Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1342
Parameters: 2 7 7 80 10 50 1000
Length:  61245

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11079--11126
20
2.4
21
72
10
55
20
27
18
33
1.96
11105--11179
31
2.4
31
93
0
123
18
33
14
33
1.91
14844--14891
15
3.3
15
73
5
53
31
0
25
43
1.55
14838--14897
29
2.1
29
90
0
93
30
0
28
41
1.56
16739--16781
11
4.0
11
84
6
61
20
4
6
67
1.33
16748--16788
21
2.0
21
85
0
55
26
2
4
65
1.25
19042--19089
20
2.4
20
89
0
69
25
20
16
37
1.93
19042--19100
10
5.9
10
73
13
50
23
22
15
38
1.92
19038--19109
30
2.4
30
84
9
85
20
22
18
38
1.93
19042--19100
20
3.0
20
74
18
59
23
22
15
38
1.92
20696--20736
16
2.6
16
96
3
75
63
0
9
26
1.25
21835--21920
18
4.6
18
71
7
64
73
3
17
5
1.18
21831--21920
6
14.7
6
70
12
58
73
3
17
5
1.17
21881--21918
13
2.8
13
82
17
51
73
0
18
7
1.06
21817--21918
12
8.0
12
68
26
50
71
2
17
7
1.22
21882--21932
21
2.4
21
74
6
50
74
1
17
5
1.11
23773--23826
20
2.7
20
82
0
63
24
20
18
37
1.94
23773--23846
30
2.5
30
86
8
98
21
20
18
39
1.93
23773--23837
20
3.2
20
71
16
53
23
21
16
38
1.93
28515--28561
20
2.3
20
85
0
67
29
36
12
21
1.91
30043--30072
10
2.8
11
95
5
53
80
6
3
10
1.01
30090--30152
11
5.4
11
75
14
63
74
3
15
6
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30041--30152
48
2.4
47
85
10
140
75
3
11
8
1.15
30090--30149
10
4.9
13
74
25
60
73
3
16
6
1.18
30041--30122
38
2.2
37
82
8
96
76
4
8
9
1.14
31172--31277
48
2.2
47
85
9
135
59
1
24
14
1.45
32947--32984
20
1.9
20
88
0
58
31
36
13
18
1.89
33862--33887
6
4.3
6
100
0
52
84
0
0
15
0.62
35233--35285
23
2.4
22
76
20
56
9
18
1
69
1.25
35243--35292
24
2.1
23
82
10
57
12
24
0
64
1.27
37915--37970
28
2.0
28
86
6
78
30
0
28
41
1.57
39839--39890
10
4.7
10
81
13
50
23
3
3
69
1.22
39823--39855
13
2.5
13
95
0
57
12
3
6
78
1.04
39825--39878
13
4.6
12
77
17
51
20
3
5
70
1.23
43862--43906
17
2.6
17
92
0
81
62
0
11
26
1.29
45072--45110
14
2.9
14
85
14
55
69
2
20
7
1.26
45047--45104
19
2.9
21
73
19
52
65
3
20
10
1.38
45075--45131
28
2.1
28
87
9
82
68
5
17
8
1.35
45075--45131
14
4.2
13
78
13
53
68
5
17
8
1.35
51709--51755
20
2.3
20
85
0
67
29
36
12
21
1.91
53238--53268
10
3.0
10
95
4
53
77
9
3
9
1.10
53249--53324
15
5.6
13
72
20
59
73
5
9
11
1.23
53249--53341
15
6.7
14
70
23
56
70
5
11
11
1.31
53287--53361
30
2.6
28
82
10
89
70
5
14
9
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57123--57148
6
4.3
6
100
0
52
84
0
0
15
0.62
58534--58576
21
2.2
20
83
8
52
9
23
0
67
1.19
58541--58582
21
2.1
20
86
8
59
7
21
0
71
1.09
60893--60924
14
2.3
14
94
0
55
75
0
0
25
0.81
60879--60924
18
2.5
19
85
3
58
69
2
2
26
1.11

Tables:   1

The End!