ATATTTGACATTTTGGCAAGAATGTAAATGAGTAAGTC
Found at i:27204304 original size:145 final size:145
Alignment explanation
Indices: 27204041--27204334 Score: 570
Period size: 145 Copynumber: 2.0 Consensus size: 145
27204031 TATGTGGTGA
*
27204041 AATTGTGAAATAAATGAAATATAGGGCTTTCTAAGGATTTAGTTGATATTCGGCCATAGTGGATT
1 AATTGTGAAATAAATGAAATATAGGGCTTTCTAAGGACTTAGTTGATATTCGGCCATAGTGGATT
27204106 GTGGTGAAATTGCATAAATTTCCATTTTTATGTGCTAGGGACTAAATTGTAAAGAATTAAAAGTA
66 GTGGTGAAATTGCATAAATTTCCATTTTTATGTGCTAGGGACTAAATTGTAAAGAATTAAAAGTA
27204171 TAAAGGTAAAATGGT
131 TAAAGGTAAAATGGT
*
27204186 AATTGTGAAATAAATGAAATATAGGGCTTTCTAAGGACTTAGTTGATATTTGGCCATAGTGGATT
1 AATTGTGAAATAAATGAAATATAGGGCTTTCTAAGGACTTAGTTGATATTCGGCCATAGTGGATT
27204251 GTGGTGAAATTGCATAAATTTCCATTTTTATGTGCTAGGGACTAAATTGTAAAGAATTAAAAGTA
66 GTGGTGAAATTGCATAAATTTCCATTTTTATGTGCTAGGGACTAAATTGTAAAGAATTAAAAGTA
27204316 TAAAGGTAAAATGGT
131 TAAAGGTAAAATGGT
27204331 AATT
1 AATT
27204335 TTGCAAAAAT
Statistics
Matches: 147, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
145 147 1.00
ACGTcount: A:0.37, C:0.07, G:0.22, T:0.35
Consensus pattern (145 bp):
AATTGTGAAATAAATGAAATATAGGGCTTTCTAAGGACTTAGTTGATATTCGGCCATAGTGGATT
GTGGTGAAATTGCATAAATTTCCATTTTTATGTGCTAGGGACTAAATTGTAAAGAATTAAAAGTA
TAAAGGTAAAATGGT
Found at i:27211385 original size:16 final size:17
Alignment explanation
Indices: 27211364--27211395 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
27211354 CACCTTTGAG
27211364 AAATTCTT-TCAGAATA
1 AAATTCTTCTCAGAATA
27211380 AAATTCTTCTCAGAAT
1 AAATTCTTCTCAGAAT
27211396 TATGAATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.41, C:0.16, G:0.06, T:0.38
Consensus pattern (17 bp):
AAATTCTTCTCAGAATA
Found at i:27214717 original size:30 final size:30
Alignment explanation
Indices: 27214660--27214721 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
27214650 GCTTTTTGAA
* * *
27214660 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGGAACCAAATTTTT
*
27214690 AATATTTACAAAAAGAGTAACCAAATTTTT
1 AATATTTACAAAAAGAGGAACCAAATTTTT
27214720 AA
1 AA
27214722 AAATAATTCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.48, C:0.10, G:0.08, T:0.34
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGAACCAAATTTTT
Found at i:27223698 original size:13 final size:13
Alignment explanation
Indices: 27223680--27223705 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
27223670 ACCTGAAAGC
27223680 AATTTAATTCATA
1 AATTTAATTCATA
27223693 AATTTAATTCATA
1 AATTTAATTCATA
27223706 TTAGGACACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
AATTTAATTCATA
Found at i:27224120 original size:20 final size:21
Alignment explanation
Indices: 27224095--27224133 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
27224085 TCAAACAAAC
27224095 AAATGAGCTCAA-TGAGCTGG
1 AAATGAGCTCAATTGAGCTGG
*
27224115 AAATGAGCTGAATTGAGCT
1 AAATGAGCTCAATTGAGCT
27224134 CAACGAGCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.23
Consensus pattern (21 bp):
AAATGAGCTCAATTGAGCTGG
Found at i:27225431 original size:18 final size:18
Alignment explanation
Indices: 27225410--27225461 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
27225400 CTCTCTTTCT
27225410 TTTTCAATCTCATTTTGC
1 TTTTCAATCTCATTTTGC
* *
27225428 TTTTCACTCT-ATTTTGT
1 TTTTCAATCTCATTTTGC
*
27225445 TTTTGAAATCTCATTTT
1 TTTT-CAATCTCATTTT
27225462 CATATTTTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
17 10 0.36
18 13 0.46
19 5 0.18
ACGTcount: A:0.17, C:0.17, G:0.06, T:0.60
Consensus pattern (18 bp):
TTTTCAATCTCATTTTGC
Found at i:27225475 original size:6 final size:6
Alignment explanation
Indices: 27225466--27225564 Score: 74
Period size: 6 Copynumber: 16.0 Consensus size: 6
27225456 CATTTTCATA
* * * **
27225466 TTTTTC TTTTTC AATTTTC TTTTCTTC ATTTTC TTTTTC TCTCAC TTTTTC
1 TTTTTC TTTTTC -TTTTTC -TTT-TTC TTTTTC TTTTTC TTTTTC TTTTTC
* * **
27225517 GTTTTC TTTTTC TTTTT- TGTTTTC TTTTTC TTCTTC ACTTTC TTTTTC
1 TTTTTC TTTTTC TTTTTC T-TTTTC TTTTTC TTTTTC TTTTTC TTTTTC
27225565 GAATTCATTA
Statistics
Matches: 70, Mismatches: 19, Indels: 8
0.72 0.20 0.08
Matches are distributed among these distances:
5 1 0.01
6 56 0.80
7 10 0.14
8 3 0.04
ACGTcount: A:0.05, C:0.20, G:0.02, T:0.73
Consensus pattern (6 bp):
TTTTTC
Found at i:27226529 original size:10 final size:10
Alignment explanation
Indices: 27226512--27226566 Score: 65
Period size: 10 Copynumber: 5.3 Consensus size: 10
27226502 TCAATCCACG
27226512 AATTTTTTTT
1 AATTTTTTTT
*
27226522 ACTTTTTTTTTT
1 A--ATTTTTTTT
* *
27226534 TATTTTTTTC
1 AATTTTTTTT
27226544 AATTTTTTTT
1 AATTTTTTTT
27226554 AATTTTTTTT
1 AATTTTTTTT
27226564 AAT
1 AAT
27226567 CACTTACTCC
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
10 29 0.78
12 8 0.22
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78
Consensus pattern (10 bp):
AATTTTTTTT
Found at i:27227686 original size:13 final size:13
Alignment explanation
Indices: 27227668--27227693 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
27227658 ACCTGAAAGC
27227668 AATTTAATTCATA
1 AATTTAATTCATA
27227681 AATTTAATTCATA
1 AATTTAATTCATA
27227694 TTAGGACACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
AATTTAATTCATA
Found at i:27228107 original size:20 final size:21
Alignment explanation
Indices: 27228082--27228120 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
27228072 TCAAACAAGC
27228082 AAATGAGCTCAA-TGAGCTGG
1 AAATGAGCTCAATTGAGCTGG
*
27228102 AAATGAGCTGAATTGAGCT
1 AAATGAGCTCAATTGAGCT
27228121 CAACGAGCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.23
Consensus pattern (21 bp):
AAATGAGCTCAATTGAGCTGG
Found at i:27229417 original size:18 final size:18
Alignment explanation
Indices: 27229396--27229447 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
27229386 CTCTCTTTCT
27229396 TTTTCAATCTCATTTTGC
1 TTTTCAATCTCATTTTGC
* *
27229414 TTTTCACTCT-ATTTTGT
1 TTTTCAATCTCATTTTGC
*
27229431 TTTTGAAATCTCATTTT
1 TTTT-CAATCTCATTTT
27229448 CATATTTTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
17 10 0.36
18 13 0.46
19 5 0.18
ACGTcount: A:0.17, C:0.17, G:0.06, T:0.60
Consensus pattern (18 bp):
TTTTCAATCTCATTTTGC
Found at i:27229461 original size:6 final size:6
Alignment explanation
Indices: 27229452--27229550 Score: 74
Period size: 6 Copynumber: 16.0 Consensus size: 6
27229442 CATTTTCATA
* * * **
27229452 TTTTTC TTTTTC AATTTTC TTTTCTTC ATTTTC TTTTTC TCTCAC TTTTTC
1 TTTTTC TTTTTC -TTTTTC -TTT-TTC TTTTTC TTTTTC TTTTTC TTTTTC
* * **
27229503 GTTTTC TTTTTC TTTTT- TGTTTTC TTTTTC TTCTTC ACTTTC TTTTTC
1 TTTTTC TTTTTC TTTTTC T-TTTTC TTTTTC TTTTTC TTTTTC TTTTTC
27229551 GAATTCATTA
Statistics
Matches: 70, Mismatches: 19, Indels: 8
0.72 0.20 0.08
Matches are distributed among these distances:
5 1 0.01
6 56 0.80
7 10 0.14
8 3 0.04
ACGTcount: A:0.05, C:0.20, G:0.02, T:0.73
Consensus pattern (6 bp):
TTTTTC
Found at i:27230517 original size:10 final size:10
Alignment explanation
Indices: 27230500--27230550 Score: 66
Period size: 10 Copynumber: 4.9 Consensus size: 10
27230490 TCAATCCACG
27230500 AATTTTTTTT
1 AATTTTTTTT
*
27230510 ACTTTTTTTTTT
1 A--ATTTTTTTT
*
27230522 AATTTTTTTC
1 AATTTTTTTT
27230532 AATTTTTTTT
1 AATTTTTTTT
27230542 AATTTTTTT
1 AATTTTTTT
27230551 AATCACTTAC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
10 26 0.74
12 9 0.26
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78
Consensus pattern (10 bp):
AATTTTTTTT
Found at i:27230527 original size:9 final size:9
Alignment explanation
Indices: 27230515--27230553 Score: 60
Period size: 9 Copynumber: 4.1 Consensus size: 9
27230505 TTTTTACTTT
27230515 TTTTTTTAA
1 TTTTTTTAA
27230524 TTTTTTTCAA
1 TTTTTTT-AA
27230534 TTTTTTTTAA
1 -TTTTTTTAA
27230544 TTTTTTTAA
1 TTTTTTTAA
27230553 T
1 T
27230554 CACTTACTCC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 17 0.61
10 4 0.14
11 7 0.25
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTTTTTAA
Found at i:27231669 original size:13 final size:13
Alignment explanation
Indices: 27231651--27231676 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
27231641 ACCTGAAAGC
27231651 AATTTAATTCATA
1 AATTTAATTCATA
27231664 AATTTAATTCATA
1 AATTTAATTCATA
27231677 TTAGGACACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
AATTTAATTCATA
Found at i:27232090 original size:20 final size:21
Alignment explanation
Indices: 27232065--27232103 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
27232055 TCAAACAAGC
27232065 AAATGAGCTCAA-TGAGCTGG
1 AAATGAGCTCAATTGAGCTGG
*
27232085 AAATGAGCTGAATTGAGCT
1 AAATGAGCTCAATTGAGCT
27232104 CAACGAGCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.23
Consensus pattern (21 bp):
AAATGAGCTCAATTGAGCTGG
Found at i:27233399 original size:18 final size:18
Alignment explanation
Indices: 27233378--27233429 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
27233368 CTCTCTTTCT
27233378 TTTTCAATCTCATTTTGC
1 TTTTCAATCTCATTTTGC
* *
27233396 TTTTCACTCT-ATTTTGT
1 TTTTCAATCTCATTTTGC
*
27233413 TTTTGAAATCTCATTTT
1 TTTT-CAATCTCATTTT
27233430 CATATTTTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
17 10 0.36
18 13 0.46
19 5 0.18
ACGTcount: A:0.17, C:0.17, G:0.06, T:0.60
Consensus pattern (18 bp):
TTTTCAATCTCATTTTGC
Found at i:27233443 original size:6 final size:6
Alignment explanation
Indices: 27233434--27233532 Score: 74
Period size: 6 Copynumber: 16.0 Consensus size: 6
27233424 CATTTTCATA
* * * **
27233434 TTTTTC TTTTTC AATTTTC TTTTCTTC ATTTTC TTTTTC TCTCAC TTTTTC
1 TTTTTC TTTTTC -TTTTTC -TTT-TTC TTTTTC TTTTTC TTTTTC TTTTTC
* * **
27233485 GTTTTC TTTTTC TTTTT- TGTTTTC TTTTTC TTCTTC ACTTTC TTTTTC
1 TTTTTC TTTTTC TTTTTC T-TTTTC TTTTTC TTTTTC TTTTTC TTTTTC
27233533 GAATTCATTA
Statistics
Matches: 70, Mismatches: 19, Indels: 8
0.72 0.20 0.08
Matches are distributed among these distances:
5 1 0.01
6 56 0.80
7 10 0.14
8 3 0.04
ACGTcount: A:0.05, C:0.20, G:0.02, T:0.73
Consensus pattern (6 bp):
TTTTTC
Found at i:27234502 original size:11 final size:11
Alignment explanation
Indices: 27234486--27234535 Score: 68
Period size: 11 Copynumber: 4.7 Consensus size: 11
27234476 ATCCACGAAT
*
27234486 TTTTTTTTTAC
1 TTTTTTTTTAA
27234497 TTTTTTTTT-A
1 TTTTTTTTTAA
*
27234507 -TTTTTTTCAA
1 TTTTTTTTTAA
27234517 TTTTTTTTTAA
1 TTTTTTTTTAA
27234528 TTTTTTTT
1 TTTTTTTT
27234536 AATCACTTAC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 7 0.21
10 1 0.03
11 26 0.76
ACGTcount: A:0.12, C:0.04, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTTTTTTAA
Found at i:27234537 original size:10 final size:10
Alignment explanation
Indices: 27234487--27234538 Score: 68
Period size: 10 Copynumber: 5.1 Consensus size: 10
27234477 TCCACGAATT
*
27234487 TTTTTTTTAC
1 TTTTTTTTAA
*
27234497 TTTTTTTTTA
1 TTTTTTTTAA
*
27234507 TTTTTTTCAA
1 TTTTTTTTAA
27234517 TTTTTTTTTAA
1 -TTTTTTTTAA
27234528 TTTTTTTTAA
1 TTTTTTTTAA
27234538 T
1 T
27234539 CACTTACTCC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
10 27 0.75
11 9 0.25
ACGTcount: A:0.15, C:0.04, G:0.00, T:0.81
Consensus pattern (10 bp):
TTTTTTTTAA
Found at i:27235666 original size:13 final size:13
Alignment explanation
Indices: 27235648--27235673 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
27235638 ACCTAAAAGC
27235648 AATTTAATTCATA
1 AATTTAATTCATA
27235661 AATTTAATTCATA
1 AATTTAATTCATA
27235674 TTAGGACACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
AATTTAATTCATA
Found at i:27236087 original size:20 final size:21
Alignment explanation
Indices: 27236062--27236100 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
27236052 TCAAACAAGC
27236062 AAATGAGCTCAA-TGAGCTGG
1 AAATGAGCTCAATTGAGCTGG
*
27236082 AAATGAGCTGAATTGAGCT
1 AAATGAGCTCAATTGAGCT
27236101 CAACGAGCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.23
Consensus pattern (21 bp):
AAATGAGCTCAATTGAGCTGG
Found at i:27238522 original size:47 final size:47
Alignment explanation
Indices: 27238453--27238544 Score: 184
Period size: 47 Copynumber: 2.0 Consensus size: 47
27238443 TGGTCACCTG
27238453 AATTTTATTTATTTATTATTCATTTATTTTAGATGATCTTTTGATTT
1 AATTTTATTTATTTATTATTCATTTATTTTAGATGATCTTTTGATTT
27238500 AATTTTATTTATTTATTATTCATTTATTTTAGATGATCTTTTGAT
1 AATTTTATTTATTTATTATTCATTTATTTTAGATGATCTTTTGAT
27238545 ATTATTAAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.26, C:0.04, G:0.07, T:0.63
Consensus pattern (47 bp):
AATTTTATTTATTTATTATTCATTTATTTTAGATGATCTTTTGATTT
Found at i:27243408 original size:22 final size:22
Alignment explanation
Indices: 27243383--27243427 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
27243373 ATTATGATGA
27243383 TTGATATGT-TGAGATTGATATT
1 TTGATATGTATGAGATT-ATATT
*
27243405 TTGATATGTATGTGATTATATT
1 TTGATATGTATGAGATTATATT
27243427 T
1 T
27243428 GTGTTGATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.27, C:0.00, G:0.20, T:0.53
Consensus pattern (22 bp):
TTGATATGTATGAGATTATATT
Found at i:27244463 original size:17 final size:16
Alignment explanation
Indices: 27244434--27244485 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
27244424 TTTAGCTTTG
*
27244434 AAACTATAGACTATGA
1 AAACTAAAGACTATGA
*
27244450 AAACCTAAAGACTAGGA
1 AAA-CTAAAGACTATGA
* * *
27244467 CAACTATAGACTGTGA
1 AAACTAAAGACTATGA
27244483 AAA
1 AAA
27244486 TGATAGGTAG
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
16 15 0.54
17 13 0.46
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.19
Consensus pattern (16 bp):
AAACTAAAGACTATGA
Found at i:27252044 original size:42 final size:42
Alignment explanation
Indices: 27251985--27252077 Score: 114
Period size: 42 Copynumber: 2.2 Consensus size: 42
27251975 CACCAACCCG
* * * * *
27251985 TGTGCTAGGTTGTGTAACACTTGAAATGGCCTTAAAATCCCA
1 TGTGCCAGGTCGTGTAACACTCGAAATGGCCTCAAAAGCCCA
* * *
27252027 TGTGCCAGGTCGTGTAACACTCGATATGGCCTCACACGCCCA
1 TGTGCCAGGTCGTGTAACACTCGAAATGGCCTCAAAAGCCCA
27252069 TGTGCCAGG
1 TGTGCCAGG
27252078 CCATGTGCTA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.26
Consensus pattern (42 bp):
TGTGCCAGGTCGTGTAACACTCGAAATGGCCTCAAAAGCCCA
Found at i:27262407 original size:24 final size:24
Alignment explanation
Indices: 27262359--27262405 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
27262349 GTTTTAGAAC
27262359 TTTTGATTATTATGATGATTGATA
1 TTTTGATTATTATGATGATTGATA
27262383 TTTTGA-TATGTATG-TGATT-ATA
1 TTTTGATTAT-TATGATGATTGATA
27262405 T
1 T
27262406 ATGTGCTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 4 0.18
23 8 0.36
24 10 0.45
ACGTcount: A:0.28, C:0.00, G:0.17, T:0.55
Consensus pattern (24 bp):
TTTTGATTATTATGATGATTGATA
Found at i:27266027 original size:19 final size:20
Alignment explanation
Indices: 27265993--27266030 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
27265983 ATTCAATTTC
27265993 ACATTTATATAAATATTCAT
1 ACATTTATATAAATATTCAT
*
27266013 ACATTT-TATACATATTCA
1 ACATTTATATAAATATTCA
27266031 ATTTAGTCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.42, C:0.13, G:0.00, T:0.45
Consensus pattern (20 bp):
ACATTTATATAAATATTCAT
Found at i:27271797 original size:32 final size:32
Alignment explanation
Indices: 27271753--27271820 Score: 127
Period size: 32 Copynumber: 2.1 Consensus size: 32
27271743 TTATTTTAAA
27271753 ATTCGTCATCTCCTAATCTAGCAGTTTAAAAT
1 ATTCGTCATCTCCTAATCTAGCAGTTTAAAAT
*
27271785 ATTCTTCATCTCCTAATCTAGCAGTTTAAAAT
1 ATTCGTCATCTCCTAATCTAGCAGTTTAAAAT
27271817 ATTC
1 ATTC
27271821 AAGGAAAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (32 bp):
ATTCGTCATCTCCTAATCTAGCAGTTTAAAAT
Found at i:27272139 original size:30 final size:30
Alignment explanation
Indices: 27272103--27272160 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
27272093 TAGCAGTACG
* *
27272103 GTGTGGGCCTTATCCCATTACAGTAACAAT
1 GTGTGGGCCTTAACCCAATACAGTAACAAT
27272133 GTGTGGGCCTTAACCCAATACAGTAACA
1 GTGTGGGCCTTAACCCAATACAGTAACA
27272161 GTACAATGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (30 bp):
GTGTGGGCCTTAACCCAATACAGTAACAAT
Found at i:27272297 original size:26 final size:26
Alignment explanation
Indices: 27272268--27272344 Score: 118
Period size: 26 Copynumber: 3.0 Consensus size: 26
27272258 AAACCAATAT
*
27272268 CGCAGCAAAGCTGCCAATAATAGTAA
1 CGCAGCAAAGCTGCCAGTAATAGTAA
* *
27272294 CGCAGCAACGCTACCAGTAATAGTAA
1 CGCAGCAAAGCTGCCAGTAATAGTAA
*
27272320 CGCAGCAAAGCTGCCAGTAACAGTA
1 CGCAGCAAAGCTGCCAGTAATAGTA
27272345 TATGTGGCAA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.39, C:0.26, G:0.21, T:0.14
Consensus pattern (26 bp):
CGCAGCAAAGCTGCCAGTAATAGTAA
Found at i:27272539 original size:27 final size:27
Alignment explanation
Indices: 27272520--27272635 Score: 171
Period size: 27 Copynumber: 4.3 Consensus size: 27
27272510 GGTATAACAA
*
27272520 TCATTTTACCCTTTGGGGGTATTTCAG
1 TCATTTTACCCTTTGAGGGTATTTCAG
*
27272547 TCATTTTACCCTTCGAGGGTATTTC-G
1 TCATTTTACCCTTTGAGGGTATTTCAG
27272573 TTCATTTTACCCTTTGAGGGTATTTCAG
1 -TCATTTTACCCTTTGAGGGTATTTCAG
* * *
27272601 TCATTTTACCCTTCGAGGTTATTTCGG
1 TCATTTTACCCTTTGAGGGTATTTCAG
27272628 TCATTTTA
1 TCATTTTA
27272636 GGCCCATTAC
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
26 1 0.01
27 79 0.98
28 1 0.01
ACGTcount: A:0.16, C:0.20, G:0.18, T:0.46
Consensus pattern (27 bp):
TCATTTTACCCTTTGAGGGTATTTCAG
Found at i:27272594 original size:54 final size:54
Alignment explanation
Indices: 27272520--27272635 Score: 205
Period size: 54 Copynumber: 2.1 Consensus size: 54
27272510 GGTATAACAA
* *
27272520 TCATTTTACCCTTTGGGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCGT
1 TCATTTTACCCTTTGAGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCGG
*
27272574 TCATTTTACCCTTTGAGGGTATTTCAGTCATTTTACCCTTCGAGGTTATTTCGG
1 TCATTTTACCCTTTGAGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCGG
27272628 TCATTTTA
1 TCATTTTA
27272636 GGCCCATTAC
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 59 1.00
ACGTcount: A:0.16, C:0.20, G:0.18, T:0.46
Consensus pattern (54 bp):
TCATTTTACCCTTTGAGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCGG
Found at i:27278755 original size:26 final size:26
Alignment explanation
Indices: 27278726--27278787 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 26
27278716 TACCTCTTAC
27278726 AAAATTTTGACGAATTTACCCCTAGT
1 AAAATTTTGACGAATTTACCCCTAGT
* *
27278752 AAAATTTTGATGATTTTACCCCTAGT
1 AAAATTTTGACGAATTTACCCCTAGT
*
27278778 CAAATTTTGA
1 AAAATTTTGA
27278788 AAAAATATGT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (26 bp):
AAAATTTTGACGAATTTACCCCTAGT
Found at i:27287452 original size:31 final size:31
Alignment explanation
Indices: 27287414--27287473 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
27287404 ATTATGTATG
27287414 TATGTATCCCTAATCCTAAAAATAGATTTGT
1 TATGTATCCCTAATCCTAAAAATAGATTTGT
27287445 TATGTATCCCTAATCCTAAAAATAGATTT
1 TATGTATCCCTAATCCTAAAAATAGATTT
27287474 ACATCACCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.37, C:0.17, G:0.08, T:0.38
Consensus pattern (31 bp):
TATGTATCCCTAATCCTAAAAATAGATTTGT
Found at i:27296823 original size:22 final size:22
Alignment explanation
Indices: 27296795--27296838 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
27296785 AAGTTGGACC
27296795 CAAGGGGCGATGGGCCTTTCCA
1 CAAGGGGCGATGGGCCTTTCCA
27296817 CAAGGGGCGATGGGCCTTTCCA
1 CAAGGGGCGATGGGCCTTTCCA
27296839 AGTACTCGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.27, G:0.36, T:0.18
Consensus pattern (22 bp):
CAAGGGGCGATGGGCCTTTCCA
Found at i:27311693 original size:27 final size:27
Alignment explanation
Indices: 27311662--27311838 Score: 189
Period size: 27 Copynumber: 6.6 Consensus size: 27
27311652 TAAATTGTAC
27311662 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* **
27311689 TGCACTAAGTGTGCGAAATGA--ATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
27311714 GATGCACTAAGTGTGCGAATTGACCATG-
1 -A-GCACTAAGTGTGCGATTTGACTATGT
* *
27311742 CGGACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
27311770 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
27311797 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
27311824 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
27311839 GACTCAATAT
Statistics
Matches: 127, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
25 4 0.03
26 14 0.11
27 92 0.72
28 14 0.11
29 3 0.02
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:27311802 original size:81 final size:80
Alignment explanation
Indices: 27311665--27311817 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 80
27311655 ATTGTACAGC
* *
27311665 ACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATGTGATGCACTAAGTGTGC
1 ACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAACGTGATGCACTAAGTGTGC
27311730 GAATTGACCATGCGG
66 GAATTGACCATGCGG
**
27311745 ACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGT-A-GCACTAAGTG
1 ACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGA--ACGTGATGCACTAAGTG
*
27311808 TGCGAGTTGA
63 TGCGAATTGA
27311818 TTATATAGCA
Statistics
Matches: 65, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
80 13 0.20
81 48 0.74
82 1 0.02
83 3 0.05
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (80 bp):
ACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAACGTGATGCACTAAGTGTGC
GAATTGACCATGCGG
Found at i:27319541 original size:27 final size:27
Alignment explanation
Indices: 27319507--27319684 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
27319497 TAAATTGTAC
27319507 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
27319534 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
27319560 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
27319588 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
27319616 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
27319643 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
27319670 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
27319685 GACTTAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:27319621 original size:82 final size:81
Alignment explanation
Indices: 27319508--27319663 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
27319498 AAATTGTACA
* *
27319508 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
27319572 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
27319589 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
27319654 TGCGAGTTGA
65 TGCGAATTGA
27319664 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:27319675 original size:82 final size:81
Alignment explanation
Indices: 27319504--27319684 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
27319494 GGTTAAATTG
* *
27319504 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
27319569 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
27319585 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
27319649 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
27319667 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
27319685 GACTTAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:27322218 original size:20 final size:20
Alignment explanation
Indices: 27322178--27322218 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
27322168 GTCTTAGCCG
*
27322178 AATTAAATGTGTCCTAGTTT
1 AATTAAATGTGTCCTAATTT
* *
27322198 AATTAAATTTGTCTTAATTT
1 AATTAAATGTGTCCTAATTT
27322218 A
1 A
27322219 TTACATGTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.34, C:0.07, G:0.10, T:0.49
Consensus pattern (20 bp):
AATTAAATGTGTCCTAATTT
Found at i:27337451 original size:39 final size:39
Alignment explanation
Indices: 27337395--27337472 Score: 104
Period size: 39 Copynumber: 2.0 Consensus size: 39
27337385 AAGGTTTGCA
* *
27337395 AAGTGTTTTGAGAATAGGATAGGTGATGGTTCGGCTAAG
1 AAGTGTTTTGAGAATAGGATAGGTGATGGCTCAGCTAAG
* *
27337434 AAGTGTTTT-AGGGATAGGATTGGTGATGGCTCAGCTAAG
1 AAGTGTTTTGA-GAATAGGATAGGTGATGGCTCAGCTAAG
27337473 GATAGAAACA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.03
39 33 0.97
ACGTcount: A:0.27, C:0.06, G:0.36, T:0.31
Consensus pattern (39 bp):
AAGTGTTTTGAGAATAGGATAGGTGATGGCTCAGCTAAG
Found at i:27339243 original size:14 final size:14
Alignment explanation
Indices: 27339215--27339243 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
27339205 GCTTAGTGGC
27339215 TTTTGACTTGATTT
1 TTTTGACTTGATTT
27339229 TTTTG-CTTGATTT
1 TTTTGACTTGATTT
27339242 TT
1 TT
27339244 AAGCAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.10, C:0.07, G:0.14, T:0.69
Consensus pattern (14 bp):
TTTTGACTTGATTT
Found at i:27341978 original size:18 final size:18
Alignment explanation
Indices: 27341957--27341991 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
27341947 TAAAAAATTA
27341957 TAAAAAACATAAAAAACG
1 TAAAAAACATAAAAAACG
* *
27341975 TAAAAAAGATGAAAAAC
1 TAAAAAACATAAAAAAC
27341992 AAAAAGAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.71, C:0.09, G:0.09, T:0.11
Consensus pattern (18 bp):
TAAAAAACATAAAAAACG
Found at i:27342226 original size:20 final size:20
Alignment explanation
Indices: 27342180--27342226 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
27342170 AGCTCGTTTC
*
27342180 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
27342200 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
27342220 CAGCTCA
1 CAGCTCA
27342227 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:27344875 original size:48 final size:47
Alignment explanation
Indices: 27344796--27344901 Score: 135
Period size: 48 Copynumber: 2.2 Consensus size: 47
27344786 GAGTGTCATG
*
27344796 GAAAAAGAAATTGAGATTGAAAAAGGATGTGA-AAAAGAGAAAGAAATC
1 GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAA-AGAAA-AAATC
* *
27344844 GAAAAAGAAATTGAGATTGAACAAAAG-TGTGAGGAAAAAGAGAAAATT
1 GAAAAAGAAATTGAGATTGAA-AAAAGATGTGA-GAAAAAGAAAAAATC
27344892 GAAAAAGAAA
1 GAAAAAGAAA
27344902 GAAAAGACAA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.59, C:0.02, G:0.25, T:0.14
Consensus pattern (47 bp):
GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAAAGAAAAAATC
Found at i:27346074 original size:20 final size:20
Alignment explanation
Indices: 27346028--27346074 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
27346018 AGCTCGTTTC
*
27346028 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
27346048 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
27346068 CAGCTCA
1 CAGCTCA
27346075 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:27360712 original size:18 final size:18
Alignment explanation
Indices: 27360691--27360725 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
27360681 TATTCTTTTT
27360691 GTTTTTCATCTTTTTTAC
1 GTTTTTCATCTTTTTTAC
* *
27360709 GTTTTTTATGTTTTTTA
1 GTTTTTCATCTTTTTTA
27360726 TAATTTTTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.11, C:0.09, G:0.09, T:0.71
Consensus pattern (18 bp):
GTTTTTCATCTTTTTTAC
Found at i:27369860 original size:19 final size:20
Alignment explanation
Indices: 27369836--27369875 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
27369826 AAGCTTAATC
*
27369836 TCAGCTCGTTT-AGCTCAAT
1 TCAGCTCATTTCAGCTCAAT
27369855 TCAGCTCATTTCCAGCTCAAT
1 TCAGCTCATTT-CAGCTCAAT
27369876 AAGCTTGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
21 8 0.44
ACGTcount: A:0.23, C:0.30, G:0.12, T:0.35
Consensus pattern (20 bp):
TCAGCTCATTTCAGCTCAAT
Found at i:27391216 original size:23 final size:23
Alignment explanation
Indices: 27391189--27391242 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
27391179 AAATTTGAAT
*
27391189 TTCGAGTTAA-TCGAATTAAGTTA
1 TTCGAGTTAACTCGAA-TAAGTAA
* *
27391212 TTCGAGTCAACTTGAATAAGTAA
1 TTCGAGTTAACTCGAATAAGTAA
27391235 TTCGAGTT
1 TTCGAGTT
27391243 TCGAGTTGAG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
23 22 0.85
24 4 0.15
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (23 bp):
TTCGAGTTAACTCGAATAAGTAA
Found at i:27391707 original size:14 final size:14
Alignment explanation
Indices: 27391688--27391714 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
27391678 TTTAATTTTT
27391688 TAATTTAACTCGAA
1 TAATTTAACTCGAA
27391702 TAATTTAACTCGA
1 TAATTTAACTCGA
27391715 TTCAACTCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (14 bp):
TAATTTAACTCGAA
Found at i:27405048 original size:130 final size:130
Alignment explanation
Indices: 27404815--27405206 Score: 698
Period size: 130 Copynumber: 3.0 Consensus size: 130
27404805 CCTATATATT
* * *
27404815 CCTAAGGTTCAAATGGGGCTCGATAGTAGTTGTAACATCATTGGATTTTTCTGTTGAAGCATCAT
1 CCTAAGGTTCAAATGGGGCTCGATAGTAGTCGTAACGTCATTGGATTTTTCTGTCGAAGCATCAT
27404880 ATGATAATTAACGTAATAACATTTAGCTCAAATACATTAAAACACTATTTAAACATACAAACTTA
66 ATGATAATTAACGTAATAACATTTAGCTCAAATACATTAAAACACTATTTAAACATACAAACTTA
* *
27404945 CCTAAGGTTCAAATGGGGCTCGATAGTTGTCGTAACGTCATTGGATTTTTCTGTCGAATCATCAT
1 CCTAAGGTTCAAATGGGGCTCGATAGTAGTCGTAACGTCATTGGATTTTTCTGTCGAAGCATCAT
* *
27405010 ATGATAATTAACGTAATAACATTTAGCTCAAACACATTAAAACACTA-TTAAACATACAATCTTA
66 ATGATAATTAACGTAATAACATTTAGCTCAAATACATTAAAACACTATTTAAACATACAAACTTA
27405074 CCTAAGGTTCAAATGGGGCTCGATAGTCA-TCGTAACGTCATTGGATTTTTCTGTCGAAGCATCA
1 CCTAAGGTTCAAATGGGGCTCGATAGT-AGTCGTAACGTCATTGGATTTTTCTGTCGAAGCATCA
27405138 TATGATAATTAACGTAATAACATTTAGCTCAAATACATTAAAACACTATTTAAACATACAAACTT
65 TATGATAATTAACGTAATAACATTTAGCTCAAATACATTAAAACACTATTTAAACATACAAACTT
27405203 A
130 A
27405204 CCT
1 CCT
27405207 CGATCACAAA
Statistics
Matches: 249, Mismatches: 11, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
129 124 0.50
130 125 0.50
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.32
Consensus pattern (130 bp):
CCTAAGGTTCAAATGGGGCTCGATAGTAGTCGTAACGTCATTGGATTTTTCTGTCGAAGCATCAT
ATGATAATTAACGTAATAACATTTAGCTCAAATACATTAAAACACTATTTAAACATACAAACTTA
Found at i:27405128 original size:129 final size:129
Alignment explanation
Indices: 27404815--27405206 Score: 687
Period size: 129 Copynumber: 3.0 Consensus size: 129
27404805 CCTATATATT
* * *
27404815 CCTAAGGTTCAAATGGGGCTCGATAGTAGTTGTAACATCATTGGATTTTTCTGTTGAAGCATCAT
1 CCTAAGGTTCAAATGGGGCTCGATAGTA-TCGTAACGTCATTGGATTTTTCTGTCGAAGCATCAT
27404880 ATGATAATTAACGTAATAACATTTAGCTCAAATACATTAAAACACTATTTAAACATACAAACTTA
65 ATGATAATTAACGTAATAACATTTAGCTCAAATACATTAAAACACTATTTAAACATACAAACTTA
* *
27404945 CCTAAGGTTCAAATGGGGCTCGATAGTTGTCGTAACGTCATTGGATTTTTCTGTCGAATCATCAT
1 CCTAAGGTTCAAATGGGGCTCGATAG-TATCGTAACGTCATTGGATTTTTCTGTCGAAGCATCAT
* *
27405010 ATGATAATTAACGTAATAACATTTAGCTCAAACACATTAAAACACTA-TTAAACATACAATCTTA
65 ATGATAATTAACGTAATAACATTTAGCTCAAATACATTAAAACACTATTTAAACATACAAACTTA
27405074 CCTAAGGTTCAAATGGGGCTCGATAGTCATCGTAACGTCATTGGATTTTTCTGTCGAAGCATCAT
1 CCTAAGGTTCAAATGGGGCTCGATAGT-ATCGTAACGTCATTGGATTTTTCTGTCGAAGCATCAT
27405139 ATGATAATTAACGTAATAACATTTAGCTCAAATACATTAAAACACTATTTAAACATACAAACTTA
65 ATGATAATTAACGTAATAACATTTAGCTCAAATACATTAAAACACTATTTAAACATACAAACTTA
27405204 CCT
1 CCT
27405207 CGATCACAAA
Statistics
Matches: 248, Mismatches: 11, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
128 1 0.00
129 123 0.50
130 123 0.50
131 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.32
Consensus pattern (129 bp):
CCTAAGGTTCAAATGGGGCTCGATAGTATCGTAACGTCATTGGATTTTTCTGTCGAAGCATCATA
TGATAATTAACGTAATAACATTTAGCTCAAATACATTAAAACACTATTTAAACATACAAACTTA
Found at i:27410519 original size:23 final size:23
Alignment explanation
Indices: 27410484--27410537 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 23
27410474 TTATTATTTG
27410484 TTTTGAATATGTC-TAGCTACAACA
1 TTTT-AATATGTCTTAGCT-CAACA
* *
27410508 TTTTAATGTGTCTTTAGCTTAACA
1 TTTTAATATGTC-TTAGCTCAACA
27410532 TTTTAA
1 TTTTAA
27410538 ATACAGGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
23 7 0.27
24 14 0.54
25 5 0.19
ACGTcount: A:0.30, C:0.13, G:0.11, T:0.46
Consensus pattern (23 bp):
TTTTAATATGTCTTAGCTCAACA
Found at i:27413695 original size:30 final size:30
Alignment explanation
Indices: 27413645--27413703 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
27413635 TTTGAGATTT
27413645 GGGGAAAAAGTGTAAATATGCAAAAGTTTA
1 GGGGAAAAAGTGTAAATATGCAAAAGTTTA
* * * *
27413675 GGGGCAAAATTGTAATTATGCCAAAGTTT
1 GGGGAAAAAGTGTAAATATGCAAAAGTTT
27413704 GAGTCAAGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.07, G:0.25, T:0.27
Consensus pattern (30 bp):
GGGGAAAAAGTGTAAATATGCAAAAGTTTA
Found at i:27414187 original size:49 final size:50
Alignment explanation
Indices: 27414093--27414215 Score: 131
Period size: 49 Copynumber: 2.5 Consensus size: 50
27414083 TATTGAGGTT
* * ** *
27414093 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCAAG
1 ATGAGAGGTCCCACGTAAGACCATGTCTAGGACATGGCATGGGCACCAAG
* * * *
27414143 ATGAGAGTTCCC-CGTAAGATCATGTCTAGGACATGGCATGGGCACCGAT
1 ATGAGAGGTCCCACGTAAGACCATGTCTAGGACATGGCATGGGCACCAAG
** *
27414192 ATGAGAACTCCCATGTAAGACCAT
1 ATGAGAGGTCCCACGTAAGACCAT
27414216 ATCTGGGATA
Statistics
Matches: 59, Mismatches: 13, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
49 39 0.66
50 20 0.34
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (50 bp):
ATGAGAGGTCCCACGTAAGACCATGTCTAGGACATGGCATGGGCACCAAG
Found at i:27414534 original size:20 final size:20
Alignment explanation
Indices: 27414496--27414534 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
27414486 TAAGTAAGCA
*
27414496 AGTAAGCAAACAAGTAAGAG
1 AGTAAGCAAACAAGAAAGAG
* *
27414516 AGTAAGTAAAGAAGAAAGA
1 AGTAAGCAAACAAGAAAGA
27414535 AAGATCATGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.59, C:0.05, G:0.26, T:0.10
Consensus pattern (20 bp):
AGTAAGCAAACAAGAAAGAG
Found at i:27416381 original size:87 final size:87
Alignment explanation
Indices: 27416278--27416541 Score: 332
Period size: 87 Copynumber: 3.0 Consensus size: 87
27416268 TAGTGCATTT
* ** * * *
27416278 ATATTTGATGGTCGTCACCATCCCTTTTCATAACCAATAGTCAAAACTATCCCTTTTCATAATTG
1 ATATTTGATGATCGTCACCATCCCTTTTCATAGTCGATAGTCGAAACTATCCCTTTTCATATTTG
* ** *
27416343 ATAGTCAAAACTATCCCTTTTC
66 ATGGTCATCACCATCCCTTTTC
* * * ** *
27416365 ATATTT-ATTGATCGTCACCATCCCTTTTCATAGTTGCTGGTCGTCACCATCCCTTTTCATATTT
1 ATATTTGA-TGATCGTCACCATCCCTTTTCATAGTCGATAGTCGAAACTATCCCTTTTCATATTT
*
27416429 GATGGTCATCACCATCCCTATTC
65 GATGGTCATCACCATCCCTTTTC
* *
27416452 ATATTTGATGGTCGTTACCATCCCTTTTCATAGTCGATAGTCGAAACTATCCCTTTTCATATTTG
1 ATATTTGATGATCGTCACCATCCCTTTTCATAGTCGATAGTCGAAACTATCCCTTTTCATATTTG
*
27416517 ATGGTCGTCACCATCCCTTTTC
66 ATGGTCATCACCATCCCTTTTC
27416539 ATA
1 ATA
27416542 GTCGATAGTC
Statistics
Matches: 148, Mismatches: 27, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
86 1 0.01
87 146 0.99
88 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.11, T:0.39
Consensus pattern (87 bp):
ATATTTGATGATCGTCACCATCCCTTTTCATAGTCGATAGTCGAAACTATCCCTTTTCATATTTG
ATGGTCATCACCATCCCTTTTC
Found at i:27416387 original size:29 final size:29
Alignment explanation
Indices: 27416326--27416541 Score: 254
Period size: 29 Copynumber: 7.4 Consensus size: 29
27416316 AGTCAAAACT
* * *** *
27416326 ATCCCTTTTCATAATTGATAGTCAAAACT
1 ATCCCTTTTCATATTTGATGGTCGTCACC
*
27416355 ATCCCTTTTCATATTT-ATTGATCGTCACC
1 ATCCCTTTTCATATTTGA-TGGTCGTCACC
* *
27416384 ATCCCTTTTCATAGTTGCTGGTCGTCACC
1 ATCCCTTTTCATATTTGATGGTCGTCACC
*
27416413 ATCCCTTTTCATATTTGATGGTCATCACC
1 ATCCCTTTTCATATTTGATGGTCGTCACC
* *
27416442 ATCCCTATTCATATTTGATGGTCGTTACC
1 ATCCCTTTTCATATTTGATGGTCGTCACC
* * * ** *
27416471 ATCCCTTTTCATAGTCGATAGTCGAAACT
1 ATCCCTTTTCATATTTGATGGTCGTCACC
27416500 ATCCCTTTTCATATTTGATGGTCGTCACC
1 ATCCCTTTTCATATTTGATGGTCGTCACC
27416529 ATCCCTTTTCATA
1 ATCCCTTTTCATA
27416542 GTCGATAGTC
Statistics
Matches: 156, Mismatches: 29, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
28 1 0.01
29 155 0.99
ACGTcount: A:0.22, C:0.26, G:0.11, T:0.40
Consensus pattern (29 bp):
ATCCCTTTTCATATTTGATGGTCGTCACC
Found at i:27416542 original size:58 final size:58
Alignment explanation
Indices: 27416278--27416553 Score: 295
Period size: 58 Copynumber: 4.8 Consensus size: 58
27416268 TAGTGCATTT
** * * *
27416278 ATATTTGATGGTCGTCACCATCCCTTTTCATAACCAATAGTCAAAACTATCCCTTTTC
1 ATATTTGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCGAAACCATCCCTTTTC
* * *** * ** * **
27416336 ATAATTGATAGTCAAAACTATCCCTTTTCATA-TTTATTGATCGTCACCATCCCTTTTC
1 ATATTTGATGGTCGTCACCATCCCTTTTCATAGTCGATAG-TCGAAACCATCCCTTTTC
* * * * * * *
27416394 ATAGTTGCTGGTCGTCACCATCCCTTTTCATATTTGATGGTC-ATCACCATCCCTATTC
1 ATATTTGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCGA-AACCATCCCTTTTC
* *
27416452 ATATTTGATGGTCGTTACCATCCCTTTTCATAGTCGATAGTCGAAACTATCCCTTTTC
1 ATATTTGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCGAAACCATCCCTTTTC
27416510 ATATTTGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCGA
1 ATATTTGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCGA
27416554 TAGTCGAAAC
Statistics
Matches: 179, Mismatches: 35, Indels: 8
0.81 0.16 0.04
Matches are distributed among these distances:
57 3 0.02
58 170 0.95
59 6 0.03
ACGTcount: A:0.24, C:0.26, G:0.12, T:0.38
Consensus pattern (58 bp):
ATATTTGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCGAAACCATCCCTTTTC
Found at i:27416552 original size:29 final size:29
Alignment explanation
Indices: 27416282--27416552 Score: 238
Period size: 29 Copynumber: 9.3 Consensus size: 29
27416272 GCATTTATAT
* *
27416282 TTGATGGTCGTCACCATCCCTTTTCATAA
1 TTGATAGTCGTCACCATCCCTTTTCATAG
*** *** * *
27416311 CCAATAGTCAAAACTATCCCTTTTCATAA
1 TTGATAGTCGTCACCATCCCTTTTCATAG
*** *
27416340 TTGATAGTCAAAACTATCCCTTTTCATA-
1 TTGATAGTCGTCACCATCCCTTTTCATAG
* *
27416368 TTTATTGATCGTCACCATCCCTTTTCATAG
1 TTGATAG-TCGTCACCATCCCTTTTCATAG
* * *
27416398 TTGCTGGTCGTCACCATCCCTTTTCATAT
1 TTGATAGTCGTCACCATCCCTTTTCATAG
* * * *
27416427 TTGATGGTCATCACCATCCCTATTCATAT
1 TTGATAGTCGTCACCATCCCTTTTCATAG
* *
27416456 TTGATGGTCGTTACCATCCCTTTTCATAG
1 TTGATAGTCGTCACCATCCCTTTTCATAG
* ** * *
27416485 TCGATAGTCGAAACTATCCCTTTTCATAT
1 TTGATAGTCGTCACCATCCCTTTTCATAG
*
27416514 TTGATGGTCGTCACCATCCCTTTTCATAG
1 TTGATAGTCGTCACCATCCCTTTTCATAG
*
27416543 TCGATAGTCG
1 TTGATAGTCG
27416553 ATAGTCGAAA
Statistics
Matches: 198, Mismatches: 42, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
28 5 0.03
29 189 0.95
30 4 0.02
ACGTcount: A:0.23, C:0.26, G:0.12, T:0.38
Consensus pattern (29 bp):
TTGATAGTCGTCACCATCCCTTTTCATAG
Done.