Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1347

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15947
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28


Found at i:2016 original size:19 final size:19

Alignment explanation


    Indices: 1992--2035  Score: 88
    Period size: 19  Copynumber: 2.3  Consensus size: 19

       1982 TACGACATAC

                               
       1992 AAGAAACCAACAAATGAGA
          1 AAGAAACCAACAAATGAGA

                               
       2011 AAGAAACCAACAAATGAGA
          1 AAGAAACCAACAAATGAGA

                  
       2030 AAGAAA
          1 AAGAAA

       2036 AAAAAATATC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   25  1.00

ACGTcount: A:0.66, C:0.14, G:0.16, T:0.05


Consensus pattern (19 bp):   
AAGAAACCAACAAATGAGA

Found at i:4321 original size:15 final size:15

Alignment explanation


    Indices: 4301--4333  Score: 66
    Period size: 15  Copynumber: 2.2  Consensus size: 15

       4291 TGAAACTGAG

                           
       4301 AGATATTTATTCATT
          1 AGATATTTATTCATT

                           
       4316 AGATATTTATTCATT
          1 AGATATTTATTCATT

               
       4331 AGA
          1 AGA

       4334 GTTTCTATAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   18  1.00

ACGTcount: A:0.36, C:0.06, G:0.09, T:0.48


Consensus pattern (15 bp):   
AGATATTTATTCATT
Done.